Pregenerated sensors for MISP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074217Ensembl transcript IDs: ENSMUST00000056686.12, ENSMUST00000185457.2, ENSMUST00000188195.2, ENSMUST00000190457.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGAAAGCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTGGAGAGTAACCCTAGGCCTTCTGCTGATCTaGAGAGTAACCCTACCCTGG | + |
|
Preference number: 2 (lower is better) Translates to: RKLALPSLGLLLIWRVTLGLLLI*RVTLPW Trigger: CCAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCC...TAGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGCTTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| 3UTR-3UTR CCA 90 bp | AATTCCATAGTCAGTATCAAAGATGGGCTGGATTTCAAGTTGCCATTAAAGAAAGGCCTTCTGCTGATCTaGAGAGTAACCCTACCCTGG | + |
|
Preference number: 2 (lower is better) Translates to: NSIVSIKDGLDFKLPLKKGLLLI*RVTLPW Trigger: CCAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCC...TTTCTTTAATGGCAACTTGAAATCCAGCCCATCTTTGATACTGACTATGGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| 3UTR-3UTR CCA 90 bp | AGAAAGGTGGTTAATTCCATAGTCAGTATCAAAGATGGGCTGGATTTCAAGTTGAGAGTAACCCTACCCTaGTTCTCCAAAGGGTATGTT | + |
|
Preference number: 2 (lower is better) Translates to: RKVVNSIVSIKDGLDFKLRVTLP*FSKGYV Trigger: AACATACCCTTTGGAGAACCAGGGTAGGGTTACTCT...CAACTTGAAATCCAGCCCATCTTTGATACTGACTATGGAATTAACCACCTTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| 3UTR CCA 72 bp | AAGCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTaGAGAGTAACCCTACCCTGGTTCTCCAAAGGGTAT | + |
|
Preference number: 3 (lower is better) Translates to: KLALPSLGLLLI*RVTLPWFSKGY Trigger: ATACCCTTTGGAGAACCAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| 3UTR CCA 72 bp | CTAGGCCTTCTGCTGATCTGGAGAGTAACCCTACCCTaGTTCTCCAAAGGGTATGTTACTTCTGTCCGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LGLLLIWRVTLP*FSKGYVTSVRR Trigger: CCTGCGGACAGAAGTAACATACCCTTTGGAGAACCAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS-3UTR CCA 90 bp | GCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTGGAGAGTAACCCTACCCTGGGTGAGGCTCGGCGCTaGCTCCTGGACCTCGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: ASPSLSRPSADLESNPTLGEARR*LLDLGV Trigger: GACGCCGAGGTCCAGGAGCCAGCGCCGAGCCTCACC...CAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| CDS-3UTR GCA 90 bp | GCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTGGAGAGTAACCCTACCCTGCCTCCCGCTCGCAGCTaGGGCGGATTTCGCGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: ASPSLSRPSADLESNPTLPPARS*GGFRAG Trigger: TCCAGCGCGAAATCCGCCGCAGCTGCGAGCGGGAGG...CAGGGTAGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS-3UTR TCA 90 bp | AAGAAAGCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTGGAGAGTAACCCTCTCCCCTGCTCGGGGTaGGGCTCGGCGCTGGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KKASPSLSRPSADLESNPLPCSG*GSALAP Trigger: AGGAGCCAGCGCCGAGCCTCACCCCGAGCAGGGGAG...AGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGCTTTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS-3UTR TCA 90 bp | AAAGCTAGCCCTTCCCTCTCTAGGCCTTCTGCTGATCTGGAGAGTAACCCTACCCTCCTGCTCCAGCAGTaGCGGGGCAACGAGCGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: KASPSLSRPSADLESNPTLLLQQ*RGNERW Trigger: CCACCGCTCGTTGCCCCGTCACTGCTGGAGCAGGAG...GGTAGGGTTACTCTCCAGATCAGCAGAAGGCCTAGAGAGGGAAGGGCTAGCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| CDS-3UTR CCA 90 bp | ATCTGGAGAGTAACCCTACCCTGGTTCTCCAAAGGGTATGTTACTTCTGTCCGCGGTGAGGCTCGGCGCTaGCTCCTGGACCTCGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: IWRVTLPWFSKGYVTSVRGEARR*LLDLGV Trigger: GACGCCGAGGTCCAGGAGCCAGCGCCGAGCCTCACC...GCGGACAGAAGTAACATACCCTTTGGAGAACCAGGGTAGGGTTACTCTCCAGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS-3UTR TCA 90 bp | AAAGATGGGCTGGATTTCAAGTTGCCATTAAAGAAAGCTAGCCCTTCCCTCTCTCTCCTGCTCCAGCAGTaGCGGGGCAACGAGCGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: KDGLDFKLPLKKASPSLSLLLQQ*RGNERW Trigger: CCACCGCTCGTTGCCCCGTCACTGCTGGAGCAGGAG...AGAGAGGGAAGGGCTAGCTTTCTTTAATGGCAACTTGAAATCCAGCCCATCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056686.12 ENSMUST00000190457.2 |
||
| CDS-3UTR TCA 90 bp | AAGGTGGTTAATTCCATAGTCAGTATCAAAGATGGGCTGGATTTCAAGTTGCCAGGGTCTGCGCTCGGGTaGGGCTCGGCGCTGGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KVVNSIVSIKDGLDFKLPGSALG*GSALAP Trigger: AGGAGCCAGCGCCGAGCCTCACCCGAGCGCAGACCC...TGGCAACTTGAAATCCAGCCCATCTTTGATACTGACTATGGAATTAACCACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056686.12 |
||
| CDS-3UTR GCA 90 bp | AAAGATGGGCTGGATTTCAAGTTGCCATTAAAGAAAGCTAGCCCTTCCCTCTCTCGTTCGATGTCCCGTTaGATCTTCGCGCCCGCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: KDGLDFKLPLKKASPSLSRSMSR*IFAPAR Trigger: TCGGGCGGGCGCGAAGATGCAACGGGACATCGAACG...AGAGAGGGAAGGGCTAGCTTTCTTTAATGGCAACTTGAAATCCAGCCCATCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS-3UTR TCA 90 bp | TCCATAGTCAGTATCAAAGATGGGCTGGATTTCAAGTTGCCATTAAAGAAAGCTAGCGCCGCCTGCCTGTaGGCCTCGCGTTCGATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SIVSIKDGLDFKLPLKKASAACL*ASRSMS Trigger: GGACATCGAACGCGAGGCTCACAGGCAGGCGGCGCT...AGCTTTCTTTAATGGCAACTTGAAATCCAGCCCATCTTTGATACTGACTATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS GCA 90 bp | TCCTCCGCCGCAGCCTCAAAGAAGCGCTTGAGTTCGTCCAGCGGCTaGGGCCGCCGCCGGGCGCTAGGCTCCGGAACCGCGGGGCTCGCC | + |
|
Preference number: 5 (lower is better) Translates to: SSAAASKKRLSSSSG*GRRRALGSGTAGLA Trigger: GGCGAGCCCCGCGGTTCCGGAGCCTAGCGCCCGGCGGCGGCCGCAGCCGCTGGACGAACTCAAGCGCTTCTTTGAGGCTGCGGCGGAGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS TCA 90 bp | GCGCTAGGCTCCGGAACCGCGGGGCTCGCCAGCGCCGCCTGCCTGTaGGCCTCGCGTTCGATGTCCCGTTGCATCTTCGCGCCCGCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: ALGSGTAGLASAACL*ASRSMSRCIFAPAR Trigger: TCGGGCGGGCGCGAAGATGCAACGGGACATCGAACGCGAGGCTCACAGGCAGGCGGCGCTGGCGAGCCCCGCGGTTCCGGAGCCTAGCGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS CCA 90 bp | AACCTTCATAGACCTCAGGGTCTGCGCTCGGGTGAGGCTCGGCGCTaGCTCCTGGACCTCGGCGTCGCCGTAGATGCTGCGCCGCTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: NLHRPQGLRSGEARR*LLDLGVAVDAAPLQ Trigger: TTGCAGCGGCGCAGCATCTACGGCGACGCCGAGGTCCAGGAGCCAGCGCCGAGCCTCACCCGAGCGCAGACCCTGAGGTCTATGAAGGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056686.12 |
||
| CDS TCA 90 bp | CGCCAGAAGTCAAGGTTCCAAGGTCTGATGGATGTGGGGATCGGGTaGGGCTCGGCGCTGGCTCCTGGACCTCGGCGTCGCCGTAGATGC | + |
|
Preference number: 5 (lower is better) Translates to: RQKSRFQGLMDVGIG*GSALAPGPRRRRRC Trigger: GCATCTACGGCGACGCCGAGGTCCAGGAGCCAGCGCCGAGCCTCACCCGATCCCCACATCCATCAGACCTTGGAACCTTGACTTCTGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188195.2 |
||
| CDS-3UTR CAA 90 bp | GTTAATTCCATAGTCAGTATCAAAGATGGGCTGGATTTCAAGTTGCCATTAAAGGCGTTCGATGTCCCGTaGCATCTTCGCGCCCGCCCG | + |
|
Preference number: 5 (lower is better) Translates to: VNSIVSIKDGLDFKLPLKAFDVP*HLRARP Trigger: CGGGCGGGCGCGAAGATGCAACGGGACATCGAACGC...CTTTAATGGCAACTTGAAATCCAGCCCATCTTTGATACTGACTATGGAATTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS CAA 90 bp | GCTCGCCAGCGCCGCCTGCCTGTGAGCCTCGCGTTCGATGTCCCGTaGCATCTTCGCGCCCGCCCGAGCGCGCTCCAGGGCGCGCGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: ARQRRLPVSLAFDVP*HLRARPSALQGARQ Trigger: CTGCCGCGCGCCCTGGAGCGCGCTCGGGCGGGCGCGAAGATGCAACGGGACATCGAACGCGAGGCTCACAGGCAGGCGGCGCTGGCGAGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS CAA 72 bp | CCAGCGCCGTCCTCCGCCGCAGCCTCAAAGAAGCGCTaGAGTTCGTCCAGCGGCTGCGGCCGCCGCCGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: PAPSSAAASKKR*SSSSGCGRRRA Trigger: CGCCCGGCGGCGGCCGCAGCCGCTGGACGAACTCAAGCGCTTCTTTGAGGCTGCGGCGGAGGACGGCGCTGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS GCA 72 bp | GCGGGGTGCAGCCGGCCTCCGGTCTCTGGCTGCCTCTaGAAGCCAGCGCCGTCCTCCGCCGCAGCCTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: AGCSRPPVSGCL*KPAPSSAAASK Trigger: CTTTGAGGCTGCGGCGGAGGACGGCGCTGGCTTGCAGAGGCAGCCAGAGACCGGAGGCCGGCTGCACCCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056686.12 ENSMUST00000188195.2 ENSMUST00000190457.2 |
||
| CDS CAA 72 bp | CGCCGCCTGCCTGTGAGCCTCGCGTTCGATGTCCCGTaGCATCTTCGCGCCCGCCCGAGCGCGCTCCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: RRLPVSLAFDVP*HLRARPSALQG Trigger: GCCCTGGAGCGCGCTCGGGCGGGCGCGAAGATGCAACGGGACATCGAACGCGAGGCTCACAGGCAGGCGGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185457.2 ENSMUST00000190457.2 |
||
| CDS CAA 90 bp | CTCTGCAAGCCAGCGCCGTCCTCCGCCGCAGCCTCAAAGAAGCGCTaGAGTTCGTCCAGCGGCTGCGGCCGCCGCCGGGCGCTAGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: LCKPAPSSAAASKKR*SSSSGCGRRRALGS Trigger: GGAGCCTAGCGCCCGGCGGCGGCCGCAGCCGCTGGACGAACTCAAGCGCTTCTTTGAGGCTGCGGCGGAGGACGGCGCTGGCTTGCAGAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS GCA 72 bp | GCAGCCTCAAAGAAGCGCTTGAGTTCGTCCAGCGGCTaGGGCCGCCGCCGGGCGCTAGGCTCCGGAACCGCG | + |
|
Preference number: 6 (lower is better) Translates to: AASKKRLSSSSG*GRRRALGSGTA Trigger: CGCGGTTCCGGAGCCTAGCGCCCGGCGGCGGCCGCAGCCGCTGGACGAACTCAAGCGCTTCTTTGAGGCTGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190457.2 |
||
| CDS CCA 72 bp | AGACCTCAGGGTCTGCGCTCGGGTGAGGCTCGGCGCTaGCTCCTGGACCTCGGCGTCGCCGTAGATGCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: RPQGLRSGEARR*LLDLGVAVDAA Trigger: CGCAGCATCTACGGCGACGCCGAGGTCCAGGAGCCAGCGCCGAGCCTCACCCGAGCGCAGACCCTGAGGTCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056686.12 |
||
| CDS TCA 72 bp | CTCGCCGAGAACGCCAGAAGTCAAGGTTCCAAGGTCTaGTGGATGTGGGGATCGGGTGAGGCTCGGCGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LAENARSQGSKV*WMWGSGEARRW Trigger: CCAGCGCCGAGCCTCACCCGATCCCCACATCCATCAGACCTTGGAACCTTGACTTCTGGCGTTCTCGGCGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188195.2 |
||