RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MISP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035852

Ensembl transcript IDs: ENSMUST00000046833.5, ENSMUST00000169041.9, ENSMUST00000218687.2, ENSMUST00000219305.2, ENSMUST00000219734.2

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTaGAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGA +
Preference number: 1 (lower is better)
Translates to: VGKSGMAGPQTEPSF*SDRSKLWAVRRAEG
Trigger: TCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR GCA 90 bp AAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTaGGGAGGGCTGAGGGATGTGAGGGGGATCGGTGGATTATCATTT +
Preference number: 1 (lower is better)
Translates to: KQSLLSAVTDPSSGL*GGLRDVRGIGGLSF
Trigger: AAATGATAATCCACCGATCCCCCTCACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATCGGCCTCCACAGGACTaGAGTGAGGCAGGAGAATGG +
Preference number: 2 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDRPPQD*SEAGEW
Trigger: CCATTCTCCTGCCTCACTGCAGTCCTGTGGAGGCCG...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR TCA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCTCCACAGGACTGCAGTaGGGCAGGAGAATGGCCCCC +
Preference number: 2 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCSTGLQ*GRRMAP
Trigger: GGGGGCCATTCTCCTGCCTCACTGCAGTCCTGTGGA...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTCGGCCTCCACAGGACTaGAGTGAGGCAGGAGAATGG +
Preference number: 2 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSRPPQD*SEAGEW
Trigger: CCATTCTCCTGCCTCACTGCAGTCCTGTGGAGGCCG...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGCATACGTTTGGGGTTaGCAAGAGTGGAATGGCAGG +
Preference number: 2 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIAYVWG*QEWNGR
Trigger: CCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCGGCCTCCACAGGACTaGAGTGAGGCAGGAGAATGG +
Preference number: 2 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVRPPQD*SEAGEW
Trigger: CCATTCTCCTGCCTCACTGCAGTCCTGTGGAGGCCG...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR TCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGATCCACAGGACTGCAGTaGGGCAGGAGAATGGCCCCC +
Preference number: 2 (lower is better)
Translates to: SSGQVYFIATGIRLGLARSTGLQ*GRRMAP
Trigger: GGGGGCCATTCTCCTGCCTCACTGCAGTCCTGTGGA...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCGAAAACCAAATCAACTaGAGGCCACAAACATCAGCC +
Preference number: 2 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFENQIN*RPQTSA
Trigger: GGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTC...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGAAAACCAAATCAACTaGAGGCCACAAACATCAGCC +
Preference number: 2 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSENQIN*RPQTSA
Trigger: GGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTC...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR CCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTTGTGAGGGGGATCGGTaGATTATCATTTCAGCCTTA +
Preference number: 2 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSCEGDR*IIISAL
Trigger: TAAGGCTGAAATGATAATCCACCGATCCCCCTCACA...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR-3UTR GCA 90 bp GCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTACAGAGCCTTCTTTCTaGAGTGACAGATCCAAGCTC +
Preference number: 2 (lower is better)
Translates to: APGRQFRTGLFHSNRHTFTEPSF*SDRSKL
Trigger: GAGCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGT...AAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR GCA 72 bp AGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTaGAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGG +
Preference number: 3 (lower is better)
Translates to: SGMAGPQTEPSF*SDRSKLWAVRR
Trigger: CCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR GCA 72 bp GAATCACTCGCCCACCCCAGGGAAAACCAAATCAACTaGAGGCCACAAACATCAGCCTGGGCTGTATGTTTA +
Preference number: 3 (lower is better)
Translates to: ESLAHPRENQIN*RPQTSAWAVCL
Trigger: TAAACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTGGGCGAGTGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGCCTTGGGGGCTTGGTTaGTGCCTGGTGGGGTTCGTG +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEPWGLG*CLVGFV
Trigger: CACGAACCCCACCAGGCATCAACCAAGCCCCCAAGG...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGTCCAGCTCCCTCCGCTaGCTGCAGAGGGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQESSSLR*LQRVSL
Trigger: CAGTGACACCCTCTGCAGGCAGCGGAGGGAGCTGGA...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGCTCGGGCATCTGGGCTaGGGATGCAATCGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQELGHLG*GCNRSS
Trigger: TGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAG...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGGACTTTCCTTGCCTCTaGAGCCGGGTCTGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEDFPCL*SRVCGS
Trigger: CGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTC...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGCCCCTGGGGGACATCTaGGACCTTGAATCGCAGTGG +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEPLGDI*DLESQW
Trigger: CCACTGCGATTCAAGGTCCCAGATGTCCCCCAGGGG...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATAGGTCTCCCTGGCTGTaGGGCCGCAGGGGACCGGGT +
Preference number: 4 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDRSPWL*GRRGPG
Trigger: ACCCGGTCCCCTGCGGCCTCACAGCCAGGGAGACCT...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGATGCAGCCTGGAGTGTaGCCACTGTGCCACCTTTCC +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEMQPGV*PLCHLS
Trigger: GGAAAGGTGGCACAGTGGCCACACTCCAGGCTGCAT...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGGAAGCCTTGGGGGCTTaGTTGATGCCTGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEEALGA*LMPGGV
Trigger: AACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTC...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGCAGGTGTGGATGCCCTaGCCACCTGCAGCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRQVWMP*PPAAPL
Trigger: GAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTG...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGATCCTGAGGTCCCCATaGTCTGATGCAGCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: AETGGRSSGLHRTAVRQEILRSP*SDAAWS
Trigger: ACTCCAGGCTGCATCAGACCATGGGGACCTCAGGAT...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTGCTCCTGGGCCAGCCTaGTCTCTCTCTCGATGGGCG +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCAPGPA*SLSRWA
Trigger: CGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGC...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGCTCCCTCCGCTGCCTaGAGAGGGTGTCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRAPSAA*RGCHCC
Trigger: ACAGCAGTGACACCCTCTGCAGGCAGCGGAGGGAGC...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTCCAGTCAGGTGTGGATaGCCTGCCCACCTGCAGCCC +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCPVRCG*PAHLQP
Trigger: GGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGG...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGAGGTCCCCATGGTCTaGTGCAGCCTGGAGTGTGGC +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIEVPMV*CSLECG
Trigger: GCCACACTCCAGGCTGCATCAGACCATGGGGACCTC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTAGGTCTCCCTGGCTGTaGGGCCGCAGGGGACCGGGT +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCRSPWL*GRRGPG
Trigger: ACCCGGTCCCCTGCGGCCTCACAGCCAGGGAGACCT...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTCCTTGGGGGCTTGGTTaGTGCCTGGTGGGGTTCGTG +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCPWGLG*CLVGFV
Trigger: CACGAACCCCACCAGGCATCAACCAAGCCCCCAAGG...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGCTCCCTCCGCTGCCTaGAGAGGGTGTCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIAPSAA*RGCHCC
Trigger: ACAGCAGTGACACCCTCTGCAGGCAGCGGAGGGAGC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCCAGCTCCCTCCGCTaGCTGCAGAGGGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFISSSLR*LQRVSL
Trigger: CAGTGACACCCTCTGCAGGCAGCGGAGGGAGCTGGA...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATCGCCCAAGCCCTCTCTaGTCCCTCAGCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDRPSPL*SLSSAS
Trigger: AGAGGCAGAGCTGAGGGAGCAGAGAGGGCTTGGGCG...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGCCTGCAGATCACCCTaGCTCCAACCAGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIACRSP*LQPASG
Trigger: GCCTGAGGCTGGTTGGAGCCAGGGTGATCTGCAGGC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTCTAGGTGGGGCCCAGTaGAAGCCTTGGGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFILGGAQ*KPWGLG
Trigger: ACCAAGCCCCCAAGGCTTCCACTGGGCCCCACCTAG...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGACTTTCCTTGCCTCTaGAGCCGGGTCTGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRDFPCL*SRVCGS
Trigger: CGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTC...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATAGTGACCTCGGGGACTaGTGGCCAAGGAAGACGCGT +
Preference number: 4 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDSDLGD*WPRKTR
Trigger: ACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACT...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTCCAGCTCCCTCCGCTaGCTGCAGAGGGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFSSSLR*LQRVSL
Trigger: CAGTGACACCCTCTGCAGGCAGCGGAGGGAGCTGGA...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTCAGGTGTGGATGCCCTaGCCACCTGCAGCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSQVWMP*PPAAPL
Trigger: GAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTG...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTCAGGTGTGGATGCCCTaGCCACCTGCAGCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSQVWMP*PPAAPL
Trigger: GAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTG...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTCCAGTCAGGTGTGGATaGCCTGCCCACCTGCAGCCC +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSPVRCG*PAHLQP
Trigger: GGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGG...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTACCAGTCAGGTGTGGATaGCCTGCCCACCTGCAGCCC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVPVRCG*PAHLQP
Trigger: GGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGG...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGATGCAGCCTGGAGTGTaGCCACTGTGCCACCTTTCC +
Preference number: 4 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRMQPGV*PLCHLS
Trigger: GGAAAGGTGGCACAGTGGCCACACTCCAGGCTGCAT...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATTCTGCCTCTCGCTCCTaGGCCAGCCTGATCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDSASRS*ASLISL
Trigger: GAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGA...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTGACTTTCCTTGCCTCTaGAGCCGGGTCTGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCDFPCL*SRVCGS
Trigger: CGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTC...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACCCAGTACCAAGCTGGTaGCACGTGCTGAGCGGGGGT +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDPVPSW*HVLSGG
Trigger: ACCCCCGCTCAGCACGTGTCACCAGCTTGGTACTGG...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAAGGTCTCCCTGGCTGTaGGGCCGCAGGGGACCGGGT +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATRSPWL*GRRGPG
Trigger: ACCCGGTCCCCTGCGGCCTCACAGCCAGGGAGACCT...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCCTTGGGGGCTTGGTTaGTGCCTGGTGGGGTTCGTG +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSPWGLG*CLVGFV
Trigger: CACGAACCCCACCAGGCATCAACCAAGCCCCCAAGG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCATCTGTACCAGCTCTTaGTGCCCGGCAGCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFICTSS*CPAARP
Trigger: TGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGAT...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCTCCCTCCGCTGCCTaGAGAGGGTGTCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSAPSAA*RGCHCC
Trigger: ACAGCAGTGACACCCTCTGCAGGCAGCGGAGGGAGC...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCGCCCAAGCCCTCTCTaGTCCCTCAGCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTERPSPL*SLSSAS
Trigger: AGAGGCAGAGCTGAGGGAGCAGAGAGGGCTTGGGCG...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCGCCAGTGATGCCAGATaGCCGGGAGGAACTCCGGGA +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSASDAR*PGGTPG
Trigger: TCCCGGAGTTCCTCCCGGGCATCTGGCATCACTGGC...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGGCCTGGTGGGGTTCGTaGGAAGGTCTCCCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTEAWWGS*EGLPGC
Trigger: ACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGC...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGCCTGGTGGGGTTCGTaGGAAGGTCTCCCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSAWWGS*EGLPGC
Trigger: ACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGC...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCTAGGTGGGGCCCAGTaGAAGCCTTGGGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSLGGAQ*KPWGLG
Trigger: ACCAAGCCCCCAAGGCTTCCACTGGGCCCCACCTAG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATCGATGGGCGTCTCTTTaGGGGTCTCAGGGGATTCTG +
Preference number: 4 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDRWASL*GSQGIL
Trigger: CAGAATCCCCTGAGACCCCCAAAGAGACGCCCATCG...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTGCCTTGGAGACTCCGTaGCCTTCTGGAAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCALETP*PSGRLW
Trigger: CCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGC...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTGAGGTCCCCATGGTCTaGTGCAGCCTGGAGTGTGGC +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCEVPMV*CSLECG
Trigger: GCCACACTCCAGGCTGCATCAGACCATGGGGACCTC...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGCTCCTGGGCCAGCCTaGTCTCTCTCTCGATGGGCG +
Preference number: 4 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVAPGPA*SLSRWA
Trigger: CGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGC...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCCCAGTGGGATCCGGTTaGCTTTCCTTGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFPVGSG*LSLPLE
Trigger: CTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGG...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACCTCGGGGACTaGTGGCCAAGGAAGACGCGT +
Preference number: 4 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCSDLGD*WPRKTR
Trigger: ACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACT...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAAGTGACCTCGGGGACTaGTGGCCAAGGAAGACGCGT +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVSDLGD*WPRKTR
Trigger: ACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACT...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACGGTCTCAGGGGATTCTaGCTGGGTCTGACTGCCAGG +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDGLRGF*LGLTAR
Trigger: CCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACC...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCGGTCTCAGGGGATTCTaGCTGGGTCTGACTGCCAGG +
Preference number: 4 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCGLRGF*LGLTAR
Trigger: CCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACC...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGAGGATTCTGAGACATaGCTTGGAGACTCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIEDSET*LGDSVA
Trigger: GGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTGCCAGTGATGCCAGATaGCCGGGAGGAACTCCGGGA +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCASDAR*PGGTPG
Trigger: TCCCGGAGTTCCTCCCGGGCATCTGGCATCACTGGC...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCCGATGGGCGTCTCTTTaGGGGTCTCAGGGGATTCTG +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFRWASL*GSQGIL
Trigger: CAGAATCCCCTGAGACCCCCAAAGAGACGCCCATCG...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTCTGCCTCTCGCTCCTaGGCCAGCCTGATCTCTCTC +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTESASRS*ASLISL
Trigger: GAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGACCCCTGGGGGACATCTaGGACCTTGAATCGCAGTGG +
Preference number: 4 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRPLGDI*DLESQW
Trigger: CCACTGCGATTCAAGGTCCCAGATGTCCCCCAGGGG...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAGCTCTCATCCTCGGCTaGCACTGGGGAGAACACCTC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVALILG*HWGEHL
Trigger: GAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGC...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACCAGTACCAAGCTGGTaGCACGTGCTGAGCGGGGGT +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIPVPSW*HVLSGG
Trigger: ACCCCCGCTCAGCACGTGTCACCAGCTTGGTACTGG...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGGAGGTCCCCATGGTCTaGTGCAGCCTGGAGTGTGGC +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWEVPMV*CSLECG
Trigger: GCCACACTCCAGGCTGCATCAGACCATGGGGACCTC...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTATCTGTACCAGCTCTTaGTGCCCGGCAGCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCICTSS*CPAARP
Trigger: TGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGAT...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCTCAAGCTCATCTTGCTaGGCAGTGGCCTGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSSSSSC*AVACWG
Trigger: TCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGA...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTCAAGCTCATCTTGCTaGGCAGTGGCCTGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTESSSSC*AVACWG
Trigger: TCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATCAAGCTCATCTTGCTaGGCAGTGGCCTGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVSSSSC*AVACWG
Trigger: TCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGA...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTCTCGGGCATCTGGGCTaGGGATGCAATCGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCLGHLG*GCNRSS
Trigger: TGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAG...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTCCAGTGGGATCCGGTTaGCTTTCCTTGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSPVGSG*LSLPLE
Trigger: CTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGG...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCCAGTGGGATCCGGTTaGCTTTCCTTGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSPVGSG*LSLPLE
Trigger: CTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTCTGCCGGAGGATTCTaGGACATGCCTTGGAGACTC +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFSAGGF*DMPWRL
Trigger: GAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGA...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTGGCTTGGACCACTCTTaGTTTGAGCTCAGCGATCTG +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCGLDHS*FELSDL
Trigger: CAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCC...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTCCTTCCTAGTCTTCTaGCCTGGGGGAGCACTGTCC +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTESFLVF*PGGALS
Trigger: GGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACTCCTTCCTAGTCTTCTaGCCTGGGGGAGCACTGTCC +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDSFLVF*PGGALS
Trigger: GGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGA...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTCCTTCCTAGTCTTCTaGCCTGGGGGAGCACTGTCC +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSSFLVF*PGGALS
Trigger: GGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGA...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGCCTGCAGATCACCCTaGCTCCAACCAGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVACRSP*LQPASG
Trigger: GCCTGAGGCTGGTTGGAGCCAGGGTGATCTGCAGGC...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATAGCCTGCAGATCACCCTaGCTCCAACCAGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIACRSP*LQPASG
Trigger: GCCTGAGGCTGGTTGGAGCCAGGGTGATCTGCAGGC...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTCCTTTCCTGACTGCCTaGCTCTGGATGACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSPFLTA*LWMTAQ
Trigger: CTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGG...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCCTTTCCTGACTGCCTaGCTCTGGATGACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSPFLTA*LWMTAQ
Trigger: CTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGGCCTGGTGGGGTTCGTaGGAAGGTCTCCCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWAWWGS*EGLPGC
Trigger: ACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGC...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGGCTTGGTTGATGCCTaGTGGGGTTCGTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSGLVDA*WGSWEG
Trigger: ACCTTCCCACGAACCCCACCAGGCATCAACCAAGCC...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGAAGCCTTGGGGGCTTaGTTGATGCCTGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSEALGA*LMPGGV
Trigger: AACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTC...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCGATGGGCGTCTCTTTaGGGGTCTCAGGGGATTCTG +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSRWASL*GSQGIL
Trigger: CAGAATCCCCTGAGACCCCCAAAGAGACGCCCATCG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCTGCCTCTCGCTCCTaGGCCAGCCTGATCTCTCTC +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCSASRS*ASLISL
Trigger: GAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTCTGGTAGGCATCCAGTaGGATCCGGTTGACTTTCCT +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFILVGIQ*DPVDFP
Trigger: AGGAAAGTCAACCGGATCCCACTGGATGCCTACCAG...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTGGAGACTCCGTaGCCTTCTGGAAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRALETP*PSGRLW
Trigger: CCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGC...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAATCCTCGGCTGGCACTaGGGAGAACACCTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRILGWH*GEHLWE
Trigger: TTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGAT...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAATCCTCGGCTGGCACTaGGGAGAACACCTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVILGWH*GEHLWE
Trigger: TTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGAT...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACGTTGTCTGGCAATCCTaGGGTCCCCATGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDVVWQS*GPHGLM
Trigger: CATCAGACCATGGGGACCTCAGGATTGCCAGACAAC...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAGTTGTCTGGCAATCCTaGGGTCCCCATGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVVVWQS*GPHGLM
Trigger: CATCAGACCATGGGGACCTCAGGATTGCCAGACAAC...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCGTTGTCTGGCAATCCTaGGGTCCCCATGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSVVWQS*GPHGLM
Trigger: CATCAGACCATGGGGACCTCAGGATTGCCAGACAAC...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACACGCCCAAGCCCTCTCTaGTCCCTCAGCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATRPSPL*SLSSAS
Trigger: AGAGGCAGAGCTGAGGGAGCAGAGAGGGCTTGGGCG...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAGAGGATTCTGAGACATaGCTTGGAGACTCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVEDSET*LGDSVA
Trigger: GGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTC...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGCCAGTGATGCCAGATaGCCGGGAGGAACTCCGGGA +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATASDAR*PGGTPG
Trigger: TCCCGGAGTTCCTCCCGGGCATCTGGCATCACTGGC...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCATCCTGAGGTCCCCATaGTCTGATGCAGCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSILRSP*SDAAWS
Trigger: ACTCCAGGCTGCATCAGACCATGGGGACCTCAGGAT...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCATCCTGAGGTCCCCATaGTCTGATGCAGCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCILRSP*SDAAWS
Trigger: ACTCCAGGCTGCATCAGACCATGGGGACCTCAGGAT...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTGGTTGATGCCTGGTaGGGTTCGTGGGAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSLVDAW*GSWEGL
Trigger: GAGACCTTCCCACGAACCCCACCAGGCATCAACCAA...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTTGGTTGATGCCTGGTaGGGTTCGTGGGAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTELVDAW*GSWEGL
Trigger: GAGACCTTCCCACGAACCCCACCAGGCATCAACCAA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTGGCTTGGTTGATGCCTaGTGGGGTTCGTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCGLVDA*WGSWEG
Trigger: ACCTTCCCACGAACCCCACCAGGCATCAACCAAGCC...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTACATCTTGCTGAGCAGTaGCCTGCTGGGGATCTGTAC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVHLAEQ*PAGDLY
Trigger: GTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATG...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCATCTTGCTGAGCAGTaGCCTGCTGGGGATCTGTAC +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTEHLAEQ*PAGDLY
Trigger: GTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATG...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCCTTTGGTGTCTTCGGTaGAGACACCACTTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFLWCLR*RHHLAC
Trigger: GCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAG...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGGGGAGAACACCTCTaGGAAGAAAGCATTCCTCCG +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFWGEHL*EESIPP
Trigger: CGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCA...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGGCTCTCATCCTCGGCTaGCACTGGGGAGAACACCTC +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWALILG*HWGEHL
Trigger: GAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGC...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATAGCTCTCATCCTCGGCTaGCACTGGGGAGAACACCTC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIALILG*HWGEHL
Trigger: GAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGC...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCTGCCGGAGGATTCTaGGACATGCCTTGGAGACTC +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCSAGGF*DMPWRL
Trigger: GAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACTGCAGAGGGTGTCACTaGTGTCGTCCAGGTGATAAG +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDCRGCH*CRPGDK
Trigger: CTTATCACCTGGACGACAGCAGTGACACCCTCTGCA...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp TCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGTTCTAAGCTCAGGAATTaGTGTCGAGCAGCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SFCSDRSKLWAVRRAEGCSKLRN*CRAARK
Trigger: TTTCCTGGCTGCTCGACAGCAATTCCTGAGCTTAGA...ACATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGGCTTGGACCACTCTTaGTTTGAGCTCAGCGATCTG +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSGLDHS*FELSDL
Trigger: CAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCC...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGCCTTTCCTGACTGCCTaGCTCTGGATGACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWPFLTA*LWMTAQ
Trigger: CTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGG...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATAATGCAGCCTGGAGTGTaGCCACTGTGCCACCTTTCC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIMQPGV*PLCHLS
Trigger: GGAAAGGTGGCACAGTGGCCACACTCCAGGCTGCAT...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCCTGGTAGGCATCCAGTaGGATCCGGTTGACTTTCCT +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSLVGIQ*DPVDFP
Trigger: AGGAAAGTCAACCGGATCCCACTGGATGCCTACCAG...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCCTTTGGTGTCTTCGGTaGAGACACCACTTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCLWCLR*RHHLAC
Trigger: GCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAG...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCGGAAGACTGTGGCTTTaGTGTCTTCGGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSGRLWL*CLRWRH
Trigger: GTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCC...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAGGAAGACTGTGGCTTTaGTGTCTTCGGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVGRLWL*CLRWRH
Trigger: GTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCC...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACACCCCTGGGGGACATCTaGGACCTTGAATCGCAGTGG +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATPLGDI*DLESQW
Trigger: CCACTGCGATTCAAGGTCCCAGATGTCCCCCAGGGG...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTTTGTAGCCTCAATATaGGGCCTCCAGCCACTTCCC +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTEFVASI*GLQPLP
Trigger: GGGAAGTGGCTGGAGGCCCCATATTGAGGCTACAAA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGATCCTCGGCTGGCACTaGGGAGAACACCTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWILGWH*GEHLWE
Trigger: TTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGAT...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATATCTGCCGGAGGATTCTaGGACATGCCTTGGAGACTC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGISAGGF*DMPWRL
Trigger: GAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGA...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGTGTTCTCTTTACATCTaGTCTGGTCTGGTACTCAGT +
Preference number: 4 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRCSLYI*SGLVLS
Trigger: ACTGAGTACCAGACCAGACCAGATGTAAAGAGAACA...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTTTGGTTGATGCCTGGTaGGGTTCGTGGGAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVLVDAW*GSWEGL
Trigger: GAGACCTTCCCACGAACCCCACCAGGCATCAACCAA...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCTTGGTTGATGCCTaGTGGGGTTCGTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATGLVDA*WGSWEG
Trigger: ACCTTCCCACGAACCCCACCAGGCATCAACCAAGCC...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGAAGCCTTGGGGGCTTaGTTGATGCCTGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATEALGA*LMPGGV
Trigger: AACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTC...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGACTAGGTGGGGCCCAGTaGAAGCCTTGGGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARLGGAQ*KPWGLG
Trigger: ACCAAGCCCCCAAGGCTTCCACTGGGCCCCACCTAG...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACCTAGCTGGGGAAACATaGAAAGACTTCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDLAGET*KDFSRV
Trigger: GACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAG...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTGGAAGACTGTGGCTTTaGTGTCTTCGGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCGRLWL*CLRWRH
Trigger: GTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCC...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTCCTTCTGGAAGACTGTaGCTTTGGTGTCTTCGGTGG +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCPSGRL*LWCLRW
Trigger: CCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGG...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGCCTTGGAGACTCCGTaGCCTTCTGGAAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: APGRQFRTGLFHSNRHTFALETP*PSGRLW
Trigger: CCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGC...AAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTTTGTAGCCTCAATATaGGGCCTCCAGCCACTTCCC +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCFVASI*GLQPLP
Trigger: GGGAAGTGGCTGGAGGCCCCATATTGAGGCTACAAA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCAGTTTTCATCCTCGCTaGCATAGATGTGTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFSFHPR*HRCVLP
Trigger: GGGAAGCACACATCTATGCCAGCGAGGATGAAAACT...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGAATCTGTACCAGCTCTTaGTGCCCGGCAGCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARICTSS*CPAARP
Trigger: TGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGAT...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR TCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGACTCGGGCATCTGGGCTaGGGATGCAATCGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARLGHLG*GCNRSS
Trigger: TGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAG...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTCTAAGCTCAGGAATTaGTGTCGAGCAGCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSSKLRN*CRAARK
Trigger: TTTCCTGGCTGCTCGACAGCAATTCCTGAGCTTAGA...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGAGGATTCTGAGACATaGCTTGGAGACTCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATEDSET*LGDSVA
Trigger: GGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTC...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGGGCTTGGACCACTCTTaGTTTGAGCTCAGCGATCTG +
Preference number: 4 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWGLDHS*FELSDL
Trigger: CAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCC...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTATGGATGGATCTAGCTaGGGAAACATGGAAAGACTT +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIMDGSS*GNMERL
Trigger: AAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCAT...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGGATCATTGACTATATaGATGGATCTAGCTGGGGAA +
Preference number: 4 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIGSLTI*MDLAGE
Trigger: TTCCCCAGCTAGATCCATCCATATAGTCAATGATCC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACACATCTTGCTGAGCAGTaGCCTGCTGGGGATCTGTAC +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATHLAEQ*PAGDLY
Trigger: GTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATG...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCTGGTAGGCATCCAGTaGGATCCGGTTGACTTTCCT +
Preference number: 4 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVLVGIQ*DPVDFP
Trigger: AGGAAAGTCAACCGGATCCCACTGGATGCCTACCAG...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGGGTGGAGACACCACTTaGCTTGCTGTATACTCCAAA +
Preference number: 4 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTEGGDTT*LAVYSK
Trigger: TTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACC...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATATTTGTAGCCTCAATATaGGGCCTCCAGCCACTTCCC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIFVASI*GLQPLP
Trigger: GGGAAGTGGCTGGAGGCCCCATATTGAGGCTACAAA...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATATGGGGAGAACACCTCTaGGAAGAAAGCATTCCTCCG +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIWGEHL*EESIPP
Trigger: CGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCA...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAAGTTTTCATCCTCGCTaGCATAGATGTGTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: HPRENQINCRPQTSAWAVSFHPR*HRCVLP
Trigger: GGGAAGCACACATCTATGCCAGCGAGGATGAAAACT...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTAGTTTTCATCCTCGCTaGCATAGATGTGTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSSFHPR*HRCVLP
Trigger: GGGAAGCACACATCTATGCCAGCGAGGATGAAAACT...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACTAGCTGGGGAAACATaGAAAGACTTCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: PLLQAGSSGQVYFIATGILAGET*KDFSRV
Trigger: GACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAG...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTCCTTCTGGAAGACTGTaGCTTTGGTGTCTTCGGTGG +
Preference number: 4 (lower is better)
Translates to: APGRQFRTGLFHSNRHTFPSGRL*LWCLRW
Trigger: CCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGG...AAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp GCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTTGGGGAGAACACCTCTaGGAAGAAAGCATTCCTCCG +
Preference number: 4 (lower is better)
Translates to: APGRQFRTGLFHSNRHTFWGEHL*EESIPP
Trigger: CGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCA...AAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
3UTR CAA 72 bp CAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTaGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGC +
Preference number: 4 (lower is better)
Translates to: QVYFIATGIRLG*ARVEWQVPKQS
Trigger: GCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAATGGATGGATCTAGCTaGGGAAACATGGAAAGACTT +
Preference number: 4 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRMDGSS*GNMERL
Trigger: AAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCAT...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGATGCAGAGGGTGTCACTaGTGTCGTCCAGGTGATAAG +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARCRGCH*CRPGDK
Trigger: CTTATCACCTGGACGACAGCAGTGACACCCTCTGCA...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR GCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACATCTAAGCTCAGGAATTaGTGTCGAGCAGCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATSKLRN*CRAARK
Trigger: TTTCCTGGCTGCTCGACAGCAATTCCTGAGCTTAGA...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGTTCTCTTTACATCTaGTCTGGTCTGGTACTCAGT +
Preference number: 4 (lower is better)
Translates to: PRENQINCRPQTSAWAVCCSLYI*SGLVLS
Trigger: ACTGAGTACCAGACCAGACCAGATGTAAAGAGAACA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp ACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGTGGAGACACCACTTaGCTTGCTGTATACTCCAAA +
Preference number: 4 (lower is better)
Translates to: THPLLQAGSSGQVYFIATGGDTT*LAVYSK
Trigger: TTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACC...TGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGGATCATTGACTATATaGATGGATCTAGCTGGGGAA +
Preference number: 4 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVGSLTI*MDLAGE
Trigger: TTCCCCAGCTAGATCCATCCATATAGTCAATGATCC...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGAGGTGGAGACACCACTTaGCTTGCTGTATACTCCAAA +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARGGDTT*LAVYSK
Trigger: TTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACC...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGAATGGATGGATCTAGCTaGGGAAACATGGAAAGACTT +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARMDGSS*GNMERL
Trigger: AAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCAT...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CCA 90 bp AGTTCAGGACAGGTTTATTTCATAGCAACAGGCATACGTTTGGGGTTGGCAAGAGGATCATTGACTATATaGATGGATCTAGCTGGGGAA +
Preference number: 4 (lower is better)
Translates to: SSGQVYFIATGIRLGLARGSLTI*MDLAGE
Trigger: TTCCCCAGCTAGATCCATCCATATAGTCAATGATCC...TCTTGCCAACCCCAAACGTATGCCTGTTGCTATGAAATAAACCTGTCCTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp GCCTGGAGTGTGGCCACTGTGCCACCTTTCCTGACTGCCTGGCTCTaGATGACTGCCCAGCGCTCAGCCTCCAGCTCCCTCCGCTGCCTG +
Preference number: 5 (lower is better)
Translates to: AWSVATVPPFLTAWL*MTAQRSASSSLRCL
Trigger: CAGGCAGCGGAGGGAGCTGGAGGCTGAGCGCTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGGTGGCACAGTGGCCACACTCCAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS TCA 90 bp GGGCTGAGGATGCAATCGGAGCTCAGGCTTCTCTGGAGCCCAGGCTaGGGGTCCTGGGAAGGCCAGTCAGGTGTGGATGCCCTGCCCACC +
Preference number: 5 (lower is better)
Translates to: GLRMQSELRLLWSPG*GSWEGQSGVDALPT
Trigger: GGTGGGCAGGGCATCCACACCTGACTGGCCTTCCCAGGACCCTCAGCCTGGGCTCCAGAGAAGCCTGAGCTCCGATTGCATCCTCAGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 90 bp CTGGAGCCCAGGCTGAGGGTCCTGGGAAGGCCAGTCAGGTGTGGATaGCCTGCCCACCTGCAGCCCCTCTCGTCGATGATCTTCTTCCCG +
Preference number: 5 (lower is better)
Translates to: LEPRLRVLGRPVRCG*PAHLQPLSSMIFFP
Trigger: CGGGAAGAAGATCATCGACGAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGGCCTTCCCAGGACCCTCAGCCTGGGCTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp GCTCGCCCAAGCCCTCTCTGCTCCCTCAGCTCTGCCTCTCGCTCCTaGGCCAGCCTGATCTCTCTCTCGATGGGCGTCTCTTTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: ARPSPLCSLSSASRS*ASLISLSMGVSLGV
Trigger: GACCCCCAAAGAGACGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGAGCTGAGGGAGCAGAGAGGGCTTGGGCGAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp GCCCTCTCTGCTCCCTCAGCTCTGCCTCTCGCTCCTGGGCCAGCCTaGTCTCTCTCTCGATGGGCGTCTCTTTGGGGGTCTCAGGGGATT +
Preference number: 5 (lower is better)
Translates to: ALSAPSALPLAPGPA*SLSRWASLWGSQGI
Trigger: AATCCCCTGAGACCCCCAAAGAGACGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGAGCTGAGGGAGCAGAGAGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp CTTTCCTTGCCTCTGGAGCCGGGTCTGTGGCTCGGGCATCTGGGCTaGGGATGCAATCGGAGCTCAGGCTTCTCTGGAGCCCAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: LSLPLEPGLWLGHLG*GCNRSSGFSGAQAE
Trigger: CTCAGCCTGGGCTCCAGAGAAGCCTGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGTCGATGGGCGTCTCTTaGGGGGTCTCAGGGGATTCT +
Preference number: 5 (lower is better)
Translates to: AETGGRSSGLHRTAVRQESMGVS*GVSGDS
Trigger: AGAATCCCCTGAGACCCCCAAAGAGACGCCCATCGA...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp CTCATCTTGCTGAGCAGTGGCCTGCTGGGGATCTGTACCAGCTCTTaGTGCCCGGCAGCTCGCCCAAGCCCTCTCTGCTCCCTCAGCTCT +
Preference number: 5 (lower is better)
Translates to: LILLSSGLLGICTSS*CPAARPSPLCSLSS
Trigger: AGAGCTGAGGGAGCAGAGAGGGCTTGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp GTTGACTTTCCTTGCCTCTGGAGCCGGGTCTGTGGCTCGGGCATCTaGGCTGAGGATGCAATCGGAGCTCAGGCTTCTCTGGAGCCCAGG +
Preference number: 5 (lower is better)
Translates to: VDFPCLWSRVCGSGI*AEDAIGAQASLEPR
Trigger: CCTGGGCTCCAGAGAAGCCTGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp CCAGTGATGCCAGATGCCCGGGAGGAACTCCGGGAGTCTTGCTCATaGCTCTCATCCTCGGCTGGCACTGGGGAGAACACCTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: PVMPDAREELRESCS*LSSSAGTGENTSGK
Trigger: CTTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGCCATGAGCAAGACTCCCGGAGTTCCTCCCGGGCATCTGGCATCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp TCCCAGGGCCTAGATATGGCTGGTAGGCATCCAGTGGGATCCGGTTaGCTTTCCTTGCCTCTGGAGCCGGGTCTGTGGCTCGGGCATCTG +
Preference number: 5 (lower is better)
Translates to: SQGLDMAGRHPVGSG*LSLPLEPGLWLGHL
Trigger: CAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCCTACCAGCCATATCTAGGCCCTGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp TGGCTGGTAGGCATCCAGTGGGATCCGGTTGACTTTCCTTGCCTCTaGAGCCGGGTCTGTGGCTCGGGCATCTGGGCTGAGGATGCAATC +
Preference number: 5 (lower is better)
Translates to: WLVGIQWDPVDFPCL*SRVCGSGIWAEDAI
Trigger: GATTGCATCCTCAGCCCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCCTACCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGGAAGCCTTGGGGGCTaGGTTGATGCCTGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRGSLGG*VDAWWG
Trigger: ACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCC...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GCAGAGACTGGGGGCAGGTCTAGCGGCCTCCACAGGACTGCAGTGAGGCAGGAGTCCGCCAAGAGATTCTaGTGCCGCTTTACCCTTGTG +
Preference number: 5 (lower is better)
Translates to: AETGGRSSGLHRTAVRQESAKRF*CRFTLV
Trigger: CACAAGGGTAAAGCGGCACAAGAATCTCTTGGCGGA...CTCCTGCCTCACTGCAGTCCTGTGGAGGCCGCTAGACCTGCCCCCAGTCTCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGGAAGCCTTGGGGGCTaGGTTGATGCCTGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIGSLGG*VDAWWG
Trigger: ACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GGCTGCCTGCGACACATCCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTGGCCCAGTGGAAGCCTaGGGGGCTTGGTTGATGCCT +
Preference number: 5 (lower is better)
Translates to: GCLRHILCSRQAVQDRFIGPVEA*GAWLMP
Trigger: AGGCATCAACCAAGCCCCCAAGGCTTCCACTGGGCC...AATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGGATGTGTCGCAGGCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp CAGTCAGGTGTGGATGCCCTGCCCACCTGCAGCCCCTCTCGTCGATaGTCTTCTTCCCGCTGTGTCTCTTGCACCATGTCCCTTTGCACA +
Preference number: 5 (lower is better)
Translates to: QSGVDALPTCSPSRR*SSSRCVSCTMSLCT
Trigger: TGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAAGAAGATCATCGACGAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp GTCTCTTCGTGGAGGTGTCTCTGTCAAGCTCATCTTGCTGAGCAGTaGCCTGCTGGGGATCTGTACCAGCTCTTGATGCCCGGCAGCTCG +
Preference number: 5 (lower is better)
Translates to: VSSWRCLCQAHLAEQ*PAGDLYQLLMPGSS
Trigger: CGAGCTGCCGGGCATCAAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGACAGAGACACCTCCACGAAGAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp GGAACTCCGGGAGTCTTGCTCATGGCTCTCATCCTCGGCTGGCACTaGGGAGAACACCTCTGGGAAGAAAGCATTCCTCCGCTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: GTPGVLLMALILGWH*GEHLWEESIPPLFS
Trigger: GCTGAAGAGCGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGCCATGAGCAAGACTCCCGGAGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTAGCCTTGGGGGCTTGGTaGATGCCTGGTGGGGTTCGT +
Preference number: 5 (lower is better)
Translates to: HPRENQINCRPQTSAWAVALGAW*MPGGVR
Trigger: ACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGC...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTGGGGGCTTGGTaGATGCCTGGTGGGGTTCGT +
Preference number: 5 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRALGAW*MPGGVR
Trigger: ACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGC...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGCCTTGGGGGCTTGGTaGATGCCTGGTGGGGTTCGT +
Preference number: 5 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSALGAW*MPGGVR
Trigger: ACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGC...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGGAAGCCTTGGGGGCTaGGTTGATGCCTGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSGSLGG*VDAWWG
Trigger: ACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCC...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCGGCCCAGTGGAAGCCTaGGGGGCTTGGTTGATGCCT +
Preference number: 5 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCGPVEA*GAWLMP
Trigger: AGGCATCAACCAAGCCCCCAAGGCTTCCACTGGGCC...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp TTCCCGCTGTGTCTCTTGCACCATGTCCCTTTGCACATAGAGGGATaGGCGGCCCCTGTCTCTTCGTGGAGGTGTCTCTGTCAAGCTCAT +
Preference number: 5 (lower is better)
Translates to: FPLCLLHHVPLHIEG*AAPVSSWRCLCQAH
Trigger: ATGAGCTTGACAGAGACACCTCCACGAAGAGACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp TCAGCGATCTGCCGGAGGATTCTGAGACATGCCTTGGAGACTCCGTaGCCTTCTGGAAGACTGTGGCTTTGGTGTCTTCGGTGGAGACAC +
Preference number: 5 (lower is better)
Translates to: SAICRRILRHALETP*PSGRLWLWCLRWRH
Trigger: GTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGGATGACTGTGGACTGAGGTaGTCTGGCAATCCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: LLSAVTDPSSGLCGGLRDDCGLR*SGNPEV
Trigger: GACCTCAGGATTGCCAGACAACCTCAGTCCACAGTC...ATCCCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTGGCCCAGTGGAAGCCTaGGGGGCTTGGTTGATGCCT +
Preference number: 5 (lower is better)
Translates to: PRENQINCRPQTSAWAVCGPVEA*GAWLMP
Trigger: AGGCATCAACCAAGCCCCCAAGGCTTCCACTGGGCC...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp AGCCTTCTTTCTGCAGTGACAGATCCAAGCTCTGGGCTGTGCGGAGGGCTGAGGTGGAAGACTGTGGCTTaGGTGTCTTCGGTGGAGACA +
Preference number: 5 (lower is better)
Translates to: SLLSAVTDPSSGLCGGLRWKTVA*VSSVET
Trigger: TGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCA...CCTCAGCCCTCCGCACAGCCCAGAGCTTGGATCTGTCACTGCAGAAAGAAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTGTGCCGCTTTACCCTaGTGGCTCCCAGGACCTCTG +
Preference number: 5 (lower is better)
Translates to: HTFGVGKSGMAGPQTEPSCAALP*WLPGPL
Trigger: CAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCACA...AGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACTGTGCCGCTTTACCCTaGTGGCTCCCAGGACCTCTG +
Preference number: 5 (lower is better)
Translates to: VGKSGMAGPQTEPSFCSDCAALP*WLPGPL
Trigger: CAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCACA...GTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 90 bp CACTCTTGCTTTGAGCTCAGCGATCTGCCGGAGGATTCTGAGACATaGCTTGGAGACTCCGTGGCCTTCTGGAAGACTGTGGCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: HSCFELSDLPEDSET*LGDSVAFWKTVALV
Trigger: CACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGAGCTCAAAGCAAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 90 bp CTTTTCCAGGAGGCTTGGACCACTCTTGCTTTGAGCTCAGCGATCTaGCGGAGGATTCTGAGACATGCCTTGGAGACTCCGTGGCCTTCT +
Preference number: 5 (lower is better)
Translates to: LFQEAWTTLALSSAI*RRILRHALETPWPS
Trigger: AGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp TTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCTCGATGGGCGTCTCTTaGGGGGTCTCAGGGGATTCT +
Preference number: 5 (lower is better)
Translates to: FGVGKSGMAGPQTEPSFCSMGVS*GVSGDS
Trigger: AGAATCCCCTGAGACCCCCAAAGAGACGCCCATCGA...GCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGTGCCGCTTTACCCTaGTGGCTCCCAGGACCTCTG +
Preference number: 5 (lower is better)
Translates to: PRENQINCRPQTSAWAVCCAALP*WLPGPL
Trigger: CAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCACA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp GGTGTAGCTGGTATCTTCATCCAGTACCAAGCTGGTGACACGTGCTaGGCGGGGGTTGCTGAAGATGGGGTATCTGGTCACTCGATCCAT +
Preference number: 5 (lower is better)
Translates to: GVAGIFIQYQAGDTC*AGVAEDGVSGHSIH
Trigger: ATGGATCGAGTGACCAGATACCCCATCTTCAGCAACCCCCGCTCAGCACGTGTCACCAGCTTGGTACTGGATGAAGATACCAGCTACACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS TCA 90 bp TCAATTTGCTCCGTGTCCACCAAGATCTCCTCTGTGACTGTGGACTaGGGTTGTCTGGCAATCCTGAGGTCCCCATGGTCTGATGCAGCC +
Preference number: 5 (lower is better)
Translates to: SICSVSTKISSVTVD*GCLAILRSPWSDAA
Trigger: GGCTGCATCAGACCATGGGGACCTCAGGATTGCCAGACAACCTCAGTCCACAGTCACAGAGGAGATCTTGGTGGACACGGAGCAAATTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS GCA 90 bp ACCACACCCACGTTGGTAGCTTTTCCAGGAGGCTTGGACCACTCTTaGTTTGAGCTCAGCGATCTGCCGGAGGATTCTGAGACATGCCTT +
Preference number: 5 (lower is better)
Translates to: TTPTLVAFPGGLDHS*FELSDLPEDSETCL
Trigger: AAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGTGGGTGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CAACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGACTGTGGACTGAGGTaGTCTGGCAATCCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: QQAYVWGWQEWNGRSPNRDCGLR*SGNPEV
Trigger: GACCTCAGGATTGCCAGACAACCTCAGTCCACAGTC...TCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCGATGGGCGTCTCTTaGGGGGTCTCAGGGGATTCT +
Preference number: 5 (lower is better)
Translates to: PRENQINCRPQTSAWAVCSMGVS*GVSGDS
Trigger: AGAATCCCCTGAGACCCCCAAAGAGACGCCCATCGA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTGGAAGACTGTGGCTTaGGTGTCTTCGGTGGAGACA +
Preference number: 5 (lower is better)
Translates to: AYVWGWQEWNGRSPNRAFWKTVA*VSSVET
Trigger: TGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCA...GAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 90 bp AAACATGGAAAGACTTCTCCAGGGTCACTTCCTTCATTGGTGACGTaGCGGCAGTGGTATAGCCATTGGCTAGGTGGGGCCCAGTGGAAG +
Preference number: 5 (lower is better)
Translates to: KHGKTSPGSLPSLVT*RQWYSHWLGGAQWK
Trigger: CTTCCACTGGGCCCCACCTAGCCAATGGCTATACCACTGCCGTCACGTCACCAATGAAGGAAGTGACCCTGGAGAAGTCTTTCCATGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS GCA 90 bp GATCTCTCTCTCGATGGGCGTCTCTTTGGGGGTCTCAGGGGATTCTaGCTGGGTCTGACTGCCAGGATCATTGACTATATGGATGGATCT +
Preference number: 5 (lower is better)
Translates to: DLSLDGRLFGGLRGF*LGLTARIIDYMDGS
Trigger: AGATCCATCCATATAGTCAATGATCCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACCCCCAAAGAGACGCCCATCGAGAGAGAGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp AGACATGCCTTGGAGACTCCGTGGCCTTCTGGAAGACTGTGGCTTTaGTGTCTTCGGTGGAGACACCACTTGGCTTGCTGTATACTCCAA +
Preference number: 5 (lower is better)
Translates to: RHALETPWPSGRLWL*CLRWRHHLACCILQ
Trigger: TTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp AACAGGCATACGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGTGGAAGACTGTGGCTTaGGTGTCTTCGGTGGAGACA +
Preference number: 5 (lower is better)
Translates to: NRHTFGVGKSGMAGPQTEWKTVA*VSSVET
Trigger: TGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCA...CTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACGTATGCCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp GTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCAGTGACAGATCCAAGCGCTTTTCCAGGAGGCTaGGACCACTCTTGCTTTGAG +
Preference number: 5 (lower is better)
Translates to: VEWQVPKQSLLSAVTDPSAFPGG*DHSCFE
Trigger: CTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGC...GCTTGGATCTGTCACTGCAGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CGTTTGGGGTTGGCAAGAGTGGAATGGCAGGTCCCCAAACAGAGCCTTCTTTCTGCTTTTCCAGGAGGCTaGGACCACTCTTGCTTTGAG +
Preference number: 5 (lower is better)
Translates to: RLGLARVEWQVPKQSLLSAFPGG*DHSCFE
Trigger: CTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGC...AGAAAGAAGGCTCTGTTTGGGGACCTGCCATTCCACTCTTGCCAACCCCAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CACCCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATCCGCCAAGAGATTCTaGTGCCGCTTTACCCTTGTG +
Preference number: 5 (lower is better)
Translates to: HPRENQINCRPQTSAWAVSAKRF*CRFTLV
Trigger: CACAAGGGTAAAGCGGCACAAGAATCTCTTGGCGGA...TACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp AAGGAAGACGCGTCTGTTGGAAGACACGTTTGTTCTCTTTACATCTaGTCTGGTCTGGTACTCAGTGGACCAGGCCTGCAGATCACCCTG +
Preference number: 5 (lower is better)
Translates to: KEDASVGRHVCSLYI*SGLVLSGPGLQITL
Trigger: CAGGGTGATCTGCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 90 bp AGTACAGTGACCTCGGGGACTGCTGGCCAAGGAAGACGCGTCTGTTaGAAGACACGTTTGTTCTCTTTACATCTGGTCTGGTCTGGTACT +
Preference number: 5 (lower is better)
Translates to: STVTSGTAGQGRRVC*KTRLFSLHLVWSGT
Trigger: AGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACTGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 90 bp GAGACTCCGTGGCCTTCTGGAAGACTGTGGCTTTGGTGTCTTCGGTaGAGACACCACTTGGCTTGCTGTATACTCCAAAGGCTGAGAATT +
Preference number: 5 (lower is better)
Translates to: ETPWPSGRLWLWCLR*RHHLACCILQRLRI
Trigger: AATTCTCAGCCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCTCTGCTCCAGGCAGGCAGTTCAGGACAGGTTTATTTCATAGCAACAGGCATAGACTGTGGACTGAGGTaGTCTGGCAATCCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: PLLQAGSSGQVYFIATGIDCGLR*SGNPEV
Trigger: GACCTCAGGATTGCCAGACAACCTCAGTCCACAGTC...TATGCCTGTTGCTATGAAATAAACCTGTCCTGAACTGCCTGCCTGGAGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp AGGCCACAAACATCAGCCTGGGCTGTATGTTTAAATAGGGACAGCAGAGACTGGCGCAGGGGACCGGGTTaGTGTTTGCCTTTTCTAAGC +
Preference number: 5 (lower is better)
Translates to: RPQTSAWAVCLNRDSRDWRRGPG*CLPFLS
Trigger: GCTTAGAAAAGGCAAACACAAACCCGGTCCCCTGCG...CCAGTCTCTGCTGTCCCTATTTAAACATACAGCCCAGGCTGATGTTTGTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCGCAGGGGACCGGGTTaGTGTTTGCCTTTTCTAAGC +
Preference number: 5 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVRRGPG*CLPFLS
Trigger: GCTTAGAAAAGGCAAACACAAACCCGGTCCCCTGCG...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS-3UTR CAA 90 bp CCCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTCCGCCAAGAGATTCTaGTGCCGCTTTACCCTTGTG +
Preference number: 5 (lower is better)
Translates to: PRENQINCRPQTSAWAVCSAKRF*CRFTLV
Trigger: CACAAGGGTAAAGCGGCACAAGAATCTCTTGGCGGA...ACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 90 bp TTTATCTCCTCATCCTCATCTTCCAAGTACAGTGACCTCGGGGACTaGTGGCCAAGGAAGACGCGTCTGTTGGAAGACACGTTTGTTCTC +
Preference number: 5 (lower is better)
Translates to: FISSSSSSKYSDLGD*WPRKTRLLEDTFVL
Trigger: GAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACTGTACTTGGAAGATGAGGATGAGGAGATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS-3UTR CAA 90 bp CCAGGGAAAACCAAATCAACTGCAGGCCACAAACATCAGCCTGGGCTGTATGTTGCTTTTCCAGGAGGCTaGGACCACTCTTGCTTTGAG +
Preference number: 5 (lower is better)
Translates to: PGKTKSTAGHKHQPGLYVAFPGG*DHSCFE
Trigger: CTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGC...AACATACAGCCCAGGCTGATGTTTGTGGCCTGCAGTTGATTTGGTTTTCCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 90 bp CTGCCAGGATCATTGACTATATGGATGGATCTAGCTGGGGAAACATaGAAAGACTTCTCCAGGGTCACTTCCTTCATTGGTGACGTGACG +
Preference number: 5 (lower is better)
Translates to: LPGSLTIWMDLAGET*KDFSRVTSFIGDVT
Trigger: CGTCACGTCACCAATGAAGGAAGTGACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCATATAGTCAATGATCCTGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CCA 90 bp CTGGGTCTGACTGCCAGGATCATTGACTATATGGATGGATCTAGCTaGGGAAACATGGAAAGACTTCTCCAGGGTCACTTCCTTCATTGG +
Preference number: 5 (lower is better)
Translates to: LGLTARIIDYMDGSS*GNMERLLQGHFLHW
Trigger: CCAATGAAGGAAGTGACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCATATAGTCAATGATCCTGGCAGTCAGACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS GCA 72 bp CTGCCCAGCGCTCAGCCTCCAGCTCCCTCCGCTGCCTaGAGAGGGTGTCACTGCTGTCGTCCAGGTGATAAG +
Preference number: 6 (lower is better)
Translates to: LPSAQPPAPSAA*RGCHCCRPGDK
Trigger: CTTATCACCTGGACGACAGCAGTGACACCCTCTGCAGGCAGCGGAGGGAGCTGGAGGCTGAGCGCTGGGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS GCA 72 bp AGGCTGAGGGTCCTGGGAAGGCCAGTCAGGTGTGGATaGCCTGCCCACCTGCAGCCCCTCTCGTCGATGATC +
Preference number: 6 (lower is better)
Translates to: RLRVLGRPVRCG*PAHLQPLSSMI
Trigger: GATCATCGACGAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGGCCTTCCCAGGACCCTCAGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GTCTGGTACTCAGTGGACCAGGCCTGCAGATCACCCTaGCTCCAACCAGCCTCAGGCCCCACGCCCACTAGC +
Preference number: 6 (lower is better)
Translates to: VWYSVDQACRSP*LQPASGPTPTS
Trigger: GCTAGTGGGCGTGGGGCCTGAGGCTGGTTGGAGCCAGGGTGATCTGCAGGCCTGGTCCACTGAGTACCAGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 72 bp GTGGCCACTGTGCCACCTTTCCTGACTGCCTGGCTCTaGATGACTGCCCAGCGCTCAGCCTCCAGCTCCCTC +
Preference number: 6 (lower is better)
Translates to: VATVPPFLTAWL*MTAQRSASSSL
Trigger: GAGGGAGCTGGAGGCTGAGCGCTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGGTGGCACAGTGGCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CCA 72 bp CCCAGTGGAAGCCTTGGGGGCTTGGTTGATGCCTGGTaGGGTTCGTGGGAAGGTCTCCCTGGCTGTGAGGCC +
Preference number: 6 (lower is better)
Translates to: PSGSLGGLVDAW*GSWEGLPGCEA
Trigger: GGCCTCACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCCACTGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CCA 72 bp GGGCCCAGTGGAAGCCTTGGGGGCTTGGTTGATGCCTaGTGGGGTTCGTGGGAAGGTCTCCCTGGCTGTGAG +
Preference number: 6 (lower is better)
Translates to: GPSGSLGGLVDA*WGSWEGLPGCE
Trigger: CTCACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCCACTGGGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS GCA 72 bp AGCCTGGAGTGTGGCCACTGTGCCACCTTTCCTGACTaGCTGGCTCTGGATGACTGCCCAGCGCTCAGCCTC +
Preference number: 6 (lower is better)
Translates to: SLECGHCATFPD*LALDDCPALSL
Trigger: GAGGCTGAGCGCTGGGCAGTCATCCAGAGCCAGGCAGTCAGGAAAGGTGGCACAGTGGCCACACTCCAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CCA 72 bp AGCCCTCTCTGCTCCCTCAGCTCTGCCTCTCGCTCCTaGGCCAGCCTGATCTCTCTCTCGATGGGCGTCTCT +
Preference number: 6 (lower is better)
Translates to: SPLCSLSSASRS*ASLISLSMGVS
Trigger: AGAGACGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGAGCTGAGGGAGCAGAGAGGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp CCTTGCCTCTGGAGCCGGGTCTGTGGCTCGGGCATCTaGGCTGAGGATGCAATCGGAGCTCAGGCTTCTCTG +
Preference number: 6 (lower is better)
Translates to: PCLWSRVCGSGI*AEDAIGAQASL
Trigger: CAGAGAAGCCTGAGCTCCGATTGCATCCTCAGCCCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GGCATCCAGTGGGATCCGGTTGACTTTCCTTGCCTCTaGAGCCGGGTCTGTGGCTCGGGCATCTGGGCTGAG +
Preference number: 6 (lower is better)
Translates to: GIQWDPVDFPCL*SRVCGSGIWAE
Trigger: CTCAGCCCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp GCTCATCTTGCTGAGCAGTGGCCTGCTGGGGATCTGTACCAGCTCTaGATGCCCGGCAGCTCGCCCAAGCCCTCTCTGCTCCCTCAGCTC +
Preference number: 6 (lower is better)
Translates to: AHLAEQWPAGDLYQL*MPGSSPKPSLLPQL
Trigger: GAGCTGAGGGAGCAGAGAGGGCTTGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 72 bp TGCCTGGTGGGGTTCGTGGGAAGGTCTCCCTGGCTGTaGGGCCGCAGGGGACCGGGTTTGTGTTTGCCTTTT +
Preference number: 6 (lower is better)
Translates to: CLVGFVGRSPWL*GRRGPGLCLPF
Trigger: AAAAGGCAAACACAAACCCGGTCCCCTGCGGCCTCACAGCCAGGGAGACCTTCCCACGAACCCCACCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS TCA 72 bp ATGCAATCGGAGCTCAGGCTTCTCTGGAGCCCAGGCTaGGGGTCCTGGGAAGGCCAGTCAGGTGTGGATGCC +
Preference number: 6 (lower is better)
Translates to: MQSELRLLWSPG*GSWEGQSGVDA
Trigger: GGCATCCACACCTGACTGGCCTTCCCAGGACCCTCAGCCTGGGCTCCAGAGAAGCCTGAGCTCCGATTGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 72 bp GAGGGTCCTGGGAAGGCCAGTCAGGTGTGGATGCCCTaGCCACCTGCAGCCCCTCTCGTCGATGATCTTCTT +
Preference number: 6 (lower is better)
Translates to: EGPGKASQVWMP*PPAAPLVDDLL
Trigger: AAGAAGATCATCGACGAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGGCCTTCCCAGGACCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 72 bp CTGGTAGGCATCCAGTGGGATCCGGTTGACTTTCCTTaGCTCTGGAGCCGGGTCTGTGGCTCGGGCATCTGG +
Preference number: 6 (lower is better)
Translates to: LVGIQWDPVDFP*LWSRVCGSGIW
Trigger: CCAGATGCCCGAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCCTACCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp AGTGATGCCAGATGCCCGGGAGGAACTCCGGGAGTCTaGCTCATGGCTCTCATCCTCGGCTGGCACTGGGGA +
Preference number: 6 (lower is better)
Translates to: SDARCPGGTPGV*LMALILGWHWG
Trigger: TCCCCAGTGCCAGCCGAGGATGAGAGCCATGAGCAAGACTCCCGGAGTTCCTCCCGGGCATCTGGCATCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp CACCTGCAGCCCCTCTCGTCGATGATCTTCTTCCCGCTGTGTCTCTaGCACCATGTCCCTTTGCACATAGAGGGATGGGCGGCCCCTGTC +
Preference number: 6 (lower is better)
Translates to: HLQPLSSMIFFPLCL*HHVPLHIEGWAAPV
Trigger: GACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAAGAAGATCATCGACGAGAGGGGCTGCAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GCTCTCATCCTCGGCTGGCACTGGGGAGAACACCTCTaGGAAGAAAGCATTCCTCCGCTCTTCAGCCACCTC +
Preference number: 6 (lower is better)
Translates to: ALILGWHWGEHL*EESIPPLFSHL
Trigger: GAGGTGGCTGAAGAGCGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp ACCTGCATACCACATCTCCTTCCTAGTCTTCTGCCCTaGGGGAGCACTGTCCTCAGGGGCCTCCACCTTCCA +
Preference number: 6 (lower is better)
Translates to: TCIPHLLPSLLP*GSTVLRGLHLP
Trigger: TGGAAGGTGGAGGCCCCTGAGGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGAGATGTGGTATGCAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 72 bp CTAGATATGGCTGGTAGGCATCCAGTGGGATCCGGTTaGCTTTCCTTGCCTCTGGAGCCGGGTCTGTGGCTC +
Preference number: 6 (lower is better)
Translates to: LDMAGRHPVGSG*LSLPLEPGLWL
Trigger: GAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCCTACCAGCCATATCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 72 bp TTGATACCTGCATACCACATCTCCTTCCTAGTCTTCTaGCCTGGGGGAGCACTGTCCTCAGGGGCCTCCACC +
Preference number: 6 (lower is better)
Translates to: LIPAYHISFLVF*PGGALSSGAST
Trigger: GGTGGAGGCCCCTGAGGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGAGATGTGGTATGCAGGTATCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GGAGTCTTGCTCATGGCTCTCATCCTCGGCTGGCACTaGGGAGAACACCTCTGGGAAGAAAGCATTCCTCCG +
Preference number: 6 (lower is better)
Translates to: GVLLMALILGWH*GEHLWEESIPP
Trigger: CGGAGGAATGCTTTCTTCCCAGAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGCCATGAGCAAGACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp TCGTCGATGATCTTCTTCCCGCTGTGTCTCTTGCACCATGTCCCTTaGCACATAGAGGGATGGGCGGCCCCTGTCTCTTCGTGGAGGTGT +
Preference number: 6 (lower is better)
Translates to: SSMIFFPLCLLHHVP*HIEGWAAPVSSWRC
Trigger: ACACCTCCACGAAGAGACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAAGAAGATCATCGACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 72 bp CCTTCCACACCAGCCCCGAATTCAGGTGGACGGGGGTaGAGAGTGGTGATTCTGACACTGAATAGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: PSTPAPNSGGRG*RVVILTLNSCQ
Trigger: CTGGCAGCTATTCAGTGTCAGAATCACCACTCTTCACCCCCGTCCACCTGAATTCGGGGCTGGTGTGGAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TGGAGGTGTCTCTGTCAAGCTCATCTTGCTGAGCAGTaGCCTGCTGGGGATCTGTACCAGCTCTTGATGCCC +
Preference number: 6 (lower is better)
Translates to: WRCLCQAHLAEQ*PAGDLYQLLMP
Trigger: GGGCATCAAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGACAGAGACACCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TGTCTCTTGCACCATGTCCCTTTGCACATAGAGGGATaGGCGGCCCCTGTCTCTTCGTGGAGGTGTCTCTGT +
Preference number: 6 (lower is better)
Translates to: CLLHHVPLHIEG*AAPVSSWRCLC
Trigger: ACAGAGACACCTCCACGAAGAGACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GCAGGTCAGATGACTGTGACTTTTGTAGCCTCAATATaGGGCCTCCAGCCACTTCCCAGCCCCAGGTATGGG +
Preference number: 6 (lower is better)
Translates to: AGQMTVTFVASI*GLQPLPSPRYG
Trigger: CCCATACCTGGGGCTGGGAAGTGGCTGGAGGCCCCATATTGAGGCTACAAAAGTCACAGTCATCTGACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp ATCTTCTTCCCGCTGTGTCTCTTGCACCATGTCCCTTaGCACATAGAGGGATGGGCGGCCCCTGTCTCTTCG +
Preference number: 6 (lower is better)
Translates to: IFFPLCLLHHVP*HIEGWAAPVSS
Trigger: CGAAGAGACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAAGAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp CCCCTCTCGTCGATGATCTTCTTCCCGCTGTGTCTCTaGCACCATGTCCCTTTGCACATAGAGGGATGGGCG +
Preference number: 6 (lower is better)
Translates to: PLSSMIFFPLCL*HHVPLHIEGWA
Trigger: CGCCCATCCCTCTATGTGCAAAGGGACATGGTGCAAGAGACACAGCGGGAAGAAGATCATCGACGAGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp AGCTCAGCGATCTGCCGGAGGATTCTGAGACATGCCTaGGAGACTCCGTGGCCTTCTGGAAGACTGTGGCTT +
Preference number: 6 (lower is better)
Translates to: SSAICRRILRHA*ETPWPSGRLWL
Trigger: AAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGAGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp CTCACCACACCCACGTTGGTAGCTTTTCCAGGAGGCTaGGACCACTCTTGCTTTGAGCTCAGCGATCTGCCG +
Preference number: 6 (lower is better)
Translates to: LTTPTLVAFPGG*DHSCFELSDLP
Trigger: CGGCAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGTGGGTGTGGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp ACCCTTGTGGCTCCCAGGACCTCTGAGTTGACACTGTCTGAGGGGTaGATACCTGCATACCACATCTCCTTCCTAGTCTTCTGCCCTGGG +
Preference number: 6 (lower is better)
Translates to: TLVAPRTSELTLSEG*IPAYHISFLVFCPG
Trigger: CCCAGGGCAGAAGACTAGGAAGGAGATGTGGTATGCAGGTATCAACCCCTCAGACAGTGTCAACTCAGAGGTCCTGGGAGCCACAAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 72 bp GGTATCTTCATCCAGTACCAAGCTGGTGACACGTGCTaGGCGGGGGTTGCTGAAGATGGGGTATCTGGTCAC +
Preference number: 6 (lower is better)
Translates to: GIFIQYQAGDTC*AGVAEDGVSGH
Trigger: GTGACCAGATACCCCATCTTCAGCAACCCCCGCTCAGCACGTGTCACCAGCTTGGTACTGGATGAAGATACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS TCA 72 bp TCCGTGTCCACCAAGATCTCCTCTGTGACTGTGGACTaGGGTTGTCTGGCAATCCTGAGGTCCCCATGGTCT +
Preference number: 6 (lower is better)
Translates to: SVSTKISSVTVD*GCLAILRSPWS
Trigger: AGACCATGGGGACCTCAGGATTGCCAGACAACCTCAGTCCACAGTCACAGAGGAGATCTTGGTGGACACGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS TCA 72 bp AAGACTTCTCCAGGGTCACTTCCTTCATTGGTGACGTaGCGGCAGTGGTATAGCCATTGGCTAGGTGGGGCC +
Preference number: 6 (lower is better)
Translates to: KTSPGSLPSLVT*RQWYSHWLGGA
Trigger: GGCCCCACCTAGCCAATGGCTATACCACTGCCGTCACGTCACCAATGAAGGAAGTGACCCTGGAGAAGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS TCA 72 bp CTCTTCGTGGAGGTGTCTCTGTCAAGCTCATCTTGCTaGGCAGTGGCCTGCTGGGGATCTGTACCAGCTCTT +
Preference number: 6 (lower is better)
Translates to: LFVEVSLSSSSC*AVACWGSVPAL
Trigger: AAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGAGCTTGACAGAGACACCTCCACGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 72 bp TCATCCTCATCTTCCAAGTACAGTGACCTCGGGGACTaGTGGCCAAGGAAGACGCGTCTGTTGGAAGACACG +
Preference number: 6 (lower is better)
Translates to: SSSSSKYSDLGD*WPRKTRLLEDT
Trigger: CGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACTGTACTTGGAAGATGAGGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS GCA 72 bp CTCGATGGGCGTCTCTTTGGGGGTCTCAGGGGATTCTaGCTGGGTCTGACTGCCAGGATCATTGACTATATG +
Preference number: 6 (lower is better)
Translates to: LDGRLFGGLRGF*LGLTARIIDYM
Trigger: CATATAGTCAATGATCCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACCCCCAAAGAGACGCCCATCGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TTGGAGACTCCGTGGCCTTCTGGAAGACTGTGGCTTTaGTGTCTTCGGTGGAGACACCACTTGGCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: LETPWPSGRLWL*CLRWRHHLACC
Trigger: ACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 72 bp TGCCGCTTTACCCTTGTGGCTCCCAGGACCTCTGAGTaGACACTGTCTGAGGGGTTGATACCTGCATACCAC +
Preference number: 6 (lower is better)
Translates to: CRFTLVAPRTSE*TLSEGLIPAYH
Trigger: GTGGTATGCAGGTATCAACCCCTCAGACAGTGTCAACTCAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp CTTGCTTTGAGCTCAGCGATCTGCCGGAGGATTCTGAGACATGCCTaGGAGACTCCGTGGCCTTCTGGAAGACTGTGGCTTTGGTGTCTT +
Preference number: 6 (lower is better)
Translates to: LALSSAICRRILRHA*ETPWPSGRLWLWCL
Trigger: AAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCAGATCGCTGAGCTCAAAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp CGCAGTGGACGCAGGTGGAAATTCCCTAATCTCACCACACCCACGTaGGTAGCTTTTCCAGGAGGCTTGGACCACTCTTGCTTTGAGCTC +
Preference number: 6 (lower is better)
Translates to: RSGRRWKFPNLTTPT*VAFPGGLDHSCFEL
Trigger: GAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGTGGGTGTGGTGAGATTAGGGAATTTCCACCTGCGTCCACTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS GCA 72 bp ACGTTGGTAGCTTTTCCAGGAGGCTTGGACCACTCTTaGTTTGAGCTCAGCGATCTGCCGGAGGATTCTGAG +
Preference number: 6 (lower is better)
Translates to: TLVAFPGGLDHS*FELSDLPEDSE
Trigger: CTCAGAATCCTCCGGCAGATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TTGTTCTCTTTACATCTGGTCTGGTCTGGTACTCAGTaGACCAGGCCTGCAGATCACCCTGGCTCCAACCAG +
Preference number: 6 (lower is better)
Translates to: LFSLHLVWSGTQ*TRPADHPGSNQ
Trigger: CTGGTTGGAGCCAGGGTGATCTGCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 72 bp ACCTCGGGGACTGCTGGCCAAGGAAGACGCGTCTGTTaGAAGACACGTTTGTTCTCTTTACATCTGGTCTGG +
Preference number: 6 (lower is better)
Translates to: TSGTAGQGRRVC*KTRLFSLHLVW
Trigger: CCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CAA 72 bp GACCTCGGGGACTGCTGGCCAAGGAAGACGCGTCTGTaGGAAGACACGTTTGTTCTCTTTACATCTGGTCTG +
Preference number: 6 (lower is better)
Translates to: DLGDCWPRKTRL*EDTFVLFTSGL
Trigger: CAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CAA 72 bp CGCAGGTGGAAATTCCCTAATCTCACCACACCCACGTaGGTAGCTTTTCCAGGAGGCTTGGACCACTCTTGC +
Preference number: 6 (lower is better)
Translates to: RRWKFPNLTTPT*VAFPGGLDHSC
Trigger: GCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGTGGGTGTGGTGAGATTAGGGAATTTCCACCTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp GAAGACACGTTTGTTCTCTTTACATCTGGTCTGGTCTaGTACTCAGTGGACCAGGCCTGCAGATCACCCTGG +
Preference number: 6 (lower is better)
Translates to: EDTFVLFTSGLV*YSVDQACRSPW
Trigger: CCAGGGTGATCTGCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 72 bp GCGTCTGTTGGAAGACACGTTTGTTCTCTTTACATCTaGTCTGGTCTGGTACTCAGTGGACCAGGCCTGCAG +
Preference number: 6 (lower is better)
Translates to: ASVGRHVCSLYI*SGLVLSGPGLQ
Trigger: CTGCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CCA 72 bp TGGCCTTCTGGAAGACTGTGGCTTTGGTGTCTTCGGTaGAGACACCACTTGGCTTGCTGTATACTCCAAAGG +
Preference number: 6 (lower is better)
Translates to: WPSGRLWLWCLR*RHHLACCILQR
Trigger: CCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCAGAAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CAA 90 bp AAGTACAGTGACCTCGGGGACTGCTGGCCAAGGAAGACGCGTCTGTaGGAAGACACGTTTGTTCTCTTTACATCTGGTCTGGTCTGGTAC +
Preference number: 6 (lower is better)
Translates to: KYSDLGDCWPRKTRL*EDTFVLFTSGLVWY
Trigger: GTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGCGTCTTCCTTGGCCAGCAGTCCCCGAGGTCACTGTACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CAA 90 bp AGATTCTTGTGCCGCTTTACCCTTGTGGCTCCCAGGACCTCTGAGTaGACACTGTCTGAGGGGTTGATACCTGCATACCACATCTCCTTC +
Preference number: 6 (lower is better)
Translates to: RFLCRFTLVAPRTSE*TLSEGLIPAYHISF
Trigger: GAAGGAGATGTGGTATGCAGGTATCAACCCCTCAGACAGTGTCAACTCAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCACAAGAATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS TCA 72 bp GTCTCTTTGGGGGTCTCAGGGGATTCTGCCTGGGTCTaGCTGCCAGGATCATTGACTATATGGATGGATCTA +
Preference number: 6 (lower is better)
Translates to: VSLGVSGDSAWV*LPGSLTIWMDL
Trigger: TAGATCCATCCATATAGTCAATGATCCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACCCCCAAAGAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS GCA 72 bp CTCAGGAATTGCTGTCGAGCAGCCAGGAAATCAATTTaGTCCGTGTCCACCAAGATCTCCTCTGTGACTGTG +
Preference number: 6 (lower is better)
Translates to: LRNCCRAARKSI*SVSTKISSVTV
Trigger: CACAGTCACAGAGGAGATCTTGGTGGACACGGAGCAAATTGATTTCCTGGCTGCTCGACAGCAATTCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CAA 90 bp TGGAAGACTGTGGCTTTGGTGTCTTCGGTGGAGACACCACTTGGCTaGCTGTATACTCCAAAGGCTGAGAATTCTAGTTTAGGGGTCCCA +
Preference number: 6 (lower is better)
Translates to: WKTVALVSSVETPLG*LYTPKAENSSLGVP
Trigger: TGGGACCCCTAAACTAGAATTCTCAGCCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TGTTGGAAGACACGTTTGTTCTCTTTACATCTGGTCTaGTCTGGTACTCAGTGGACCAGGCCTGCAGATCAC +
Preference number: 6 (lower is better)
Translates to: CWKTRLFSLHLV*SGTQWTRPADH
Trigger: GTGATCTGCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
ENSMUST00000219734.2
CDS CAA 72 bp AGACTGTGGCTTTGGTGTCTTCGGTGGAGACACCACTaGGCTTGCTGTATACTCCAAAGGCTGAGAATTCTA +
Preference number: 6 (lower is better)
Translates to: RLWLWCLRWRHH*ACCILQRLRIL
Trigger: TAGAATTCTCAGCCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCACAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp ACTGCCAGGATCATTGACTATATGGATGGATCTAGCTaGGGAAACATGGAAAGACTTCTCCAGGGTCACTTC +
Preference number: 6 (lower is better)
Translates to: TARIIDYMDGSS*GNMERLLQGHF
Trigger: GAAGTGACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCATATAGTCAATGATCCTGGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2
CDS CAA 72 bp GTGGCTTTGGTGTCTTCGGTGGAGACACCACTTGGCTaGCTGTATACTCCAAAGGCTGAGAATTCTAGTTTA +
Preference number: 6 (lower is better)
Translates to: VALVSSVETPLG*LYTPKAENSSL
Trigger: TAAACTAGAATTCTCAGCCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACCGAAGACACCAAAGCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000219305.2
CDS CCA 72 bp TCATTGACTATATGGATGGATCTAGCTGGGGAAACATaGAAAGACTTCTCCAGGGTCACTTCCTTCATTGGT +
Preference number: 6 (lower is better)
Translates to: SLTIWMDLAGET*KDFSRVTSFIG
Trigger: ACCAATGAAGGAAGTGACCCTGGAGAAGTCTTTCCATGTTTCCCCAGCTAGATCCATCCATATAGTCAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046833.5
ENSMUST00000169041.9
ENSMUST00000218687.2
ENSMUST00000219305.2