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Pregenerated sensors for MIS18A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022978

Ensembl transcript IDs: ENSMUST00000099554.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTTGGTGTCCTCCTGGCTGGCCACCCAGGTGAGCGAGTCGCCCAGTaGCCGGCGACAGCGGGCACAAAGGAACACCAGCGGGTTCTCCGC +
Preference number: 5 (lower is better)
Translates to: VGVLLAGHPGERVAQ*PATAGTKEHQRVLR
Trigger: GCGGAGAACCCGCTGGTGTTCCTTTGTGCCCGCTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS TCA 90 bp TGCGCAACAGGATGCAGTTGGTGTCCTCCTGGCTGGCCACCCAGGTaGGCGAGTCGCCCAGTGGCCGGCGACAGCGGGCACAAAGGAACA +
Preference number: 5 (lower is better)
Translates to: CATGCSWCPPGWPPR*ASRPVAGDSGHKGT
Trigger: TGTTCCTTTGTGCCCGCTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCCTGTTGCGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CCA 90 bp ACGTTACAGGAGACGCTGCGCAACAGGATGCAGTTGGTGTCCTCCTaGCTGGCCACCCAGGTGAGCGAGTCGCCCAGTGGCCGGCGACAG +
Preference number: 5 (lower is better)
Translates to: TLQETLRNRMQLVSS*LATQVSESPSGRRQ
Trigger: CTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCCTGTTGCGCAGCGTCTCCTGTAACGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS GCA 90 bp AGCCCGTGCAGTACAGCGCCTCAAGGATGCAACCGTCTTCATCTCTaGACTTGGACAGTTTCGGTTCCTTATCCACAGAGACGTTACAGG +
Preference number: 5 (lower is better)
Translates to: SPCSTAPQGCNRLHL*TWTVSVPYPQRRYR
Trigger: CCTGTAACGTCTCTGTGGATAAGGAACCGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGCTGTACTGCACGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CCA 90 bp TGCAGTACAGCGCCTCAAGGATGCAACCGTCTTCATCTCTGCACTTaGACAGTTTCGGTTCCTTATCCACAGAGACGTTACAGGAGACGC +
Preference number: 5 (lower is better)
Translates to: CSTAPQGCNRLHLCT*TVSVPYPQRRYRRR
Trigger: GCGTCTCCTGTAACGTCTCTGTGGATAAGGAACCGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGCTGTACTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS TCA 72 bp GGATGCAGTTGGTGTCCTCCTGGCTGGCCACCCAGGTaGGCGAGTCGCCCAGTGGCCGGCGACAGCGGGCAC +
Preference number: 6 (lower is better)
Translates to: GCSWCPPGWPPR*ASRPVAGDSGH
Trigger: GTGCCCGCTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CCA 72 bp CTCCTGGCTGGCCACCCAGGTGAGCGAGTCGCCCAGTaGCCGGCGACAGCGGGCACAAAGGAACACCAGCGG +
Preference number: 6 (lower is better)
Translates to: LLAGHPGERVAQ*PATAGTKEHQR
Trigger: CCGCTGGTGTTCCTTTGTGCCCGCTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CCA 72 bp GAGACGCTGCGCAACAGGATGCAGTTGGTGTCCTCCTaGCTGGCCACCCAGGTGAGCGAGTCGCCCAGTGGC +
Preference number: 6 (lower is better)
Translates to: ETLRNRMQLVSS*LATQVSESPSG
Trigger: GCCACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCCTGTTGCGCAGCGTCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 90 bp CAGGCCGTTCCTTCTCTAGCCCTAACGCGTCTGCGCTCGACATGTTaGCCCACTTCTGCAGCCGCAGGTAGCGGCTCGAGTCTTCCGACA +
Preference number: 6 (lower is better)
Translates to: QAVPSLALTRLRSTC*PTSAAAGSGSSLPT
Trigger: TGTCGGAAGACTCGAGCCGCTACCTGCGGCTGCAGAAGTGGGCAAACATGTCGAGCGCAGACGCGTTAGGGCTAGAGAAGGAACGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 90 bp TTATCCACAGAGACGTTACAGGAGACGCTGCGCAACAGGATGCAGTaGGTGTCCTCCTGGCTGGCCACCCAGGTGAGCGAGTCGCCCAGT +
Preference number: 6 (lower is better)
Translates to: LSTETLQETLRNRMQ*VSSWLATQVSESPS
Trigger: ACTGGGCGACTCGCTCACCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCCTGTTGCGCAGCGTCTCCTGTAACGTCTCTGTGGATAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 90 bp GTGCAGTACAGCGCCTCAAGGATGCAACCGTCTTCATCTCTGCACTaGGACAGTTTCGGTTCCTTATCCACAGAGACGTTACAGGAGACG +
Preference number: 6 (lower is better)
Translates to: VQYSASRMQPSSSLH*DSFGSLSTETLQET
Trigger: CGTCTCCTGTAACGTCTCTGTGGATAAGGAACCGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGCTGTACTGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CCA 72 bp GCGCCTCAAGGATGCAACCGTCTTCATCTCTGCACTTaGACAGTTTCGGTTCCTTATCCACAGAGACGTTAC +
Preference number: 6 (lower is better)
Translates to: APQGCNRLHLCT*TVSVPYPQRRY
Trigger: GTAACGTCTCTGTGGATAAGGAACCGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 72 bp AGCGCCTCAAGGATGCAACCGTCTTCATCTCTGCACTaGGACAGTTTCGGTTCCTTATCCACAGAGACGTTA +
Preference number: 6 (lower is better)
Translates to: SASRMQPSSSLH*DSFGSLSTETL
Trigger: TAACGTCTCTGTGGATAAGGAACCGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 72 bp TCTATTTCAACTCGGCTTTCAAGGTTGAAAAGCTCCTaGTCTTCTGACACGATTTGCTTCTCAGAGGACCCT +
Preference number: 6 (lower is better)
Translates to: SISTRLSRLKSS*SSDTICFSEDP
Trigger: AGGGTCCTCTGAGAAGCAAATCGTGTCAGAAGACAAGGAGCTTTTCAACCTTGAAAGCCGAGTTGAAATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5
CDS CAA 72 bp TTTATAGACTTCTCTATTTCAACTCGGCTTTCAAGGTaGAAAAGCTCCTTGTCTTCTGACACGATTTGCTTC +
Preference number: 6 (lower is better)
Translates to: FIDFSISTRLSR*KSSLSSDTICF
Trigger: GAAGCAAATCGTGTCAGAAGACAAGGAGCTTTTCAACCTTGAAAGCCGAGTTGAAATAGAGAAGTCTATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099554.5