Pregenerated sensors for MIS12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040599Ensembl transcript IDs: ENSMUST00000048807.12, ENSMUST00000164220.8
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAGGCTTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATaGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCTGCGATT | + |
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Preference number: 1 (lower is better) Translates to: GGFTRCEPSLREKSK*TQALLLRSPLQPAI Trigger: AATCGCAGGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAAGCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR GCA 90 bp | GAGATTATTTATTGTATGTATAGAATCCAAAGTTACATGCCTTCCTaGTGTCTCAGGTGTTACAGGGTGAGATCATGCCAGAGCAGAAGG | + |
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Preference number: 1 (lower is better) Translates to: EIIYCMYRIQSYMPS*CLRCYRVRSCQSRR Trigger: CCTTCTGCTCTGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGGATTCTATACATACAATAAATAATCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR CCA 90 bp | TATTTTACCTGCCGACCCATCTCATCAGACTTACAAAAAGTAGACTaGAATGTGACAGGCGTATCCCATTTCCTAAATTGGCCATATCTG | + |
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Preference number: 1 (lower is better) Translates to: YFTCRPISSDLQKVD*NVTGVSHFLNWPYL Trigger: CAGATATGGCCAATTTAGGAAATGGGATACGCCTGTCACATTCCAGTCTACTTTTTGTAAGTCTGATGAGATGGGTCGGCAGGTAAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAGGGTGAGATCATGCCATGCCCTGCTGCCCTTTaGTTTCCTTCTCCTCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: PKLHAFLLSQVLQGEIMPCPAAL*FPSPPS Trigger: GGAAGGAGGAGAAGGAAATCAAAGGGCAGCAGGGCA...TGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR TCA 90 bp | GTAATTTTCCATCCAATGATACTTGCTTTGTCCCAACAAGTCCCATTCTGTCCCCACAAGCTCTGCTTCTaGGGTCTCCACTGCAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: VIFHPMILALSQQVPFCPHKLCF*GLHCSL Trigger: CAGGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTG...GGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR GCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGGTCTCCACTGCAGCCTaGGATTTAGAAGGTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: FTRCEPSLREKSKWTQALVSTAA*DLEGLL Trigger: CAGCAGACCTTCTAAATCGCAGGCTGCAGTGGAGAC...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR CAA 90 bp | TGCAATCCCAAAAGAACTGGAGGCTTTACCAGATGTGAGCCAAGTTaGAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: CNPKRTGGFTRCEPS*REKSKWTQALLLRS Trigger: AGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR-3UTR GCA 90 bp | AGAGTGTACATGCCACAGTGTACCTTAAGACAACTTTGTGGAGTCAATTCTTTCGTCTCCACTGCAGCCTaGGATTTAGAAGGTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: RVYMPQCTLRQLCGVNSFVSTAA*DLEGLL Trigger: CAGCAGACCTTCTAAATCGCAGGCTGCAGTGGAGAC...GAAAGAATTGACTCCACAAAGTTGTCTTAAGGTACACTGTGGCATGTACACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR GCA 90 bp | CCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAGGGTGAGATCATGCCACATACACAGAGGTTTTaGTTGTCTCTTAAGAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: PKLHAFLLSQVLQGEIMPHTQRF*LSLKRD Trigger: GTCTCTCTTAAGAGACAAGCAAAACCTCTGTGTATG...TGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR TCA 90 bp | AGAGTGTACATGCCACAGTGTACCTTAAGACAACTTTGTGGAGTCAATTCTTTCGGCTCTATTAGTCCCTaGTGTACCTCATGGTTATAC | + |
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Preference number: 2 (lower is better) Translates to: RVYMPQCTLRQLCGVNSFGSISP*CTSWLY Trigger: GTATAACCATGAGGTACATCAGGGACTAATAGAGCC...GAAAGAATTGACTCCACAAAGTTGTCTTAAGGTACACTGTGGCATGTACACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR TCA 90 bp | GTAATTTTCCATCCAATGATACTTGCTTTGTCCCAACAAGTCCCATTCTGTCCCTACCTAACAGCAAAATaGGTGCAATCCCAAAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: VIFHPMILALSQQVPFCPYLTAK*VQSQKN Trigger: GTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTA...GGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR-3UTR CCA 90 bp | CACATACACAGAGGTTTTGCTTGTCTCTTAAGAGAGACTGTGTGTGTACACACATTACAAAAAGTAGACTaGAATGTGACAGGCGTATCC | + |
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Preference number: 2 (lower is better) Translates to: HIHRGFACLLRETVCVHTLQKVD*NVTGVS Trigger: GGATACGCCTGTCACATTCCAGTCTACTTTTTGTAA...TGTGTGTACACACACAGTCTCTCTTAAGAGACAAGCAAAACCTCTGTGTATGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR GCA 72 bp | ATGTCATCCCATACCCTGATCCCCTCTACTGTGCCCTaGTGCCCTTTGATTTCCTTCTCCTCCTTCCCACTC | + |
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Preference number: 3 (lower is better) Translates to: MSSHTLIPSTVP*CPLISFSSFPL Trigger: GAGTGGGAAGGAGGAGAAGGAAATCAAAGGGCAGCAGGGCACAGTAGAGGGGATCAGGGTATGGGATGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR TCA 72 bp | GTTACATGCCTTCCTGCTGTCTCAGGTGTTACAGGGTaGGATCATGCCAGAGCAGAAGGACCTGAGTCCATC | + |
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Preference number: 3 (lower is better) Translates to: VTCLPAVSGVTG*DHARAEGPESI Trigger: GATGGACTCAGGTCCTTCTGCTCTGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR CCA 72 bp | ACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATaGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAG | + |
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Preference number: 3 (lower is better) Translates to: TRCEPSLREKSK*TQALLLRSPLQ Trigger: CTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR TCA 72 bp | TGTTACAGGGTGAGATCATGCCAGAGCAGAAGGACCTaGGTCCATCCTTTATTGGGAATCTATTCCCTAAGG | + |
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Preference number: 3 (lower is better) Translates to: CYRVRSCQSRRT*VHPLLGIYSLR Trigger: CCTTAGGGAATAGATTCCCAATAAAGGATGGACTCAGGTCCTTCTGCTCTGGCATGATCTCACCCTGTAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR TCA 72 bp | GTGCAATCCCAAAAGAACTGGAGGCTTTACCAGATGTaGGCCAAGTTTGAGAGAGAAAAGCAAATGGACACA | + |
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Preference number: 3 (lower is better) Translates to: VQSQKNWRLYQM*AKFEREKQMDT Trigger: TGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR CCA 72 bp | TGCCGACCCATCTCATCAGACTTACAAAAAGTAGACTaGAATGTGACAGGCGTATCCCATTTCCTAAATTGG | + |
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Preference number: 3 (lower is better) Translates to: CRPISSDLQKVD*NVTGVSHFLNW Trigger: CCAATTTAGGAAATGGGATACGCCTGTCACATTCCAGTCTACTTTTTGTAAGTCTGATGAGATGGGTCGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR GCA 72 bp | TATTGTATGTATAGAATCCAAAGTTACATGCCTTCCTaGTGTCTCAGGTGTTACAGGGTGAGATCATGCCAG | + |
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Preference number: 3 (lower is better) Translates to: YCMYRIQSYMPS*CLRCYRVRSCQ Trigger: CTGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGGATTCTATACATACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR GCA 72 bp | ACCGACCCTTTTAGTAATTTTCCATCCAATGATACTTaGTTTGTCCCAACAAGTCCCATTCTGTCCCTTAGT | + |
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Preference number: 3 (lower is better) Translates to: TDPFSNFPSNDT*FVPTSPILSLS Trigger: ACTAAGGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTACTAAAAGGGTCGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR GCA 72 bp | GTCCCAGTATCTAACTTAAGGGTCCTGAATAAAGTCTaGTTTACCAATCTAACAAGTGCCATCAATCACATT | + |
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Preference number: 3 (lower is better) Translates to: VPVSNLRVLNKV*FTNLTSAINHI Trigger: AATGTGATTGATGGCACTTGTTAGATTGGTAAAGCAGACTTTATTCAGGACCCTTAAGTTAGATACTGGGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR GCA 72 bp | TGCTTTGTCCCAACAAGTCCCATTCTGTCCCTTAGTTaGACATTCCCAAACATCTTTTTACTTCTTATATTC | + |
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Preference number: 3 (lower is better) Translates to: CFVPTSPILSLS*TFPNIFLLLIF Trigger: GAATATAAGAAGTAAAAAGATGTTTGGGAATGTGCAACTAAGGGACAGAATGGGACTTGTTGGGACAAAGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR CCA 72 bp | AGTGTACATGCCACAGTGTACCTTAAGACAACTTTGTaGAGTCAATTCTTTCCATCTTTAAGTAGGTTTTGG | + |
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Preference number: 3 (lower is better) Translates to: SVHATVYLKTTL*SQFFPSLSRFW Trigger: CCAAAACCTACTTAAAGATGGAAAGAATTGACTCCACAAAGTTGTCTTAAGGTACACTGTGGCATGTACACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | GAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCGAGTCTGGACAGGGGTaGTCTCACAGTTTGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: EREKQMDTSSASEVSTAAESGQG*SHSLEC Trigger: ACATTCCAAACTGTGAGATCACCCCTGTCCAGACTC...GGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CCA 90 bp | GAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCCAGCAGGCAAGTCTGTaGTGTGAAGCCAAAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: EREKQMDTSSASEVSTAAQQASL*CEAKEL Trigger: CAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTG...GGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | GAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCCAGGTGGTCTTGAAATaGTACGTAGATCCTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EREKQMDTSSASEVSTAAQVVLK*YVDPQQ Trigger: CTGCTGAGGATCTACGTAGCATTTCAAGACCACCTG...GGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR TCA 90 bp | CACATACACAGAGGTTTTGCTTGTCTCTTAAGAGAGACTGTGTGTGTACACACAGGCAAGTCTGTGGTGTaGAGCCAAAGAACTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: HIHRGFACLLRETVCVHTGKSVV*SQRTGP Trigger: AGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCC...TGTGTGTACACACACAGTCTCTCTTAAGAGACAAGCAAAACCTCTGTGTATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | GAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCTCTCCTGTAACTCTTTaGTTTCCTGTTGGAGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: EREKQMDTSSASEVSTAASPVTL*FPVGEA Trigger: AGCTTCTCCAACAGGAAATCAAAGAGTTACAGGAGA...GGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR TCA 90 bp | ATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTTTACCAGATGGCAAGTCTGTGGTGTaGAGCCAAAGAACTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: IPNSKMSAIPKELEALPDGKSVV*SQRTGP Trigger: AGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCC...ATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | GGGACATGCCCCTTTAATATATTGCACTATATGTCATCCCATACCCTGATCCCCCAGGTGGTCTTGAAATaGTACGTAGATCCTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GTCPFNILHYMSSHTLIPQVVLK*YVDPQQ Trigger: CTGCTGAGGATCTACGTAGCATTTCAAGACCACCTG...GGGGATCAGGGTATGGGATGACATATAGTGCAATATATTAAAGGGGCATGTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | GAGAGAGAAAAGCAAATGGACACAAGCTCTGCTTCTGAGGTCTCCACTGCAGCCAAGTTACTAGTTCCTTaGTATCTGCCGATGTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: EREKQMDTSSASEVSTAAKLLVP*YLPMFS Trigger: TGAAAACATCGGCAGATATCAAGGAACTAGTAACTT...GGCTGCAGTGGAGACCTCAGAAGCAGAGCTTGTGTCCATTTGCTTTTCTCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGGCTCTGGACCAGGGATaGCAAACTCTCCCTAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: FTRCEPSLREKSKWTQALALDQG*QTLPKV Trigger: AACTTTAGGGAGAGTTTGGCATCCCTGGTCCAGAGC...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAAGTAGGTTTTGGGGATCCTACTCAGGTCACCAGGCTTGTATTACAAGTCAGCAGGCAAGTCTGTaGTGTGAAGCCAAAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: SLSRFWGSYSGHQACITSQQASL*CEAKEL Trigger: CAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTG...ACTTGTAATACAAGCCTGGTGACCTGAGTAGGATCCCCAAAACCTACTTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | ATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTTTACCAGATGAGTCTGGACAGGGGTaGTCTCACAGTTTGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: IPNSKMSAIPKELEALPDESGQG*SHSLEC Trigger: ACATTCCAAACTGTGAGATCACCCCTGTCCAGACTC...ATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | AGAGTGTACATGCCACAGTGTACCTTAAGACAACTTTGTGGAGTCAATTCTTTCGCTCTGGACCAGGGATaGCAAACTCTCCCTAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: RVYMPQCTLRQLCGVNSFALDQG*QTLPKV Trigger: AACTTTAGGGAGAGTTTGGCATCCCTGGTCCAGAGC...GAAAGAATTGACTCCACAAAGTTGTCTTAAGGTACACTGTGGCATGTACACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR GCA 90 bp | AGAGTGTACATGCCACAGTGTACCTTAAGACAACTTTGTGGAGTCAATTCTTTCACCTGTTCAACAGCCTaGATCACTTCAAACAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RVYMPQCTLRQLCGVNSFTCSTA*ITSNRW Trigger: CCACCTGTTTGAAGTGATGCAGGCTGTTGAACAGGT...GAAAGAATTGACTCCACAAAGTTGTCTTAAGGTACACTGTGGCATGTACACTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR GCA 90 bp | ATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTTTACCAGATACCTGTTCAACAGCCTaGATCACTTCAAACAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: IPNSKMSAIPKELEALPDTCSTA*ITSNRW Trigger: CCACCTGTTTGAAGTGATGCAGGCTGTTGAACAGGT...ATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CCA 90 bp | ATTGTATGTATAGAATCCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAAGTTTTCTGCAGCTCTaGACCAGGGATGCCAAACTC | + |
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Preference number: 4 (lower is better) Translates to: IVCIESKVTCLPAVSGVTSFLQL*TRDAKL Trigger: GAGTTTGGCATCCCTGGTCCAGAGCTGCAGAAAACT...TGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGGATTCTATACATACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | ATTGTATGTATAGAATCCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAAAAGGATTCGTCTCCTaGCACTTGTCTTCAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: IVCIESKVTCLPAVSGVTKGFVS*HLSSGS Trigger: GCTTCCTGAAGACAAGTGTCAGGAGACGAATCCTTT...TGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGGATTCTATACATACAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGTCTCCTGTAACTCTTTaGTTTCCTGTTGGAGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: FTRCEPSLREKSKWTQALSPVTL*FPVGEA Trigger: AGCTTCTCCAACAGGAAATCAAAGAGTTACAGGAGA...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGTCAGCTGCTCCATTTTaGCAAAAAGGTTATCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: FTRCEPSLREKSKWTQALSAAPF*QKGYRS Trigger: GCTTCGATAACCTTTTTGGCAAAATGGAGCAGCTGA...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | GGGACATGCCCCTTTAATATATTGCACTATATGTCATCCCATACCCTGATCCCCATACACAAAATCGACTaGAAAATCAGCTGCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: GTCPFNILHYMSSHTLIPIHKID*KISCSI Trigger: AATGGAGCAGCTGATTTTGCAGTCGATTTTGTGTAT...GGGGATCAGGGTATGGGATGACATATAGTGCAATATATTAAAGGGGCATGTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR GCA 90 bp | ATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTTTACCAGATTCAGCTGCTCCATTTTaGCAAAAAGGTTATCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: IPNSKMSAIPKELEALPDSAAPF*QKGYRS Trigger: GCTTCGATAACCTTTTTGGCAAAATGGAGCAGCTGA...ATCTGGTAAAGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | GTAATTTTCCATCCAATGATACTTGCTTTGTCCCAACAAGTCCCATTCTGTCCCGCCTTAACAGTTTTCTaGTCCTCTAATTCTGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: VIFHPMILALSQQVPFCPALTVF*SSNSAR Trigger: TCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGC...GGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR CCA 90 bp | TCTTTAAGTAGGTTTTGGGGATCCTACTCAGGTCACCAGGCTTGTATTACAAGTTCTTTGATTTCCTGTTaGAGAAGCTCGAGTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SLSRFWGSYSGHQACITSSLISC*RSSSFS Trigger: AGAGAAACTCGAGCTTCTCCAACAGGAAATCAAAGA...ACTTGTAATACAAGCCTGGTGACCTGAGTAGGATCCCCAAAACCTACTTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR TCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGAAGTTACTAGTTCCTTaGTATCTGCCGATGTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FTRCEPSLREKSKWTQALKLLVP*YLPMFS Trigger: TGAAAACATCGGCAGATATCAAGGAACTAGTAACTT...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGGTGTTTCCAGTCTCCTaGTTTCTTTTTCTACATTGT | + |
|
Preference number: 4 (lower is better) Translates to: FTRCEPSLREKSKWTQALVFPVS*FLFLHC Trigger: ACAATGTAGAAAAAGAAAGCAGGAGACTGGAAACAC...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| 3UTR CAA 72 bp | TCTTACATTATCAATGGGACATGCCCCTTTAATATATaGCACTATATGTCATCCCATACCCTGATCCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SYIINGTCPFNI*HYMSSHTLIPS Trigger: AGAGGGGATCAGGGTATGGGATGACATATAGTGCAATATATTAAAGGGGCATGTCCCATTGATAATGTAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| 3UTR CAA 72 bp | ACCCTTTTAGTAATTTTCCATCCAATGATACTTGCTTaGTCCCAACAAGTCCCATTCTGTCCCTTAGTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: TLLVIFHPMILA*SQQVPFCPLVA Trigger: TGCAACTAAGGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTACTAAAAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR GCA 90 bp | ATCATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGAAAGAAACTTCTCTGTaGATTTCCGAGTCTGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: IILNIPNSKMSAIPKELEKETSL*ISESGQ Trigger: CTGTCCAGACTCGGAAATGCACAGAGAAGTTTCTTT...CTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTATGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CCA 90 bp | ATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTTCTTTGATTTCCTGTTaGAGAAGCTCGAGTTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ILNIPNSKMSAIPKELEASLISC*RSSSFS Trigger: AGAGAAACTCGAGCTTCTCCAACAGGAAATCAAAGA...AGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | ATCATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCCTTAACAGTTTTCTaGTCCTCTAATTCTGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: IILNIPNSKMSAIPKELEALTVF*SSNSAR Trigger: TCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGC...CTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTATGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR GCA 90 bp | ATTGTATGTATAGAATCCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAGTGTTTCCAGTCTCCTaGTTTCTTTTTCTACATTGT | + |
|
Preference number: 4 (lower is better) Translates to: IVCIESKVTCLPAVSGVTVFPVS*FLFLHC Trigger: ACAATGTAGAAAAAGAAAGCAGGAGACTGGAAACAC...TGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGGATTCTATACATACAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR GCA 90 bp | ATCATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGATACACAAAATCGACTaGAAAATCAGCTGCTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: IILNIPNSKMSAIPKELEIHKID*KISCSI Trigger: AATGGAGCAGCTGATTTTGCAGTCGATTTTGTGTAT...CTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CCA 90 bp | CAGGTGGTCTTGAAATGCTACGTAGATCCTCAGCAGGCAAGTCTGTaGTGTGAAGCCAAAGAACTGGGCCTCATAGGCCATCGGATCCAC | + |
|
Preference number: 5 (lower is better) Translates to: QVVLKCYVDPQQASL*CEAKELGLIGHRIH Trigger: GTGGATCCGATGGCCTATGAGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAAGACCACCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS TCA 90 bp | GGTCTTGAAATGCTACGTAGATCCTCAGCAGGCAAGTCTGTGGTGTaGAGCCAAAGAACTGGGCCTCATAGGCCATCGGATCCACAGACA | + |
|
Preference number: 5 (lower is better) Translates to: GLEMLRRSSAGKSVV*SQRTGPHRPSDPQT Trigger: TGTCTGTGGATCCGATGGCCTATGAGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAAGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 90 bp | AACCTGTTCAACAGCCTGCATCACTTCAAACAGGTGGTCTTGAAATaGTACGTAGATCCTCAGCAGGCAAGTCTGTGGTGTGAAGCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: NLFNSLHHFKQVVLK*YVDPQQASLWCEAK Trigger: TTTGGCTTCACACCACAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAAGACCACCTGTTTGAAGTGATGCAGGCTGTTGAACAGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CAA 90 bp | CCAAAGTTACATGCCTTCCTGCTGTCTCAGGTGTTACAGGGTGAGATCATGCCACTCTTTGATTTCCTGTaGGAGAAGCTCGAGTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PKLHAFLLSQVLQGEIMPLFDFL*EKLEFL Trigger: GAGAAACTCGAGCTTCTCCAACAGGAAATCAAAGAG...TGGCATGATCTCACCCTGTAACACCTGAGACAGCAGGAAGGCATGTAACTTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS CCA 90 bp | CGTCCTTTCATGAAGCAAAGAAACTTCTCTGTGCATTTCCGAGTCTaGACAGGGGTGATCTCACAGTTTGGAATGTCCTCCAGCTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: RPFMKQRNFSVHFRV*TGVISQFGMSSSFF Trigger: AAAGAAGCTGGAGGACATTCCAAACTGTGAGATCACCCCTGTCCAGACTCGGAAATGCACAGAGAAGTTTCTTTGCTTCATGAAAGGACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 90 bp | TCAAAGAAAGTCAAGGTCTCTCTGAGTTTGGCCTTAACAGTTTTCTaGTCCTCTAATTCTGCAAGAAGGGCCTGCTCAGTGCACAACTCA | + |
|
Preference number: 5 (lower is better) Translates to: SKKVKVSLSLALTVF*SSNSARRACSVHNS Trigger: TGAGTTGTGCACTGAGCAGGCCCTTCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGCCAAACTCAGAGAGACCTTGACTTTCTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS TCA 90 bp | CTCTGGACCAGGGATGCCAAACTCTCCCTAAAGTTACTAGTTCCTTaGTATCTGCCGATGTTTTCAAGCTCATCAAAGAAAGTCAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LWTRDAKLSLKLLVP*YLPMFSSSSKKVKV Trigger: GACCTTGACTTTCTTTGATGAGCTTGAAAACATCGGCAGATATCAAGGAACTAGTAACTTTAGGGAGAGTTTGGCATCCCTGGTCCAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 90 bp | TTGGCCTTAACAGTTTTCTGCTCCTCTAATTCTGCAAGAAGGGCCTaGTCAGTGCACAACTCAACCTTGTATTTCTCCTGTAACTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LALTVFCSSNSARRA*SVHNSTLYFSCNSL Trigger: CAAAGAGTTACAGGAGAAATACAAGGTTGAGTTGTGCACTGAGCAGGCCCTTCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 90 bp | ATTGTCTCTAATGCTCTGAAGTTTTCTGCAGCTCTGGACCAGGGATaGCAAACTCTCCCTAAAGTTACTAGTTCCTTGATATCTGCCGAT | + |
|
Preference number: 5 (lower is better) Translates to: IVSNALKFSAALDQG*QTLPKVTSSLISAD Trigger: ATCGGCAGATATCAAGGAACTAGTAACTTTAGGGAGAGTTTGGCATCCCTGGTCCAGAGCTGCAGAAAACTTCAGAGCATTAGAGACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CAA 90 bp | TTTACCAGATGTGAGCCAAGTTTGAGAGAGAAAAGCAAATGGACACAAGCTCTGCTCTTTGATTTCCTGTaGGAGAAGCTCGAGTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: FTRCEPSLREKSKWTQALLFDFL*EKLEFL Trigger: GAGAAACTCGAGCTTCTCCAACAGGAAATCAAAGAG...CAGAGCTTGTGTCCATTTGCTTTTCTCTCTCAAACTTGGCTCACATCTGGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CAA 90 bp | GTCCCAACAAGTCCCATTCTGTCCCTTAGTTGCACATTCCCAAACATCTTTTTAATCAGCTGCTCCATTTaGCCAAAAAGGTTATCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VPTSPILSLSCTFPNIFLISCSI*PKRLSK Trigger: CTTCGATAACCTTTTTGGCAAAATGGAGCAGCTGAT...TAAAAAGATGTTTGGGAATGTGCAACTAAGGGACAGAATGGGACTTGTTGGGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR CAA 90 bp | GTAATTTTCCATCCAATGATACTTGCTTTGTCCCAACAAGTCCCATTCTGTCCCTTCTCCTGTAACTCTTaGATTTCCTGTTGGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: VIFHPMILALSQQVPFCPFSCNS*ISCWRS Trigger: GCTTCTCCAACAGGAAATCAAAGAGTTACAGGAGAA...GGGACAGAATGGGACTTGTTGGGACAAAGCAAGTATCATTGGATGGAAAATTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048807.12 |
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| CDS-3UTR CAA 90 bp | ATCATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGATCAGCTGCTCCATTTaGCCAAAAAGGTTATCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: IILNIPNSKMSAIPKELEISCSI*PKRLSK Trigger: CTTCGATAACCTTTTTGGCAAAATGGAGCAGCTGAT...CTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTATGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CAA 90 bp | ATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGGCTAAAGTTACTAGTTCCTaGATATCTGCCGATGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: ILNIPNSKMSAIPKELEAKVTSS*ISADVF Trigger: GAAAACATCGGCAGATATCAAGGAACTAGTAACTTT...AGCCTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS-3UTR CAA 90 bp | ATCATACTAAACATACCTAACAGCAAAATGAGTGCAATCCCAAAAGAACTGGAGAAAGTTACTAGTTCCTaGATATCTGCCGATGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: IILNIPNSKMSAIPKELEKVTSS*ISADVF Trigger: GAAAACATCGGCAGATATCAAGGAACTAGTAACTTT...CTCCAGTTCTTTTGGGATTGCACTCATTTTGCTGTTAGGTATGTTTAGTATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS TCA 72 bp | ATGCTACGTAGATCCTCAGCAGGCAAGTCTGTGGTGTaGAGCCAAAGAACTGGGCCTCATAGGCCATCGGAT | + |
|
Preference number: 6 (lower is better) Translates to: MLRRSSAGKSVV*SQRTGPHRPSD Trigger: ATCCGATGGCCTATGAGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTGAGGATCTACGTAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CCA 72 bp | TTGAAATGCTACGTAGATCCTCAGCAGGCAAGTCTGTaGTGTGAAGCCAAAGAACTGGGCCTCATAGGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: LKCYVDPQQASL*CEAKELGLIGH Trigger: ATGGCCTATGAGGCCCAGTTCTTTGGCTTCACACCACAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 72 bp | AACAGCCTGCATCACTTCAAACAGGTGGTCTTGAAATaGTACGTAGATCCTCAGCAGGCAAGTCTGTGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: NSLHHFKQVVLK*YVDPQQASLWC Trigger: ACACCACAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAAGACCACCTGTTTGAAGTGATGCAGGCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS GCA 72 bp | GTCAAGGTCTCTCTGAGTTTGGCCTTAACAGTTTTCTaGTCCTCTAATTCTGCAAGAAGGGCCTGCTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VKVSLSLALTVF*SSNSARRACSV Trigger: CACTGAGCAGGCCCTTCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGCCAAACTCAGAGAGACCTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 72 bp | CTGTTCAACAGCCTGCATCACTTCAAACAGGTGGTCTaGAAATGCTACGTAGATCCTCAGCAGGCAAGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LFNSLHHFKQVV*KCYVDPQQASL Trigger: CAGACTTGCCTGCTGAGGATCTACGTAGCATTTCAAGACCACCTGTTTGAAGTGATGCAGGCTGTTGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS TCA 72 bp | GAAACTTCTCTGTGCATTTCCGAGTCTGGACAGGGGTaGTCTCACAGTTTGGAATGTCCTCCAGCTTCTTTA | + |
|
Preference number: 6 (lower is better) Translates to: ETSLCISESGQG*SHSLECPPASL Trigger: TAAAGAAGCTGGAGGACATTCCAAACTGTGAGATCACCCCTGTCCAGACTCGGAAATGCACAGAGAAGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CCA 72 bp | ATGAAGCAAAGAAACTTCTCTGTGCATTTCCGAGTCTaGACAGGGGTGATCTCACAGTTTGGAATGTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: MKQRNFSVHFRV*TGVISQFGMSS Trigger: GGAGGACATTCCAAACTGTGAGATCACCCCTGTCCAGACTCGGAAATGCACAGAGAAGTTTCTTTGCTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 90 bp | TCCTCTAATTCTGCAAGAAGGGCCTGCTCAGTGCACAACTCAACCTaGTATTTCTCCTGTAACTCTTTGATTTCCTGTTGGAGAAGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SSNSARRACSVHNST*YFSCNSLISCWRSS Trigger: CGAGCTTCTCCAACAGGAAATCAAAGAGTTACAGGAGAAATACAAGGTTGAGTTGTGCACTGAGCAGGCCCTTCTTGCAGAATTAGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 72 bp | TCTGCAAGAAGGGCCTGCTCAGTGCACAACTCAACCTaGTATTTCTCCTGTAACTCTTTGATTTCCTGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: SARRACSVHNST*YFSCNSLISCW Trigger: CCAACAGGAAATCAAAGAGTTACAGGAGAAATACAAGGTTGAGTTGTGCACTGAGCAGGCCCTTCTTGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 90 bp | GCCTGCTCAGTGCACAACTCAACCTTGTATTTCTCCTGTAACTCTTaGATTTCCTGTTGGAGAAGCTCGAGTTTCTCTTCACTGAAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: ACSVHNSTLYFSCNS*ISCWRSSSFSSLKG Trigger: TCCTTTCAGTGAAGAGAAACTCGAGCTTCTCCAACAGGAAATCAAAGAGTTACAGGAGAAATACAAGGTTGAGTTGTGCACTGAGCAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 90 bp | CCGATGTTTTCAAGCTCATCAAAGAAAGTCAAGGTCTCTCTGAGTTaGGCCTTAACAGTTTTCTGCTCCTCTAATTCTGCAAGAAGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PMFSSSSKKVKVSLS*ALTVFCSSNSARRA Trigger: GGCCCTTCTTGCAGAATTAGAGGAGCAGAAAACTGTTAAGGCCAAACTCAGAGAGACCTTGACTTTCTTTGATGAGCTTGAAAACATCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 90 bp | GCTCTGGACCAGGGATGCCAAACTCTCCCTAAAGTTACTAGTTCCTaGATATCTGCCGATGTTTTCAAGCTCATCAAAGAAAGTCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: ALDQGCQTLPKVTSS*ISADVFKLIKESQG Trigger: ACCTTGACTTTCTTTGATGAGCTTGAAAACATCGGCAGATATCAAGGAACTAGTAACTTTAGGGAGAGTTTGGCATCCCTGGTCCAGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 72 bp | TCAAGCTCATCAAAGAAAGTCAAGGTCTCTCTGAGTTaGGCCTTAACAGTTTTCTGCTCCTCTAATTCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: SSSSKKVKVSLS*ALTVFCSSNSA Trigger: TGCAGAATTAGAGGAGCAGAAAACTGTTAAGGCCAAACTCAGAGAGACCTTGACTTTCTTTGATGAGCTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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| CDS CAA 72 bp | CAGGGATGCCAAACTCTCCCTAAAGTTACTAGTTCCTaGATATCTGCCGATGTTTTCAAGCTCATCAAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: QGCQTLPKVTSS*ISADVFKLIKE Trigger: TTCTTTGATGAGCTTGAAAACATCGGCAGATATCAAGGAACTAGTAACTTTAGGGAGAGTTTGGCATCCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048807.12 ENSMUST00000164220.8 |
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