RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MIPEP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021993

Ensembl transcript IDs: ENSMUST00000063562.9, ENSMUST00000224635.2, ENSMUST00000225043.2, ENSMUST00000225506.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCGCTCTTCTGCATGAATCCAGAGTCGGATGTGCACATGGCGGGTaGGATGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCA +
Preference number: 1 (lower is better)
Translates to: TALLHESRVGCAHGG*DGSVVHEGAQHSRS
Trigger: TGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCATCTCACCCGCCATGTGCACATCCGACTCTGGATTCATGCAGAAGAGCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR TCA 90 bp GTTAACAAAGCAGGATTGGGGTGGCAAGGACTGTGTTCAGTTGGTTaGGTGCTAGCCTGGCATGCAGGAAGCCCTGGGTCTGATCCCAGC +
Preference number: 1 (lower is better)
Translates to: VNKAGLGWQGLCSVG*VLAWHAGSPGSDPS
Trigger: GCTGGGATCAGACCCAGGGCTTCCTGCATGCCAGGCTAGCACTCAACCAACTGAACACAGTCCTTGCCACCCCAATCCTGCTTTGTTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR GCA 90 bp TGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTaGATGAATCCAGAGTCGGATGTGCACATGGCGGGTGAGATGGGT +
Preference number: 1 (lower is better)
Translates to: CGMDSSGNSVGQPLF*MNPESDVHMAGEMG
Trigger: ACCCATCTCACCCGCCATGTGCACATCCGACTCTGGATTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CCA 90 bp ATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTaGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGGT +
Preference number: 1 (lower is better)
Translates to: IKRSTEWLQSGHSPW*HREGWYSIIRNFCG
Trigger: ACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CCA 90 bp TGGCTCAAGCATGCAACCCTAGCATCTGAGAGTTCTAGATCAGCTTaGGCTACAGAGCAAGATCATGTCCCAAAGAGCAAAACCAAAACC +
Preference number: 1 (lower is better)
Translates to: WLKHATLASESSRSA*ATEQDHVPKSKTKT
Trigger: GGTTTTGGTTTTGCTCTTTGGGACATGATCTTGCTCTGTAGCCCAAGCTGATCTAGAACTCTCAGATGCTAGGGTTGCATGCTTGAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 90 bp GGAAGCAGATATTCTTGGCTTCACAGAAAGCTCAATGCTACCCTGTaGTACATGAGTCCCCATTGCTCACAAACAGAAGACATCAAACCC +
Preference number: 1 (lower is better)
Translates to: GSRYSWLHRKLNATL*YMSPHCSQTEDIKP
Trigger: GGGTTTGATGTCTTCTGTTTGTGAGCAATGGGGACTCATGTATCACAGGGTAGCATTGAGCTTTCTGTGAAGCCAAGAATATCTGCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 90 bp GGTCACCAGTTTCTCATCACGAAACAGATTCTTAAAGGCACTGTGTaGGTGATGGGAGAAGCATTTCTTACTCTGACAAATGCTTGGAGG +
Preference number: 1 (lower is better)
Translates to: GHQFLITKQILKGTV*VMGEAFLTLTNAWR
Trigger: CCTCCAAGCATTTGTCAGAGTAAGAAATGCTTCTCCCATCACCCACACAGTGCCTTTAAGAATCTGTTTCGTGATGAGAAACTGGTGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 90 bp CAAAACCTAACAAGTCCGGAGCTTACAGATTGCTTCTCATTCTTCTaGGGTCACCAGTTTCTCATCACGAAACAGATTCTTAAAGGCACT +
Preference number: 1 (lower is better)
Translates to: QNLTSPELTDCFSFF*GHQFLITKQILKGT
Trigger: AGTGCCTTTAAGAATCTGTTTCGTGATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGACTTGTTAGGTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 90 bp GATATTCTTGGCTTCACAGAAAGCTCAATGCTACCCTGTGATACATaGGTCCCCATTGCTCACAAACAGAAGACATCAAACCCAGTTAAT +
Preference number: 1 (lower is better)
Translates to: DILGFTESSMLPCDT*VPIAHKQKTSNPVN
Trigger: ATTAACTGGGTTTGATGTCTTCTGTTTGTGAGCAATGGGGACTCATGTATCACAGGGTAGCATTGAGCTTTCTGTGAAGCCAAGAATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 90 bp AATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGTCTTaGCCCTCGTATGTCTCACTAACATTATCTTCACAGTCAAGACAG +
Preference number: 1 (lower is better)
Translates to: NDKQGLNLFPYVLMS*PSYVSLTLSSQSRQ
Trigger: CTGTCTTGACTGTGAAGATAATGTTAGTGAGACATACGAGGGTCAAGACATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp CCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGAGAATGGCTGCAGTCTaGACACAGCCCCTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: PRLGDPPLCCGWSHSRRQRMAAV*TQPLVA
Trigger: TGCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCT...CTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTTCTGGACACAGCCCCTaGTGGCACAGGGAAGGGTGG +
Preference number: 2 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISSGHSP*WHREGW
Trigger: CCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGA...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR GCA 90 bp CCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGCGTTCAAATCCTCCCTaGTCTGCACCCGTCTGTGTA +
Preference number: 2 (lower is better)
Translates to: PRLGDPPLCCGWSHSRRQRSNPP*SAPVCV
Trigger: TACACAGACGGGTGCAGAGCAGGGAGGATTTGAACG...CTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR GCA 90 bp GTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCCAAGACAGCAAAGCCTaGGTTCAAATCCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: VPDWETLPSVVAGHIAGGQDSKA*VQILPA
Trigger: AGCAGGGAGGATTTGAACGCAGGCTTTGCTGTCTTG...GCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp CCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCGCCAATGGAAAGCAGTaGCTTCTGGGAAATGACAAA +
Preference number: 2 (lower is better)
Translates to: PPLCCGWSHSRRQEEGATANGKQ*LLGNDK
Trigger: TTTGTCATTTCCCAGAAGCCACTGCTTTCCATTGGC...GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp TGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCAGAGTGTGTCCCAGACTaGGAGACCCTCCCCTCTGTT +
Preference number: 2 (lower is better)
Translates to: WFVGWTVLETQWANRSSAECVPD*ETLPSV
Trigger: AACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTC...TGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR TCA 90 bp CCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCTATGTACTCATGTCTTaGCCCTCGTATGTCTCACTA +
Preference number: 2 (lower is better)
Translates to: PPLCCGWSHSRRQEEGATYVLMS*PSYVSL
Trigger: TAGTGAGACATACGAGGGTCAAGACATGAGTACATA...GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR TCA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTGTGGCTTCTGGGAAATaGCAAACAAGGCTTGAACCT +
Preference number: 2 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISVASGK*QTRLEP
Trigger: AGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCAC...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp CCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTAGAATGGCTGCAGTCTaGACACAGCCCCTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: PIYGLWDGQFWKLSGPTARMAAV*TQPLVA
Trigger: TGCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCT...AGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp GTGGGCCAACCGCTCTTCTGCATGAATCCAGAGTCGGATGTGCACATGGCGGGTGAAAGCAGTGGCTTCTaGGAAATGACAAACAAGGCT +
Preference number: 2 (lower is better)
Translates to: VGQPLFCMNPESDVHMAGESSGF*EMTNKA
Trigger: AGCCTTGTTTGTCATTTCCCAGAAGCCACTGCTTTC...ACCCGCCATGTGCACATCCGACTCTGGATTCATGCAGAAGAGCGGTTGGCCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAACTCCAGAGCTGCCAATaGAAAGCAGTGGCTTCTGGG +
Preference number: 2 (lower is better)
Translates to: LWDGQFWKLSGPTALLHELQSCQ*KAVASG
Trigger: CCCAGAAGCCACTGCTTTCCATTGGCAGCTCTGGAG...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR GCA 90 bp GTGGGCCAACCGCTCTTCTGCATGAATCCAGAGTCGGATGTGCACATGGCGGGTAACCACCTAAGTCCATaGAATGATTCCTTTCCTCAT +
Preference number: 2 (lower is better)
Translates to: VGQPLFCMNPESDVHMAGNHLSP*NDSFPH
Trigger: ATGAGGAAAGGAATCATTGCATGGACTTAGGTGGTT...ACCCGCCATGTGCACATCCGACTCTGGATTCATGCAGAAGAGCGGTTGGCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CCA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGTCTGGACACAGCCCCTaGTGGCACAGGGAAGGGTGG +
Preference number: 2 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMSGHSP*WHREGW
Trigger: CCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGA...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR GCA 90 bp GAGAAGGTCTGCGTCACTAGCACTTGGGAGGTGGAAGCAGATATTCTTGGCTTCTCTTACTCTGACAAATaGTTGGAGGTGTTCCCTGTC +
Preference number: 2 (lower is better)
Translates to: EKVCVTSTWEVEADILGFSYSDK*LEVFPV
Trigger: GACAGGGAACACCTCCAAGCATTTGTCAGAGTAAGA...GAAGCCAAGAATATCTGCTTCCACCTCCCAAGTGCTAGTGACGCAGACCTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CCA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAAGCCAATGGAAAGCAGTaGCTTCTGGGAAATGACAAA +
Preference number: 2 (lower is better)
Translates to: LWDGQFWKLSGPTALLHEANGKQ*LLGNDK
Trigger: TTTGTCATTTCCCAGAAGCCACTGCTTTCCATTGGC...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR TCA 90 bp TGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCAGATACCACTTTGGAGTaGGAAGTTGTAATTCTTGAC +
Preference number: 2 (lower is better)
Translates to: WFVGWTVLETQWANRSSADTTLE*EVVILD
Trigger: GTCAAGAATTACAACTTCTCACTCCAAAGTGGTATC...TGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR TCA 90 bp TCCGGAGCTTACAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCATCACAAGCATTTCTTACTCTaGCAAATGCTTGGAGGTGTT +
Preference number: 2 (lower is better)
Translates to: SGAYRLLLILLGSPVSHHKHFLL*QMLGGV
Trigger: AACACCTCCAAGCATTTGTCAGAGTAAGAAATGCTT...GTGATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CCA 90 bp TCTAGATCAGCTTGGGCTACAGAGCAAGATCATGTCCCAAAGAGCAAAACCAAAACTCTGACAAATGCTTaGAGGTGTTCCCTGTCATCA +
Preference number: 2 (lower is better)
Translates to: SRSAWATEQDHVPKSKTKTLTNA*RCSLSS
Trigger: TGATGACAGGGAACACCTCCAAGCATTTGTCAGAGT...TTTGGTTTTGCTCTTTGGGACATGATCTTGCTCTGTAGCCCAAGCTGATCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CCA 90 bp AGCACAAGCTCCACACTGAGACCTTCTATCAAGAATAAAAAGCCAGGTGTGGTGAGTTCTAGATCAGCTTaGGCTACAGAGCAAGATCAT +
Preference number: 2 (lower is better)
Translates to: STSSTLRPSIKNKKPGVVSSRSA*ATEQDH
Trigger: ATGATCTTGCTCTGTAGCCCAAGCTGATCTAGAACT...CACCACACCTGGCTTTTTATTCTTGATAGAAGGTCTCAGTGTGGAGCTTGTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CCA 90 bp ATTCTGTACAATGCGAGAGCTATGCACAGCAATGTCACCTCAAAGGTTAACAAAAGGACTGTGTTCAGTTaGTTGAGTGCTAGCCTGGCA +
Preference number: 2 (lower is better)
Translates to: ILYNARAMHSNVTSKVNKRTVFS*LSASLA
Trigger: TGCCAGGCTAGCACTCAACCAACTGAACACAGTCCT...TTTGTTAACCTTTGAGGTGACATTGCTGTGCATAGCTCTCGCATTGTACAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CCA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGAGTCTAAAACACCCTaGAAAGACTGTTTATATCAG +
Preference number: 2 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRAESKTP*KDCLYQ
Trigger: CTGATATAAACAGTCTTTCCAGGGTGTTTTAGACTC...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CCA 72 bp TGTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTaGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACC +
Preference number: 3 (lower is better)
Translates to: CPRLGDPPLCCG*SHSRRQEEGAT
Trigger: GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR TCA 72 bp GCAGGATTGGGGTGGCAAGGACTGTGTTCAGTTGGTTaGGTGCTAGCCTGGCATGCAGGAAGCCCTGGGTCT +
Preference number: 3 (lower is better)
Translates to: AGLGWQGLCSVG*VLAWHAGSPGS
Trigger: AGACCCAGGGCTTCCTGCATGCCAGGCTAGCACTCAACCAACTGAACACAGTCCTTGCCACCCCAATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 72 bp GAAGCTGGAGCGAGCTTTCCTAGCTGGAGGGTCTGGTaGCAAGGTTCTTATCCACGGGAGCCATGCTGCTGC +
Preference number: 3 (lower is better)
Translates to: EAGASFPSWRVW*QGSYPREPCCC
Trigger: GCAGCAGCATGGCTCCCGTGGATAAGAACCTTGTCACCAGACCCTCCAGCTAGGAAAGCTCGCTCCAGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225506.2
3UTR CCA 72 bp CTCCTAGAGTATGAGGACGCTGAGTGTGTCCCAGACTaGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATA +
Preference number: 3 (lower is better)
Translates to: LLEYEDAECVPD*ETLPSVVAGHI
Trigger: TATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTCAGCGTCCTCATACTCTAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR TCA 72 bp GTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATaGATCCAGAGTCGGATGTGCACATGGCGGGTGAGA +
Preference number: 3 (lower is better)
Translates to: VLETQWANRSSA*IQSRMCTWRVR
Trigger: TCTCACCCGCCATGTGCACATCCGACTCTGGATTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR GCA 72 bp CAGTCAAGACAGCAAAGCCTGCGTTCAAATCCTCCCTaGTCTGCACCCGTCTGTGTAGAGTCTAAAACACCC +
Preference number: 3 (lower is better)
Translates to: QSRQQSLRSNPP*SAPVCVESKTP
Trigger: GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAGGCTTTGCTGTCTTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CCA 72 bp CAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTaGTACTCTATAATTAGAAACTTCTGTGGTTCACAG +
Preference number: 3 (lower is better)
Translates to: QSGHSPWWHREG*YSIIRNFCGSQ
Trigger: CTGTGAACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR-3UTR CAA 90 bp GAGAAGGTCTGCGTCACTAGCACTTGGGAGGTGGAAGCAGATATTCTTGGCTTCTACTCTGACAAATGCTaGGAGGTGTTCCCTGTCATC +
Preference number: 3 (lower is better)
Translates to: EKVCVTSTWEVEADILGFYSDKC*EVFPVI
Trigger: GATGACAGGGAACACCTCCAAGCATTTGTCAGAGTA...GAAGCCAAGAATATCTGCTTCCACCTCCCAAGTGCTAGTGACGCAGACCTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 72 bp GCAAACCTGAGTCTGAGGCCAGCACAAGCTCCACACTaGGACCTTCTATCAAGAATAAAAAGCCAGGTGTGG +
Preference number: 3 (lower is better)
Translates to: ANLSLRPAQAPH*DLLSRIKSQVW
Trigger: CCACACCTGGCTTTTTATTCTTGATAGAAGGTCTCAGTGTGGAGCTTGTGCTGGCCTCAGACTCAGGTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR GCA 72 bp CCAGCACCTCTTAAAGCAGACGTAATGGAGAAGGTCTaGGTCACTAGCACTTGGGAGGTGGAAGCAGATATT +
Preference number: 3 (lower is better)
Translates to: PAPLKADVMEKV*VTSTWEVEADI
Trigger: AATATCTGCTTCCACCTCCCAAGTGCTAGTGACGCAGACCTTCTCCATTACGTCTGCTTTAAGAGGTGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp ACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGTaGCTTCTGGGAAATGACAAACAAGGCTTGAACCTG +
Preference number: 3 (lower is better)
Translates to: TCSNSRAANGKQ*LLGNDKQGLNL
Trigger: CAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCACTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CCA 72 bp ACAGCAATGTCACCTCAAAGGTTAACAAAGCAGGATTaGGGTGGCAAGGACTGTGTTCAGTTGGTTGAGTGC +
Preference number: 3 (lower is better)
Translates to: TAMSPQRLTKQD*GGKDCVQLVEC
Trigger: GCACTCAACCAACTGAACACAGTCCTTGCCACCCCAATCCTGCTTTGTTAACCTTTGAGGTGACATTGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp AGGGATGACTATCTGGAGGTACCAATATATGGTTTGTaGGATGGACAGTTCTGGAAACTCAGTGGGCCAACC +
Preference number: 3 (lower is better)
Translates to: RDDYLEVPIYGL*DGQFWKLSGPT
Trigger: GGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGATAGTCATCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR GCA 72 bp GTGGGTGATGGGAGAAGCATTTCTTACTCTGACAAATaGTTGGAGGTGTTCCCTGTCATCACGGAGAATAGA +
Preference number: 3 (lower is better)
Translates to: VGDGRSISYSDK*LEVFPVITENR
Trigger: TCTATTCTCCGTGATGACAGGGAACACCTCCAAGCATTTGTCAGAGTAAGAAATGCTTCTCCCATCACCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp GTGATGGGAGAAGCATTTCTTACTCTGACAAATGCTTaGAGGTGTTCCCTGTCATCACGGAGAATAGAGGCA +
Preference number: 3 (lower is better)
Translates to: VMGEAFLTLTNA*RCSLSSRRIEA
Trigger: TGCCTCTATTCTCCGTGATGACAGGGAACACCTCCAAGCATTTGTCAGAGTAAGAAATGCTTCTCCCATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp CATGCAACCCTAGCATCTGAGAGTTCTAGATCAGCTTaGGCTACAGAGCAAGATCATGTCCCAAAGAGCAAA +
Preference number: 3 (lower is better)
Translates to: HATLASESSRSA*ATEQDHVPKSK
Trigger: TTTGCTCTTTGGGACATGATCTTGCTCTGTAGCCCAAGCTGATCTAGAACTCTCAGATGCTAGGGTTGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 72 bp CAGAGCTGCCAATGGAAAGCAGTGGCTTCTGGGAAATaGCAAACAAGGCTTGAACCTGTTTCCTTATGTACT +
Preference number: 3 (lower is better)
Translates to: QSCQWKAVASGK*QTRLEPVSLCT
Trigger: AGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCACTGCTTTCCATTGGCAGCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR TCA 72 bp GGCTTCACAGAAAGCTCAATGCTACCCTGTGATACATaGGTCCCCATTGCTCACAAACAGAAGACATCAAAC +
Preference number: 3 (lower is better)
Translates to: GFTESSMLPCDT*VPIAHKQKTSN
Trigger: GTTTGATGTCTTCTGTTTGTGAGCAATGGGGACTCATGTATCACAGGGTAGCATTGAGCTTTCTGTGAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 72 bp GGCAGGAAGAGGGCGCTACCAGATACCACTTTGGAGTaGGAAGTTGTAATTCTTGACTTTAATGGCAGGAAA +
Preference number: 3 (lower is better)
Translates to: GRKRALPDTTLE*EVVILDFNGRK
Trigger: TTTCCTGCCATTAAAGTCAAGAATTACAACTTCTCACTCCAAAGTGGTATCTGGTAGCGCCCTCTTCCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR GCA 72 bp TGGAAGCAGATATTCTTGGCTTCACAGAAAGCTCAATaGTACCCTGTGATACATGAGTCCCCATTGCTCACA +
Preference number: 3 (lower is better)
Translates to: WKQIFLASQKAQ*YPVIHESPLLT
Trigger: TGTGAGCAATGGGGACTCATGTATCACAGGGTAGCATTGAGCTTTCTGTGAAGCCAAGAATATCTGCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR TCA 72 bp GAAAGCAGTGGCTTCTGGGAAATGACAAACAAGGCTTaGACCTGTTTCCTTATGTACTCATGTCTTGACCCT +
Preference number: 3 (lower is better)
Translates to: ESSGFWEMTNKA*TCFLMYSCLDP
Trigger: AGGGTCAAGACATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCACTGCTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR TCA 72 bp TATTCTTGGCTTCACAGAAAGCTCAATGCTACCCTGTaGTACATGAGTCCCCATTGCTCACAAACAGAAGAC +
Preference number: 3 (lower is better)
Translates to: YSWLHRKLNATL*YMSPHCSQTED
Trigger: GTCTTCTGTTTGTGAGCAATGGGGACTCATGTATCACAGGGTAGCATTGAGCTTTCTGTGAAGCCAAGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp ACAAGTCCGGAGCTTACAGATTGCTTCTCATTCTTCTaGGGTCACCAGTTTCTCATCACGAAACAGATTCTT +
Preference number: 3 (lower is better)
Translates to: TSPELTDCFSFF*GHQFLITKQIL
Trigger: AAGAATCTGTTTCGTGATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGACTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR-3UTR CAA 90 bp GGGACTAGCATTACAATGTATCATCTTACAATCATGAGGTATTTTACTGAATCCTCCGGAGCTTACAGATaGCTTCTCATTCTTCTGGGG +
Preference number: 3 (lower is better)
Translates to: GTSITMYHLTIMRYFTESSGAYR*LLILLG
Trigger: CCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGA...GGATTCAGTAAAATACCTCATGATTGTAAGATGATACATTGTAATGCTAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CCA 72 bp TTTCTCATCACGAAACAGATTCTTAAAGGCACTGTGTaGGTGATGGGAGAAGCATTTCTTACTCTGACAAAT +
Preference number: 3 (lower is better)
Translates to: FLITKQILKGTV*VMGEAFLTLTN
Trigger: ATTTGTCAGAGTAAGAAATGCTTCTCCCATCACCCACACAGTGCCTTTAAGAATCTGTTTCGTGATGAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp CCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGTTCGGCCACTCGCCTaGTTTCCGCATCAAGGGACT +
Preference number: 4 (lower is better)
Translates to: PRLGDPPLCCGWSHSRRQVRPLA*FPHQGT
Trigger: AGTCCCTTGATGCGGAAACCAGGCGAGTGGCCGAAC...CTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCTGGTGCCAATACTTCTaGAGGCCTCTTGCGCAGCCT +
Preference number: 4 (lower is better)
Translates to: PPLCCGWSHSRRQEEGATWCQYF*RPLAQP
Trigger: AGGCTGCGCAAGAGGCCTGCAGAAGTATTGGCACCA...GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATGACTGTCTGTGGCCCTaGGGGTGTGGAACATGCTCG +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYDCLWP*GCGTCS
Trigger: CGAGCATGTTCCACACCCCCAGGGCCACAGACAGTC...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GACGCTGAGTGTGTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACCTGGAGTCTGAGCTATaGTTCCTTGGAGGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: DAECVPDWETLPSVVAGHLESEL*FLGGPC
Trigger: ACAGGGCCCTCCAAGGAACCATAGCTCAGACTCCAG...GTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTCAGCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTCTTGCGCAGCCTCTCTaGATGCAGGGTCTGGGTGTC +
Preference number: 4 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISLAQPL*MQGLGV
Trigger: GACACCCAGACCCTGCATTCAGAGAGGCTGCGCAAG...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCACAGTCTCTGGAGTCTaGGCTATGGTTCCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: PPLCCGWSHSRRQEEGATTVSGV*AMVPWR
Trigger: CCTCCAAGGAACCATAGCTCAGACTCCAGAGACTGT...GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GACGCTGAGTGTGTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACCCAAGTCAGCCACTCTaGACAGGCAATCCGAGAGTT +
Preference number: 4 (lower is better)
Translates to: DAECVPDWETLPSVVAGHPSQPL*TGNPRV
Trigger: AACTCTCGGATTGCCTGTGCAGAGTGGCTGACTTGG...GTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTCAGCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGAACAGGTTCCATAGGTaGCTCTGGGGCTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: PRLGDPPLCCGWSHSRRQNRFHR*LWGLTL
Trigger: CAACGTCAAGCCCCAGAGCCACCTATGGAACCTGTT...CTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp AGGACTGTGTTCAGTTGGTTGAGTGCTAGCCTGGCATGCAGGAAGCCCTGGGTCGACTGTCTGTGGCCCTaGGGGTGTGGAACATGCTCG +
Preference number: 4 (lower is better)
Translates to: RTVFSWLSASLACRKPWVDCLWP*GCGTCS
Trigger: CGAGCATGTTCCACACCCCCAGGGCCACAGACAGTC...GACCCAGGGCTTCCTGCATGCCAGGCTAGCACTCAACCAACTGAACACAGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATGTTCGGCCACTCGCCTaGTTTCCGCATCAAGGGACT +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYVRPLA*FPHQGT
Trigger: AGTCCCTTGATGCGGAAACCAGGCGAGTGGCCGAAC...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCAAGCCCTTCAGATTCATaGACAACAGCCAGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: LPSVVAGHIAGGRKRALPSPSDS*TTASFR
Trigger: CCGGAAGCTGGCTGTTGTTCATGAATCTGAAGGGCT...TGGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GCTGAGTGTGTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATACTGGAGTCTGAGCTATaGTTCCTTGGAGGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: AECVPDWETLPSVVAGHILESEL*FLGGPC
Trigger: ACAGGGCCCTCCAAGGAACCATAGCTCAGACTCCAG...TATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
3UTR CAA 72 bp AGCAGGATTGGGGTGGCAAGGACTGTGTTCAGTTGGTaGAGTGCTAGCCTGGCATGCAGGAAGCCCTGGGTC +
Preference number: 4 (lower is better)
Translates to: SRIGVARTVFSW*SASLACRKPWV
Trigger: GACCCAGGGCTTCCTGCATGCCAGGCTAGCACTCAACCAACTGAACACAGTCCTTGCCACCCCAATCCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCGACTGTCTGTGGCCCTaGGGGTGTGGAACATGCTCG +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPDCLWP*GCGTCS
Trigger: CGAGCATGTTCCACACCCCCAGGGCCACAGACAGTC...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAGTTCGTCCAAGCATTaGATGCATGGCATGGCCCAT +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYSSSKH*MHGMAH
Trigger: ATGGGCCATGCCATGCATTCAATGCTTGGACGAACT...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATTTCTGCAGCATGCCTTaGATCATAAGCATGGGCTCC +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYFCSMP*IISMGS
Trigger: GGAGCCCATGCTTATGATTCAAGGCATGCTGCAGAA...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR GCA 90 bp CCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCTTGCCAGAAGGTCTCTaGTGCTTAGCAATTCCTCTA +
Preference number: 4 (lower is better)
Translates to: PPLCCGWSHSRRQEEGATLPEGL*CLAIPL
Trigger: TAGAGGAATTGCTAAGCAGCAGAGACCTTCTGGCAA...GGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGCTGGAAGCTGATAGCTaGCATCTTCCTTTAATCTGC +
Preference number: 4 (lower is better)
Translates to: PRLGDPPLCCGWSHSRRQLEADS*HLPLIC
Trigger: GCAGATTAAAGGAAGATGGCAGCTATCAGCTTCCAG...CTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCTCTCCTTTGAAGGTCTaGTCTGCATATAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: VPDWETLPSVVAGHIAGGSPLKV*SAYKVM
Trigger: CATCACCTTATATGCAGAGCAGACCTTCAAAGGAGA...GCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCAATGAGGACTGTCTGTaGCCCTGGGGGTGTGGAACA +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPNEDCL*PWGCGT
Trigger: TGTTCCACACCCCCAGGGCCACAGACAGTCCTCATT...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp TGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTCTTGCGCAGCCTCTCTaGATGCAGGGTCTGGGTGTC +
Preference number: 4 (lower is better)
Translates to: CIQLRDQQNGCSLDTAPGLAQPL*MQGLGV
Trigger: GACACCCAGACCCTGCATTCAGAGAGGCTGCGCAAG...ACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTACTTTTCCACCATGGTaGCAATACTTCTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISTFPPW*QYFCRP
Trigger: AGGCCTGCAGAAGTATTGGCACCATGGTGGAAAAGT...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATCCAGAAGGTCTCTGCTaGTTAGCAATTCCTCTAAAC +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYPEGLC*LAIPLN
Trigger: GTTTAGAGGAATTGCTAAGCAGCAGAGACCTTCTGG...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCAAAGCTGCATTTCTGCTaGTGTGCAAACCTTCTTAGA +
Preference number: 4 (lower is better)
Translates to: LPSVVAGHIAGGRKRALPKLHFC*CANLLR
Trigger: TCTAAGAAGGTTTGCACAGCAGCAGAAATGCAGCTT...TGGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224635.2
CDS-3UTR GCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTTCCAGATCATGGATaGCACAGCCCTGGACATCAG +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLPDHG*HSPGHQ
Trigger: CTGATGTCCAGGGCTGTGGCATCCATGATCTGGAAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CCA 90 bp GGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCAATGAGGACTGTCTGTaGCCCTGGGGGTGTGGAACA +
Preference number: 4 (lower is better)
Translates to: GHSPWWHREGWYSIIRNFNEDCL*PWGCGT
Trigger: TGTTCCACACCCCCAGGGCCACAGACAGTCCTCATT...GAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATGAAAGTTGGTTCTCATaGGGAAAGCATTGCTCAAGT +
Preference number: 4 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYESWFS*GKHCSS
Trigger: ACTTGAGCAATGCTTTCCTCATGAGAACCAACTTTC...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCCTTCTGCAGGCCTCTTaGGCAGCCTCTCTGAATGCA +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGLLQAS*AASLNA
Trigger: TGCATTCAGAGAGGCTGCGCAAGAGGCCTGCAGAAG...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCTGGTGCCAATACTTCTaGAGGCCTCTTGCGCAGCCT +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGWCQYF*RPLAQP
Trigger: AGGCTGCGCAAGAGGCCTGCAGAAGTATTGGCACCA...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCCGTCAATGATTAAGTaGCTTCCGTCACGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPPSMIK*LPSRAK
Trigger: CTTTGCCCGTGACGGAAGCCACTTAATCATTGACGG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCCTGGAGTCTGAGCTATaGTTCCTTGGAGGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGLESEL*FLGGPC
Trigger: ACAGGGCCCTCCAAGGAACCATAGCTCAGACTCCAG...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTGCATGACAGTCTCTaGAGTCTGAGCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLHDSL*SLSYGS
Trigger: GGAACCATAGCTCAGACTCCAGAGACTGTCATGCAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTGGTATGAGTAATACTTaGCACCATATCCCACGAGGT +
Preference number: 4 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISGMSNT*HHIPRG
Trigger: ACCTCGTGGGATATGGTGCCAAGTATTACTCATACC...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224635.2
CDS-3UTR TCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGTCTCTGGAGTCTaGGCTATGGTTCCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGTVSGV*AMVPWR
Trigger: CCTCCAAGGAACCATAGCTCAGACTCCAGAGACTGT...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTACAGTCTCTGGAGTCTaGGCTATGGTTCCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: PIYGLWDGQFWKLSGPTATVSGV*AMVPWR
Trigger: CCTCCAAGGAACCATAGCTCAGACTCCAGAGACTGT...AGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTAGCCCTTCAGATTCATaGACAACAGCCAGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCSPSDS*TTASFR
Trigger: CCGGAAGCTGGCTGTTGTTCATGAATCTGAAGGGCT...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAAAGTTCGTCCAAGCATTaGATGCATGGCATGGCCCAT +
Preference number: 4 (lower is better)
Translates to: LWDGQFWKLSGPTALLHESSSKH*MHGMAH
Trigger: ATGGGCCATGCCATGCATTCAATGCTTGGACGAACT...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGCGCAGCCTCTCTGAATaGAGGGTCTGGGTGTCCAAT +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQRSLSE*RVWVSN
Trigger: ATTGGACACCCAGACCCTGCATTCAGAGAGGCTGCG...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGCTTCTGCAGGCCTCTTaGGCAGCCTCTCTGAATGCA +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQLLQAS*AASLNA
Trigger: TGCATTCAGAGAGGCTGCGCAAGAGGCCTGCAGAAG...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp ATCTGGAGGTACCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGACTGTCTGTGGCCCTaGGGGTGTGGAACATGCTCG +
Preference number: 4 (lower is better)
Translates to: IWRYQYMVCGMDSSGNSVDCLWP*GCGTCS
Trigger: CGAGCATGTTCCACACCCCCAGGGCCACAGACAGTC...CACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCACCACAAAGTCATCGATaGAAGGACACTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: WFVGWTVLETQWANRSSAPQSHR*KDTSAA
Trigger: TGCTGCAGAAGTGTCCTTCCATCGATGACTTTGTGG...TGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTAGAGTTCGTCAAAAATaGGGACTGTCTGTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: PIYGLWDGQFWKLSGPTARVRQK*GLSVAL
Trigger: CAGGGCCACAGACAGTCCTCATTTTTGACGAACTCT...AGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp AAGTCCGGAGCTTACAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCATCTTCTGCAGGCCTCTTaGGCAGCCTCTCTGAATGCA +
Preference number: 4 (lower is better)
Translates to: KSGAYRLLLILLGSPVSHLLQAS*AASLNA
Trigger: TGCATTCAGAGAGGCTGCGCAAGAGGCCTGCAGAAG...ATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR GCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTGGAAGCTGATAGCTaGCATCTTCCTTTAATCTGC +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLEADS*HLPLIC
Trigger: GCAGATTAAAGGAAGATGGCAGCTATCAGCTTCCAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGAACAGGTTCCATAGGTaGCTCTGGGGCTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQNRFHR*LWGLTL
Trigger: CAACGTCAAGCCCCAGAGCCACCTATGGAACCTGTT...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GGAGCTTACAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCATCACGAAAATGAGGACTGTCTGTaGCCCTGGGGGTGTGGAACA +
Preference number: 4 (lower is better)
Translates to: GAYRLLLILLGSPVSHHENEDCL*PWGCGT
Trigger: TGTTCCACACCCCCAGGGCCACAGACAGTCCTCATT...TTCGTGATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGTTCGGCCACTCGCCTaGTTTCCGCATCAAGGGACT +
Preference number: 4 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRAVRPLA*FPHQGT
Trigger: AGTCCCTTGATGCGGAAACCAGGCGAGTGGCCGAAC...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TCTAGATCAGCTTGGGCTACAGAGCAAGATCATGTCCCAAAGAGCAAAACCAAAGTTCGGCCACTCGCCTaGTTTCCGCATCAAGGGACT +
Preference number: 4 (lower is better)
Translates to: SRSAWATEQDHVPKSKTKVRPLA*FPHQGT
Trigger: AGTCCCTTGATGCGGAAACCAGGCGAGTGGCCGAAC...TTTGGTTTTGCTCTTTGGGACATGATCTTGCTCTGTAGCCCAAGCTGATCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTCCGTCAATGATTAAGTaGCTTCCGTCACGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCPSMIK*LPSRAK
Trigger: CTTTGCCCGTGACGGAAGCCACTTAATCATTGACGG...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCCTGCATGACAGTCTCTaGAGTCTGAGCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGLHDSL*SLSYGS
Trigger: GGAACCATAGCTCAGACTCCAGAGACTGTCATGCAG...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTTCCTTGCCTCCACCATaGGCCAACATCTCTCTGCGG +
Preference number: 4 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRASLPPP*ANISLR
Trigger: CCGCAGAGAGATGTTGGCCCATGGTGGAGGCAAGGA...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR TCA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAACCTGGACATCAGGTATaGGTAATACTTGGCACCATA +
Preference number: 4 (lower is better)
Translates to: LWDGQFWKLSGPTALLHEPGHQV*VILGTI
Trigger: TATGGTGCCAAGTATTACTCATACCTGATGTCCAGG...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224635.2
CDS-3UTR GCA 90 bp ATCTGGAGGTACCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGCTTCTGCAGGCCTCTTaGGCAGCCTCTCTGAATGCA +
Preference number: 4 (lower is better)
Translates to: IWRYQYMVCGMDSSGNSVLLQAS*AASLNA
Trigger: TGCATTCAGAGAGGCTGCGCAAGAGGCCTGCAGAAG...CACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TCTAGATCAGCTTGGGCTACAGAGCAAGATCATGTCCCAAAGAGCAAAACCAAATGGTGCCAATACTTCTaGAGGCCTCTTGCGCAGCCT +
Preference number: 4 (lower is better)
Translates to: SRSAWATEQDHVPKSKTKWCQYF*RPLAQP
Trigger: AGGCTGCGCAAGAGGCCTGCAGAAGTATTGGCACCA...TTTGGTTTTGCTCTTTGGGACATGATCTTGCTCTGTAGCCCAAGCTGATCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR GCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTCGTCCAAGCATTGAATaGATGGCATGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCRPSIE*MAWPIS
Trigger: TGAAATGGGCCATGCCATGCATTCAATGCTTGGACG...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCAAGCTGCATTTCTGCTaGTGTGCAAACCTTCTTAGA +
Preference number: 4 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPKLHFC*CANLLR
Trigger: TCTAAGAAGGTTTGCACAGCAGCAGAAATGCAGCTT...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CCA 90 bp AGCACAAGCTCCACACTGAGACCTTCTATCAAGAATAAAAAGCCAGGTGTGGTGAACAGGTTCCATAGGTaGCTCTGGGGCTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: STSSTLRPSIKNKKPGVVNRFHR*LWGLTL
Trigger: CAACGTCAAGCCCCAGAGCCACCTATGGAACCTGTT...CACCACACCTGGCTTTTTATTCTTGATAGAAGGTCTCAGTGTGGAGCTTGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGCCGTCAATGATTAAGTaGCTTCCGTCACGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQPSMIK*LPSRAK
Trigger: CTTTGCCCGTGACGGAAGCCACTTAATCATTGACGG...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCTGGATGCCACAGCCCTaGACATCAGGTATGAGTAAT +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGWMPQP*TSGMSN
Trigger: ATTACTCATACCTGATGTCCAGGGCTGTGGCATCCA...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCCCACAAAGTCATCGATaGAAGGACACTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGPQSHR*KDTSAA
Trigger: TGCTGCAGAAGTGTCCTTCCATCGATGACTTTGTGG...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GAGAAGGTCTGCGTCACTAGCACTTGGGAGGTGGAAGCAGATATTCTTGGCTTCAGGCCATCTAGTCCATaGGAGATGACCTTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: EKVCVTSTWEVEADILGFRPSSP*EMTFSS
Trigger: TGAAGAAAAGGTCATCTCCCATGGACTAGATGGCCT...GAAGCCAAGAATATCTGCTTCCACCTCCCAAGTGCTAGTGACGCAGACCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CAA 72 bp GGTGATGGGAGAAGCATTTCTTACTCTGACAAATGCTaGGAGGTGTTCCCTGTCATCACGGAGAATAGAGGC +
Preference number: 4 (lower is better)
Translates to: GDGRSISYSDKC*EVFPVITENRG
Trigger: GCCTCTATTCTCCGTGATGACAGGGAACACCTCCAAGCATTTGTCAGAGTAAGAAATGCTTCTCCCATCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CAA 72 bp GCGTCACTAGCACTTGGGAGGTGGAAGCAGATATTCTaGGCTTCACAGAAAGCTCAATGCTACCCTGTGATA +
Preference number: 4 (lower is better)
Translates to: ASLALGRWKQIF*ASQKAQCYPVI
Trigger: TATCACAGGGTAGCATTGAGCTTTCTGTGAAGCCAAGAATATCTGCTTCCACCTCCCAAGTGCTAGTGACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
3UTR CAA 72 bp GTGAGGGATGACTATCTGGAGGTACCAATATATGGTTaGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: VRDDYLEVPIYG*WDGQFWKLSGP
Trigger: TGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGATAGTCATCCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp TGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGGTTCACAGAGAGTTCGTCAAAAATaGGGACTGTCTGTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: WWHREGWYSIIRNFCGSQRVRQK*GLSVAL
Trigger: CAGGGCCACAGACAGTCCTCATTTTTGACGAACTCT...CTGTGAACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp AGCACAAGCTCCACACTGAGACCTTCTATCAAGAATAAAAAGCCAGGTGTGGTGAGAGTTCGTCAAAAATaGGGACTGTCTGTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: STSSTLRPSIKNKKPGVVRVRQK*GLSVAL
Trigger: CAGGGCCACAGACAGTCCTCATTTTTGACGAACTCT...CACCACACCTGGCTTTTTATTCTTGATAGAAGGTCTCAGTGTGGAGCTTGTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR TCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTCCTGGACATCAGGTATaGGTAATACTTGGCACCATA +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCPGHQV*VILGTI
Trigger: TATGGTGCCAAGTATTACTCATACCTGATGTCCAGG...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR GCA 90 bp CAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCATCACGAAACAGATTCCCAAGTCAGCCACTCTaGACAGGCAATCCGAGAGTT +
Preference number: 4 (lower is better)
Translates to: QIASHSSGVTSFSSRNRFPSQPL*TGNPRV
Trigger: AACTCTCGGATTGCCTGTGCAGAGTGGCTGACTTGG...GAATCTGTTTCGTGATGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR GCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGACTTTTCCACCATGGTaGCAATACTTCTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQTFPPW*QYFCRP
Trigger: AGGCCTGCAGAAGTATTGGCACCATGGTGGAAAAGT...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CAAGTCCGGAGCTTACAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCAACTTTTCCACCATGGTaGCAATACTTCTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: QVRSLQIASHSSGVTSFSTFPPW*QYFCRP
Trigger: AGGCCTGCAGAAGTATTGGCACCATGGTGGAAAAGT...TGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR GCA 90 bp TGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCAAATATTATACCTCTCTaGACGAATCACACCGCTGTA +
Preference number: 4 (lower is better)
Translates to: WFVGWTVLETQWANRSSANIIPL*TNHTAV
Trigger: TACAGCGGTGTGATTCGTGCAGAGAGGTATAATATT...TGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAATCTCCTTTGAAGGTCTaGTCTGCATATAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: LWDGQFWKLSGPTALLHESPLKV*SAYKVM
Trigger: CATCACCTTATATGCAGAGCAGACCTTCAAAGGAGA...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTTTCAAGGCTTCCTCTTaGGCAACTTGGAATCCTTCA +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCFKASS*ATWNPS
Trigger: TGAAGGATTCCAAGTTGCCCAAGAGGAAGCCTTGAA...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTTCCTTGCCTCCACCATaGGCCAACATCTCTCTGCGG +
Preference number: 4 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSSLPPP*ANISLR
Trigger: CCGCAGAGAGATGTTGGCCCATGGTGGAGGCAAGGA...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR TCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCGAAAGTTGGTTCTCATaGGGAAAGCATTGCTCAAGT +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGESWFS*GKHCSS
Trigger: ACTTGAGCAATGCTTTCCTCATGAGAACCAACTTTC...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGAAAGTTGGTTCTCATaGGGAAAGCATTGCTCAAGT +
Preference number: 4 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCESWFS*GKHCSS
Trigger: ACTTGAGCAATGCTTTCCTCATGAGAACCAACTTTC...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGAGCCCTTCAGATTCATaGACAACAGCCAGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMSPSDS*TTASFR
Trigger: CCGGAAGCTGGCTGTTGTTCATGAATCTGAAGGGCT...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGCCAAGTCAGCCACTCTaGACAGGCAATCCGAGAGTT +
Preference number: 4 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMPSQPL*TGNPRV
Trigger: AACTCTCGGATTGCCTGTGCAGAGTGGCTGACTTGG...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACTGGTGCCAATACTTCTaGAGGCCTCTTGCGCAGCCT +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHWCQYF*RPLAQP
Trigger: AGGCTGCGCAAGAGGCCTGCAGAAGTATTGGCACCA...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGGTTCACAGACTTTTCCACCATGGTaGCAATACTTCTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: WWHREGWYSIIRNFCGSQTFPPW*QYFCRP
Trigger: AGGCCTGCAGAAGTATTGGCACCATGGTGGAAAAGT...CTGTGAACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGCCAGAAGGTCTCTGCTaGTTAGCAATTCCTCTAAAC +
Preference number: 4 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQPEGLC*LAIPLN
Trigger: GTTTAGAGGAATTGCTAAGCAGCAGAGACCTTCTGG...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp ATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGCTCTCCTTTGAAGGTCTaGTCTGCATATAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: IQLRDQQNGCSLDTAPGGSPLKV*SAYKVM
Trigger: CATCACCTTATATGCAGAGCAGACCTTCAAAGGAGA...GCCACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp TGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGGTTCACAGCGTCCAAGCATTGAATaGATGGCATGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: WWHREGWYSIIRNFCGSQRPSIE*MAWPIS
Trigger: TGAAATGGGCCATGCCATGCATTCAATGCTTGGACG...CTGTGAACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTAATGAGGACTGTCTGTaGCCCTGGGGGTGTGGAACA +
Preference number: 4 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSNEDCL*PWGCGT
Trigger: TGTTCCACACCCCCAGGGCCACAGACAGTCCTCATT...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAGCCCCTGGTGGTATGAGTAATACTTaGCACCATATCCCACGAGGT +
Preference number: 4 (lower is better)
Translates to: CIQLRDQQNGCSLDTAPGGMSNT*HHIPRG
Trigger: ACCTCGTGGGATATGGTGCCAAGTATTACTCATACC...ACCAGGGGCTGTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR TCA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGAGTTCGTCCAAGCATTaGATGCATGGCATGGCCCAT +
Preference number: 4 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMSSSKH*MHGMAH
Trigger: ATGGGCCATGCCATGCATTCAATGCTTGGACGAACT...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR TCA 90 bp GGTGATGGGAGAAGCATTTCTTACTCTGACAAATGCTTGGAGGTGTTCCCTGTCCTAGTCCATGGGAGATaGCCTTTTCTTCATCTAGAT +
Preference number: 4 (lower is better)
Translates to: GDGRSISYSDKCLEVFPVLVHGR*PFLHLD
Trigger: ATCTAGATGAAGAAAAGGTCATCTCCCATGGACTAG...GACAGGGAACACCTCCAAGCATTTGTCAGAGTAAGAAATGCTTCTCCCATCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACCCAAGTCAGCCACTCTaGACAGGCAATCCGAGAGTT +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHPSQPL*TGNPRV
Trigger: AACTCTCGGATTGCCTGTGCAGAGTGGCTGACTTGG...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACCTTCCAGATCATGGATaGCACAGCCCTGGACATCAG +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHLPDHG*HSPGHQ
Trigger: CTGATGTCCAGGGCTGTGGCATCCATGATCTGGAAG...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAACAGGTTCCATAGGTaGCTCTGGGGCTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHNRFHR*LWGLTL
Trigger: CAACGTCAAGCCCCAGAGCCACCTATGGAACCTGTT...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGCTGCATGACAGTCTCTaGAGTCTGAGCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMLHDSL*SLSYGS
Trigger: GGAACCATAGCTCAGACTCCAGAGACTGTCATGCAG...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTTGGATGCCACAGCCCTaGACATCAGGTATGAGTAAT +
Preference number: 4 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRAWMPQP*TSGMSN
Trigger: ATTACTCATACCTGATGTCCAGGGCTGTGGCATCCA...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR TCA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTTTCTGCAGCATGCCTTaGATCATAAGCATGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSFCSMP*IISMGS
Trigger: GGAGCCCATGCTTATGATTCAAGGCATGCTGCAGAA...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR GCA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTCCAGAAGGTCTCTGCTaGTTAGCAATTCCTCTAAAC +
Preference number: 4 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRAPEGLC*LAIPLN
Trigger: GTTTAGAGGAATTGCTAAGCAGCAGAGACCTTCTGG...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACCGTCCAAGCATTGAATaGATGGCATGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHRPSIE*MAWPIS
Trigger: TGAAATGGGCCATGCCATGCATTCAATGCTTGGACG...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CCA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTCCACAAAGTCATCGATaGAAGGACACTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSPQSHR*KDTSAA
Trigger: TGCTGCAGAAGTGTCCTTCCATCGATGACTTTGTGG...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACTTGCCAGAAGGTCTCTaGTGCTTAGCAATTCCTCTA +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHLPEGL*CLAIPL
Trigger: TAGAGGAATTGCTAAGCAGCAGAGACCTTCTGGCAA...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp ATCTGGAGGTACCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGAATATTATACCTCTCTaGACGAATCACACCGCTGTA +
Preference number: 4 (lower is better)
Translates to: IWRYQYMVCGMDSSGNSVNIIPL*TNHTAV
Trigger: TACAGCGGTGTGATTCGTGCAGAGAGGTATAATATT...CACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR GCA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACAATATTATACCTCTCTaGACGAATCACACCGCTGTA +
Preference number: 4 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHNIIPL*TNHTAV
Trigger: TACAGCGGTGTGATTCGTGCAGAGAGGTATAATATT...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCAGGAAGAGGGCGCTACCAAGGTGGCTCTGGGGCTaGACGTTGAAGGCGGCGCCC +
Preference number: 5 (lower is better)
Translates to: LPSVVAGHIAGGRKRALPRWLWG*TLKAAP
Trigger: GGGCGCCGCCTTCAACGTCAAGCCCCAGAGCCACCT...TGGTAGCGCCCTCTTCCTGCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp ATGGCTGCAGTCTGGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAGGTGGCTCTGGGGCTaGACGTTGAAGGCGGCGCCC +
Preference number: 5 (lower is better)
Translates to: MAAVWTQPLVAQGRVVLYRWLWG*TLKAAP
Trigger: GGGCGCCGCCTTCAACGTCAAGCCCCAGAGCCACCT...ATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCCAGACTGCAGCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTAGGTGGCTCTGGGGCTaGACGTTGAAGGCGGCGCCC +
Preference number: 5 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISRWLWG*TLKAAP
Trigger: GGGCGCCGCCTTCAACGTCAAGCCCCAGAGCCACCT...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCGAGTTCGTCCAAGCATaGAATGCATGGCATGGCCCA +
Preference number: 5 (lower is better)
Translates to: VPDWETLPSVVAGHIAGGEFVQA*NAWHGP
Trigger: TGGGCCATGCCATGCATTCAATGCTTGGACGAACTC...GCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CAAGTCCGGAGCTTACAGATTGCTTCTCATTCTTCTGGGGTCACCAGTTTCTCAAGGTGGCTCTGGGGCTaGACGTTGAAGGCGGCGCCC +
Preference number: 5 (lower is better)
Translates to: QVRSLQIASHSSGVTSFSRWLWG*TLKAAP
Trigger: GGGCGCCGCCTTCAACGTCAAGCCCCAGAGCCACCT...TGAGAAACTGGTGACCCCAGAAGAATGAGAAGCAATCTGTAAGCTCCGGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225043.2
CDS-3UTR CAA 90 bp GTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCCTCTTCCGGATCTTGTaGGGAAAGTTGGTTCTCATG +
Preference number: 5 (lower is better)
Translates to: VPDWETLPSVVAGHIAGGLFRIL*GKLVLM
Trigger: CATGAGAACCAACTTTCCCAACAAGATCCGGAAGAG...GCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACATAGCAGGAGGCCTCATGAGGAAAGCATaGCTCAAGTCCAAGATCTTA +
Preference number: 5 (lower is better)
Translates to: VPDWETLPSVVAGHIAGGLMRKA*LKSKIL
Trigger: TAAGATCTTGGACTTGAGCAATGCTTTCCTCATGAG...GCCTCCTGCTATGTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTCACCACACCTCTCCTTaGAAGGTCTGCTCTGCATAT +
Preference number: 5 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISHHTSP*KVCSAY
Trigger: ATATGCAGAGCAGACCTTCAAAGGAGAGGTGTGGTG...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCATGAAATAAGCATGGGCTCCTaGCCTCCACCATGGGCCAAC +
Preference number: 5 (lower is better)
Translates to: LWDGQFWKLSGPTALLHEISMGS*PPPWAN
Trigger: GTTGGCCCATGGTGGAGGCAAGGAGCCCATGCTTAT...TTCATGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224635.2
CDS TCA 90 bp GCACTCCTTCCAGATCATGGATGCCACAGCCCTGGACATCAGGTATaGGTAATACTTGGCACCATATCCCACGAGGTGGCTGAACCTCAG +
Preference number: 5 (lower is better)
Translates to: ALLPDHGCHSPGHQV*VILGTISHEVAEPQ
Trigger: CTGAGGTTCAGCCACCTCGTGGGATATGGTGCCAAGTATTACTCATACCTGATGTCCAGGGCTGTGGCATCCATGATCTGGAAGGAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS TCA 90 bp ACATCAGGTATGAGTAATACTTGGCACCATATCCCACGAGGTGGCTaGACCTCAGCTGCCAGGCAGTGTCAGGAACATAGGGCAAGCCAT +
Preference number: 5 (lower is better)
Translates to: TSGMSNTWHHIPRGG*TSAARQCQEHRASH
Trigger: ATGGCTTGCCCTATGTTCCTGACACTGCCTGGCAGCTGAGGTTCAGCCACCTCGTGGGATATGGTGCCAAGTATTACTCATACCTGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CAA 90 bp TGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTCTTCTGCACACCACACCTCTCCTTaGAAGGTCTGCTCTGCATAT +
Preference number: 5 (lower is better)
Translates to: WFVGWTVLETQWANRSSAHHTSP*KVCSAY
Trigger: ATATGCAGAGCAGACCTTCAAAGGAGAGGTGTGGTG...TGCAGAAGAGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GGACACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCGAGTTCGTCCAAGCATaGAATGCATGGCATGGCCCA +
Preference number: 5 (lower is better)
Translates to: GHSPWWHREGWYSIIRNFEFVQA*NAWHGP
Trigger: TGGGCCATGCCATGCATTCAATGCTTGGACGAACTC...GAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GACGCTGAGTGTGTCCCAGACTGGGAGACCCTCCCCTCTGTTGTGGCTGGTCACCTACTCGGTAATCATTaGAAAAGTACTCCATCAGAA +
Preference number: 5 (lower is better)
Translates to: DAECVPDWETLPSVVAGHLLGNH*KSTPSE
Trigger: TTCTGATGGAGTACTTTTCAAATGATTACCGAGTAG...GTGACCAGCCACAACAGAGGGGAGGGTCTCCCAGTCTGGGACACACTCAGCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTGGCCATGGTAGATTaGATCCAGGGCGGCATAAAA +
Preference number: 5 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLAMVD*IQGGIK
Trigger: TTTTATGCCGCCCTGGATCAAATCTACCATGGCCAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CAA 90 bp CCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTGCCAATGGAAAGCAGATAAGCATGGGCTCCTaGCCTCCACCATGGGCCAAC +
Preference number: 5 (lower is better)
Translates to: PFLMLTTCSNSRAANGKQISMGS*PPPWAN
Trigger: GTTGGCCCATGGTGGAGGCAAGGAGCCCATGCTTAT...CTGCTTTCCATTGGCAGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CAA 90 bp TGGGTCAGTAGTTCACGAAGGGGCCCAGCACAGCAGGTCACTGAGGAGATCTCTCTCATGAGGAAAGCATaGCTCAAGTCCAAGATCTTA +
Preference number: 5 (lower is better)
Translates to: WVSSSRRGPAQQVTEEISLMRKA*LKSKIL
Trigger: TAAGATCTTGGACTTGAGCAATGCTTTCCTCATGAG...AGAGATCTCCTCAGTGACCTGCTGTGCTGGGCCCCTTCGTGAACTACTGACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTCTTCCGGATCTTGTaGGGAAAGTTGGTTCTCATG +
Preference number: 5 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLFRIL*GKLVLM
Trigger: CATGAGAACCAACTTTCCCAACAAGATCCGGAAGAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCCTCATGAGGAAAGCATaGCTCAAGTCCAAGATCTTA +
Preference number: 5 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPLMRKA*LKSKIL
Trigger: TAAGATCTTGGACTTGAGCAATGCTTTCCTCATGAG...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CTGCGTTCAAATCCTCCCTGCTCTGCACCCGTCTGTGTAGAGTCTAAAACACCCATCTTGTTGGGAAAGTaGGTTCTCATGAGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: LRSNPPCSAPVCVESKTPILLGK*VLMRKA
Trigger: TGCTTTCCTCATGAGAACCAACTTTCCCAACAAGAT...GGGTGTTTTAGACTCTACACAGACGGGTGCAGAGCAGGGAGGATTTGAACGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CACAGCCCCTGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTCTCTTCCGGATCTTGTaGGGAAAGTTGGTTCTCATG +
Preference number: 5 (lower is better)
Translates to: HSPWWHREGWYSIIRNFCLFRIL*GKLVLM
Trigger: CATGAGAACCAACTTTCCCAACAAGATCCGGAAGAG...ACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCAGGGGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GTCCATGCAATGATTCCTTTCCTCATGCTAACAACATGTAGCAACTCCAGAGCTCTGAGCTATGGTTCCTaGGAGGGCCCTGTGGGAAAA +
Preference number: 5 (lower is better)
Translates to: VHAMIPFLMLTTCSNSRALSYGS*EGPVGK
Trigger: TTTTCCCACAGGGCCCTCCAAGGAACCATAGCTCAG...AGCTCTGGAGTTGCTACATGTTGTTAGCATGAGGAAAGGAATCATTGCATGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp ATCTGGAGGTACCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGCTGAGCTATGGTTCCTaGGAGGGCCCTGTGGGAAAA +
Preference number: 5 (lower is better)
Translates to: IWRYQYMVCGMDSSGNSVLSYGS*EGPVGK
Trigger: TTTTCCCACAGGGCCCTCCAAGGAACCATAGCTCAG...CACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGGTACCTCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TGGTGGCACAGGGAAGGGTGGTACTCTATAATTAGAAACTTCTGTGGTTCACAGCACCACACCTCTCCTTaGAAGGTCTGCTCTGCATAT +
Preference number: 5 (lower is better)
Translates to: WWHREGWYSIIRNFCGSQHHTSP*KVCSAY
Trigger: ATATGCAGAGCAGACCTTCAAAGGAGAGGTGTGGTG...CTGTGAACCACAGAAGTTTCTAATTATAGAGTACCACCCTTCCCTGTGCCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp CCAATATATGGTTTGTGGGATGGACAGTTCTGGAAACTCAGTGGGCCAACCGCTATCTTGTTGGGAAAGTaGGTTCTCATGAGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: PIYGLWDGQFWKLSGPTAILLGK*VLMRKA
Trigger: TGCTTTCCTCATGAGAACCAACTTTCCCAACAAGAT...AGCGGTTGGCCCACTGAGTTTCCAGAACTGTCCATCCCACAAACCATATATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTCTGAGCTATGGTTCCTaGGAGGGCCCTGTGGGAAAA +
Preference number: 5 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSLSYGS*EGPVGK
Trigger: TTTTCCCACAGGGCCCTCCAAGGAACCATAGCTCAG...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS TCA 90 bp AGGGACTCCATAAGCTTCTTATCACCCAGTAACCTTTGCAGACTCTaGTACAGCTCCACGTTTGTATTCAACTTTTCCACCATGGTGCCA +
Preference number: 5 (lower is better)
Translates to: RDSISFLSPSNLCRL*YSSTFVFNFSTMVP
Trigger: TGGCACCATGGTGGAAAAGTTGAATACAAACGTGGAGCTGTATCAGAGTCTGCAAAGGTTACTGGGTGATAAGAAGCTTATGGAGTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225043.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGAGTTCGTCCAAGCATaGAATGCATGGCATGGCCCA +
Preference number: 5 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSEFVQA*NAWHGP
Trigger: TGGGCCATGCCATGCATTCAATGCTTGGACGAACTC...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TGGCTTCTGGGAAATGACAAACAAGGCTTGAACCTGTTTCCTTATGTACTCATGCTGGCCATGGTAGATTaGATCCAGGGCGGCATAAAA +
Preference number: 5 (lower is better)
Translates to: WLLGNDKQGLNLFPYVLMLAMVD*IQGGIK
Trigger: TTTTATGCCGCCCTGGATCAAATCTACCATGGCCAG...CATGAGTACATAAGGAAACAGGTTCAAGCCTTGTTTGTCATTTCCCAGAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS-3UTR CAA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTCTTCAAGGCTTCCTCTaGGGCAACTTGGAATCCTTC +
Preference number: 5 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSLQGFL*GNLESF
Trigger: GAAGGATTCCAAGTTGCCCAAGAGGAAGCCTTGAAG...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTCTTCTGCAGCATGCCTaGAATCATAAGCATGGGCTC +
Preference number: 5 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSLLQHA*NHKHGL
Trigger: GAGCCCATGCTTATGATTCAAGGCATGCTGCAGAAG...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS TCA 90 bp AGTCTGATAATGCTTGGCGAACTGGCTGACTACTCGGTAATCATTTaGAAAGTACTCCATCAGAATAGATGGAACTTCAGCAAAGTCAGT +
Preference number: 5 (lower is better)
Translates to: SLIMLGELADYSVII*KVLHQNRWNFSKVS
Trigger: ACTGACTTTGCTGAAGTTCCATCTATTCTGATGGAGTACTTTTCAAATGATTACCGAGTAGTCAGCCAGTTCGCCAAGCATTATCAGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp GAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTGGACACATCTTGTTGGGAAAGTaGGTTCTCATGAGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: EFLMHSIKRSTEWLQSGHILLGK*VLMRKA
Trigger: TGCTTTCCTCATGAGAACCAACTTTCCCAACAAGAT...GTGTCCAGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS-3UTR CAA 90 bp TCCGTGGAGTTTCTAATGCATTCAATTAAGAGATCAACAGAATGGCTGCAGTCTCTACTCGGTAATCATTaGAAAAGTACTCCATCAGAA +
Preference number: 5 (lower is better)
Translates to: SVEFLMHSIKRSTEWLQSLLGNH*KSTPSE
Trigger: TTCTGATGGAGTACTTTTCAAATGATTACCGAGTAG...AGACTGCAGCCATTCTGTTGATCTCTTAATTGAATGCATTAGAAACTCCACGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS GCA 72 bp AATGAGGACTGTCTGTGGCCCTGGGGGTGTGGAACATaGTCGCTCTACCAGCCACTCCGTCTTCTTCAAGGC +
Preference number: 6 (lower is better)
Translates to: NEDCLWPWGCGT*SLYQPLRLLQG
Trigger: GCCTTGAAGAAGACGGAGTGGCTGGTAGAGCGAGCATGTTCCACACCCCCAGGGCCACAGACAGTCCTCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225043.2
ENSMUST00000225506.2
CDS CAA 72 bp CTCTACCAGCCACTCCGTCTTCTTCAAGGCTTCCTCTaGGGCAACTTGGAATCCTTCAGGGGTGCTGAGCTC +
Preference number: 6 (lower is better)
Translates to: LYQPLRLLQGFL*GNLESFRGAEL
Trigger: GAGCTCAGCACCCCTGAAGGATTCCAAGTTGCCCAAGAGGAAGCCTTGAAGAAGACGGAGTGGCTGGTAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225043.2
ENSMUST00000225506.2
CDS CCA 72 bp TCTACCAGCCACTCCGTCTTCTTCAAGGCTTCCTCTTaGGCAACTTGGAATCCTTCAGGGGTGCTGAGCTCA +
Preference number: 6 (lower is better)
Translates to: STSHSVFFKASS*ATWNPSGVLSS
Trigger: TGAGCTCAGCACCCCTGAAGGATTCCAAGTTGCCCAAGAGGAAGCCTTGAAGAAGACGGAGTGGCTGGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225043.2
ENSMUST00000225506.2
CDS TCA 72 bp ATGAGTAATACTTGGCACCATATCCCACGAGGTGGCTaGACCTCAGCTGCCAGGCAGTGTCAGGAACATAGG +
Preference number: 6 (lower is better)
Translates to: MSNTWHHIPRGG*TSAARQCQEHR
Trigger: CCTATGTTCCTGACACTGCCTGGCAGCTGAGGTTCAGCCACCTCGTGGGATATGGTGCCAAGTATTACTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS TCA 72 bp CCAGATCATGGATGCCACAGCCCTGGACATCAGGTATaGGTAATACTTGGCACCATATCCCACGAGGTGGCT +
Preference number: 6 (lower is better)
Translates to: PDHGCHSPGHQV*VILGTISHEVA
Trigger: AGCCACCTCGTGGGATATGGTGCCAAGTATTACTCATACCTGATGTCCAGGGCTGTGGCATCCATGATCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS CCA 72 bp AGACTCACAGAGACGAGACACCATAGCTTTCGGGAGTaGCTGACCAGTCTGATAATGCTTGGCGAACTGGCT +
Preference number: 6 (lower is better)
Translates to: RLTETRHHSFRE*LTSLIMLGELA
Trigger: AGCCAGTTCGCCAAGCATTATCAGACTGGTCAGCCACTCCCGAAAGCTATGGTGTCTCGTCTCTGTGAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS CCA 72 bp TCATGTCAGACACGAGGGCATCCACAAAGTCATCGATaGAAGGACACTTCTGCAGCATGCCTGACCAGTCTG +
Preference number: 6 (lower is better)
Translates to: SCQTRGHPQSHR*KDTSAACLTSL
Trigger: CAGACTGGTCAGGCATGCTGCAGAAGTGTCCTTCCATCGATGACTTTGTGGATGCCCTCGTGTCTGACATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225506.2
CDS TCA 72 bp GTGGCTGACCAGTCTGATAATGCTTGGCGAACTGGCTaGCTACTCGGTAATCATTTGAAAAGTACTCCATCA +
Preference number: 6 (lower is better)
Translates to: VADQSDNAWRTG*LLGNHLKSTPS
Trigger: TGATGGAGTACTTTTCAAATGATTACCGAGTAGTCAGCCAGTTCGCCAAGCATTATCAGACTGGTCAGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
CDS TCA 72 bp ATGCCTGACCAGTCTGATAATGCTTGGCGAACTGGCTaGCTACTCGGTAATCATTTGAAAAGTACTCCATCA +
Preference number: 6 (lower is better)
Translates to: MPDQSDNAWRTG*LLGNHLKSTPS
Trigger: TGATGGAGTACTTTTCAAATGATTACCGAGTAGTCAGCCAGTTCGCCAAGCATTATCAGACTGGTCAGGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225506.2
CDS TCA 72 bp ATGCTTGGCGAACTGGCTGACTACTCGGTAATCATTTaGAAAGTACTCCATCAGAATAGATGGAACTTCAGC +
Preference number: 6 (lower is better)
Translates to: MLGELADYSVII*KVLHQNRWNFS
Trigger: GCTGAAGTTCCATCTATTCTGATGGAGTACTTTTCAAATGATTACCGAGTAGTCAGCCAGTTCGCCAAGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225506.2
CDS TCA 72 bp ATAAGCTTCTTATCACCCAGTAACCTTTGCAGACTCTaGTACAGCTCCACGTTTGTATTCAACTTTTCCACC +
Preference number: 6 (lower is better)
Translates to: ISFLSPSNLCRL*YSSTFVFNFST
Trigger: GGTGGAAAAGTTGAATACAAACGTGGAGCTGTATCAGAGTCTGCAAAGGTTACTGGGTGATAAGAAGCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063562.9
ENSMUST00000224635.2
ENSMUST00000225043.2
ENSMUST00000225506.2