Pregenerated sensors for MIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025389Ensembl transcript IDs: ENSMUST00000026455.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACATGACCCTCCCCACAGTCTCTTTCTTCATCCAAGGGCCGGTTTaGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTCTCTCCAACT | + |
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Preference number: 1 (lower is better) Translates to: YMTLPTVSFFIQGPV*PSLKPSGFLRLSPT Trigger: AGTTGGAGAGAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAAGAGACTGTGGGGAGGGTCATGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR GCA 90 bp | AAACTCAGACACGGCCACACGCACCCACATTCATATGAACAGTCGTaGACACACGGCGAGGGTAGCTGGAGCGGGGAGGAAGGGAAGTTT | + |
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Preference number: 1 (lower is better) Translates to: KLRHGHTHPHSYEQS*THGEGSWSGEEGKF Trigger: AAACTTCCCTTCCTCCCCGCTCCAGCTACCCTCGCCGTGTGTGCACGACTGTTCATATGAATGTGGGTGCGTGTGGCCGTGTCTGAGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CCA 90 bp | ACCCACCCCCGTGACCCTTCAAAAATCAAGGTGCATATACTTGAATaGAAGCAGGGTAAAGGCCAGAAACTCGGGTTCCCTGTGCTCACC | + |
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Preference number: 1 (lower is better) Translates to: THPRDPSKIKVHILE*KQGKGQKLGFPVLT Trigger: GGTGAGCACAGGGAACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAGTATATGCACCTTGATTTTTGAAGGGTCACGGGGGTGGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CCA 90 bp | GCTTCTGAACACACAGCCCAGCCGGTGGATGTAGGCAGGCTTATGTaGCTTTACAGAACAACTCAAGGCCCGTGTTTACTTTTCTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: ASEHTAQPVDVGRLM*LYRTTQGPCLLFSG Trigger: CCCAGAGAAAAGTAAACACGGGCCTTGAGTTGTTCTGTAAAGCCACATAAGCCTGCCTACATCCACCGGCTGGGCTGTGTGTTCAGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CAA 90 bp | GTACATGACCCTCCCCACAGTCTCTTTCTTCATCCAAGGGCCGGTTaGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTCTCTCCAAC | + |
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Preference number: 2 (lower is better) Translates to: VHDPPHSLFLHPRAG*ALPETQRLSAALSN Trigger: GTTGGAGAGAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAAGAGACTGTGGGGAGGGTCATGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | GGTAGCTGGAGCGGGGAGGAAGGGAAGTTTGCACTAACCAGTCGTGAATGCAACAACCCAGCGGCTTTCTaGGGCTCTCTCCAACTGGAG | + |
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Preference number: 2 (lower is better) Translates to: GSWSGEEGKFALTSRECNNPAAF*GSLQLE Trigger: CTCCAGTTGGAGAGAGCCGCAGAAAGCCGCTGGGTT...GTTGCATTCACGACTGGTTAGTGCAAACTTCCCTTCCTCCCCGCTCCAGCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR TCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTGTGGCTCAAGGCTTCTaGACACACAGCCCAGCCGGT | + |
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Preference number: 2 (lower is better) Translates to: IERSEINIPCSFRVTCAPVAQGF*THSPAG Trigger: ACCGGCTGGGCTGTGTGTTCAGAAGCCTTGAGCCAC...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTAGACCTCCTAACCCCTaGAATGCCTTCCCTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: IERSEINIPCSFRVTCAPRPPNP*NAFPPP Trigger: AGGAGGAGGGAAGGCATTCCAGGGGTTAGGAGGTCT...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | AAATCTTGGATTCCTCTCCCACCAGACCTCCTAACCCCTGGAATGCCTTCCCTCCTTCAAAAATCAAGGTaGATATACTTGAATGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KSWIPLPPDLLTPGMPSLLQKSR*IYLNGS Trigger: GCTTCCATTCAAGTATATGCACCTTGATTTTTGAAG...GAGGGAAGGCATTCCAGGGGTTAGGAGGTCTGGTGGGAGAGGAATCCAAGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTGATCTGGAAATAAAATCTTGGATTCCTCTCCCACCAGACCTCCTAACCGTGCATATACTTGAATaGAAGCAGGGTAAAGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: CGDLEIKSWIPLPPDLLTVHILE*KQGKGQ Trigger: CTGGCCTTTACCCTGCTTCCATTCAAGTATATGCAC...GGTTAGGAGGTCTGGTGGGAGAGGAATCCAAGATTTTATTTCCAGATCACCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CCA 90 bp | GAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTGTTCTCACCAAACTGGGGTaGGAAATGACATACATGTTG | + |
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Preference number: 2 (lower is better) Translates to: ERSEINIPCSFRVTCAPVLTKLG*EMTYML Trigger: CAACATGTATGTCATTTCCCACCCCAGTTTGGTGAG...AACAGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCTTCTTACAGGCATATGTTTTAAAGCTGGCAAGGTATATACAGGAAGCTCTCCTCCTTTCTTTCTaGTGTCTGCTTCCTGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: SVFLQAYVLKLARYIQEALLLSF*CLLPER Trigger: CCTCTCAGGAAGCAGACAGCAGAAAGAAAGGAGGAG...AGCTTCCTGTATATACCTTGCCAGCTTTAAAACATATGCCTGTAAGAAGACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTTGATGTTTGGGGTGGAGTTTTGGGTTGTCTGTCTTCTTACAGGCATATGTTGCACTAACCAGTCGTaGATGCAACTTGAAAGATTT | + |
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Preference number: 2 (lower is better) Translates to: SLMFGVEFWVVCLLTGICCTNQS*MQLERF Trigger: AAATCTTTCAAGTTGCATTCACGACTGGTTAGTGCA...ACATATGCCTGTAAGAAGACAGACAACCCAAAACTCCACCCCAAACATCAAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCTTCTTACAGGCATATGTTTTAAAGCTGGCAAGGTATATACAGGAAGCTTTTCTTTCTGCTGTCTaGTTCCTGAGAGGAACGACA | + |
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Preference number: 2 (lower is better) Translates to: SVFLQAYVLKLARYIQEAFLSAV*FLRGTT Trigger: TGTCGTTCCTCTCAGGAAGCAGACAGCAGAAAGAAA...AGCTTCCTGTATATACCTTGCCAGCTTTAAAACATATGCCTGTAAGAAGACAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR TCA 90 bp | AGAATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCGGTACACTTGTGTGGTaGTCTGGAAATAAAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: RIERSEINIPCSFRVTCAGTLVW*SGNKIL Trigger: CAAGATTTTATTTCCAGATCACCACACAAGTGTACC...GGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTCTAACCAGTCGTGAATaGAACTTGAAAGATTTCACA | + |
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Preference number: 2 (lower is better) Translates to: IERSEINIPCSFRVTCAPLTSRE*NLKDFT Trigger: TGTGAAATCTTTCAAGTTGCATTCACGACTGGTTAG...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR GCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTTACAGAGATGCCATTTaGAAAGTTCAGTTTGCTCTA | + |
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Preference number: 2 (lower is better) Translates to: IERSEINIPCSFRVTCAPYRDAI*KVQFAL Trigger: TAGAGCAAACTGAACTTTGCAAATGGCATCTCTGTA...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR GCA 72 bp | CACGGCCACACGCACCCACATTCATATGAACAGTCGTaGACACACGGCGAGGGTAGCTGGAGCGGGGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: HGHTHPHSYEQS*THGEGSWSGEE Trigger: TTCCTCCCCGCTCCAGCTACCCTCGCCGTGTGTGCACGACTGTTCATATGAATGTGGGTGCGTGTGGCCGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CCA 72 bp | CTCCCCACAGTCTCTTTCTTCATCCAAGGGCCGGTTTaGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTC | + |
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Preference number: 3 (lower is better) Translates to: LPTVSFFIQGPV*PSLKPSGFLRL Trigger: GAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAAGAGACTGTGGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CCA 72 bp | CACACAGCCCAGCCGGTGGATGTAGGCAGGCTTATGTaGCTTTACAGAACAACTCAAGGCCCGTGTTTACTT | + |
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Preference number: 3 (lower is better) Translates to: HTAQPVDVGRLM*LYRTTQGPCLL Trigger: AAGTAAACACGGGCCTTGAGTTGTTCTGTAAAGCCACATAAGCCTGCCTACATCCACCGGCTGGGCTGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CAA 90 bp | AGAATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCATCCAAGGGCCGGTTaGGCCCTCCCTGAAACCCAG | + |
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Preference number: 3 (lower is better) Translates to: RIERSEINIPCSFRVTCAHPRAG*ALPETQ Trigger: CTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATG...GGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR TCA 72 bp | GAGCGGGGAGGAAGGGAAGTTTGCACTAACCAGTCGTaGATGCAACTTGAAAGATTTCACACAGCAAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: ERGGREVCTNQS*MQLERFHTAKG Trigger: CCCTTTTGCTGTGTGAAATCTTTCAAGTTGCATTCACGACTGGTTAGTGCAAACTTCCCTTCCTCCCCGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR TCA 72 bp | GAACAACTCAAGGCCCGTGTTTACTTTTCTCTGGGATaGGCATCCATGAGATCCGTAGCCTATAGTCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: EQLKARVYFSLG*ASMRSVAYSLP Trigger: TGGGAGACTATAGGCTACGGATCTCATGGATGCTCATCCCAGAGAAAAGTAAACACGGGCCTTGAGTTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CAA 90 bp | GACACCAGATTTCCTGTTTTAGCCTCAGAGAGCAATTCTGGGCTTCAGCACCTTGAAATGACATACATGTaGACACCTCTTTCCCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: DTRFPVLASESNSGLQHLEMTYM*TPLSPP Trigger: GGGAGGGGAAAGAGGTGTCAACATGTATGTCATTTC...AAGGTGCTGAAGCCCAGAATTGCTCTCTGAGGCTAAAACAGGAAATCTGGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CCA 72 bp | CGTGACCCTTCAAAAATCAAGGTGCATATACTTGAATaGAAGCAGGGTAAAGGCCAGAAACTCGGGTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: RDPSKIKVHILE*KQGKGQKLGFP Trigger: AGGGAACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAGTATATGCACCTTGATTTTTGAAGGGTCACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR GCA 72 bp | TCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTaGGCCCCTGTTGAGACGATGCTGTTTTACGAACAA | + |
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Preference number: 3 (lower is better) Translates to: SEINIPCSFRVT*APVETMLFYEQ Trigger: TTGTTCGTAAAACAGCATCGTCTCAACAGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR-3UTR CAA 90 bp | GAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTGTTTCAACTCCTGTAAATTaGCTTCAGACACCAGATTTC | + |
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Preference number: 3 (lower is better) Translates to: ERSEINIPCSFRVTCAPVSTPVN*LQTPDF Trigger: GAAATCTGGTGTCTGAAGCAAATTTACAGGAGTTGA...AACAGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | ATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTCTCTAGCAAAGGAGCGGGCTaGGTTCATCCCCGCACCAGT | + |
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Preference number: 4 (lower is better) Translates to: IQGPVWPSLKPSGFLRLSSKGAG*VHPRTS Trigger: ACTGGTGCGGGGATGAACCCAGCCCGCTCCTTTGCT...AGAGAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR GCA 90 bp | TTTCTTCATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGGGCTACAGAGCCCATaGGGCCATTCCGCCTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: FLHPRAGLALPETQRLSAGLQSP*GHSASR Trigger: ACGAGAGGCGGAATGGCCGCATGGGCTCTGTAGCCC...CGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CAA 72 bp | CCTCCCCACAGTCTCTTTCTTCATCCAAGGGCCGGTTaGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PPHSLFLHPRAG*ALPETQRLSAA Trigger: AGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAAGAGACTGTGGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGACCCAGTACACCCAGTaGTTGCTGAAGTTCCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: FLHPRAGLALPETQRLSATQYTQ*LLKFRV Trigger: CACCCGGAACTTCAGCAACCACTGGGTGTACTGGGT...CGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR GCA 90 bp | TTTCTTCATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGTCCCAGAAGCTGGGCTaGTATATAGCAGAAAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: FLHPRAGLALPETQRLSASQKLG*YIAESP Trigger: CGGGCTTTCTGCTATATAGCAGCCCAGCTTCTGGGA...CGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | GGTAGCTGGAGCGGGGAGGAAGGGAAGTTTGCACTAACCAGTCGTGAATGCAACAGAAGATCTCCACAGTaGTGGCCTGGCCCACGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GSWSGEEGKFALTSRECNRRSPQ*WPGPRS Trigger: TGAGCGTGGGCCAGGCCACCACTGTGGAGATCTTCT...GTTGCATTCACGACTGGTTAGTGCAAACTTCCCTTCCTCCCCGCTCCAGCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR TCA 90 bp | CATATACTTGAATGGAAGCAGGGTAAAGGCCAGAAACTCGGGTTCCCTGTGCTCAGAGGTGCCCCAGGGTaGGGGAGAAGCCAACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: HILEWKQGKGQKLGFPVLRGAPG*GRSQQP Trigger: TGGCTGTTGGCTTCTCCCTCACCCTGGGGCACCTCT...GAGCACAGGGAACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAGTATATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | GACACCAGATTTCCTGTTTTAGCCTCAGAGAGCAATTCTGGGCTTCAGCACCTTTCCACAGTGGTGGCCTaGCCCACGCTCACCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DTRFPVLASESNSGLQHLSTVVA*PTLTPA Trigger: TGCTGGGGTGAGCGTGGGCCAGGCCACCACTGTGGA...AAGGTGCTGAAGCCCAGAATTGCTCTCTGAGGCTAAAACAGGAAATCTGGTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | CTTGAATGGAAGCAGGGTAAAGGCCAGAAACTCGGGTTCCCTGTGCTCACCAAACGGAGCAAGGACATCTaGGAGCCCACAAGGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LEWKQGKGQKLGFPVLTKRSKDI*EPTRKA Trigger: TGCCTTCCTTGTGGGCTCCCAGATGTCCTTGCTCCG...TTTGGTGAGCACAGGGAACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | CTTGAATGGAAGCAGGGTAAAGGCCAGAAACTCGGGTTCCCTGTGCTCACCAAAGTTTCCTCGGACAGCTaGTGGGGTGACACTGTACAG | + |
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Preference number: 4 (lower is better) Translates to: LEWKQGKGQKLGFPVLTKVSSDS*WGDTVQ Trigger: CTGTACAGTGTCACCCCACCAGCTGTCCGAGGAAAC...TTTGGTGAGCACAGGGAACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR TCA 90 bp | CTTTACAGAACAACTCAAGGCCCGTGTTTACTTTTCTCTGGGATGAGCATCCATGGACAGCTGGTGGGGTaGCACTGTACAGCACAGCCG | + |
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Preference number: 4 (lower is better) Translates to: LYRTTQGPCLLFSGMSIHGQLVG*HCTAQP Trigger: CGGCTGTGCTGTACAGTGTCACCCCACCAGCTGTCC...ATGGATGCTCATCCCAGAGAAAAGTAAACACGGGCCTTGAGTTGTTCTGTAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | CTTTACAGAACAACTCAAGGCCCGTGTTTACTTTTCTCTGGGATGAGCATCCATAGATCTCCACAGTGGTaGCCTGGCCCACGCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: LYRTTQGPCLLFSGMSIHRSPQW*PGPRSP Trigger: GGGTGAGCGTGGGCCAGGCCACCACTGTGGAGATCT...ATGGATGCTCATCCCAGAGAAAAGTAAACACGGGCCTTGAGTTGTTCTGTAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | CTCCCCACAGTCTCTTTCTTCATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGACATAGAAGAGGGTaGCAAAGAACTCAGCAAATA | + |
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Preference number: 4 (lower is better) Translates to: LPTVSFFIQGPVWPSLKPRHRRG*QRTQQI Trigger: TATTTGCTGAGTTCTTTGCCACCCTCTTCTATGTCT...GGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATGAAGAAAGAGACTGTGGGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR GCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTACGCTCACCCCAGCATaGAGCGTGTTGAGCGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: IERSEINIPCSFRVTCAPTLTPA*SVLSAR Trigger: CCTAGCGCTCAACACGCTGCATGCTGGGGTGAGCGT...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR TCA 90 bp | CTTTACAGAACAACTCAAGGCCCGTGTTTACTTTTCTCTGGGATGAGCATCCATTGGGCTCCACTGATGTaGCCCACAGTCTGCACCAAT | + |
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Preference number: 4 (lower is better) Translates to: LYRTTQGPCLLFSGMSIHWAPLM*PTVCTN Trigger: ATTGGTGCAGACTGTGGGTCACATCAGTGGAGCCCA...ATGGATGCTCATCCCAGAGAAAAGTAAACACGGGCCTTGAGTTGTTCTGTAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTTCCTCGGACAGCTGGTaGGGTGACACTGTACAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IERSEINIPCSFRVTCAPSSDSW*GDTVQH Trigger: GTGCTGTACAGTGTCACCCCACCAGCTGTCCGAGGA...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | GACACCAGATTTCCTGTTTTAGCCTCAGAGAGCAATTCTGGGCTTCAGCACCTTATGCAGAGCACGAACTaGAGCGTCAAGAAGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: DTRFPVLASESNSGLQHLMQSTN*SVKKIS Trigger: GGAGATCTTCTTGACGCTCCAGTTCGTGCTCTGCAT...AAGGTGCTGAAGCCCAGAATTGCTCTCTGAGGCTAAAACAGGAAATCTGGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| 3UTR CAA 72 bp | ACCCCCGTGACCCTTCAAAAATCAAGGTGCATATACTaGAATGGAAGCAGGGTAAAGGCCAGAAACTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: TPVTLQKSRCIY*NGSRVKARNSG Trigger: ACCCGAGTTTCTGGCCTTTACCCTGCTTCCATTCAAGTATATGCACCTTGATTTTTGAAGGGTCACGGGGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR GCA 90 bp | ATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCCCTAAGGCCAAAGCCACTTaGAAGACATGTAGGGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: IERSEINIPCSFRVTCAPKAKAT*KTCRGP Trigger: TGGGCCCCTACATGTCTTGCAAGTGGCTTTGGCCTT...AGGGGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CCA 90 bp | AGAATAGAAAGATCTGAAATAAATATTCCTTGTTCGTTCAGGGTCACCTGCGCCAGAACTCAGCAAATATaGCCCTCCAAAAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RIERSEINIPCSFRVTCARTQQI*PSKRRQ Trigger: CTGCCTCCTTTTGGAGGGCCATATTTGCTGAGTTCT...GGCGCAGGTGACCCTGAACGAACAAGGAATATTTATTTCAGATCTTTCTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CAA 90 bp | CATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTCTCCCAGCATGCAGCGTGTaGAGCGCTAGGTTTCCTCGG | + |
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Preference number: 5 (lower is better) Translates to: HPRAGLALPETQRLSAALPACSV*SARFPR Trigger: CCGAGGAAACCTAGCGCTCAACACGCTGCATGCTGG...GAGAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGATG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CCA 90 bp | CAGAGCACGAACTGGAGCGTCAAGAAGATCTCCACAGTGGTGGCCTaGCCCACGCTCACCCCAGCATGCAGCGTGTTGAGCGCTAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: QSTNWSVKKISTVVA*PTLTPACSVLSARF Trigger: AAACCTAGCGCTCAACACGCTGCATGCTGGGGTGAGCGTGGGCCAGGCCACCACTGTGGAGATCTTCTTGACGCTCCAGTTCGTGCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CAA 90 bp | ATCCAAGGGCCGGTTTGGCCCTCCCTGAAACCCAGCGGCTTTCTGCGGCTCTCTAAAGTGACCGCAGGGTaGACATGGGCTCCACTGATG | + |
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Preference number: 5 (lower is better) Translates to: IQGPVWPSLKPSGFLRLSKVTAG*TWAPLM Trigger: CATCAGTGGAGCCCATGTCAACCCTGCGGTCACTTT...AGAGAGCCGCAGAAAGCCGCTGGGTTTCAGGGAGGGCCAAACCGGCCCTTGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS TCA 90 bp | AGGAAGGCAAAAGTGACCGCAGGGTTGACATGGGCTCCACTGATGTaGCCCACAGTCTGCACCAATGTAGCCAAGGCCAGGCCAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RKAKVTAGLTWAPLM*PTVCTNVAKARPKA Trigger: GGCCTTTGGCCTGGCCTTGGCTACATTGGTGCAGACTGTGGGTCACATCAGTGGAGCCCATGTCAACCCTGCGGTCACTTTTGCCTTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CCA 90 bp | TTACAGGGCCTGAGTCTTCAGTTCGACAGGTTCCCCTGTACCCTCTaGCTGTCCATTGGAGTCACTGGGTCTGGCTCCCTTCAGGATAGA | + |
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Preference number: 5 (lower is better) Translates to: LQGLSLQFDRFPCTL*LSIGVTGSGSLQDR Trigger: TCTATCCTGAAGGGAGCCAGACCCAGTGACTCCAATGGACAGCCAGAGGGTACAGGGGAACCTGTCGAACTGAAGACTCAGGCCCTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS-3UTR CAA 90 bp | GACACCAGATTTCCTGTTTTAGCCTCAGAGAGCAATTCTGGGCTTCAGCACCTTCTCTCAGAAACACTCTaGAGCCGGGGGAAGAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: DTRFPVLASESNSGLQHLLSETL*SRGKRR Trigger: TCTCCTCTTCCCCCGGCTCAAGAGTGTTTCTGAGAG...AAGGTGCTGAAGCCCAGAATTGCTCTCTGAGGCTAAAACAGGAAATCTGGTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CCA 72 bp | GCACGAACTGGAGCGTCAAGAAGATCTCCACAGTGGTaGCCTGGCCCACGCTCACCCCAGCATGCAGCGTGT | + |
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Preference number: 6 (lower is better) Translates to: ARTGASRRSPQW*PGPRSPQHAAC Trigger: ACACGCTGCATGCTGGGGTGAGCGTGGGCCAGGCCACCACTGTGGAGATCTTCTTGACGCTCCAGTTCGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CCA 72 bp | AGAGCACGAACTGGAGCGTCAAGAAGATCTCCACAGTaGTGGCCTGGCCCACGCTCACCCCAGCATGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: RARTGASRRSPQ*WPGPRSPQHAA Trigger: CGCTGCATGCTGGGGTGAGCGTGGGCCAGGCCACCACTGTGGAGATCTTCTTGACGCTCCAGTTCGTGCTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS GCA 72 bp | AATGTAGCCAAGGCCAGGCCAAAGGCCAAAGCCACTTaGAAGACATGTAGGGGCCCAGGGGCCCAACGTAGC | + |
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Preference number: 6 (lower is better) Translates to: NVAKARPKAKAT*KTCRGPGAQRS Trigger: GCTACGTTGGGCCCCTGGGCCCCTACATGTCTTGCAAGTGGCTTTGGCCTTTGGCCTGGCCTTGGCTACATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CAA 72 bp | AGTTCGACAGGTTCCCCTGTACCCTCTGGCTGTCCATaGGAGTCACTGGGTCTGGCTCCCTTCAGGATAGAC | + |
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Preference number: 6 (lower is better) Translates to: SSTGSPVPSGCP*ESLGLAPFRID Trigger: GTCTATCCTGAAGGGAGCCAGACCCAGTGACTCCAATGGACAGCCAGAGGGTACAGGGGAACCTGTCGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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| CDS CCA 72 bp | AGACATAGAAGAGGGTGGCAAAGAACTCAGCAAATATaGCCCTCCAAAAGGAGGCAGACCGAAGTTCCCACA | + |
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Preference number: 6 (lower is better) Translates to: RHRRGWQRTQQI*PSKRRQTEVPT Trigger: TGTGGGAACTTCGGTCTGCCTCCTTTTGGAGGGCCATATTTGCTGAGTTCTTTGCCACCCTCTTCTATGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026455.8 |
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