RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MINDY3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026767

Ensembl transcript IDs: ENSMUST00000028105.13, ENSMUST00000124515.2, ENSMUST00000124603.8, ENSMUST00000129489.8, ENSMUST00000129993.3, ENSMUST00000135397.8, ENSMUST00000144645.8, ENSMUST00000151529.8, ENSMUST00000154899.7, ENSMUST00000155530.8

Found 156 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCGACAGCCAAGGCAGAAGAATGTTCCACTTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCTAGCCGCTTCCTCGGGGGTCCTTCC +
Preference number: 1 (lower is better)
Translates to: FDSQGRRMFHLATRL*RTPRNPSRFLGGPS
Trigger: GGAAGGACCCCCGAGGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR GCA 90 bp CAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGG +
Preference number: 1 (lower is better)
Translates to: QRSVVHSNSMYGHLV*RQRLIGVSSVCSMG
Trigger: CCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR GCA 90 bp ACTGCATGCCCCGTCAGTAGGAGGTTAATTAAGCTTTGGCTGCCATaGCCGTACACAGGGTCTATCAAAGGCTCATTTGCATCTTCAATT +
Preference number: 1 (lower is better)
Translates to: TACPVSRRLIKLWLP*PYTGSIKGSFASSI
Trigger: AATTGAAGATGCAAATGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCTCCTACTGACGGGGCATGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CCA 90 bp AACCACTGCAGTCCCTTCCACATACATTACTATATACAGGCAGCGTaGCCAAGAAGACCAAGGACAGGATTGGGAATCAGGAACTCAGTT +
Preference number: 1 (lower is better)
Translates to: NHCSPFHIHYYIQAA*PRRPRTGLGIRNSV
Trigger: AACTGAGTTCCTGATTCCCAATCCTGTCCTTGGTCTTCTTGGCCACGCTGCCTGTATATAGTAATGTATGTGGAAGGGACTGCAGTGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR CCA 90 bp ACATTAGATACTGCATGCCCCGTCAGTAGGAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACAGGGTCTATCAAAGGCTCATTTGCA +
Preference number: 1 (lower is better)
Translates to: TLDTACPVSRRLIKL*LPCPYTGSIKGSFA
Trigger: TGCAAATGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCTCCTACTGACGGGGCATGCAGTATCTAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp GCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTTCCTCGGGGGTCCTAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 2 (lower is better)
Translates to: ATRLCRTPRNPSRFLGGPKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...AGGACCCCCGAGGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151529.8
3UTR-3UTR TCA 90 bp GAATGTTCCACTTGGCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTCTTCTGCTCTTCCTCTaGGCAATCCCGCCAGGACGA +
Preference number: 2 (lower is better)
Translates to: ECSTWQLDCAGLPEILAALLLFL*AIPPGR
Trigger: TCGTCCTGGCGGGATTGCTCAGAGGAAGAGCAGAAG...AGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151529.8
3UTR-3UTR GCA 90 bp ACTTGGCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTTCCTCGGGGTTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCT +
Preference number: 2 (lower is better)
Translates to: TWQLDCAGLPEILAASSGLATRL*RTPRNP
Trigger: AGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAA...CCCCGAGGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
3UTR-3UTR TCA 90 bp CAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATGAGAAGTTGCATTCCTaGGCACTCTCTATCACCATC +
Preference number: 2 (lower is better)
Translates to: QLSEGQRSVVHSNSMYGHEKLHS*ALSITI
Trigger: GATGGTGATAGAGAGTGCTCAGGAATGCAACTTCTC...ATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp ACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCAAGGACAGCGGTCTGTaGTCCACAGTAACTCAATGT +
Preference number: 2 (lower is better)
Translates to: TQLSEGQRSVVHSNSMYGKDSGL*STVTQC
Trigger: ACATTGAGTTACTGTGGACCACAGACCGCTGTCCTT...GCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CAA 90 bp GAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATTaGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGC +
Preference number: 2 (lower is better)
Translates to: EGQRSVVHSNSMYGH*VCRQRLIGVSSVCS
Trigger: GCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp AAACTCTTCTGGCTTGTTCCGAAGGCGCTTCAGGGGCAACTAAAGCCATATCCTTTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCT +
Preference number: 2 (lower is better)
Translates to: KLFWLVPKALQGQLKPYPLATRL*RTPRNP
Trigger: AGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAA...AGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR-3UTR CCA 90 bp ACTCTTCTGGCTTGTTCCGAAGGCGCTTCAGGGGCAACTAAAGCCATATCCTTGCCCCCTTTCAACACCTaGTTTGACAATCTTCCTTAC +
Preference number: 2 (lower is better)
Translates to: TLLACSEGASGATKAISLPPFNT*FDNLPY
Trigger: GTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGG...CAAGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp ACTCTTCTGGCTTGTTCCGAAGGCGCTTCAGGGGCAACTAAAGCCATATCCTTGAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACA +
Preference number: 2 (lower is better)
Translates to: TLLACSEGASGATKAISLRLIKL*LPCPYT
Trigger: TGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCT...CAAGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CAA 90 bp CATTACTATATACAGGCAGCGTGGCCAAGAAGACCAAGGACAGGATaGGGAATCAGGAACTCAGTTCCAATCCCTGCTCTGTCAATGACT +
Preference number: 2 (lower is better)
Translates to: HYYIQAAWPRRPRTG*GIRNSVPIPALSMT
Trigger: AGTCATTGACAGAGCAGGGATTGGAACTGAGTTCCTGATTCCCAATCCTGTCCTTGGTCTTCTTGGCCACGCTGCCTGTATATAGTAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR TCA 90 bp CATTTGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGGGTCCAAGGCTTTCATaGCATCTTCTAGAAGGGAGT +
Preference number: 2 (lower is better)
Translates to: HLVCRQRLIGVSSVCSMGGPRLS*HLLEGS
Trigger: ACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACC...CCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp CATTTGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGAAGGACAGCGGTCTGTaGTCCACAGTAACTCAATGT +
Preference number: 2 (lower is better)
Translates to: HLVCRQRLIGVSSVCSMGKDSGL*STVTQC
Trigger: ACATTGAGTTACTGTGGACCACAGACCGCTGTCCTT...CCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp TTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATAACCACTGCTCTGTCAATGACTTaGTGTGTGACTCTGGGTGAG +
Preference number: 2 (lower is better)
Translates to: LIGVSSVCSMGSSKPITTALSMT*CVTLGE
Trigger: CTCACCCAGAGTCACACAGCAAGTCATTGACAGAGC...AGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR GCA 90 bp CAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATTATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGA +
Preference number: 2 (lower is better)
Translates to: QLSEGQRSVVHSNSMYGHYGHLV*RQRLIG
Trigger: TCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA...ATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp CATTTGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGCCCCCTTTCAACACCTaGTTTGACAATCTTCCTTAC +
Preference number: 2 (lower is better)
Translates to: HLVCRQRLIGVSSVCSMGPPFNT*FDNLPY
Trigger: GTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGG...CCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp GGGTCCTTCCTCTCAACCATGAAACCAAGCAGTATGATCCAGAGCTGTCATAAGGAAGAATGTTCCACTTaGCAACTAGACTGTGCAGGA +
Preference number: 2 (lower is better)
Translates to: GSFLSTMKPSSMIQSCHKEECST*QLDCAG
Trigger: TCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTC...CTTATGACAGCTCTGGATCATACTGCTTGGTTTCATGGTTGAGAGGAAGGACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
3UTR CAA 90 bp ACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTaGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTAT +
Preference number: 2 (lower is better)
Translates to: TPGLTIFLTNTQATQ*SEGQRSVVHSNSMY
Trigger: ATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp TATGGCCATTTGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCTTATGTAGCCAGTCATaGATCCCCCTTTCAACACCT +
Preference number: 2 (lower is better)
Translates to: YGHLVCRQRLIGVSSVCSLCSQS*IPLSTP
Trigger: AGGTGTTGAAAGGGGGATTCATGACTGGCTACATAA...GCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp CAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATATTATGTAGCCAGTCATaGATCCCCCTTTCAACACCT +
Preference number: 2 (lower is better)
Translates to: QRLIGVSSVCSMGSSKPILCSQS*IPLSTP
Trigger: AGGTGTTGAAAGGGGGATTCATGACTGGCTACATAA...TATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp CAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATCCAGGCAGGTTTTTGTaGCTGATTCCATTTATAAAA +
Preference number: 2 (lower is better)
Translates to: QLSEGQRSVVHSNSMYGHPGRFL*LIPFIK
Trigger: TTTTATAAATGGAATCAGTCACAAAAACCTGCCTGG...ATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp ACTCTTCTGGCTTGTTCCGAAGGCGCTTCAGGGGCAACTAAAGCCATATCCTTGCCAGGCAGGTTTTTGTaGCTGATTCCATTTATAAAA +
Preference number: 2 (lower is better)
Translates to: TLLACSEGASGATKAISLPGRFL*LIPFIK
Trigger: TTTTATAAATGGAATCAGTCACAAAAACCTGCCTGG...CAAGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCCATAAAACCACATTCCTGTaGACCTGTGAACAAATAGAA +
Preference number: 2 (lower is better)
Translates to: QLSEGQRSVVHSNSMYGHKTTFL*TCEQIE
Trigger: TTCTATTTGTTCACAGGTGCACAGGAATGTGGTTTT...ATGGCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp ACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCAAAACCACATTCCTGTaGACCTGTGAACAAATAGAA +
Preference number: 2 (lower is better)
Translates to: TQLSEGQRSVVHSNSMYGKTTFL*TCEQIE
Trigger: TTCTATTTGTTCACAGGTGCACAGGAATGTGGTTTT...GCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp ACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTGAGCGAAGGCTCAGTTCCAATCCCTaGTCTGTCAATGACTTGCTG +
Preference number: 2 (lower is better)
Translates to: TWFDNLPYKYSGNSVERRLSSNP*SVNDLL
Trigger: CAGCAAGTCATTGACAGAGCAGGGATTGGAACTGAG...CCTTCGCTCAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR CCA 90 bp TCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCACCCCCTTTCAACACCTaGTTTGACAATCTTCCTTAC +
Preference number: 2 (lower is better)
Translates to: SGSETRSKAFMTSSRRESPPFNT*FDNLPY
Trigger: GTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGG...TGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp CCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTGAGCGAAGGATATATACAGGCAGCGTaGCCAAGAAGACCAAGGACA +
Preference number: 2 (lower is better)
Translates to: PGLTIFLTNTQATQLSEGYIQAA*PRRPRT
Trigger: TGTCCTTGGTCTTCTTGGCCACGCTGCCTGTATATA...TCCTTCGCTCAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR TCA 90 bp ATGGGGTCTTCAAAACCCATAACCACTGCAGTCCCTTCCACATACATTACCTTTTTTGTTTCCCCACATTaGATACTGGTCCAAGACAGC +
Preference number: 2 (lower is better)
Translates to: MGSSKPITTAVPSTYITFFVSPH*ILVQDS
Trigger: GCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAA...AAAGGTAATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTTGAAGACCCCAT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCGGTCCAAGGCTTTCATaGCATCTTCTAGAAGGGAGT +
Preference number: 2 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGGPRLS*HLLEGS
Trigger: ACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACC...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGACAAGAAAGCTGGCTTaGAGGAGAGTGTACTTAGCA +
Preference number: 2 (lower is better)
Translates to: PLSTPGLTIFLTNTQATQTRKLA*RRVYLA
Trigger: TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGT...CTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp TTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATAACCACTCCCCCTTTCAACACCTaGTTTGACAATCTTCCTTAC +
Preference number: 2 (lower is better)
Translates to: LIGVSSVCSMGSSKPITTPPFNT*FDNLPY
Trigger: GTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGG...AGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp ACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCAGCTATGAATCCAAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACA +
Preference number: 2 (lower is better)
Translates to: TRSKAFMTSSRRESAMNPRLIKL*LPCPYT
Trigger: TGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCT...TGGATTCATAGCTGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp CCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTTGGAAAACTCTTCTaGCTTGTTCCGAAGGCGCTT +
Preference number: 2 (lower is better)
Translates to: PLSTPGLTIFLTNTQATQFGKLF*LVPKAL
Trigger: AAGCGCCTTCGGAACAAGCCAGAAGAGTTTTCCAAA...CTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCTTATGTAGCCAGTCATaGATCCCCCTTTCAACACCT +
Preference number: 2 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGLCSQS*IPLSTP
Trigger: AGGTGTTGAAAGGGGGATTCATGACTGGCTACATAA...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp AAAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTTATGTAGCCAGTCATaGATCCCCCTTTCAACACCT +
Preference number: 2 (lower is better)
Translates to: KANRFFPYRCKNHIPVHLLCSQS*IPLSTP
Trigger: AGGTGTTGAAAGGGGGATTCATGACTGGCTACATAA...CAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp ATATACTCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGTTATGTAGCCAGTCATaGATCCCCCTTTCAACACCT +
Preference number: 2 (lower is better)
Translates to: IYSGSETRSKAFMTSSRRLCSQS*IPLSTP
Trigger: AGGTGTTGAAAGGGGGATTCATGACTGGCTACATAA...CCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp CAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCATTCCTGTGCACCTGTaGACAAATAGAAGTTCCCAC +
Preference number: 2 (lower is better)
Translates to: QESVLSNTVKVRIVSPQSIPVHL*TNRSSH
Trigger: GTGGGAACTTCTATTTGTTCACAGGTGCACAGGAAT...GCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp ATATACTCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGATTCCTGTGCACCTGTaGACAAATAGAAGTTCCCAC +
Preference number: 2 (lower is better)
Translates to: IYSGSETRSKAFMTSSRRIPVHL*TNRSSH
Trigger: GTGGGAACTTCTATTTGTTCACAGGTGCACAGGAAT...CCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGAAAACCCATAACCACTaGAGTCCCTTCCACATACAT +
Preference number: 2 (lower is better)
Translates to: PLSTPGLTIFLTNTQATQKTHNH*SPFHIH
Trigger: ATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTT...CTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp CTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTGGACCAAGGACAGGATTaGGAATCAGGAACTCAGTTC +
Preference number: 2 (lower is better)
Translates to: LSTPGLTIFLTNTQATQLDQGQD*ESGTQF
Trigger: GAACTGAGTTCCTGATTCCCAATCCTGTCCTTGGTC...CAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR TCA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAGAGAAGTTGCATTCCTaGGCACTCTCTATCACCATC +
Preference number: 2 (lower is better)
Translates to: YHTYKYTRKLACRRVYLAEKLHS*ALSITI
Trigger: GATGGTGATAGAGAGTGCTCAGGAATGCAACTTCTC...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAAGAGAAGTTGCATTCCTaGGCACTCTCTATCACCATC +
Preference number: 2 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKEKLHS*ALSITI
Trigger: GATGGTGATAGAGAGTGCTCAGGAATGCAACTTCTC...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGA +
Preference number: 2 (lower is better)
Translates to: PLSTPGLTIFLTNTQATQYGHLV*RQRLIG
Trigger: TCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA...CTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp ACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCAGCTATGAATCCATATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGA +
Preference number: 2 (lower is better)
Translates to: TRSKAFMTSSRRESAMNPYGHLV*RQRLIG
Trigger: TCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA...TGGATTCATAGCTGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp TACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAACAGATTCTTCCCCTATCCCCCCTTTCAACACCTaGTTTGACAATCTTCCTTAC +
Preference number: 2 (lower is better)
Translates to: YSESENSKPTKQTDSSPIPPFNT*FDNLPY
Trigger: GTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGG...GATAGGGGAAGAATCTGTTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp AAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTACAGCTGCTTGTTCATaGATACCGAGAAGTTGCATT +
Preference number: 2 (lower is better)
Translates to: KQTDSSPIVVKTTFLCTCTAACS*IPRSCI
Trigger: AATGCAACTTCTCGGTATCCATGAACAAGCAGCTGT...ACAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp ATATACTCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGACAGCTGCTTGTTCATaGATACCGAGAAGTTGCATT +
Preference number: 2 (lower is better)
Translates to: IYSGSETRSKAFMTSSRRTAACS*IPRSCI
Trigger: AATGCAACTTCTCGGTATCCATGAACAAGCAGCTGT...CCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp TACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAACAGATTCTTCCCCTATCATGGACCCAACAATATaGTTCCTAGTCCTTCTGGAT +
Preference number: 2 (lower is better)
Translates to: YSESENSKPTKQTDSSPIMDPTI*FLVLLD
Trigger: ATCCAGAAGGACTAGGAATCATATTGTTGGGTCCAT...GATAGGGGAAGAATCTGTTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTGAAAACCCATAACCACTaGAGTCCCTTCCACATACAT +
Preference number: 2 (lower is better)
Translates to: LSTPGLTIFLTNTQATQLKTHNH*SPFHIH
Trigger: ATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTT...CAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp TACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAACAGATTCTTCCCCTATCAAAACCCATAACCACTaGAGTCCCTTCCACATACAT +
Preference number: 2 (lower is better)
Translates to: YSESENSKPTKQTDSSPIKTHNH*SPFHIH
Trigger: ATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTT...GATAGGGGAAGAATCTGTTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp TCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACA +
Preference number: 2 (lower is better)
Translates to: SCITTLINIQESWLAGECRLIKL*LPCPYT
Trigger: TGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCT...ACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATATTTGTTTCCCCACATTaGATACTGGTCCAAGACAGC +
Preference number: 2 (lower is better)
Translates to: HTYKYTRKLACRRVYLAIFVSPH*ILVQDS
Trigger: GCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAA...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATAACAAGAAAGCTGGCTTaGAGGAGAGTGTACTTAGCA +
Preference number: 2 (lower is better)
Translates to: HTYKYTRKLACRRVYLAITRKLA*RRVYLA
Trigger: TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGT...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp TTTATATACTCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAACAGCTGCTTGTTCATaGATACCGAGAAGTTGCATT +
Preference number: 2 (lower is better)
Translates to: FIYSGSETRSKAFMTSSRTAACS*IPRSCI
Trigger: AATGCAACTTCTCGGTATCCATGAACAAGCAGCTGT...TCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp AGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAAAGATTCTGGACCACTaGAGCCCTGATCAGGAAAAA +
Preference number: 2 (lower is better)
Translates to: RFSCITTLINIQESWLAGKILDH*SPDQEK
Trigger: TTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTT...TCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCACAAAAATTGACTTCTaGATTTTGATATGGAGGCTG +
Preference number: 2 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGTKIDF*ILIWRL
Trigger: CAGCCTCCATATCAAAATGCAGAAGTCAATTTTTGT...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CCA 90 bp GGAATTTTGGAGATTTCAAGTAAGAACCAACCTTACAATATCGTAAAGCTTCCAGAAGAATGTTCCACTTaGCAACTAGACTGTGCAGGA +
Preference number: 2 (lower is better)
Translates to: GILEISSKNQPYNIVKLPEECST*QLDCAG
Trigger: TCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTC...TGGAAGCTTTACGATATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR-3UTR CCA 90 bp GTAGAGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCACAGCTGCTTGTTCATaGATACCGAGAAGTTGCATT +
Preference number: 2 (lower is better)
Translates to: VEILMHYHTYKYTRKLACTAACS*IPRSCI
Trigger: AATGCAACTTCTCGGTATCCATGAACAAGCAGCTGT...GCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCTCTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp TCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTCCAGGCAGGTTTTTGTaGCTGATTCCATTTATAAAA +
Preference number: 2 (lower is better)
Translates to: SCITTLINIQESWLAGECPGRFL*LIPFIK
Trigger: TTTTATAAATGGAATCAGTCACAAAAACCTGCCTGG...ACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATATATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGA +
Preference number: 2 (lower is better)
Translates to: HTYKYTRKLACRRVYLAIYGHLV*RQRLIG
Trigger: TCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR TCA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACCAGGCAGGTTTTTGTaGCTGATTCCATTTATAAAA +
Preference number: 2 (lower is better)
Translates to: HTYKYTRKLACRRVYLAIPGRFL*LIPFIK
Trigger: TTTTATAAATGGAATCAGTCACAAAAACCTGCCTGG...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp GTAGAGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAAAACCACATTCCTGTaGACCTGTGAACAAATAGAA +
Preference number: 2 (lower is better)
Translates to: VEILMHYHTYKYTRKLACKTTFL*TCEQIE
Trigger: TTCTATTTGTTCACAGGTGCACAGGAATGTGGTTTT...GCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCTCTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR GCA 90 bp GTAGAGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCACAAAAATTGACTTCTaGATTTTGATATGGAGGCTG +
Preference number: 2 (lower is better)
Translates to: VEILMHYHTYKYTRKLACTKIDF*ILIWRL
Trigger: CAGCCTCCATATCAAAATGCAGAAGTCAATTTTTGT...GCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCTCTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp GACTGTGCAGGACTCCCAGAAATCCTAGCCGCTTCCTCGGGGGTCCTTCCTCTCAGAAGAATGTTCCACTaGGCAACTAGACTGTGCAGG +
Preference number: 3 (lower is better)
Translates to: DCAGLPEILAASSGVLPLRRMFH*ATRLCR
Trigger: CCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCT...GAGAGGAAGGACCCCCGAGGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
3UTR GCA 72 bp CAAGGCAGAAGAATGTTCCACTTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCTAGCCGCTTCCTCGGG +
Preference number: 3 (lower is better)
Translates to: QGRRMFHLATRL*RTPRNPSRFLG
Trigger: CCCGAGGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR CCA 72 bp ACTGCATGCCCCGTCAGTAGGAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACAGGGTCTATCAAAGGC +
Preference number: 3 (lower is better)
Translates to: TACPVSRRLIKL*LPCPYTGSIKG
Trigger: GCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCTCCTACTGACGGGGCATGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCGAAAACTCTTCTGGCTaGTTCCGAAGGCGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: TQLSEGQRSVVHSNSMYGENSSG*FRRRFR
Trigger: CCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTC...GCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ACTCAGGCAACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAGTATGGCCATTTGGTTaGCAGACAGCGTTTAATAGG +
Preference number: 3 (lower is better)
Translates to: TQATQLSEGQRSVVHSNSVWPFG*QTAFNR
Trigger: CCTATTAAACGCTGTCTGCAAACCAAATGGCCATAC...TGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGTTGCCTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CCA 72 bp AGCTCTTCGACAGCCAAGGCAGAAGAATGTTCCACTTaGCAACTAGACTGTGCAGGACTCCCAGAAATCCTA +
Preference number: 3 (lower is better)
Translates to: SSSTAKAEECST*QLDCAGLPEIL
Trigger: TAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR-3UTR CAA 90 bp ACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCGTATGGCCATTTGGTTaGCAGACAGCGTTTAATAGG +
Preference number: 3 (lower is better)
Translates to: TQLSEGQRSVVHSNSMYGVWPFG*QTAFNR
Trigger: CCTATTAAACGCTGTCTGCAAACCAAATGGCCATAC...GCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp AAACTCTTCTGGCTTGTTCCGAAGGCGCTTCAGGGGCAACTAAAGCCATATCCTAGAAGAATGTTCCACTaGGCAACTAGACTGTGCAGG +
Preference number: 3 (lower is better)
Translates to: KLFWLVPKALQGQLKPYPRRMFH*ATRLCR
Trigger: CCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCT...AGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
3UTR CCA 72 bp AGTCCCTTCCACATACATTACTATATACAGGCAGCGTaGCCAAGAAGACCAAGGACAGGATTGGGAATCAGG +
Preference number: 3 (lower is better)
Translates to: SPFHIHYYIQAA*PRRPRTGLGIR
Trigger: CCTGATTCCCAATCCTGTCCTTGGTCTTCTTGGCCACGCTGCCTGTATATAGTAATGTATGTGGAAGGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR CAA 90 bp ACTCAGGCAACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCACTTTCAACACCTGGTTaGACAATCTTCCTTACAAAT +
Preference number: 3 (lower is better)
Translates to: TQATQLSEGQRSVVHSNSLSTPG*TIFLTN
Trigger: ATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG...TGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGTTGCCTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCGAAAACTCTTCTGGCTaGTTCCGAAGGCGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGENSSG*FRRRFR
Trigger: CCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTC...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp CATTTGGTTTGCAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTTCCGGATCATAGGTTaGGAAAACTCTTCTGGCTTG +
Preference number: 3 (lower is better)
Translates to: HLVCRQRLIGVSSVCSMGFRIIG*ENSSGL
Trigger: CAAGCCAGAAGAGTTTTCCAAACCTATGATCCGGAA...CCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR GCA 72 bp GTGGTCCACAGTAACTCAATGTATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGAGTGTCGTCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: VVHSNSMYGHLV*RQRLIGVSSVC
Trigger: ACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATACATTGAGTTACTGTGGACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR GCA 72 bp CACTCTCTATCACCATCCCATACATTAGATACTGCATaGCCCGTCAGTAGGAGGTTAATTAAGCTTTGGCTG +
Preference number: 3 (lower is better)
Translates to: HSLSPSHTLDTA*PVSRRLIKLWL
Trigger: CAGCCAAAGCTTAATTAACCTCCTACTGACGGGGCATGCAGTATCTAATGTATGGGATGGTGATAGAGAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAGAAAACTCTTCTGGCTaGTTCCGAAGGCGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: YHTYKYTRKLACRRVYLAENSSG*FRRRFR
Trigger: CCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTC...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCGTATGGCCATTTGGTTaGCAGACAGCGTTTAATAGG +
Preference number: 3 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGVWPFG*QTAFNR
Trigger: CCTATTAAACGCTGTCTGCAAACCAAATGGCCATAC...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ATACATTACTATATACAGGCAGCGTGGCCAAGAAGACCAAGGACAGGATTGGGACTTTCAACACCTGGTTaGACAATCTTCCTTACAAAT +
Preference number: 3 (lower is better)
Translates to: IHYYIQAAWPRRPRTGLGLSTPG*TIFLTN
Trigger: ATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG...TCCCAATCCTGTCCTTGGTCTTCTTGGCCACGCTGCCTGTATATAGTAATGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
3UTR-3UTR CAA 90 bp TGTTCATGGATACCGAGAAGTTGCATTCCTGAGCACTCTCTATCACCATCCCATCTTTCAACACCTGGTTaGACAATCTTCCTTACAAAT +
Preference number: 3 (lower is better)
Translates to: CSWIPRSCIPEHSLSPSHLSTPG*TIFLTN
Trigger: ATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG...ATGGGATGGTGATAGAGAGTGCTCAGGAATGCAACTTCTCGGTATCCATGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAGTATGGCCATTTGGTTaGCAGACAGCGTTTAATAGG +
Preference number: 3 (lower is better)
Translates to: YHTYKYTRKLACRRVYLAVWPFG*QTAFNR
Trigger: CCTATTAAACGCTGTCTGCAAACCAAATGGCCATAC...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp ATATACTCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGAGCAAGACTCCAAATTaGTTTCCCCACATTGAATAC +
Preference number: 3 (lower is better)
Translates to: IYSGSETRSKAFMTSSRRSKTPN*FPHIEY
Trigger: GTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCT...CCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp AAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTCTTTCAACACCTGGTTaGACAATCTTCCTTACAAAT +
Preference number: 3 (lower is better)
Translates to: KQTDSSPIVVKTTFLCTCLSTPG*TIFLTN
Trigger: ATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG...ACAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATTTGTTTCCCCACATaGAATACTGGTCCAAGACAG +
Preference number: 3 (lower is better)
Translates to: YHTYKYTRKLACRRVYLAICFPT*NTGPRQ
Trigger: CTGTCTTGGACCAGTATTCAATGTGGGGAAACAAAT...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000155530.8
3UTR TCA 72 bp CCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTaGACAAATAGAAGTTCCCACATAGTAGCCTTTTTA +
Preference number: 3 (lower is better)
Translates to: PYRCKNHIPVHL*TNRSSHIVAFL
Trigger: TAAAAAGGCTACTATGTGGGAACTTCTATTTGTTCACAGGTGCACAGGAATGTGGTTTTTACAACGATAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CCA 72 bp GTGAGTTTCGCTGCCAACAATCCAAATAGGGAATTTTaGAGATTTCAAGTAAGAACCAACCTTACAATATCG +
Preference number: 3 (lower is better)
Translates to: VSFAANNPNREF*RFQVRTNLTIS
Trigger: CGATATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCCCTATTTGGATTGTTGGCAGCGAAACTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp TCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTATTGACTTCTGCATTTaGATATGGAGGCTGCTAAAA +
Preference number: 3 (lower is better)
Translates to: SCITTLINIQESWLAGECIDFCI*IWRLLK
Trigger: TTTTAGCAGCCTCCATATCAAAATGCAGAAGTCAAT...ACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACTTTCAACACCTGGTTaGACAATCTTCCTTACAAAT +
Preference number: 3 (lower is better)
Translates to: HTYKYTRKLACRRVYLAILSTPG*TIFLTN
Trigger: ATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR-3UTR CAA 90 bp AGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAATTGACTTCTGCATTTaGATATGGAGGCTGCTAAAA +
Preference number: 3 (lower is better)
Translates to: RFSCITTLINIQESWLAGIDFCI*IWRLLK
Trigger: TTTTAGCAGCCTCCATATCAAAATGCAGAAGTCAAT...TCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp TGTTCCACTTGGCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTTCCCCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCA +
Preference number: 4 (lower is better)
Translates to: CSTWQLDCAGLPEILAASPTVRD*SWCPTP
Trigger: TGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGG...GGAAGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
CDS-3UTR GCA 90 bp CACTCTCTATCACCATCCCATACATTAGATACTGCATGCCCCGTCAGTAGGAGGCCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCA +
Preference number: 4 (lower is better)
Translates to: HSLSPSHTLDTACPVSRRPTVRD*SWCPTP
Trigger: TGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGG...CCTCCTACTGACGGGGCATGCAGTATCTAATGTATGGGATGGTGATAGAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp GAATGTTCCACTTGGCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTTCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGAC +
Preference number: 4 (lower is better)
Translates to: ECSTWQLDCAGLPEILAASSGRR*CPTVRD
Trigger: GTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA...AGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
CDS-3UTR TCA 90 bp CACTCTCTATCACCATCCCATACATTAGATACTGCATGCCCCGTCAGTAGGAGGCTTCTGCTCTTCCTCTaGGCAATCCCGCCAGGACGA +
Preference number: 4 (lower is better)
Translates to: HSLSPSHTLDTACPVSRRLLLFL*AIPPGR
Trigger: TCGTCCTGGCGGGATTGCTCAGAGGAAGAGCAGAAG...CCTCCTACTGACGGGGCATGCAGTATCTAATGTATGGGATGGTGATAGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp CAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATATCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGAC +
Preference number: 4 (lower is better)
Translates to: QRLIGVSSVCSMGSSKPISSGRR*CPTVRD
Trigger: GTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA...TATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp CAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCCCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCA +
Preference number: 4 (lower is better)
Translates to: QESVLSNTVKVRIVSPQSPTVRD*SWCPTP
Trigger: TGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGG...GCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp TCGGGATCTGAAACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCAAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 4 (lower is better)
Translates to: SGSETRSKAFMTSSRRESKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...TGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp CAGCGTTTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATAAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 4 (lower is better)
Translates to: QRLIGVSSVCSMGSSKPIKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...TATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CAA 72 bp AAGCTCTTCGACAGCCAAGGCAGAAGAATGTTCCACTaGGCAACTAGACTGTGCAGGACTCCCAGAAATCCT +
Preference number: 4 (lower is better)
Translates to: KLFDSQGRRMFH*ATRLCRTPRNP
Trigger: AGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129489.8
CDS-3UTR GCA 90 bp CCAACCTTACAATATCGTAAAGCTTCCATTAGTGTTAAGAATCCTACAGCTGCTCCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCA +
Preference number: 4 (lower is better)
Translates to: PTLQYRKASISVKNPTAAPTVRD*SWCPTP
Trigger: TGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGG...AGCAGCTGTAGGATTCTTAACACTAATGGAAGCTTTACGATATTGTAAGGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp ACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCAGCTATGAATCCAAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 4 (lower is better)
Translates to: TRSKAFMTSSRRESAMNPKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...TGGATTCATAGCTGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATATCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGAC +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRISSGRR*CPTVRD
Trigger: GTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp ATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGACCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCA +
Preference number: 4 (lower is better)
Translates to: ILMHYHTYKYTRKLACRRPTVRD*SWCPTP
Trigger: TGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGG...TCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCATCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGAC +
Preference number: 4 (lower is better)
Translates to: YHTYKYTRKLACRRVYLASSGRR*CPTVRD
Trigger: GTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAATCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGAC +
Preference number: 4 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKSSGRR*CPTVRD
Trigger: GTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp AGAAGACCAAGGACAGGATTGGGAATCAGGAACTCAGTTCCAATCCCTGCTCTGAAGATTCTGGACCACTaGAGCCCTGATCAGGAAAAA +
Preference number: 4 (lower is better)
Translates to: RRPRTGLGIRNSVPIPALKILDH*SPDQEK
Trigger: TTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTT...CAGAGCAGGGATTGGAACTGAGTTCCTGATTCCCAATCCTGTCCTTGGTCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
CDS-3UTR GCA 90 bp CCATGCCCGTACACAGGGTCTATCAAAGGCTCATTTGCATCTTCAATTGAATTCCTAAACACAAACCCTTaGGTCCAGCGGCAGAAGATG +
Preference number: 4 (lower is better)
Translates to: PCPYTGSIKGSFASSIEFLNTNP*VQRQKM
Trigger: CATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAG...GAATTCAATTGAAGATGCAAATGAGCCTTTGATAGACCCTGTGTACGGGCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp ACAAGGTCCAAGGCTTTCATGACATCTTCTAGAAGGGAGTCAGCTATGAATCCACTAAACACAAACCCTTaGGTCCAGCGGCAGAAGATG +
Preference number: 4 (lower is better)
Translates to: TRSKAFMTSSRRESAMNPLNTNP*VQRQKM
Trigger: CATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAG...TGGATTCATAGCTGACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRIKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
3UTR CAA 72 bp TTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTaGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAAC +
Preference number: 4 (lower is better)
Translates to: LTIFLTNTQATQ*SEGQRSVVHSN
Trigger: GTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129489.8
ENSMUST00000135397.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR TCA 90 bp AGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGACTTCTGCTCTTCCTCTaGGCAATCCCGCCAGGACGA +
Preference number: 4 (lower is better)
Translates to: RFSCITTLINIQESWLAGLLLFL*AIPPGR
Trigger: TCGTCCTGGCGGGATTGCTCAGAGGAAGAGCAGAAG...TCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028105.13
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp AAAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGCTAAACACAAACCCTTaGGTCCAGCGGCAGAAGATG +
Preference number: 4 (lower is better)
Translates to: KANRFFPYRCKNHIPVHLLNTNP*VQRQKM
Trigger: CATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAG...CAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR TCA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCGAGAAGTTGCATTCCTaGGCACTCTCTATCACCATC +
Preference number: 4 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGEKLHS*ALSITI
Trigger: GATGGTGATAGAGAGTGCTCAGGAATGCAACTTCTC...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR GCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATACTAAACACAAACCCTTaGGTCCAGCGGCAGAAGATG +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRILNTNP*VQRQKM
Trigger: CATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAG...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp AAAAGCAAGACTCCAAATTTGTTTCCCCACATTGAATACTGGTCCAAGACAGCACTAAACACAAACCCTTaGGTCCAGCGGCAGAAGATG +
Preference number: 4 (lower is better)
Translates to: KSKTPNLFPHIEYWSKTALNTNP*VQRQKM
Trigger: CATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAG...TGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp GTAGAGATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAAACGCCTGGACAGGTaGAATAACAGCACAGGGGCC +
Preference number: 4 (lower is better)
Translates to: VEILMHYHTYKYTRKLACKRLDR*NNSTGA
Trigger: GGCCCCTGTGCTGTTATTGCACCTGTCCAGGCGTTT...GCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAATCTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp ATGAATCCCCCTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAAGGACAGCGGTCTGTaGTCCACAGTAACTCAATGT +
Preference number: 4 (lower is better)
Translates to: MNPPFNTWFDNLPYKYSGKDSGL*STVTQC
Trigger: ACATTGAGTTACTGTGGACCACAGACCGCTGTCCTT...GCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAGGGGGATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR TCA 90 bp AAAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGAAAAATACGGTGAGGTaGGTTTCGCTGCCAACAATC +
Preference number: 4 (lower is better)
Translates to: KANRFFPYRCKNHIPVHLKNTVR*VSLPTI
Trigger: GATTGTTGGCAGCGAAACTCACCTCACCGTATTTTT...CAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR TCA 90 bp TTAATAGGAGTGTCGTCTGTCTGTAGCATGGGGTCTTCAAAACCCATAACCACTATGGACCCAACAATATaGTTCCTAGTCCTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: LIGVSSVCSMGSSKPITTMDPTI*FLVLLD
Trigger: ATCCAGAAGGACTAGGAATCATATTGTTGGGTCCAT...AGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135397.8
CDS-3UTR GCA 90 bp CTTTCAACACCTGGTTTGACAATCTTCCTTACAAATACTCAGGCAACTCAGTTGTTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCT +
Preference number: 4 (lower is better)
Translates to: LSTPGLTIFLTNTQATQLLATRL*RTPRNP
Trigger: AGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAA...CAACTGAGTTGCCTGAGTATTTGTAAGGAAGATTGTCAAACCAGGTGTTGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp AAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTAAGATTCTGGACCACTaGAGCCCTGATCAGGAAAAA +
Preference number: 4 (lower is better)
Translates to: KQTDSSPIVVKTTFLCTCKILDH*SPDQEK
Trigger: TTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTT...ACAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR TCA 90 bp AAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGTATGGACCCAACAATATaGTTCCTAGTCCTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: KQTDSSPIVVKTTFLCTCMDPTI*FLVLLD
Trigger: ATCCAGAAGGACTAGGAATCATATTGTTGGGTCCAT...ACAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR GCA 90 bp TACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCATTGGCAACTAGACTGTaGAGGACTCCCAGAAATCCT +
Preference number: 4 (lower is better)
Translates to: YHTYKYTRKLACRRVYLALATRL*RTPRNP
Trigger: AGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAA...TGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028105.13
ENSMUST00000155530.8
CDS-3UTR CCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATATTTGGAAAACTCTTCTaGCTTGTTCCGAAGGCGCTT +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRIFGKLF*LVPKAL
Trigger: AAGCGCCTTCGGAACAAGCCAGAAGAGTTTTCCAAA...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR TCA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAATTTGTTTCCCCACATTaGATACTGGTCCAAGACAGC +
Preference number: 4 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKFVSPH*ILVQDS
Trigger: GCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAA...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR TCA 90 bp ATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGGTCCAAGGCTTTCATaGCATCTTCTAGAAGGGAGT +
Preference number: 4 (lower is better)
Translates to: ILMHYHTYKYTRKLACRRGPRLS*HLLEGS
Trigger: ACTCCCTTCTAGAAGATGTCATGAAAGCCTTGGACC...TCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CCA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAAGAAGAATGTTCCACTTaGCAACTAGACTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKEECST*QLDCAG
Trigger: TCCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTC...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CCA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAAAGGTTAATTAAGCTTTaGCTGCCATGCCCGTACACA +
Preference number: 4 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKRLIKL*LPCPYT
Trigger: TGTGTACGGGCATGGCAGCCAAAGCTTAATTAACCT...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAACAGCTGCTTGTTCATaGATACCGAGAAGTTGCATT +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRITAACS*IPRSCI
Trigger: AATGCAACTTCTCGGTATCCATGAACAAGCAGCTGT...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR GCA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATATATGGCCATTTGGTTTaGAGACAGCGTTTAATAGGA +
Preference number: 4 (lower is better)
Translates to: KKAGLQESVLSNTVKVRIYGHLV*RQRLIG
Trigger: TCCTATTAAACGCTGTCTGCAAACCAAATGGCCATA...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
3UTR CAA 72 bp TGCCATGCCCGTACACAGGGTCTATCAAAGGCTCATTaGCATCTTCAATTGAATTCTTTATGTTTTCAATGC +
Preference number: 4 (lower is better)
Translates to: CHARTQGLSKAH*HLQLNSLCFQC
Trigger: GCATTGAAAACATAAAGAATTCAATTGAAGATGCAAATGAGCCTTTGATAGACCCTGTGTACGGGCATGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000155530.8
CDS-3UTR GCA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATAAAAACCCATAACCACTaGAGTCCCTTCCACATACAT +
Preference number: 4 (lower is better)
Translates to: HTYKYTRKLACRRVYLAIKTHNH*SPFHIH
Trigger: ATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTT...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS CCA 90 bp GCGTCCAGCGGCAGAAGATGGTGTCCGACAGTCCGGGACTGCTCTTaGTGCCCCACACCAGCTCCAGCAGCTCTTTGGTCACTTCGGACA +
Preference number: 5 (lower is better)
Translates to: ASSGRRWCPTVRDCS*CPTPAPAALWSLRT
Trigger: TGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028105.13
ENSMUST00000124515.2
ENSMUST00000124603.8
ENSMUST00000129489.8
ENSMUST00000129993.3
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS CCA 90 bp GGAGGAATATGGCAGGGCATTTGGCTTGCGTCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGACTGCTCTTGGTGCCCCACACCAGCT +
Preference number: 5 (lower is better)
Translates to: GGIWQGIWLASSGRR*CPTVRDCSWCPTPA
Trigger: AGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGCCAAATGCCCTGCCATATTCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151529.8
CDS-3UTR CAA 90 bp ACTCAGGCAACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TQATQLSEGQRSVVHSNSSPGLL*VPHTSS
Trigger: GGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACT...TGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGTTGCCTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS CCA 90 bp CTTGTTCATGGATACCGAGAAGTTCTTGCGTCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGACTGCTCTTGGTGCCCCACACCAGCT +
Preference number: 5 (lower is better)
Translates to: LVHGYREVLASSGRR*CPTVRDCSWCPTPA
Trigger: AGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGAACTTCTCGGTATCCATGAACAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129993.3
CDS-3UTR CAA 90 bp GAATGTTCCACTTGGCAACTAGACTGTGCAGGACTCCCAGAAATCCTAGCCGCTAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: ECSTWQLDCAGLPEILAASPGLL*VPHTSS
Trigger: GGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACT...AGCGGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGAACATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129489.8
ENSMUST00000151529.8
CDS-3UTR CAA 90 bp ACTCAGTTGAGCGAAGGACAGCGGTCTGTGGTCCACAGTAACTCAATGTATGGCAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TQLSEGQRSVVHSNSMYGSPGLL*VPHTSS
Trigger: GGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACT...GCCATACATTGAGTTACTGTGGACCACAGACCGCTGTCCTTCGCTCAACTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CAA 90 bp CAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: QESVLSNTVKVRIVSPQSSPGLL*VPHTSS
Trigger: GGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACT...GCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CAA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATAAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: HTYKYTRKLACRRVYLAISPGLL*VPHTSS
Trigger: GGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACT...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028105.13
ENSMUST00000129489.8
ENSMUST00000144645.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS-3UTR CAA 90 bp CACTCTCTATCACCATCCCATACATTAGATACTGCATGCCCCGTCAGTAGGAGGTTAAGAATGTTCCACTaGGCAACTAGACTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: HSLSPSHTLDTACPVSRRLRMFH*ATRLCR
Trigger: CCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTAA...CCTCCTACTGACGGGGCATGCAGTATCTAATGTATGGGATGGTGATAGAGAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155530.8
CDS-3UTR CAA 90 bp AAAGCAAACAGATTCTTCCCCTATCGTTGTAAAAACCACATTCCTGTGCACCTGAGAAGAATGTTCCACTaGGCAACTAGACTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: KANRFFPYRCKNHIPVHLRRMFH*ATRLCR
Trigger: CCTGCACAGTCTAGTTGCCAAGTGGAACATTCTTCT...CAGGTGCACAGGAATGTGGTTTTTACAACGATAGGGGAAGAATCTGTTTGCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CAA 90 bp GAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAGTAAGCCCACAAAGCAAAGTATGGCCATTTGGTTaGCAGACAGCGTTTAATAGG +
Preference number: 5 (lower is better)
Translates to: ESVLSNTVKVRIVSPQSKVWPFG*QTAFNR
Trigger: CCTATTAAACGCTGTCTGCAAACCAAATGGCCATAC...TTTGCTTTGTGGGCTTACTATTCTCACTTTCACTGTATTGCTAAGTACACTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CAA 90 bp AAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATACAGTGAAAGTGAGAATAAGCAAGACTCCAAATTaGTTTCCCCACATTGAATAC +
Preference number: 5 (lower is better)
Translates to: KKAGLQESVLSNTVKVRISKTPN*FPHIEY
Trigger: GTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCT...TATTCTCACTTTCACTGTATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CAA 90 bp ATTCTCATGCATTACCACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGATTCCGGATCATAGGTTaGGAAAACTCTTCTGGCTTG +
Preference number: 5 (lower is better)
Translates to: ILMHYHTYKYTRKLACRRFRIIG*ENSSGL
Trigger: CAAGCCAGAAGAGTTTTCCAAACCTATGATCCGGAA...TCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTGGTAATGCATGAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS-3UTR CAA 90 bp CACACTTATAAATATACAAGAAAGCTGGCTTGCAGGAGAGTGTACTTAGCAATAATTTGTTTCCCCACATaGAATACTGGTCCAAGACAG +
Preference number: 5 (lower is better)
Translates to: HTYKYTRKLACRRVYLAIICFPT*NTGPRQ
Trigger: CTGTCTTGGACCAGTATTCAATGTGGGGAAACAAAT...TATTGCTAAGTACACTCTCCTGCAAGCCAGCTTTCTTGTATATTTATAAGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028105.13
CDS CCA 72 bp TGGCAGGGCATTTGGCTTGCGTCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGACTGCTCTTGGTGCCCC +
Preference number: 6 (lower is better)
Translates to: WQGIWLASSGRR*CPTVRDCSWCP
Trigger: GGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGCCAAATGCCCTGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151529.8
CDS GCA 72 bp TCCAGCGGCAGAAGATGGTGTCCGACAGTCCGGGACTaGTCTTGGTGCCCCACACCAGCTCCAGCAGCTCTT +
Preference number: 6 (lower is better)
Translates to: SSGRRWCPTVRD*SWCPTPAPAAL
Trigger: AAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028105.13
ENSMUST00000124515.2
ENSMUST00000124603.8
ENSMUST00000129489.8
ENSMUST00000129993.3
ENSMUST00000144645.8
ENSMUST00000151529.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS CAA 72 bp CGGCAGAAGATGGTGTCCGACAGTCCGGGACTGCTCTaGGTGCCCCACACCAGCTCCAGCAGCTCTTTGGTC +
Preference number: 6 (lower is better)
Translates to: RQKMVSDSPGLL*VPHTSSSSSLV
Trigger: GACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028105.13
ENSMUST00000124515.2
ENSMUST00000124603.8
ENSMUST00000129489.8
ENSMUST00000129993.3
ENSMUST00000144645.8
ENSMUST00000151529.8
ENSMUST00000154899.7
ENSMUST00000155530.8
CDS CCA 72 bp GGATACCGAGAAGTTCTTGCGTCCAGCGGCAGAAGATaGTGTCCGACAGTCCGGGACTGCTCTTGGTGCCCC +
Preference number: 6 (lower is better)
Translates to: GYREVLASSGRR*CPTVRDCSWCP
Trigger: GGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGAACTTCTCGGTATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129993.3
CDS GCA 72 bp ATGACCTGGAGGAGGAATATGGCAGGGCATTTGGCTTaGGTCCAGCGGCAGAAGATGGTGTCCGACAGTCCG +
Preference number: 6 (lower is better)
Translates to: MTWRRNMAGHLA*VQRQKMVSDSP
Trigger: CGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGCCAAATGCCCTGCCATATTCCTCCTCCAGGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151529.8
CDS TCA 72 bp TCCTACAGCTGCTTGTTCATGGATACCGAGAAGTTCTaGGCAATCCCGCCAGGACGACTTCTCGGAGGAGAA +
Preference number: 6 (lower is better)
Translates to: SYSCLFMDTEKF*AIPPGRLLGGE
Trigger: TTCTCCTCCGAGAAGTCGTCCTGGCGGGATTGCTCAGAACTTCTCGGTATCCATGAACAAGCAGCTGTAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124603.8