RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MINDY1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038712

Ensembl transcript IDs: ENSMUST00000039537.14, ENSMUST00000107187.9, ENSMUST00000168223.2

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTaGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGC +
Preference number: 1 (lower is better)
Translates to: QERCFPDRCLDQQAA*VHVSTGLFQERGWG
Trigger: GCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR TCA 90 bp GGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTaGTCCCCAACAGTGCATATAGGTTATTCTCTGTGTCTCAGGGAT +
Preference number: 1 (lower is better)
Translates to: GKDGTKSDLGTYCLF*SPTVHIGYSLCLRD
Trigger: ATCCCTGAGACACAGAGAATAACCTATATGCACTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR TCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGCTGCAAGTCACAGCCTaGGCTGGCTGTAGGGGGCAG +
Preference number: 2 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVLQVTA*AGCRGQ
Trigger: CTGCCCCCTACAGCCAGCTCAGGCTGTGACTTGCAG...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR GCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATGGGGTGGGATCCTaGAAGTCACAGCCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRDGVGS*KSQPEL
Trigger: CAGCTCAGGCTGTGACTTGCAGGATCCCACCCCATC...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGACCACCCACACCTATGTaGCCTTGGAAGAGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRPPTPM*PWKRGR
Trigger: TCTTCCTCTCTTCCAAGGCCACATAGGTGTGGGTGG...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR TCA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCCTGCAAGTCACAGCCTaGGCTGGCTGTAGGGGGCAG +
Preference number: 2 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTLQVTA*AGCRGQ
Trigger: CTGCCCCCTACAGCCAGCTCAGGCTGTGACTTGCAG...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR TCA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGCTGCAAGTCACAGCCTaGGCTGGCTGTAGGGGGCAG +
Preference number: 2 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQLQVTA*AGCRGQ
Trigger: CTGCCCCCTACAGCCAGCTCAGGCTGTGACTTGCAG...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR TCA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCAAGATGGTACCAAGTCTaGCCTTGGCACCTATTGTCT +
Preference number: 2 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGARWYQV*PWHLLS
Trigger: AGACAATAGGTGCCAAGGTCAGACTTGGTACCATCT...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR GCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCGATGGGGTGGGATCCTaGAAGTCACAGCCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSDGVGS*KSQPEL
Trigger: CAGCTCAGGCTGTGACTTGCAGGATCCCACCCCATC...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCCACCCACACCTATGTaGCCTTGGAAGAGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDPPTPM*PWKRGR
Trigger: TCTTCCTCTCTTCCAAGGCCACATAGGTGTGGGTGG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR CAA 90 bp GCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTaGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCC +
Preference number: 2 (lower is better)
Translates to: ANRQGHKRDAFQIGV*TSKQPGSMYPRDYS
Trigger: GGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR GCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACGATGGGGTGGGATCCTaGAAGTCACAGCCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDDGVGS*KSQPEL
Trigger: CAGCTCAGGCTGTGACTTGCAGGATCCCACCCCATC...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTCCACCCACACCTATGTaGCCTTGGAAGAGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPPPTPM*PWKRGR
Trigger: TCTTCCTCTCTTCCAAGGCCACATAGGTGTGGGTGG...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACTTCCAGGAAAGGGGGTaGGGCACCAGAGATTTTCAC +
Preference number: 2 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDFQERG*GTRDFH
Trigger: GTGAAAATCTCTGGTGCCCCACCCCCTTTCCTGGAA...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR TCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTAGATGGTACCAAGTCTaGCCTTGGCACCTATTGTCT +
Preference number: 2 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLRWYQV*PWHLLS
Trigger: AGACAATAGGTGCCAAGGTCAGACTTGGTACCATCT...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGTCTGTGTCTCAGGGATaGAGATGGGGTGGGATCCTG +
Preference number: 3 (lower is better)
Translates to: DGRVCGVAQEQTGRDTRESVSQG*RWGGIL
Trigger: CAGGATCCCACCCCATCTCAATCCCTGAGACACAGA...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGTTCCAGATAGGTGTCTaGACCAGCAAGCAGCCTGGG +
Preference number: 3 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQFQIGV*TSKQPG
Trigger: CCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGCACACCTATGTGGCCTaGGAAGAGAGGAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVHTYVA*EERKRR
Trigger: TCTTCTCTTCCTCTCTTCCAAGGCCACATAGGTGTG...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR CCA 72 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTaGGGCACCAGAGATTTTCACCCACCCACACCTATG +
Preference number: 3 (lower is better)
Translates to: VHVSTGLFQERG*GTRDFHPPTPM
Trigger: CATAGGTGTGGGTGGGTGAAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAGTACCAAGTCTGACCTaGGCACCTATTGTCTGTTCT +
Preference number: 3 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRVPSLT*APIVCS
Trigger: AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTAC...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGCACACCTATGTGGCCTaGGAAGAGAGGAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQHTYVA*EERKRR
Trigger: TCTTCTCTTCCTCTCTTCCAAGGCCACATAGGTGTG...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCTCTGTGTCTCAGGGATaGAGATGGGGTGGGATCCTG +
Preference number: 3 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSSVSQG*RWGGIL
Trigger: CAGGATCCCACCCCATCTCAATCCCTGAGACACAGA...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR CCA 72 bp TGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTaGGTCCATGTATCCACGGGACTATTCCAGGAAAGG +
Preference number: 3 (lower is better)
Translates to: CFPDRCLDQQAA*VHVSTGLFQER
Trigger: CCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACGTACCAAGTCTGACCTaGGCACCTATTGTCTGTTCT +
Preference number: 3 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDVPSLT*APIVCS
Trigger: AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTAC...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGTCTGTGTCTCAGGGATaGAGATGGGGTGGGATCCTG +
Preference number: 3 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQSVSQG*RWGGIL
Trigger: CAGGATCCCACCCCATCTCAATCCCTGAGACACAGA...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR-3UTR CAA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCACACCTATGTGGCCTaGGAAGAGAGGAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKHTYVA*EERKRR
Trigger: TCTTCTCTTCCTCTCTTCCAAGGCCACATAGGTGTG...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR TCA 72 bp AAGATAGCAGTACAAGGGCAAAGATGGTACCAAGTCTaGCCTTGGCACCTATTGTCTGTTCTGATCCCCAAC +
Preference number: 3 (lower is better)
Translates to: KIAVQGQRWYQV*PWHLLSVLIPN
Trigger: GTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACTGCTATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR TCA 72 bp GGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTaGTCCCCAACAGTGCATATAGGTTATTCTCTGTGT +
Preference number: 3 (lower is better)
Translates to: GTKSDLGTYCLF*SPTVHIGYSLC
Trigger: ACACAGAGAATAACCTATATGCACTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGATCTTCCGTGGCAGCTaGTGTGAGCTCGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: DGRVCGVAQEQTGRDTREIFRGS*CELAQA
Trigger: GGCCTGTGCGAGCTCACAGCAGCTGCCACGGAAGAT...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGCTGGGGAAGTTCCTGTaGCCTGGAACACACCTCTGC +
Preference number: 4 (lower is better)
Translates to: DGRVCGVAQEQTGRDTRELGKFL*PGTHLC
Trigger: GCAGAGGTGTGTTCCAGGCCACAGGAACTTCCCCAG...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGCCGCCGCTCTCCAGCTaGACGTCCAGATGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQPPLSS*TSRCGS
Trigger: GGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGG...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp GCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGTGTCTCTACCTTAGGTaGCGTCCCACAAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ASSLGPCIHGTIPGKGVGCLYLR*RPTSWP
Trigger: GGGCCAGCTTGTGGGACGTCACCTAAGGTAGAGACA...CCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGATGGTCCACTTGCAGCTaGTTCTCTGGAGAGCCACCC +
Preference number: 4 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRWSTCS*FSGEPP
Trigger: GGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCA...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCATGGATCCTGGGGGACTaGGGAAGTTCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGAWILGD*GSSCGL
Trigger: CAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCA...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGAGCCTCGGGACTCTGTaGATCCACCAGCCAGCCATG +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVSLGTL*IHQPAM
Trigger: CATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCT...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCAGGCTGCTGCTGCTGCTaGTCCACTTGCAGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGAGCCCC*STCSCF
Trigger: GAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCC...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCCGCCGCTCTCCAGCTaGACGTCCAGATGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDPPLSS*TSRCGS
Trigger: GGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGGGAGCTCATCTGATGTaGTCACTTCCTTCTGAGGGG +
Preference number: 4 (lower is better)
Translates to: DGRVCGVAQEQTGRDTREGAHLM*SLPSEG
Trigger: CCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCC...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGTGCCTTGTGGCTGCTaGTGCTGCTGGTCCACTTGC +
Preference number: 4 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQVPCGC*CCWSTC
Trigger: GCAAGTGGACCAGCAGCAGCAGCAGCCACAAGGCAC...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGTCAACTGTGCCGCAGTaGTCTCCAGGAACTGCTCCG +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVSTVPQ*SPGTAP
Trigger: CGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGA...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGTTGCAGCTGCTTCTCTaGAGAGCCACCCCCACCTTC +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVLQLLL*RATPTF
Trigger: GAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAA...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACGCCCAACGTGCCTTGTaGCTGCTGCTGCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDAQRAL*LLLLLV
Trigger: GACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGC...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGCCGCCGCTCTCCAGCTaGACGTCCAGATGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLPPLSS*TSRCGS
Trigger: GGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGG...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAGTGGTCTCCAGGAACTaGTCCGCAACCAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRVVSRN*SATKPS
Trigger: AGAAGGCTTGGTTGCGGAGCAGTTCCTGGAGACCAC...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACATCTTCCGTGGCAGCTaGTGTGAGCTCGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDIFRGS*CELAQA
Trigger: GGCCTGTGCGAGCTCACAGCAGCTGCCACGGAAGAT...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGCTCTCCCATACCACCTaGTCCTCCTGTAGAAAACCT +
Preference number: 4 (lower is better)
Translates to: DGRVCGVAQEQTGRDTRELSHTT*SSCRKP
Trigger: AGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAG...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGCTGGTGGCAAAGTTTaGTCTCCTGGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRAGGKV*SPGSCS
Trigger: AGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGC...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGACCATCCTGGGCTGGTaGCAAAGTTTGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVTILGW*QSLVSW
Trigger: CCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGT...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAAGTTCCTGTGGCCTaGAACACACCTCTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: AWVHVSTGLFQERGWGTREVPVA*NTPLLS
Trigger: AGACAGCAGAGGTGTGTTCCAGGCCACAGGAACTTC...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACAGCCTCGGGACTCTGTaGATCCACCAGCCAGCCATG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDSLGTL*IHQPAM
Trigger: CATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCT...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAGGAGCTCATCTGATGTaGTCACTTCCTTCTGAGGGG +
Preference number: 4 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRGAHLM*SLPSEG
Trigger: CCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCC...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTGGTCCACTTGCAGCTaGTTCTCTGGAGAGCCACCC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDWSTCS*FSGEPP
Trigger: GGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCA...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGCCTTGTGGCTGCTGCTaGTGCTGGTCCACTTGCAGC +
Preference number: 4 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLPCGCC*CWSTCS
Trigger: GCTGCAAGTGGACCAGCAGCAGCAGCAGCCACAAGG...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGACAAAGTTTGGTCTCCTaGCTCCTGTTCTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRQSLVS*LLFSSC
Trigger: GCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTG...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGACCATCCTGGGCTGGTaGCAAAGTTTGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQTILGW*QSLVSW
Trigger: CCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGT...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAACTTCTCTTGGGGTTTaGTGGACAGAAGGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRTSLGV*WTEGSF
Trigger: GAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGT...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGAAAACCTTGGTCAGTaGCCAGTAGGTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVENLGQ*PVGTGD
Trigger: GTCACCTGTACCTACTGGTCACTGACCAAGGTTTTC...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGACCAGCAAGTCAAAGATaGTGCATTCCGGCGTATACT +
Preference number: 4 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRPASQR*CIPAYT
Trigger: AGTATACGCCGGAATGCAGCATCTTTGACTTGCTGG...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGCTCTCCCATACCACCTaGTCCTCCTGTAGAAAACCT +
Preference number: 4 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVLSHTT*SSCRKP
Trigger: AGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAG...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTGGTCCACTTGCAGCTaGTTCTCTGGAGAGCCACCC +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSWSTCS*FSGEPP
Trigger: GGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCA...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTCCTTGTGGCTGCTGCTaGTGCTGGTCCACTTGCAGC +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLPCGCC*CWSTCS
Trigger: GCTGCAAGTGGACCAGCAGCAGCAGCAGCCACAAGG...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACGGCTGCTGCTGCTGCTaGAGGGATAAGGCAATAAGG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDGCCCC*RDKAIR
Trigger: CCTTATTGCCTTATCCCTGCAGCAGCAGCAGCAGCC...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107187.9
CDS-3UTR CCA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGAAGTTCCTGTGGCCTaGAACACACCTCTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQEVPVA*NTPLLS
Trigger: AGACAGCAGAGGTGTGTTCCAGGCCACAGGAACTTC...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCTGGATCCTGGGGGACTaGGGAAGTTCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSWILGD*GSSCGL
Trigger: CAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCA...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTCTAGCTCAGGCTGTTaGATCCTGGGGGACTGGGGA +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSSSSGC*ILGDWG
Trigger: TCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGA...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCAGCCTCGGGACTCTGTaGATCCACCAGCCAGCCATG +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSSLGTL*IHQPAM
Trigger: CATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCT...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACGCCCAACGTGCCTTGTaGCTGCTGCTGCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDAQRAL*LLLLLV
Trigger: GACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGC...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTGCTGCTGGTCCACTTaGAGCTGCTTCTCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSCCWST*SCFSGE
Trigger: CTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCA...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACGTGCCTTGTGGCTGCTaGTGCTGCTGGTCCACTTGC +
Preference number: 4 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDVPCGC*CCWSTC
Trigger: GCAAGTGGACCAGCAGCAGCAGCAGCCACAAGGCAC...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCGTGCCTTGTGGCTGCTaGTGCTGCTGCAGGGATAAG +
Preference number: 4 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTVPCGC*CCCRDK
Trigger: CTTATCCCTGCAGCAGCAGCAGCAGCCACAAGGCAC...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107187.9
CDS-3UTR GCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTAACGTGCCTTGTGGCTaGTGCTGCTGCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPNVPCG*CCCCRD
Trigger: ATCCCTGCAGCAGCAGCAGCAGCCACAAGGCACGTT...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107187.9
CDS-3UTR CCA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCCTGGGGAAGTTCCTGTaGCCTGGAACACACCTCTGC +
Preference number: 4 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTLGKFL*PGTHLC
Trigger: GCAGAGGTGTGTTCCAGGCCACAGGAACTTCCCCAG...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTCTGGGGAAGTTCCTGTaGCCTGGAACACACCTCTGC +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLLGKFL*PGTHLC
Trigger: GCAGAGGTGTGTTCCAGGCCACAGGAACTTCCCCAG...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTCCACCAGCCAGCCATaGTATAGAGGTATTCCCAGC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDSTSQP*YRGIPS
Trigger: GCTGGGAATACCTCTATACCATGGCTGGCTGGTGGA...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCTCAACTGTGCCGCAGTaGTCTCCAGGAACTGCTCCG +
Preference number: 4 (lower is better)
Translates to: TQERCFPDRCLDQQAAWVSTVPQ*SPGTAP
Trigger: CGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGA...GACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
3UTR CAA 72 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTaGACCAGCAAGCAGCCTGGGTCCATGTATCCACGG +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGV*TSKQPGSMYPR
Trigger: CCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGCACCATCCTTGTCCTaGGGATGCTTCTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPAPSLS*GCFSGP
Trigger: TGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGC...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGTGTCTCTACCTTAGGTaGCGTCCCACAAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKCLYLR*RPTSWP
Trigger: GGGCCAGCTTGTGGGACGTCACCTAAGGTAGAGACA...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACGAAAACCTTGGTCAGTaGCCAGTAGGTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDENLGQ*PVGTGD
Trigger: GTCACCTGTACCTACTGGTCACTGACCAAGGTTTTC...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCCTCCTGTTCTCCAGCTaGTCCATCAGCATCTGCACC +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSLLFSS*SISICT
Trigger: GGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGAG...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp ACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTCCTGTTCTCCAGCTaGTCCATCAGCATCTGCACC +
Preference number: 4 (lower is better)
Translates to: TQERCFPDRCLDQQAAWVLLFSS*SISICT
Trigger: GGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGAG...GACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCGTGGTCTCCAGGAACTaGTCCGCAACCAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSVVSRN*SATKPS
Trigger: AGAAGGCTTGGTTGCGGAGCAGTTCCTGGAGACCAC...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCTCTCCCATACCACCTaGTCCTCCTGTAGAAAACCT +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDLSHTT*SSCRKP
Trigger: AGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGTTCACCATCCTGGGCTaGTGGCAAAGTTTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLFTILG*WQSLVS
Trigger: GGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAA...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGTCTAGCTCAGGCTGTTaGATCCTGGGGGACTGGGGA +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKSSSGC*ILGDWG
Trigger: TCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGA...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCCCTCAGACTTCTCTTaGGGTTTGATGGACAGAAGG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDPSDFS*GLMDRR
Trigger: CCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCATCCTGTAGAAAACCTTaGTCAGTGACCAGTAGGTAC +
Preference number: 4 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGASCRKP*SVTSRY
Trigger: GTACCTACTGGTCACTGACCAAGGTTTTCTACAGGA...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGTTGCAGCTGCTTCTCTaGAGAGCCACCCCCACCTTC +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKLQLLL*RATPTF
Trigger: GAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAA...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGGCACCATCCTTGTCCTaGGGATGCTTCTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKAPSLS*GCFSGP
Trigger: TGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGC...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp ACCCTAAAACAAAGACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGAAAAAGGATGTTCATaGTGGCTAGAAGAGGACACG +
Preference number: 4 (lower is better)
Translates to: TLKQRRQGLWGSPGANRQEKGCS*WLEEDT
Trigger: CGTGTCCTCTTCTAGCCATCATGAACATCCTTTTTC...CTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTCTTTGTTTTAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGAGCTCATCTGATGTaGTCACTTCCTTCTGAGGGG +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPGAHLM*SLPSEG
Trigger: CCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCC...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTGTCAGGAGCTCATCTaGTGTGATCACTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDCQELI*CDHFLL
Trigger: CAGAAGGAAGTGATCACATCAGATGAGCTCCTGACA...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGGTGGTCTCCAGGAACTaGTCCGCAACCAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKVVSRN*SATKPS
Trigger: AGAAGGCTTGGTTGCGGAGCAGTTCCTGGAGACCAC...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCATGGTAGGTCAACTGTaGCGCAGTGGTCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSMVGQL*RSGLQE
Trigger: TTCCTGGAGACCACTGCGGCACAGTTGACCTACCAT...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTATGGTAGGTCAACTGTaGCGCAGTGGTCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLMVGQL*RSGLQE
Trigger: TTCCTGGAGACCACTGCGGCACAGTTGACCTACCAT...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTATCTTCCGTGGCAGCTaGTGTGAGCTCGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSIFRGS*CELAQA
Trigger: GGCCTGTGCGAGCTCACAGCAGCTGCCACGGAAGAT...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp ACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCTGTGGCTGCTGCTGCTaGTGCAGGGATAAGGCAATA +
Preference number: 4 (lower is better)
Translates to: TQERCFPDRCLDQQAAWVCGCCC*CRDKAI
Trigger: TATTGCCTTATCCCTGCAGCAGCAGCAGCAGCCACA...GACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107187.9
CDS-3UTR CCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGACCATCCTGGGCTGGTaGCAAAGTTTGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKTILGW*QSLVSW
Trigger: CCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGT...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGAAGTTCCTGTGGCCTaGAACACACCTCTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLEVPVA*NTPLLS
Trigger: AGACAGCAGAGGTGTGTTCCAGGCCACAGGAACTTC...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTGGATCCTGGGGGACTaGGGAAGTTCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSWILGD*GSSCGL
Trigger: CAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCCCCTCAGACTTCTCTTaGGGTTTGATGGACAGAAGG +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSPSDFS*GLMDRR
Trigger: CCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGG...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCTCCACCAGCCAGCCATaGTATAGAGGTATTCCCAGC +
Preference number: 4 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTSTSQP*YRGIPS
Trigger: GCTGGGAATACCTCTATACCATGGCTGGCTGGTGGA...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTTCCACCAGCCAGCCATaGTATAGAGGTATTCCCAGC +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLSTSQP*YRGIPS
Trigger: GCTGGGAATACCTCTATACCATGGCTGGCTGGTGGA...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGGCTGCTGCTGCTGCTaGTCCACTTGCAGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSGCCCC*STCSCF
Trigger: GAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCC...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGGCACCATCCTTGTCCTaGGGATGCTTCTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQAPSLS*GCFSGP
Trigger: TGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGC...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATTTTTCCAGGGGATCCACTTaGCACAGTAGAAATCTAGCT +
Preference number: 4 (lower is better)
Translates to: VHVSTGLFQERGWGTRDFSRGST*HSRNLA
Trigger: AGCTAGATTTCTACTGTGTCAAGTGGATCCCCTGGA...AAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACGAAAAAGGATGTTCATaGTGGCTAGAAGAGGACACG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDEKGCS*WLEEDT
Trigger: CGTGTCCTCTTCTAGCCATCATGAACATCCTTTTTC...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTGTCAGGAGCTCATCTaGTGTGATCACTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSCQELI*CDHFLL
Trigger: CAGAAGGAAGTGATCACATCAGATGAGCTCCTGACA...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCACTTCTCTTGGGGTTTaGTGGACAGAAGGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSTSLGV*WTEGSF
Trigger: GAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGT...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCGAAAACCTTGGTCAGTaGCCAGTAGGTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTENLGQ*PVGTGD
Trigger: GTCACCTGTACCTACTGGTCACTGACCAAGGTTTTC...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAACTCCTGTTCTCCAGCTaGTCCATCAGCATCTGCACC +
Preference number: 4 (lower is better)
Translates to: KQAGTQERCFPDRCLDQQLLFSS*SISICT
Trigger: GGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGAG...TTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGCGGGAGCACCGTCATTaGATCGTCCACATTCTGCTG +
Preference number: 4 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQREHRH*IVHILL
Trigger: CAGCAGAATGTGGACGATGCAATGACGGTGCTCCCG...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGCCAGCAAGTCAAAGATaGTGCATTCCGGCGTATACT +
Preference number: 4 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLPASQR*CIPAYT
Trigger: AGTATACGCCGGAATGCAGCATCTTTGACTTGCTGG...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCCAGACAGGGCCTCATaGTTTTCAGATTCAACAGTT +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDPDRAS*FSDSTV
Trigger: AACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACGCTGGTGGCAAAGTTTaGTCTCCTGGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDAGGKV*SPGSCS
Trigger: AGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGC...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGTTCACCATCCTGGGCTaGTGGCAAAGTTTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKFTILG*WQSLVS
Trigger: GGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAA...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACTTCACCATCCTGGGCTaGTGGCAAAGTTTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDFTILG*WQSLVS
Trigger: GGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAA...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTCTAGCTCAGGCTGTTaGATCCTGGGGGACTGGGGA +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSSSSGC*ILGDWG
Trigger: TCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp ACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCCCTCAGACTTCTCTTaGGGTTTGATGGACAGAAGG +
Preference number: 4 (lower is better)
Translates to: TQERCFPDRCLDQQAAWVPSDFS*GLMDRR
Trigger: CCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGG...GACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTCAACTGTGCCGCAGTaGTCTCCAGGAACTGCTCCG +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSSTVPQ*SPGTAP
Trigger: CGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTTGCAGCTGCTTCTCTaGAGAGCCACCCCCACCTTC +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSLQLLL*RATPTF
Trigger: GAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACAGCTTCACCTTCCACTaGAGAAAAAGGATGTTCATG +
Preference number: 4 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDSFTFH*RKRMFM
Trigger: CATGAACATCCTTTTTCTTCAGTGGAAGGTGAAGCT...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTACTTCTCTTGGGGTTTaGTGGACAGAAGGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPTSLGV*WTEGSF
Trigger: GAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGT...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTCGGGAGCACCGTCATTaGATCGTCCACATTCTGCTG +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSREHRH*IVHILL
Trigger: CAGCAGAATGTGGACGATGCAATGACGGTGCTCCCG...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTCCAGCAAGTCAAAGATaGTGCATTCCGGCGTATACT +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLPASQR*CIPAYT
Trigger: AGTATACGCCGGAATGCAGCATCTTTGACTTGCTGG...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGATGGTAGGTCAACTGTaGCGCAGTGGTCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQMVGQL*RSGLQE
Trigger: TTCCTGGAGACCACTGCGGCACAGTTGACCTACCAT...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR GCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTGCTGCTGGTCCACTTaGAGCTGCTTCTCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSCCWST*SCFSGE
Trigger: CTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATTTTCCAGACAGGGCCTCATaGTTTTCAGATTCAACAGTT +
Preference number: 4 (lower is better)
Translates to: VHVSTGLFQERGWGTRDFPDRAS*FSDSTV
Trigger: AACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGG...AAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAACAAAGTTTGGTCTCCTaGCTCCTGTTCTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: KQAGTQERCFPDRCLDQQQSLVS*LLFSSC
Trigger: GCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTG...TTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGAGCTTCACCTTCCACTaGAGAAAAAGGATGTTCATG +
Preference number: 4 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLSFTFH*RKRMFM
Trigger: CATGAACATCCTTTTTCTTCAGTGGAAGGTGAAGCT...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGTGTCAGGAGCTCATCTaGTGTGATCACTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKCQELI*CDHFLL
Trigger: CAGAAGGAAGTGATCACATCAGATGAGCTCCTGACA...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTCCAGACAGGGCCTCATaGTTTTCAGATTCAACAGTT +
Preference number: 4 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPPDRAS*FSDSTV
Trigger: AACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGG...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGCTGGTGGCAAAGTTTaGTCTCCTGGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSAGGKV*SPGSCS
Trigger: AGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGC...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCTCCTGTAGAAAACCTTaGTCAGTGACCAGTAGGTAC +
Preference number: 4 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSSCRKP*SVTSRY
Trigger: GTACCTACTGGTCACTGACCAAGGTTTTCTACAGGA...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CCA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTTCCTGTAGAAAACCTTaGTCAGTGACCAGTAGGTAC +
Preference number: 4 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLSCRKP*SVTSRY
Trigger: GTACCTACTGGTCACTGACCAAGGTTTTCTACAGGA...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGTCCAGGGGATCCACTTaGCACAGTAGAAATCTAGCT +
Preference number: 4 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQSRGST*HSRNLA
Trigger: AGCTAGATTTCTACTGTGTCAAGTGGATCCCCTGGA...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAATCCAGGGGATCCACTTaGCACAGTAGAAATCTAGCT +
Preference number: 4 (lower is better)
Translates to: KQAGTQERCFPDRCLDQQSRGST*HSRNLA
Trigger: AGCTAGATTTCTACTGTGTCAAGTGGATCCCCTGGA...TTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR TCA 90 bp AAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGAAAAAGGATGTTCATaGTGGCTAGAAGAGGACACG +
Preference number: 4 (lower is better)
Translates to: KQAGTQERCFPDRCLDQQEKGCS*WLEEDT
Trigger: CGTGTCCTCTTCTAGCCATCATGAACATCCTTTTTC...TTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 90 bp CAGTCTTTGACCTCTGCCGCCGCTCTCCAGCTGGACGTCCAGATGTaGCTCCTCTCCCCTGGGGCGAAGGAGCCCTTGTTCGCACAGGTT +
Preference number: 5 (lower is better)
Translates to: QSLTSAAALQLDVQM*LLSPGAKEPLFAQV
Trigger: AACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGGCAGAGGTCAAAGACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAGGCCCAACGTGCCTaGTGGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: AWVHVSTGLFQERGWGTREAQRA*WLLLLL
Trigger: CAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTC...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp AGTTCCAGGTCACTGAGGCCCAACGTGCCTTGTGGCTGCTGCTGCTaGTGGTCCACTTGCAGCTGCTTCTCTGGAGAGCCACCCCCACCT +
Preference number: 5 (lower is better)
Translates to: SSRSLRPNVPCGCCC*WSTCSCFSGEPPPP
Trigger: AGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS GCA 90 bp CGTGGCAGCTGCTGTGAGCTCGCACAGGCCATGGTAGGTCAACTGTaGCGCAGTGGTCTCCAGGAACTGCTCCGCAACCAAGCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: RGSCCELAQAMVGQL*RSGLQELLRNQAFC
Trigger: ACAGAAGGCTTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGCTCACAGCAGCTGCCACG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp TGTTGGGCCAGTTCCAGGTCACTGAGGCCCAACGTGCCTTGTGGCTaGTGCTGCTGCTGGTCCACTTGCAGCTGCTTCTCTGGAGAGCCA +
Preference number: 5 (lower is better)
Translates to: CWASSRSLRPNVPCG*CCCWSTCSCFSGEP
Trigger: TGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGCCCGTGAATCGCACATaGACGTCCAGACCTGTGGCC +
Preference number: 5 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVPVNRT*TSRPVA
Trigger: GGCCACAGGTCTGGACGTCAATGTGCGATTCACGGG...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGGCCCTCAGACTTCTCTaGGGGTTTGATGGACAGAAG +
Preference number: 5 (lower is better)
Translates to: DGRVCGVAQEQTGRDTREALRLL*GFDGQK
Trigger: CTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGC...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGATCGGGAGCACCGTCATaGCATCGTCCACATTCTGCT +
Preference number: 5 (lower is better)
Translates to: AWVHVSTGLFQERGWGTRSGAPS*HRPHSA
Trigger: AGCAGAATGTGGACGATGCAATGACGGTGCTCCCGA...TCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGTCGGGAGCACCGTCATaGCATCGTCCACATTCTGCT +
Preference number: 5 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVSGAPS*HRPHSA
Trigger: AGCAGAATGTGGACGATGCAATGACGGTGCTCCCGA...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCATCGGGAGCACCGTCATaGCATCGTCCACATTCTGCT +
Preference number: 5 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGASGAPS*HRPHSA
Trigger: AGCAGAATGTGGACGATGCAATGACGGTGCTCCCGA...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCGAGGCCCAACGTGCCTaGTGGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSEAQRA*WLLLLL
Trigger: CAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTC...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CCCAGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGAGGCCCAACGTGCCTaGTGGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PRSKQAGTQERCFPDRCLEAQRA*WLLLLL
Trigger: CAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTC...AAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp AGTTTGGTCTCCTGGCTCCTGTTCTCCAGCTGCTCCATCAGCATCTaGACCATCCTTGTCCTGAGGATGCTTCTCTGGTCCAGACAGGGC +
Preference number: 5 (lower is better)
Translates to: SLVSWLLFSSCSISI*TILVLRMLLWSRQG
Trigger: GCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCCCCGTGAATCGCACATaGACGTCCAGACCTGTGGCC +
Preference number: 5 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSPVNRT*TSRPVA
Trigger: GGCCACAGGTCTGGACGTCAATGTGCGATTCACGGG...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 90 bp GCTAGCTTCAGGAGGAGGACACTCAAGATTTTCACCATCCTGGGCTaGTGGCAAAGTTTGGTCTCCTGGCTCCTGTTCTCCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: ASFRRRTLKIFTILG*WQSLVSWLLFSSCS
Trigger: GGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCTCCTGAAGCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 90 bp ACAGCACTCACAGCCTCGGGACTCTGTGGATCCACCAGCCAGCCATaGTATAGAGGTATTCCCAGCAAGTCAAAGATGCTGCATTCCGGC +
Preference number: 5 (lower is better)
Translates to: TALTASGLCGSTSQP*YRGIPSKSKMLHSG
Trigger: GCCGGAATGCAGCATCTTTGACTTGCTGGGAATACCTCTATACCATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCTGTGAGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCTGCTGAAAGTTAAGTaGAAGGCCCTCAGACTTCTC +
Preference number: 5 (lower is better)
Translates to: ASSLGPCIHGTIPGKGVGLLKVK*KALRLL
Trigger: GAGAAGTCTGAGGGCCTTCAACTTAACTTTCAGCAG...CCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTCCCGTGAATCGCACATaGACGTCCAGACCTGTGGCC +
Preference number: 5 (lower is better)
Translates to: QGHKRDAFQIGVLTSKQPPVNRT*TSRPVA
Trigger: GGCCACAGGTCTGGACGTCAATGTGCGATTCACGGG...AGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACTCTTCTTGTTGAAGTaGTTGGGCCAGTTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGALFLLK*LGQFQV
Trigger: GACCTGGAACTGGCCCAACAACTTCAACAAGAAGAG...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGCACAGGTTGAACTGCTaGCTGTTGTTGATACTCTTC +
Preference number: 5 (lower is better)
Translates to: DGRVCGVAQEQTGRDTREHRLNC*LLLILF
Trigger: GAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTG...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCAGTCTGACTCAGTCTTaGACCTCTGCCGCCGCTCTC +
Preference number: 5 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSSLTQS*TSAAAL
Trigger: GAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACT...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATTTTAGTCTGACTCAGTCTTaGACCTCTGCCGCCGCTCTC +
Preference number: 5 (lower is better)
Translates to: VHVSTGLFQERGWGTRDFSLTQS*TSAAAL
Trigger: GAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACT...AAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 90 bp GTTGATACTCTTCTTGTTGAAGTTGTTGGGCCAGTTCCAGGTCACTaGGGCCCAACGTGCCTTGTGGCTGCTGCTGCTGCTGGTCCACTT +
Preference number: 5 (lower is better)
Translates to: VDTLLVEVVGPVPGH*GPTCLVAAAAAGPL
Trigger: AAGTGGACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS CCA 90 bp AGCTTCAGGAGGAGGACACTCAAGATTTTCACCATCCTGGGCTGGTaGCAAAGTTTGGTCTCCTGGCTCCTGTTCTCCAGCTGCTCCATC +
Preference number: 5 (lower is better)
Translates to: SFRRRTLKIFTILGW*QSLVSWLLFSSCSI
Trigger: GATGGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCTCCTGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGAGACTTCTCTTGGGGTTaGATGGACAGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRDFSWG*MDRRQF
Trigger: AAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTC...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGTTGATACTCTTCTTGTaGAAGTTGTTGGGCCAGTTC +
Preference number: 5 (lower is better)
Translates to: DGRVCGVAQEQTGRDTRELILFL*KLLGQF
Trigger: GAACTGGCCCAACAACTTCAACAAGAAGAGTATCAA...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GACGGCAGGGTCTGTGGGGTAGCCCAGGAGCAAACAGGCAGGGACACAAGAGAGTTGTTGATACTCTTCTaGTTGAAGTTGTTGGGCCAG +
Preference number: 5 (lower is better)
Translates to: DGRVCGVAQEQTGRDTRELLILF*LKLLGQ
Trigger: CTGGCCCAACAACTTCAACAAGAAGAGTATCAACAA...CTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGACCCTGCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 90 bp TCCTGTTCTCCAGCTGCTCCATCAGCATCTGCACCATCCTTGTCCTaGGGATGCTTCTCTGGTCCAGACAGGGCCTCATGGTTTTCAGAT +
Preference number: 5 (lower is better)
Translates to: SCSPAAPSASAPSLS*GCFSGPDRASWFSD
Trigger: ATCTGAAAACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp GTGGTTGTTTCGAAAGAAGACACTAAGTTCATCTTCCGTGGCAGCTaGTGTGAGCTCGCACAGGCCATGGTAGGTCAACTGTGCCGCAGT +
Preference number: 5 (lower is better)
Translates to: VVVSKEDTKFIFRGS*CELAQAMVGQLCRS
Trigger: ACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGCTCACAGCAGCTGCCACGGAAGATGAACTTAGTGTCTTCTTTCGAAACAACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp TCCTCTCCCCTGGGGCGAAGGAGCCCTTGTTCGCACAGGTTGAACTaGTTGCTGTTGTTGATACTCTTCTTGTTGAAGTTGTTGGGCCAG +
Preference number: 5 (lower is better)
Translates to: SSPLGRRSPCSHRLN*LLLLILFLLKLLGQ
Trigger: CTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 90 bp CTCAAGATTTTCACCATCCTGGGCTGGTGGCAAAGTTTGGTCTCCTaGCTCCTGTTCTCCAGCTGCTCCATCAGCATCTGCACCATCCTT +
Preference number: 5 (lower is better)
Translates to: LKIFTILGWWQSLVS*LLFSSCSISICTIL
Trigger: AAGGATGGTGCAGATGCTGATGGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGACACAGGTTGAACTGCTaGCTGTTGTTGATACTCTTC +
Preference number: 5 (lower is better)
Translates to: LGPCIHGTIPGKGVGHQRHRLNC*LLLILF
Trigger: GAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTG...TCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp CTCTGGTCCAGACAGGGCCTCATGGTTTTCAGATTCAACAGTTTCTaGACTAGTGGCCTTACTAGGGGCTGGGTTCTCAGTCTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: LWSRQGLMVFRFNSF*TSGLTRGWVLSLRL
Trigger: CAACCTCAGACTGAGAACCCAGCCCCTAGTAAGGCCACTAGTGCAGAAACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGGACCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp CACATTGACGTCCAGACCTGTGGCCAGTTTCGGGAGCACCGTCATTaGATCGTCCACATTCTGCTGAAAGTTAAGTTGAAGGCCCTCAGA +
Preference number: 5 (lower is better)
Translates to: HIDVQTCGQFREHRH*IVHILLKVKLKALR
Trigger: TCTGAGGGCCTTCAACTTAACTTTCAGCAGAATGTGGACGATGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGACGTCAATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 90 bp AGGTGGAAGTCCGAGTCACAAAAGCAGCTGTCACCATCCACGTTATaGAAGCTCTCCCATACCACCTGCTCCTCCTGTAGAAAACCTTGG +
Preference number: 5 (lower is better)
Translates to: RWKSESQKQLSPSTL*KLSHTTCSSCRKPW
Trigger: CCAAGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAGCTTGCATAACGTGGATGGTGACAGCTGCTTTTGTGACTCGGACTTCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp TTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACCCTTCTGTCACGAGGTaGGAGTCACTAGAGTGTTTA +
Preference number: 5 (lower is better)
Translates to: FQIGVLTSKQPGSMYPRDPSVTR*ESLECL
Trigger: TAAACACTCTAGTGACTCCAACCTCGTGACAGAAGG...GTCCCGTGGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCCTCTTCTTGTTGAAGTaGTTGGGCCAGTTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSLFLLK*LGQFQV
Trigger: GACCTGGAACTGGCCCAACAACTTCAACAAGAAGAG...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATTTTCTCTTCTTGTTGAAGTaGTTGGGCCAGTTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: VHVSTGLFQERGWGTRDFLFLLK*LGQFQV
Trigger: GACCTGGAACTGGCCCAACAACTTCAACAAGAAGAG...AAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCATTGTTGATACTCTTCTaGTTGAAGTTGTTGGGCCAG +
Preference number: 5 (lower is better)
Translates to: KQPGSMYPRDYSRKGGGALLILF*LKLLGQ
Trigger: CTGGCCCAACAACTTCAACAAGAAGAGTATCAACAA...TGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAAGTCTGACTCAGTCTTaGACCTCTGCCGCCGCTCTC +
Preference number: 5 (lower is better)
Translates to: KQAGTQERCFPDRCLDQQSLTQS*TSAAAL
Trigger: GAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACT...TTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGGTAGTCCTGGTCCACTaGCAGCTGCTTCTCTGGAGA +
Preference number: 5 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKVVLVH*QLLLWR
Trigger: TCTCCAGAGAAGCAGCTGCAAGTGGACCAGGACTAC...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107187.9
CDS TCA 90 bp TGGACAGAAGGCAGTTTCCAAGGTGTGTCAGGAGCTCATCTGATGTaGTCACTTCCTTCTGAGGGGGCAGCTTCACCTTCCACTGAAGAA +
Preference number: 5 (lower is better)
Translates to: WTEGSFQGVSGAHLM*SLPSEGAASPSTEE
Trigger: TTCTTCAGTGGAAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTGGAAACTGCCTTCTGTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 90 bp TTTGATGGACAGAAGGCAGTTTCCAAGGTGTGTCAGGAGCTCATCTaGTGTGATCACTTCCTTCTGAGGGGGCAGCTTCACCTTCCACTG +
Preference number: 5 (lower is better)
Translates to: FDGQKAVSKVCQELI*CDHFLLRGQLHLPL
Trigger: CAGTGGAAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTGGAAACTGCCTTCTGTCCATCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 90 bp TGCTCCATCAGCATCTGCACCATCCTTGTCCTGAGGATGCTTCTCTaGTCCAGACAGGGCCTCATGGTTTTCAGATTCAACAGTTTCTGC +
Preference number: 5 (lower is better)
Translates to: CSISICTILVLRMLL*SRQGLMVFRFNSFC
Trigger: GCAGAAACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGGGGCACCAGAGATTTTCTGCTGAAAGTTAAGTaGAAGGCCCTCAGACTTCTC +
Preference number: 5 (lower is better)
Translates to: VHVSTGLFQERGWGTRDFLLKVK*KALRLL
Trigger: GAGAAGTCTGAGGGCCTTCAACTTAACTTTCAGCAG...AAAATCTCTGGTGCCCCACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp ATTCTCTGTGTCTCAGGGATTGAGATGGGGTGGGATCCTGCAAGTCACAGCCTGCTGCTGAAAGTTAAGTaGAAGGCCCTCAGACTTCTC +
Preference number: 5 (lower is better)
Translates to: ILCVSGIEMGWDPASHSLLLKVK*KALRLL
Trigger: GAGAAGTCTGAGGGCCTTCAACTTAACTTTCAGCAG...CAGGCTGTGACTTGCAGGATCCCACCCCATCTCAATCCCTGAGACACAGAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CCAGCAAGCAGCCTGGGTCCATGTATCCACGGGACTATTCCAGGAAAGGGGGTGTTGAACTGCTTGCTGTaGTTGATACTCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: PASSLGPCIHGTIPGKGVLNCLL*LILFLL
Trigger: CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAA...CACCCCCTTTCCTGGAATAGTCCCGTGGATACATGGACCCAGGCTGCTTGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACGACTTCTCTTGGGGTTaGATGGACAGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: RSKQAGTQERCFPDRCLDDFSWG*MDRRQF
Trigger: AAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTC...GTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGCCCTCAGACTTCTCTaGGGGTTTGATGGACAGAAG +
Preference number: 5 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSALRLL*GFDGQK
Trigger: CTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGC...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCCTTCTGTCACGAGGTaGGAGTCACTAGAGTGTTTA +
Preference number: 5 (lower is better)
Translates to: NRQGHKRDAFQIGVLTSKPSVTR*ESLECL
Trigger: TAAACACTCTAGTGACTCCAACCTCGTGACAGAAGG...CTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCCACAGGTTGAACTGCTaGCTGTTGTTGATACTCTTC +
Preference number: 5 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTHRLNC*LLLILF
Trigger: GAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTG...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTGATCCCCAACAGGACTTCTCTTGGGGTTaGATGGACAGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: KMVPSLTLAPIVCSDPQQDFSWG*MDRRQF
Trigger: AAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTC...CTGTTGGGGATCAGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp GGAGCAAACAGGCAGGGACACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCTTGATACTCTTCTTGTaGAAGTTGTTGGGCCAGTTC +
Preference number: 5 (lower is better)
Translates to: GANRQGHKRDAFQIGVLTLILFL*KLLGQF
Trigger: GAACTGGCCCAACAACTTCAACAAGAAGAGTATCAA...GGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCAACTGCTTGCTGTTGTaGATACTCTTCTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSNCLLL*ILFLLK
Trigger: CTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTT...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp CACAAGAGAGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCTTGAACTGCTTGCTGTaGTTGATACTCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: HKRDAFQIGVLTSKQPGSLNCLL*LILFLL
Trigger: CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAA...GGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCTCTCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGATGCTTTCCAGATAGGTGTCTTGACCAGCAAGCAGCCTGGGTCCATGTATCCAACTGCTTGCTGTTGTaGATACTCTTCTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: RCFPDRCLDQQAAWVHVSNCLLL*ILFLLK
Trigger: CTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTT...GGATACATGGACCCAGGCTGCTTGCTGGTCAAGACACCTATCTGGAAAGCATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTTGATACTCTTCTTGTaGAAGTTGTTGGGCCAGTTC +
Preference number: 5 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSLILFL*KLLGQF
Trigger: GAACTGGCCCAACAACTTCAACAAGAAGAGTATCAA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTAACTGCTTGCTGTTGTaGATACTCTTCTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSNCLLL*ILFLLK
Trigger: CTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTT...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS-3UTR CAA 90 bp AGTACAAGGGCAAAGATGGTACCAAGTCTGACCTTGGCACCTATTGTCTGTTCTTTGAACTGCTTGCTGTaGTTGATACTCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: STRAKMVPSLTLAPIVCSLNCLL*LILFLL
Trigger: CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAA...AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp ACCTCTGCCGCCGCTCTCCAGCTGGACGTCCAGATGTaGCTCCTCTCCCCTGGGGCGAAGGAGCCCTTGTTC +
Preference number: 6 (lower is better)
Translates to: TSAAALQLDVQM*LLSPGAKEPLF
Trigger: GAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGGCAGAGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp CTGAGGCCCAACGTGCCTTGTGGCTGCTGCTGCTGCTaGTCCACTTGCAGCTGCTTCTCTGGAGAGCCACCC +
Preference number: 6 (lower is better)
Translates to: LRPNVPCGCCCC*STCSCFSGEPP
Trigger: GGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039537.14
ENSMUST00000168223.2
CDS CCA 72 bp GCTCGCACAGGCCATGGTAGGTCAACTGTGCCGCAGTaGTCTCCAGGAACTGCTCCGCAACCAAGCCTTCTG +
Preference number: 6 (lower is better)
Translates to: ARTGHGRSTVPQ*SPGTAPQPSLL
Trigger: CAGAAGGCTTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp TGCTGTGAGCTCGCACAGGCCATGGTAGGTCAACTGTaGCGCAGTGGTCTCCAGGAACTGCTCCGCAACCAA +
Preference number: 6 (lower is better)
Translates to: CCELAQAMVGQL*RSGLQELLRNQ
Trigger: TTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGCTCACAGCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 72 bp CCAGCTGCTCCATCAGCATCTGCACCATCCTTGTCCTaGGGATGCTTCTCTGGTCCAGACAGGGCCTCATGG +
Preference number: 6 (lower is better)
Translates to: PAAPSASAPSLS*GCFSGPDRASW
Trigger: CCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCAGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp CAGAGCAGAACACAGTCTGACTCAGTCTTTGACCTCTaGCGCCGCTCTCCAGCTGGACGTCCAGATGTGGCT +
Preference number: 6 (lower is better)
Translates to: QSRTQSDSVFDL*RRSPAGRPDVA
Trigger: AGCCACATCTGGACGTCCAGCTGGAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACTGTGTTCTGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp ATGATGGCTAGAAGAGGACACGGACCATTGGTGCTCTaGGTGATGATCGGGGTCCGTTCTCCCTTCCAGGGG +
Preference number: 6 (lower is better)
Translates to: MMARRGHGPLVL*VMIGVRSPFQG
Trigger: CCCCTGGAAGGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTAGCCATCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp CATTCCGGCGTATACTCAAAGTCGGAGACGCCCGTGAATCGCACATaGACGTCCAGACCTGTGGCCAGTTTCGGGAGCACCGTCATTGCA +
Preference number: 6 (lower is better)
Translates to: HSGVYSKSETPVNRT*TSRPVASFGSTVIA
Trigger: TGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGACGTCAATGTGCGATTCACGGGCGTCTCCGACTTTGAGTATACGCCGGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 72 bp CTTCTTGTTGAAGTTGTTGGGCCAGTTCCAGGTCACTaGGGCCCAACGTGCCTTGTGGCTGCTGCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: LLVEVVGPVPGH*GPTCLVAAAAA
Trigger: AGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp GTATACTCAAAGTCGGAGACGCCCGTGAATCGCACATaGACGTCCAGACCTGTGGCCAGTTTCGGGAGCACC +
Preference number: 6 (lower is better)
Translates to: VYSKSETPVNRT*TSRPVASFGST
Trigger: GGTGCTCCCGAAACTGGCCACAGGTCTGGACGTCAATGTGCGATTCACGGGCGTCTCCGACTTTGAGTATAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp CAGATGTGGCTCCTCTCCCCTGGGGCGAAGGAGCCCTaGTTCGCACAGGTTGAACTGCTTGCTGTTGTTGAT +
Preference number: 6 (lower is better)
Translates to: QMWLLSPGAKEP*FAQVELLAVVD
Trigger: ATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp CTGGACGTCCAGATGTGGCTCCTCTCCCCTGGGGCGAAGGAGCCCTaGTTCGCACAGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTT +
Preference number: 6 (lower is better)
Translates to: LDVQMWLLSPGAKEP*FAQVELLAVVDTLL
Trigger: AAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACATCTGGACGTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp AGGATGTTCATGATGGCTAGAAGAGGACACGGACCATaGGTGCTCTGGGTGATGATCGGGGTCCGTTCTCCC +
Preference number: 6 (lower is better)
Translates to: RMFMMARRGHGP*VLWVMIGVRSP
Trigger: GGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTAGCCATCATGAACATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp AGGAGGACACTCAAGATTTTCACCATCCTGGGCTGGTGGCAAAGTTaGGTCTCCTGGCTCCTGTTCTCCAGCTGCTCCATCAGCATCTGC +
Preference number: 6 (lower is better)
Translates to: RRTLKIFTILGWWQS*VSWLLFSSCSISIC
Trigger: GCAGATGCTGATGGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 72 bp GGCAGTTTCCAAGGTGTGTCAGGAGCTCATCTGATGTaGTCACTTCCTTCTGAGGGGGCAGCTTCACCTTCC +
Preference number: 6 (lower is better)
Translates to: GSFQGVSGAHLM*SLPSEGAASPS
Trigger: GGAAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTGGAAACTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp AGGAGGACACTCAAGATTTTCACCATCCTGGGCTGGTaGCAAAGTTTGGTCTCCTGGCTCCTGTTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RRTLKIFTILGW*QSLVSWLLFSS
Trigger: GCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp AGGAGGAGGACACTCAAGATTTTCACCATCCTGGGCTaGTGGCAAAGTTTGGTCTCCTGGCTCCTGTTCTCC +
Preference number: 6 (lower is better)
Translates to: RRRTLKIFTILG*WQSLVSWLLFS
Trigger: GGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp ACAGCCTCGGGACTCTGTGGATCCACCAGCCAGCCATaGTATAGAGGTATTCCCAGCAAGTCAAAGATGCTG +
Preference number: 6 (lower is better)
Translates to: TASGLCGSTSQP*YRGIPSKSKML
Trigger: CAGCATCTTTGACTTGCTGGGAATACCTCTATACCATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 72 bp CAGAAGGCAGTTTCCAAGGTGTGTCAGGAGCTCATCTaGTGTGATCACTTCCTTCTGAGGGGGCAGCTTCAC +
Preference number: 6 (lower is better)
Translates to: QKAVSKVCQELI*CDHFLLRGQLH
Trigger: GTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTGGAAACTGCCTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp TCGAAAGAAGACACTAAGTTCATCTTCCGTGGCAGCTaGTGTGAGCTCGCACAGGCCATGGTAGGTCAACTG +
Preference number: 6 (lower is better)
Translates to: SKEDTKFIFRGS*CELAQAMVGQL
Trigger: CAGTTGACCTACCATGGCCTGTGCGAGCTCACAGCAGCTGCCACGGAAGATGAACTTAGTGTCTTCTTTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp TCCGAGTCACAAAAGCAGCTGTCACCATCCACGTTATaGAAGCTCTCCCATACCACCTGCTCCTCCTGTAGA +
Preference number: 6 (lower is better)
Translates to: SESQKQLSPSTL*KLSHTTCSSCR
Trigger: TCTACAGGAGGAGCAGGTGGTATGGGAGAGCTTGCATAACGTGGATGGTGACAGCTGCTTTTGTGACTCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp TCTCCCCTGGGGCGAAGGAGCCCTTGTTCGCACAGGTaGAACTGCTTGCTGTTGTTGATACTCTTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: SPLGRRSPCSHR*NCLLLLILFLL
Trigger: CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp TGTGGCTCCTCTCCCCTGGGGCGAAGGAGCCCTTGTTCGCACAGGTaGAACTGCTTGCTGTTGTTGATACTCTTCTTGTTGAAGTTGTTG +
Preference number: 6 (lower is better)
Translates to: CGSSPLGRRSPCSHR*NCLLLLILFLLKLL
Trigger: CAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp AGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTTGTTGAAGTTGTaGGGCCAGTTCCAGGTCACTGAGGCCCAACGTGCCTTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: RLNCLLLLILFLLKL*GQFQVTEAQRALWL
Trigger: CAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp CACAGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTTGTTGAAGTaGTTGGGCCAGTTCCAGGTCACTGAGGCCCAACGTGCCTTGTGG +
Preference number: 6 (lower is better)
Translates to: HRLNCLLLLILFLLK*LGQFQVTEAQRALW
Trigger: CCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp TGTTCGCACAGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTTGTaGAAGTTGTTGGGCCAGTTCCAGGTCACTGAGGCCCAACGTGCC +
Preference number: 6 (lower is better)
Translates to: CSHRLNCLLLLILFL*KLLGQFQVTEAQRA
Trigger: GGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp GTCCAGACCTGTGGCCAGTTTCGGGAGCACCGTCATTaGATCGTCCACATTCTGCTGAAAGTTAAGTTGAAG +
Preference number: 6 (lower is better)
Translates to: VQTCGQFREHRH*IVHILLKVKLK
Trigger: CTTCAACTTAACTTTCAGCAGAATGTGGACGATGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp CATGGTATAGAGGTATTCCCAGCAAGTCAAAGATGCTaGATTCCGGCGTATACTCAAAGTCGGAGACGCCCG +
Preference number: 6 (lower is better)
Translates to: HGIEVFPASQRC*IPAYTQSRRRP
Trigger: CGGGCGTCTCCGACTTTGAGTATACGCCGGAATGCAGCATCTTTGACTTGCTGGGAATACCTCTATACCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp TCACCATCCACGTTATGCAAGCTCTCCCATACCACCTaGTCCTCCTGTAGAAAACCTTGGTCAGTGACCAGT +
Preference number: 6 (lower is better)
Translates to: SPSTLCKLSHTT*SSCRKPWSVTS
Trigger: ACTGGTCACTGACCAAGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAGCTTGCATAACGTGGATGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CCA 72 bp AGCATCTGCACCATCCTTGTCCTGAGGATGCTTCTCTaGTCCAGACAGGGCCTCATGGTTTTCAGATTCAAC +
Preference number: 6 (lower is better)
Translates to: SICTILVLRMLL*SRQGLMVFRFN
Trigger: GTTGAATCTGAAAACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp TGCTTGCTGTTGTTGATACTCTTCTTGTTGAAGTTGTaGGGCCAGTTCCAGGTCACTGAGGCCCAACGTGCC +
Preference number: 6 (lower is better)
Translates to: CLLLLILFLLKL*GQFQVTEAQRA
Trigger: GGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp CCTTGTTCGCACAGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTaGTTGAAGTTGTTGGGCCAGTTCCAGGTCACTGAGGCCCAACGT +
Preference number: 6 (lower is better)
Translates to: PCSHRLNCLLLLILF*LKLLGQFQVTEAQR
Trigger: ACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS GCA 72 bp AGCCATGGTATAGAGGTATTCCCAGCAAGTCAAAGATaGTGCATTCCGGCGTATACTCAAAGTCGGAGACGC +
Preference number: 6 (lower is better)
Translates to: SHGIEVFPASQR*CIPAYTQSRRR
Trigger: GCGTCTCCGACTTTGAGTATACGCCGGAATGCAGCATCTTTGACTTGCTGGGAATACCTCTATACCATGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp AGGAACTGCTCCGCAACCAAGCCTTCTGTCACGAGGTaGGAGTCACTAGAGTGTTTACAGGTGATGATCTTC +
Preference number: 6 (lower is better)
Translates to: RNCSATKPSVTR*ESLECLQVMIF
Trigger: GAAGATCATCACCTGTAAACACTCTAGTGACTCCAACCTCGTGACAGAAGGCTTGGTTGCGGAGCAGTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 90 bp GTCCACATTCTGCTGAAAGTTAAGTTGAAGGCCCTCAGACTTCTCTaGGGGTTTGATGGACAGAAGGCAGTTTCCAAGGTGTGTCAGGAG +
Preference number: 6 (lower is better)
Translates to: VHILLKVKLKALRLL*GFDGQKAVSKVCQE
Trigger: CTCCTGACACACCTTGGAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGCCTTCAACTTAACTTTCAGCAGAATGTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS TCA 72 bp GCAGCTTCACCTTCCACTGAAGAAAAAGGATGTTCATaGTGGCTAGAAGAGGACACGGACCATTGGTGCTCT +
Preference number: 6 (lower is better)
Translates to: AASPSTEEKGCS*WLEEDTDHWCS
Trigger: AGAGCACCAATGGTCCGTGTCCTCTTCTAGCCATCATGAACATCCTTTTTCTTCAGTGGAAGGTGAAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp AACTGCTTGCTGTTGTTGATACTCTTCTTGTTGAAGTaGTTGGGCCAGTTCCAGGTCACTGAGGCCCAACGT +
Preference number: 6 (lower is better)
Translates to: NCLLLLILFLLK*LGQFQVTEAQR
Trigger: ACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp GGGCGAAGGAGCCCTTGTTCGCACAGGTTGAACTGCTaGCTGTTGTTGATACTCTTCTTGTTGAAGTTGTTG +
Preference number: 6 (lower is better)
Translates to: GRRSPCSHRLNC*LLLILFLLKLL
Trigger: CAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp CGTCATTGCATCGTCCACATTCTGCTGAAAGTTAAGTaGAAGGCCCTCAGACTTCTCTTGGGGTTTGATGGA +
Preference number: 6 (lower is better)
Translates to: RHCIVHILLKVK*KALRLLLGFDG
Trigger: TCCATCAAACCCCAAGAGAAGTCTGAGGGCCTTCAACTTAACTTTCAGCAGAATGTGGACGATGCAATGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2
CDS CAA 72 bp CACAGGTTGAACTGCTTGCTGTTGTTGATACTCTTCTaGTTGAAGTTGTTGGGCCAGTTCCAGGTCACTGAG +
Preference number: 6 (lower is better)
Translates to: HRLNCLLLLILF*LKLLGQFQVTE
Trigger: CTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039537.14
ENSMUST00000107187.9
ENSMUST00000168223.2