Pregenerated sensors for MINAR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050875Ensembl transcript IDs: ENSMUST00000058633.9, ENSMUST00000117064.8, ENSMUST00000118510.8, ENSMUST00000165666.9, ENSMUST00000175830.2, ENSMUST00000175897.8
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGGAGGAGGAAGGAGGAGGGAGGAGGAGGAAGGAGGAATGATGTaGAAAACAGGTAAGCATGAAGACAAGCAGTTGCCAGCACTTGGC | + |
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Preference number: 1 (lower is better) Translates to: GGGGRRREEEEGGMM*KTGKHEDKQLPALG Trigger: GCCAAGTGCTGGCAACTGCTTGTCTTCATGCTTACCTGTTTTTCACATCATTCCTCCTTCCTCCTCCTCCCTCCTCCTTCCTCCTCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR TCA 90 bp | AGCCCCTGGAATACCTGCTTCACAAAGGACAAACCCAGACTGGAATaGCACACAGGTTTCACAGACCAAAGCAGAGAGGCCAACATAACA | + |
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Preference number: 1 (lower is better) Translates to: SPWNTCFTKDKPRLE*HTGFTDQSREANIT Trigger: TGTTATGTTGGCCTCTCTGCTTTGGTCTGTGAAACCTGTGTGTCATTCCAGTCTGGGTTTGTCCTTTGTGAAGCAGGTATTCCAGGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR CAA 90 bp | GCCTTAGGTAAGAACGTCCAGGGAGAAGACAGACACTTTGGTTCTTaGTATCCTGGGGCTTGTTCCCAGGTATCTGCACCCACCAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: ALGKNVQGEDRHFGS*YPGACSQVSAPTRR Trigger: CCTTCTGGTGGGTGCAGATACCTGGGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTCTCCCTGGACGTTCTTACCTAAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | GGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCCTCCACCTATTTCTGGTAGTATGGAGTGACTTTTaGTATTGTGAGCCCCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: GGGSIPGLFPVPLHLFLVVWSDF*YCEPLE Trigger: TTCCAGGGGCTCACAATATCAAAAGTCACTCCATAC...TACCAGAAATAGGTGGAGGGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | TATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAGCCTGCCAGTTCCCTTCTCTaGCAATCTTTTGTTCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: YQGAREDGTLWEEEEEKPASSLL*QSFVQA Trigger: GGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGGC...AGGCTTTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | ATGCTCAGGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCCTCCACCTATTTGTCATACTCCTCAATaGTCCATGAAGGACTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: MLRGWQHSWTLSSAPPPICHTPQ*SMKDSF Trigger: AAAAGAGTCCTTCATGGACCATTGAGGAGTATGACA...AATAGGTGGAGGGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCCTGAGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR-3UTR TCA 90 bp | GGCGTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAGTATGGAGTGACTTTTaGTATTGTGAGCCCCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: GVIKGHERTALFGKKKKKVWSDF*YCEPLE Trigger: TTCCAGGGGCTCACAATATCAAAAGTCACTCCATAC...TTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAACGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | CCACTGAAGAAAAAGCTACAGGTTAGGAGCCAACCGCTCTTCTCCCCTCCATGTTTATGCAGCTGTGGCTaGCCAAGTTTGTTTCTGCTA | + |
|
Preference number: 2 (lower is better) Translates to: PLKKKLQVRSQPLFSPPCLCSCG*PSLFLL Trigger: TAGCAGAAACAAACTTGGTCAGCCACAGCTGCATAA...ACATGGAGGGGAGAAGAGCGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | AGTGTCGAAGCCAGGAGTGTACGTATCCCCCAACCAAAAGCGCAGGTCGTTGGGACAGACAGATTCTCTTaGAAGTACTTAGAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: SVEARSVRIPQPKAQVVGTDRFS*KYLEGI Trigger: AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGT...CCCAACGACCTGCGCTTTTGGTTGGGGGATACGTACACTCCTGGCTTCGACACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCCTCCACCTATTTCTGGTACATTCTAAAGGACAATaGTGTTTGGTCACACAGTTA | + |
|
Preference number: 2 (lower is better) Translates to: GGGSIPGLFPVPLHLFLVHSKGQ*CLVTQL Trigger: TAACTGTGTGACCAAACACCATTGTCCTTTAGAATG...TACCAGAAATAGGTGGAGGGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | GGCGTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAGATATTGTGAGCCCCTaGAATACCTGCTTCACAAAG | + |
|
Preference number: 2 (lower is better) Translates to: GVIKGHERTALFGKKKKKDIVSP*NTCFTK Trigger: CTTTGTGAAGCAGGTATTCCAGGGGCTCACAATATC...TTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAACGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | CCTCCATGTTGTACAGAATCCTTAAGCCAGTTCCCTTCTCTGACAATCTTTTGTGCAGTTGCCAGCACTTaGCGCAGTCCGCTTCCAATC | + |
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Preference number: 2 (lower is better) Translates to: PPCCTESLSQFPSLTIFCAVAST*RSPLPI Trigger: GATTGGAAGCGGACTGCGCCAAGTGCTGGCAACTGC...ACAAAAGATTGTCAGAGAAGGGAACTGGCTTAAGGATTCTGTACAACATGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | GGCGTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAGAAGACAGACACTTTaGTTCTTTGTATCCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: GVIKGHERTALFGKKKKKRRQTL*FFVSWG Trigger: GCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTCT...TTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAACGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | AGCCAGTTCCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGCTACAGCTTCCCGAGTaGCCAGAGGAGAAGGAAAAG | + |
|
Preference number: 2 (lower is better) Translates to: SQFPSLTIFCSGLTVIQLLQLPE*PEEKEK Trigger: CTTTTCCTTCTCCTCTGGGCACTCGGGAAGCTGTAG...CAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | GGCGTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAAACGACATCACCACTaGAGAAAAAGCTACAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: GVIKGHERTALFGKKKKKKRHHH*RKSYRL Trigger: TAACCTGTAGCTTTTTCTTCAGTGGTGATGTCGTTT...TTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAACGCC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR CAA 90 bp | ATGTTGTACAGAATCCTTAAGCCAGTTCCCTTCTCTGACAATCTTTaGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAGGGGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: MLYRILKPVPFSDNL*FRPDCHSIECSGGG Trigger: GCCACCCCCTGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGGCTTAAGGATTCTGTACAACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | CTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAGGGGGTGTTATGCAGCTGTGGCTaGCCAAGTTTGTTTCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: LTIFCSGLTVIQLNAQGVLCSCG*PSLFLL Trigger: TAGCAGAAACAAACTTGGTCAGCCACAGCTGCATAA...CACCCCCTGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | CCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCATTGTTCCCAGGTATCTaGACCCACCAGAAGGTTGTC | + |
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Preference number: 2 (lower is better) Translates to: PFSDNLLFRPDCHSIECSLFPGI*THQKVV Trigger: GACAACCTTCTGGTGGGTGCAGATACCTGGGAACAA...TGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | GTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAGCTTGATTATGCAGCTGTaGCTGACCAAGTTTGTTTCT | + |
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Preference number: 2 (lower is better) Translates to: VIKGHERTALFGKKKKKSLIMQL*LTKFVS Trigger: AGAAACAAACTTGGTCAGCCACAGCTGCATAATCAA...GCTTTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGAAAACGACATCACCACTGAAGAAAAAGCTACAGGTTAGGAGCCAACCGGTATGGAGTGACTTTTaGTATTGTGAGCCCCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: TKKTTSPLKKKLQVRSQPVWSDF*YCEPLE Trigger: TTCCAGGGGCTCACAATATCAAAAGTCACTCCATAC...CGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGGTGATGTCGTTTTCTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | CCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAACTAGAGGTCACACTTaGCAGTTCCTATCAATCCCC | + |
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Preference number: 2 (lower is better) Translates to: PFSDNLLFRPDCHSIECSTRGHT*QFLSIP Trigger: GGGGATTGATAGGAACTGGCAAGTGTGACCTCTAGT...TGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | CCTCCATGTTGTACAGAATCCTTAAGCCAGTTCCCTTCTCTGACAATCTTTTGTACTAGAGGTCACACTTaGCAGTTCCTATCAATCCCC | + |
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Preference number: 2 (lower is better) Translates to: PPCCTESLSQFPSLTIFCTRGHT*QFLSIP Trigger: GGGGATTGATAGGAACTGGCAAGTGTGACCTCTAGT...ACAAAAGATTGTCAGAGAAGGGAACTGGCTTAAGGATTCTGTACAACATGGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR CAA 90 bp | GAATGGAGGCCACAAGGAGTAAAATCAGACCCATGTGACACAATTTaGATCGCTTGTTGCGTTTCTTCTTCTTTTTCAGCAGAGTGTCGA | + |
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Preference number: 2 (lower is better) Translates to: EWRPQGVKSDPCDTI*IACCVSSSFSAECR Trigger: TCGACACTCTGCTGAAAAAGAAGAAGAAACGCAACAAGCGATCAAAATTGTGTCACATGGGTCTGATTTTACTCCTTGTGGCCTCCATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR-3UTR GCA 90 bp | ATGACACACAGGTTTCACAGACCAAAGCAGAGAGGCCAACATAACACAAGCGACACAGACAGATTCTCTTaGAAGTACTTAGAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: MTHRFHRPKQRGQHNTSDTDRFS*KYLEGI Trigger: AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGT...GTCGCTTGTGTTATGTTGGCCTCTCTGCTTTGGTCTGTGAAACCTGTGTGTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGACCAAAGCAGAGAGGCCAACATAACACAAGCGACGCTCACATTCTAAAGACAGACAGATTCTCTTaGAAGTACTTAGAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: HRPKQRGQHNTSDAHILKTDRFS*KYLEGI Trigger: AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGT...CTTTAGAATGTGAGCGTCGCTTGTGTTATGTTGGCCTCTCTGCTTTGGTCTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCGATATTGTGAGCCCCTaGAATACCTGCTTCACAAAG | + |
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Preference number: 2 (lower is better) Translates to: VPFSDNLLFRPDCHSIECDIVSP*NTCFTK Trigger: CTTTGTGAAGCAGGTATTCCAGGGGCTCACAATATC...GCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR CAA 90 bp | ACACAGTTAGCAATGCGGACGTTCACAATGCACAGACAGATTCTCTaGCAAGTACTTAGAAGGCATTTTAGAGCTTTAAAGATGGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: TQLAMRTFTMHRQIL*QVLRRHFRALKMGL Trigger: CAGACCCATCTTTAAAGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCATTGCTAACTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| 3UTR CAA 90 bp | GGGTTTTCCTTCAGATGTCCAGAGAGATTTGTATGCACAGAATGCTaGTCATACTCCTCAATGGTCCATGAAGGACTCTTTTTCCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: GFSFRCPERFVCTEC*SYSSMVHEGLFFLS Trigger: AGAAAGGAAAAAGAGTCCTTCATGGACCATTGAGGAGTATGACAAGCATTCTGTGCATACAAATCTCTCTGGACATCTGAAGGAAAACCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAGAGGCCAACATAACACAAGCGACGCTCACATTCTAAAGGACAATGGTGTTACAGACAGATTCTCTTaGAAGTACTTAGAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: QRGQHNTSDAHILKDNGVTDRFS*KYLEGI Trigger: AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGT...AACACCATTGTCCTTTAGAATGTGAGCGTCGCTTGTGTTATGTTGGCCTCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| 3UTR-3UTR CCA 90 bp | AAGAAAACGACATCACCACTGAAGAAAAAGCTACAGGTTAGGAGCCAACCGCTCTCCAGAAAGGATCACTaGGGAAATTACAATAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: KKTTSPLKKKLQVRSQPLSRKDH*GNYNRF Trigger: AAACCTATTGTAATTTCCCCAGTGATCCTTTCTGGA...GAGCGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGGTGATGTCGTTTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR GCA 90 bp | CTTTACTTCAAGTATCGTTATAAGCAATACAGCGAGATAGTAAGGCGTTATCAAAGCCCCTGGAATACCTaGTTCACAAAGGACAAACCC | + |
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Preference number: 2 (lower is better) Translates to: LYFKYRYKQYSEIVRRYQSPWNT*FTKDKP Trigger: GGGTTTGTCCTTTGTGAAGCAGGTATTCCAGGGGCT...TTGATAACGCCTTACTATCTCGCTGTATTGCTTATAACGATACTTGAAGTAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | AGCCAGTTCCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGCATTCTAAAGGACAATaGTGTTTGGTCACACAGTTA | + |
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Preference number: 2 (lower is better) Translates to: SQFPSLTIFCSGLTVIQLHSKGQ*CLVTQL Trigger: TAACTGTGTGACCAAACACCATTGTCCTTTAGAATG...CAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CCA 90 bp | CCAGTTCCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATCCAGAAAGGATCACTaGGGAAATTACAATAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: PVPFSDNLLFRPDCHSIESRKDH*GNYNRF Trigger: AAACCTATTGTAATTTCCCCAGTGATCCTTTCTGGA...TTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR TCA 90 bp | ACCAGAAGGTTGTCAATACACAAAGAAAACGACATCACCACTGAAGAAAAAGCTAAAATCAGACCCATGTaGCACAATTTTGATCGCTTG | + |
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Preference number: 2 (lower is better) Translates to: TRRLSIHKENDITTEEKAKIRPM*HNFDRL Trigger: CAAGCGATCAAAATTGTGTCACATGGGTCTGATTTT...AGCTTTTTCTTCAGTGGTGATGTCGTTTTCTTTGTGTATTGACAACCTTCTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR CCA 72 bp | GTAGCTCAGCAGAAGCCTTCTGGTCACCCTAGCTGTTaGGCAGATGAGCTACAGCTTCCCGAGTGCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: VAQQKPSGHPSC*ADELQLPECPE Trigger: CTCTGGGCACTCGGGAAGCTGTAGCTCATCTGCCCAACAGCTAGGGTGACCAGAAGGCTTCTGCTGAGCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CAA 90 bp | ATGCTCAGGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCCTCCACCTATTTTTGTATCCTGGGGCTaGTTCCCAGGTATCTGCACC | + |
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Preference number: 3 (lower is better) Translates to: MLRGWQHSWTLSSAPPPIFVSWG*FPGICT Trigger: GGTGCAGATACCTGGGAACAAGCCCCAGGATACAAA...AATAGGTGGAGGGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCCTGAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR CCA 72 bp | CCAGGGAGAAGACAGACACTTTGGTTCTTTGTATCCTaGGGCTTGTTCCCAGGTATCTGCACCCACCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: PGRRQTLWFFVS*GLFPGICTHQK Trigger: CTTCTGGTGGGTGCAGATACCTGGGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTCTCCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CAA 90 bp | GGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCCTCCACCTATTTCTGGTAAAAGGACAATGGTGTTaGGTCACACAGTTAGCAATG | + |
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Preference number: 3 (lower is better) Translates to: GGGSIPGLFPVPLHLFLVKGQWC*VTQLAM Trigger: CATTGCTAACTGTGTGACCAAACACCATTGTCCTTT...TACCAGAAATAGGTGGAGGGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CAA 90 bp | CTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAGGGGGTGAGCAGTTGCCAGCACTaGGCGCAGTCCGCTTCCAAT | + |
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Preference number: 3 (lower is better) Translates to: LTIFCSGLTVIQLNAQGVSSCQH*AQSASN Trigger: ATTGGAAGCGGACTGCGCCAAGTGCTGGCAACTGCT...CACCCCCTGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CAA 90 bp | CCTGGGGCTTGTTCCCAGGTATCTGCACCCACCAGAAGGTTGTCAATACACAAACTGACTGTCATTCAATaGAATGCTCAGGGGGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: PGACSQVSAPTRRLSIHKLTVIQ*NAQGVA Trigger: TGCCACCCCCTGAGCATTCAATTGAATGACAGTCAG...TTTGTGTATTGACAACCTTCTGGTGGGTGCAGATACCTGGGAACAAGCCCCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCGAAGCCAGGAGTGTACGTATCCCCCAACCAAAAGCGCAGGTCGTTGGGGATGTCCAGAGAGATTaGTATGCACAGAATGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: SVEARSVRIPQPKAQVVGDVQRD*YAQNAC Trigger: ACAAGCATTCTGTGCATACAAATCTCTCTGGACATC...CCCAACGACCTGCGCTTTTGGTTGGGGGATACGTACACTCCTGGCTTCGACACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| 3UTR GCA 72 bp | GGTAAACGTGTACCCACTGCCACTAGAGGTCACACTTaGCAGTTCCTATCAATCCCCAAGCACGATTGGATG | + |
|
Preference number: 3 (lower is better) Translates to: GKRVPTATRGHT*QFLSIPKHDWM Trigger: CATCCAATCGTGCTTGGGGATTGATAGGAACTGGCAAGTGTGACCTCTAGTGGCAGTGGGTACACGTTTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR TCA 72 bp | GGAAGGAGGAGGGAGGAGGAGGAAGGAGGAATGATGTaGAAAACAGGTAAGCATGAAGACAAGCAGTTGCCA | + |
|
Preference number: 3 (lower is better) Translates to: GRRREEEEGGMM*KTGKHEDKQLP Trigger: TGGCAACTGCTTGTCTTCATGCTTACCTGTTTTTCACATCATTCCTCCTTCCTCCTCCTCCCTCCTCCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR CCA 72 bp | CCTGGAATACCTGCTTCACAAAGGACAAACCCAGACTaGAATGACACACAGGTTTCACAGACCAAAGCAGAG | + |
|
Preference number: 3 (lower is better) Translates to: PGIPASQRTNPD*NDTQVSQTKAE Trigger: CTCTGCTTTGGTCTGTGAAACCTGTGTGTCATTCCAGTCTGGGTTTGTCCTTTGTGAAGCAGGTATTCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | TATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAGCCTAGAGGACGGCACTCTTaGGGAAGAAGAAGAAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: YQGAREDGTLWEEEEEKPRGRHS*GRRRRK Trigger: TTTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCT...AGGCTTTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | CCTGCTTCACAAAGGACAAACCCAGACTGGAATGACACACAGGTTTCACAGACCAAAGGACAATGGTGTTaGGTCACACAGTTAGCAATG | + |
|
Preference number: 3 (lower is better) Translates to: PASQRTNPDWNDTQVSQTKGQWC*VTQLAM Trigger: CATTGCTAACTGTGTGACCAAACACCATTGTCCTTT...GGTCTGTGAAACCTGTGTGTCATTCCAGTCTGGGTTTGTCCTTTGTGAAGCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR GCA 72 bp | AATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATaGTCAGGGGGTGGCAGCATTCCTGGACTCTTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: NLLFRPDCHSIE*SGGGSIPGLFP Trigger: TGGAAAGAGTCCAGGAATGCTGCCACCCCCTGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | GAAGACAGACACTTTGGTTCTTTGTATCCTGGGGCTTGTTCCCAGGTATCTGCACACAGACAGATTCTCTaGCAAGTACTTAGAAGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: EDRHFGSLYPGACSQVSAHRQIL*QVLRRH Trigger: ATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTG...TGCAGATACCTGGGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | CACAGACCAAAGCAGAGAGGCCAACATAACACAAGCGACGCTCACATTCTAAAGCACAGACAGATTCTCTaGCAAGTACTTAGAAGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: HRPKQRGQHNTSDAHILKHRQIL*QVLRRH Trigger: ATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTG...CTTTAGAATGTGAGCGTCGCTTGTGTTATGTTGGCCTCTCTGCTTTGGTCTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGCAGAGAGGCCAACATAACACAAGCGACGCTCACATTCTAAAGGACAATGGTCACAGACAGATTCTCTaGCAAGTACTTAGAAGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: KQRGQHNTSDAHILKDNGHRQIL*QVLRRH Trigger: ATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTG...ACCATTGTCCTTTAGAATGTGAGCGTCGCTTGTGTTATGTTGGCCTCTCTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAAGACACTTTGGTTCTTaGTATCCTGGGGCTTGTTCC | + |
|
Preference number: 3 (lower is better) Translates to: PFSDNLLFRPDCHSIECSRHFGS*YPGACS Trigger: GGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCT...TGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | ACAAAGAAAACGACATCACCACTGAAGAAAAAGCTACAGGTTAGGAGCCAACCGGTATGCACAGAATGCTaGTCATACTCCTCAATGGTC | + |
|
Preference number: 3 (lower is better) Translates to: TKKTTSPLKKKLQVRSQPVCTEC*SYSSMV Trigger: GACCATTGAGGAGTATGACAAGCATTCTGTGCATAC...CGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGGTGATGTCGTTTTCTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATGCTCAGCACCCACCAGAAGGTaGTCAATACACAAAGAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: PFSDNLLFRPDCHSIECSAPTRR*SIHKEN Trigger: GTTTTCTTTGTGTATTGACAACCTTCTGGTGGGTGC...TGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR TCA 72 bp | AAGGTTGTCAATACACAAAGAAAACGACATCACCACTaGAGAAAAAGCTACAGGTTAGGAGCCAACCGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: KVVNTQRKRHHH*RKSYRLGANRS Trigger: AGAGCGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGGTGATGTCGTTTTCTTTGTGTATTGACAACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR TCA 72 bp | AGAATGGAGGCCACAAGGAGTAAAATCAGACCCATGTaGCACAATTTTGATCGCTTGTTGCGTTTCTTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: RMEATRSKIRPM*HNFDRLLRFFF Trigger: GAAGAAGAAACGCAACAAGCGATCAAAATTGTGTCACATGGGTCTGATTTTACTCCTTGTGGCCTCCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| 3UTR-3UTR CAA 90 bp | CCAGTTCCCTTCTCTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATTGAATTCTCTGACAATCTTTaGTTCAGGCCTGACTGTCAT | + |
|
Preference number: 3 (lower is better) Translates to: PVPFSDNLLFRPDCHSIEFSDNL*FRPDCH Trigger: ATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAA...TTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR-3UTR CAA 90 bp | ATTGGATGTAACTTAATTGATTATGCAGCTGTGGCTGACCAAGTTTGTTTCTGCTCACCATACAACGGGTaGTTCTTCATAACTGAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: IGCNLIDYAAVADQVCFCSPYNG*FFITED Trigger: GTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGA...GCAGAAACAAACTTGGTCAGCCACAGCTGCATAATCAATTAAGTTACATCCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| 3UTR-3UTR CAA 90 bp | CTTTACTTCAAGTATCGTTATAAGCAATACAGCGAGATAGTAAGGCGTTATCAAGCACCCACCAGAAGGTaGTCAATACACAAAGAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LYFKYRYKQYSEIVRRYQAPTRR*SIHKEN Trigger: GTTTTCTTTGTGTATTGACAACCTTCTGGTGGGTGC...TTGATAACGCCTTACTATCTCGCTGTATTGCTTATAACGATACTTGAAGTAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR TCA 90 bp | AGTGTCGAAGCCAGGAGTGTACGTATCCCCCAACCAAAAGCGCAGGTCGTTGGGAGCCACGGGGCTCTGTaGGTAGACAAGGTTTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVEARSVRIPQPKAQVVGSHGAL*VDKVLP Trigger: TGGCAAAACCTTGTCTACTCACAGAGCCCCGTGGCT...CCCAACGACCTGCGCTTTTGGTTGGGGGATACGTACACTCCTGGCTTCGACACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR GCA 90 bp | CTTTGTATCCTGGGGCTTGTTCCCAGGTATCTGCACCCACCAGAAGGTTGTCAACTCGCGAGGCTAGCCTaGAGAAGGGTTGAGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LCILGLVPRYLHPPEGCQLARLA*RRVELL Trigger: GAGGAGCTCAACCCTTCTGCAGGCTAGCCTCGCGAG...TTGACAACCTTCTGGTGGGTGCAGATACCTGGGAACAAGCCCCAGGATACAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR TCA 90 bp | GGTCACACAGTTAGCAATGCGGACGTTCACAATGCACAGACAGATTCTCTTGCACTCACAGAGTTCCTCTaGGAAGCCACGGGGCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GHTVSNADVHNAQTDSLALTEFL*EATGLC Trigger: ACAGAGCCCCGTGGCTTCTCAGAGGAACTCTGTGAG...TGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCATTGCTAACTGTGTGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR GCA 90 bp | CATTCAATTGAATGCTCAGGGGGTGGCAGCATTCCTGGACTCTTTCCAGTGCCCGACTTCACGTCAAGCTaGAGGAATTTGTCAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: HSIECSGGGSIPGLFPVPDFTSS*RNLSGW Trigger: CCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTC...GGGCACTGGAAAGAGTCCAGGAATGCTGCCACCCCCTGAGCATTCAATTGAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | AAGAACGTCCAGGGAGAAGACAGACACTTTGGTTCTTaGTATCCTGGGGCTTGTTCCCAGGTATCTGCACCC | + |
|
Preference number: 4 (lower is better) Translates to: KNVQGEDRHFGS*YPGACSQVSAP Trigger: GGGTGCAGATACCTGGGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTCTCCCTGGACGTTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR GCA 90 bp | CGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTCGCGAGGCTAGCCTaGAGAAGGGTTGAGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RSQCTDRFSCKYLEGILELARLA*RRVELL Trigger: GAGGAGCTCAACCCTTCTGCAGGCTAGCCTCGCGAG...CTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR CCA 90 bp | GGAATGACACACAGGTTTCACAGACCAAAGCAGAGAGGCCAACATAACACAAGCACTCTCAGGAAGGACTaGGTTCTCCACACCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: GMTHRFHRPKQRGQHNTSTLRKD*VLHTKS Trigger: GGATTTGGTGTGGAGAACCCAGTCCTTCCTGAGAGT...GCTTGTGTTATGTTGGCCTCTCTGCTTTGGTCTGTGAAACCTGTGTGTCATTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| 3UTR CAA 72 bp | CTGACAATCTTTTGTTCAGGCCTGACTGTCATTCAATaGAATGCTCAGGGGGTGGCAGCATTCCTGGACTCT | + |
|
Preference number: 4 (lower is better) Translates to: LTIFCSGLTVIQ*NAQGVAAFLDS Trigger: AGAGTCCAGGAATGCTGCCACCCCCTGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR TCA 90 bp | CCACTGAAGAAAAAGCTACAGGTTAGGAGCCAACCGCTCTTCTCCCCTCCATGTAAAATCAGACCCATGTaGCACAATTTTGATCGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: PLKKKLQVRSQPLFSPPCKIRPM*HNFDRL Trigger: CAAGCGATCAAAATTGTGTCACATGGGTCTGATTTT...ACATGGAGGGGAGAAGAGCGGTTGGCTCCTAACCTGTAGCTTTTTCTTCAGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
||
| CDS-3UTR CCA 90 bp | TGCGGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTACTCTCAGGAAGGACTaGGTTCTCCACACCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: CGRSQCTDRFSCKYLEGITLRKD*VLHTKS Trigger: GGATTTGGTGTGGAGAACCCAGTCCTTCCTGAGAGT...AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| CDS-3UTR CCA 90 bp | ACTTTTGATATTGTGAGCCCCTGGAATACCTGCTTCACAAAGGACAAACCCAGAACTCTCAGGAAGGACTaGGTTCTCCACACCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: TFDIVSPWNTCFTKDKPRTLRKD*VLHTKS Trigger: GGATTTGGTGTGGAGAACCCAGTCCTTCCTGAGAGT...TCTGGGTTTGTCCTTTGTGAAGCAGGTATTCCAGGGGCTCACAATATCAAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | AAACAGGTAAGCATGAAGACAAGCAGTTGCCAGCACTaGGCGCAGTCCGCTTCCAATCTAAAGCTTGATTGT | + |
|
Preference number: 4 (lower is better) Translates to: KQVSMKTSSCQH*AQSASNLKLDC Trigger: ACAATCAAGCTTTAGATTGGAAGCGGACTGCGCCAAGTGCTGGCAACTGCTTGTCTTCATGCTTACCTGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR CCA 90 bp | CATAACACAAGCGACGCTCACATTCTAAAGGACAATGGTGTTTGGTCACACAGTTTTGCCAGTGTTGTGTaGCAGGATAATTTCCACCCG | + |
|
Preference number: 4 (lower is better) Translates to: HNTSDAHILKDNGVWSHSFASVV*QDNFHP Trigger: CGGGTGGAAATTATCCTGCCACACAACACTGGCAAA...ACTGTGTGACCAAACACCATTGTCCTTTAGAATGTGAGCGTCGCTTGTGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR CCA 90 bp | GAAGACAGACACTTTGGTTCTTTGTATCCTGGGGCTTGTTCCCAGGTATCTGCATGTCATACTCCTCAATaGTCCATGAAGGACTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: EDRHFGSLYPGACSQVSACHTPQ*SMKDSF Trigger: AAAAGAGTCCTTCATGGACCATTGAGGAGTATGACA...TGCAGATACCTGGGAACAAGCCCCAGGATACAAAGAACCAAAGTGTCTGTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
||
| CDS-3UTR CCA 90 bp | CGGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTTCCTCTCTGTCTTCTTaGTATGCAGGCATAATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RTFTMHRQILLQVLRRHFSSLSS*YAGIMQ Trigger: CTGCATTATGCCTGCATACCAAGAAGACAGAGAGGA...AAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR CCA 90 bp | TTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTTTTGCCAGTGTTGTGTaGCAGGATAATTTCCACCCG | + |
|
Preference number: 4 (lower is better) Translates to: FTMHRQILLQVLRRHFRAFASVV*QDNFHP Trigger: CGGGTGGAAATTATCCTGCCACACAACACTGGCAAA...AGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | AGAATCCTTAAGCCAGTTCCCTTCTCTGACAATCTTTaGTTCAGGCCTGACTGTCATTCAATTGAATGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: RILKPVPFSDNL*FRPDCHSIECS Trigger: TGAGCATTCAATTGAATGACAGTCAGGCCTGAACAAAAGATTGTCAGAGAAGGGAACTGGCTTAAGGATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | TTCAGATGTCCAGAGAGATTTGTATGCACAGAATGCTaGTCATACTCCTCAATGGTCCATGAAGGACTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: FRCPERFVCTEC*SYSSMVHEGLF Trigger: AAAGAGTCCTTCATGGACCATTGAGGAGTATGACAAGCATTCTGTGCATACAAATCTCTCTGGACATCTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR GCA 90 bp | ATAGCTTCTTCCAAAGTTATGTCACCATACAACGGGTTGTTCTTCATAACTGAAGACTTCACGTCAAGCTaGAGGAATTTGTCAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: IASSKVMSPYNGLFFITEDFTSS*RNLSGW Trigger: CCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTC...TTCAGTTATGAAGAACAACCCGTTGTATGGTGACATAACTTTGGAAGAAGCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR CCA 90 bp | CTTTACTTCAAGTATCGTTATAAGCAATACAGCGAGATAGTAAGGCGTTATCAAACTCTCAGGAAGGACTaGGTTCTCCACACCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: LYFKYRYKQYSEIVRRYQTLRKD*VLHTKS Trigger: GGATTTGGTGTGGAGAACCCAGTCCTTCCTGAGAGT...TTGATAACGCCTTACTATCTCGCTGTATTGCTTATAACGATACTTGAAGTAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | TTTCCAGAAAGGATCACTGGGGAAATTACAATAGGTTaGAACAATGTCTCCCTTCGACTTTATCCGCCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: FPERITGEITIG*NNVSLRLYPPL Trigger: TAAAGGCGGATAAAGTCGAAGGGAGACATTGTTCAAACCTATTGTAATTTCCCCAGTGATCCTTTCTGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| 3UTR CAA 72 bp | CCACAAGGAGTAAAATCAGACCCATGTGACACAATTTaGATCGCTTGTTGCGTTTCTTCTTCTTTTTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PQGVKSDPCDTI*IACCVSSSFSA Trigger: TGCTGAAAAAGAAGAAGAAACGCAACAAGCGATCAAAATTGTGTCACATGGGTCTGATTTTACTCCTTGTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR TCA 90 bp | TTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTAAAATCAGACCCATGTaGCACAATTTTGATCGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FTMHRQILLQVLRRHFRAKIRPM*HNFDRL Trigger: CAAGCGATCAAAATTGTGTCACATGGGTCTGATTTT...AGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| CDS-3UTR TCA 90 bp | ACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTTTAAAAATCAGACCCATGTaGCACAATTTTGATCGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: TMHRQILLQVLRRHFRALKIRPM*HNFDRL Trigger: CAAGCGATCAAAATTGTGTCACATGGGTCTGATTTT...TAAAGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
||
| CDS TCA 90 bp | TTCTCTCCGGCTCACAGAGTTCCTCTGAGAAGCCACGGGGCTCTGTaGGTAGACAAGGTTTTGCCAGTGTTGTGTGGCAGGATAATTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FSPAHRVPLRSHGAL*VDKVLPVLCGRIIS Trigger: GGAAATTATCCTGCCACACAACACTGGCAAAACCTTGTCTACTCACAGAGCCCCGTGGCTTCTCAGAGGAACTCTGTGAGCCGGAGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000175897.8 |
||
| CDS GCA 90 bp | TCTCTCCCCAATAGTACATGTGTCTTCCTCTCTGTCTTCTTGGTATaGAGGCATAATGCAGATTCGCCGCCTTTTCTCTCCGGCTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: SLPNSTCVFLSVFLV*RHNADSPPFLSGSQ Trigger: CTGTGAGCCGGAGAGAAAAGGCGGCGAATCTGCATTATGCCTGCATACCAAGAAGACAGAGAGGAAGACACATGTACTATTGGGGAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
||
| CDS-3UTR CAA 90 bp | CTTTGTATCCTGGGGCTTGTTCCCAGGTATCTGCACCCACCAGAAGGTTGTCAATCAAGCTGCAGGAATTaGTCAGGATGGTTGTTATTG | + |
|
Preference number: 5 (lower is better) Translates to: LCILGLVPRYLHPPEGCQSSCRN*SGWLLL Trigger: CAATAACAACCATCCTGACAAATTCCTGCAGCTTGA...TTGACAACCTTCTGGTGGGTGCAGATACCTGGGAACAAGCCCCAGGATACAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
||
| CDS-3UTR CAA 90 bp | GTTATCAAGGGGCACGAGAGGACGGCACTCTTTGGGAAGAAGAAGAAGAAAAGCGATGTCCAGAGAGATTaGTATGCACAGAATGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: VIKGHERTALFGKKKKKSDVQRD*YAQNAC Trigger: ACAAGCATTCTGTGCATACAAATCTCTCTGGACATC...GCTTTTCTTCTTCTTCTTCCCAAAGAGTGCCGTCCTCTCGTGCCCCTTGATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
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| CDS-3UTR CAA 90 bp | CGTTTCTTCTTCTTTTTCAGCAGAGTGTCGAAGCCAGGAGTGTACGTATCCCCCTCAGGATGGTTGTTATaGGGCAAAACAGAAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: RFFFFFSRVSKPGVYVSPSGWLL*GKTERS Trigger: GGATCTTTCTGTTTTGCCCAATAACAACCATCCTGA...GGGGGATACGTACACTCCTGGCTTCGACACTCTGCTGAAAAAGAAGAAGAAACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| CDS GCA 90 bp | GCCTGCAGAAGGGTTGAGCTCCTCATTAAAGACTTCACGTCAAGCTaGAGGAATTTGTCAGGATGGTTGTTATTGGGCAAAACAGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: ACRRVELLIKDFTSS*RNLSGWLLLGKTER Trigger: TCTTTCTGTTTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTCTTTAATGAGGAGCTCAACCCTTCTGCAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS-3UTR CAA 90 bp | CACACAGTTAGCAATGCGGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTTCACCATACAACGGGTaGTTCTTCATAACTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: HTVSNADVHNAQTDSLASSPYNG*FFITED Trigger: GTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGA...ACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCATTGCTAACTGTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | CAGAGAGGCCAACATAACACAAGCGACGCTCACATTCTAAAGGACAATGGTGTTTCACCATACAACGGGTaGTTCTTCATAACTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: QRGQHNTSDAHILKDNGVSPYNG*FFITED Trigger: GTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGA...AACACCATTGTCCTTTAGAATGTGAGCGTCGCTTGTGTTATGTTGGCCTCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | CTGTATGGAGTGACTTTTGATATTGTGAGCCCCTGGAATACCTGCTTCACAAAGTCACCATACAACGGGTaGTTCTTCATAACTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: LYGVTFDIVSPWNTCFTKSPYNG*FFITED Trigger: GTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGA...CTTTGTGAAGCAGGTATTCCAGGGGCTCACAATATCAAAAGTCACTCCATACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058633.9 ENSMUST00000165666.9 |
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| CDS-3UTR CAA 90 bp | TGCGGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTCACCATACAACGGGTaGTTCTTCATAACTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: CGRSQCTDRFSCKYLEGISPYNG*FFITED Trigger: GTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGA...AATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | ATGCGGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATGATGTCCAGAGAGATTaGTATGCACAGAATGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: MRTFTMHRQILLQVLRRHDVQRD*YAQNAC Trigger: ACAAGCATTCTGTGCATACAAATCTCTCTGGACATC...ATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCCGCAT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | CTGTATGGAGTGACTTTTGATATTGTGAGCCCCTGGAATACCTGCTTCACAAAGTCAAGCTGCAGGAATTaGTCAGGATGGTTGTTATTG | + |
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Preference number: 5 (lower is better) Translates to: LYGVTFDIVSPWNTCFTKSSCRN*SGWLLL Trigger: CAATAACAACCATCCTGACAAATTCCTGCAGCTTGA...CTTTGTGAAGCAGGTATTCCAGGGGCTCACAATATCAAAAGTCACTCCATACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS-3UTR CAA 90 bp | TCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTTGTATGCACAGAATGCTaGTCATACTCCTCAATGGTC | + |
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Preference number: 5 (lower is better) Translates to: SQCTDRFSCKYLEGILELVCTEC*SYSSMV Trigger: GACCATTGAGGAGTATGACAAGCATTCTGTGCATAC...AAGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | GGACGTTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGATGTCCAGAGAGATTaGTATGCACAGAATGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: GRSQCTDRFSCKYLEGILDVQRD*YAQNAC Trigger: ACAAGCATTCTGTGCATACAAATCTCTCTGGACATC...TAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAACGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | TTCACAATGCACAGACAGATTCTCTTGCAAGTACTTAGAAGGCATTTTAGAGCTGATGTCCAGAGAGATTaGTATGCACAGAATGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: FTMHRQILLQVLRRHFRADVQRD*YAQNAC Trigger: ACAAGCATTCTGTGCATACAAATCTCTCTGGACATC...AGCTCTAAAATGCCTTCTAAGTACTTGCAAGAGAATCTGTCTGTGCATTGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 |
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| CDS-3UTR CAA 90 bp | ACCAGAAGGTTGTCAATACACAAAGAAAACGACATCACCACTGAAGAAAAAGCTTCAGGATGGTTGTTATaGGGCAAAACAGAAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: TRRLSIHKENDITTEEKASGWLL*GKTERS Trigger: GGATCTTTCTGTTTTGCCCAATAACAACCATCCTGA...AGCTTTTTCTTCAGTGGTGATGTCGTTTTCTTTGTGTATTGACAACCTTCTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS TCA 72 bp | GCTCACAGAGTTCCTCTGAGAAGCCACGGGGCTCTGTaGGTAGACAAGGTTTTGCCAGTGTTGTGTGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AHRVPLRSHGAL*VDKVLPVLCGR Trigger: CCTGCCACACAACACTGGCAAAACCTTGTCTACTCACAGAGCCCCGTGGCTTCTCAGAGGAACTCTGTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000175897.8 |
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| CDS CCA 72 bp | TCCCCAATAGTACATGTGTCTTCCTCTCTGTCTTCTTaGTATGCAGGCATAATGCAGATTCGCCGCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SPIVHVSSSLSS*YAGIMQIRRLF Trigger: GAAAAGGCGGCGAATCTGCATTATGCCTGCATACCAAGAAGACAGAGAGGAAGACACATGTACTATTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| CDS GCA 72 bp | AATAGTACATGTGTCTTCCTCTCTGTCTTCTTGGTATaGAGGCATAATGCAGATTCGCCGCCTTTTCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: NSTCVFLSVFLV*RHNADSPPFLS Trigger: GGAGAGAAAAGGCGGCGAATCTGCATTATGCCTGCATACCAAGAAGACAGAGAGGAAGACACATGTACTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117064.8 |
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| CDS CAA 90 bp | AGGGTTGAGCTCCTCATTAAAGACTTCACGTCAAGCTGCAGGAATTaGTCAGGATGGTTGTTATTGGGCAAAACAGAAAGATCCATGTCC | + |
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Preference number: 6 (lower is better) Translates to: RVELLIKDFTSSCRN*SGWLLLGKTERSMS Trigger: GGACATGGATCTTTCTGTTTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTCTTTAATGAGGAGCTCAACCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS GCA 72 bp | AGGGTTGAGCTCCTCATTAAAGACTTCACGTCAAGCTaGAGGAATTTGTCAGGATGGTTGTTATTGGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RVELLIKDFTSS*RNLSGWLLLGK Trigger: TTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTCTTTAATGAGGAGCTCAACCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS CAA 90 bp | CTTTCTTCCATAGCTTCTTCCAAAGTTATGTCACCATACAACGGGTaGTTCTTCATAACTGAAGACATGGATGCTGGAGGACTCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: LSSIASSKVMSPYNG*FFITEDMDAGGLSG Trigger: TCCTGAGAGTCCTCCAGCATCCATGTCTTCAGTTATGAAGAACAACCCGTTGTATGGTGACATAACTTTGGAAGAAGCTATGGAAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000058633.9 ENSMUST00000118510.8 ENSMUST00000165666.9 ENSMUST00000175830.2 ENSMUST00000175897.8 |
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| CDS CCA 72 bp | AAAGACTTCACGTCAAGCTGCAGGAATTTGTCAGGATaGTTGTTATTGGGCAAAACAGAAAGATCCATGTCC | + |
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Preference number: 6 (lower is better) Translates to: KDFTSSCRNLSG*LLLGKTERSMS Trigger: GGACATGGATCTTTCTGTTTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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| CDS CAA 72 bp | CTCCTCATTAAAGACTTCACGTCAAGCTGCAGGAATTaGTCAGGATGGTTGTTATTGGGCAAAACAGAAAGA | + |
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Preference number: 6 (lower is better) Translates to: LLIKDFTSSCRN*SGWLLLGKTER Trigger: TCTTTCTGTTTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACGTGAAGTCTTTAATGAGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117064.8 ENSMUST00000165666.9 |
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