Pregenerated sensors for MIF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033307

Ensembl transcript IDs: ENSMUST00000038169.8

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGCACTGCGATGTACTGTGCGGGCTTGCCGGTGGCCTGCGCCAGCTaGTGGGTGAGCTCCGACAGAAACCCCTCTGGCACGGAGGCGCGG	+
Preference number: 5 (lower is better) Translates to: CTAMYCAGLPVACAS*WVSSDRNPSGTEAR Trigger: CCGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCGCACAGTACATCGCAGTGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 90 bp	ACTGCGATGTACTGTGCGGGCTTGCCGGTGGCCTGCGCCAGCTGCTaGGTGAGCTCCGACAGAAACCCCTCTGGCACGGAGGCGCGGGGA	+
Preference number: 5 (lower is better) Translates to: TAMYCAGLPVACASC*VSSDRNPSGTEARG Trigger: TCCCCGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCGCACAGTACATCGCAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS TCA 90 bp	CGATGTACTGTGCGGGCTTGCCGGTGGCCTGCGCCAGCTGCTGGGTaGGCTCCGACAGAAACCCCTCTGGCACGGAGGCGCGGGGAACAT	+
Preference number: 5 (lower is better) Translates to: RCTVRACRWPAPAAG*APTETPLARRRGEH Trigger: ATGTTCCCCGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCGCACAGTACATCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 90 bp	GGTGGCCTGCGCCAGCTGCTGGGTGAGCTCCGACAGAAACCCCTCTaGCACGGAGGCGCGGGGAACATTGGTGTTCACGATGAACATAGG	+
Preference number: 5 (lower is better) Translates to: GGLRQLLGELRQKPL*HGGAGNIGVHDEHR Trigger: CCTATGTTCATCGTGAACACCAATGTTCCCCGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 90 bp	CTGCAGAGGGCGCAGGGATCGTTCGTGCCGCTAAAAGTCATGAGCTaGTCCGGGACCACGTGCACTGCGATGTACTGTGCGGGCTTGCCG	+
Preference number: 5 (lower is better) Translates to: LQRAQGSFVPLKVMS*SGTTCTAMYCAGLP Trigger: CGGCAAGCCCGCACAGTACATCGCAGTGCACGTGGTCCCGGACCAGCTCATGACTTTTAGCGGCACGAACGATCCCTGCGCCCTCTGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS GCA 90 bp	CACACAGCAGCTTACTGTAGTTGCGGTTCTGGGCACCACCGATCTTaGCGATGCTGTGCAGGCTGCAGAGGGCGCAGGGATCGTTCGTGC	+
Preference number: 5 (lower is better) Translates to: HTAAYCSCGSGHHRS*RCCAGCRGRRDRSC Trigger: GCACGAACGATCCCTGCGCCCTCTGCAGCCTGCACAGCATCGGCAAGATCGGTGGTGCCCAGAACCGCAACTACAGTAAGCTGCTGTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS GCA 90 bp	TGTGCAGGCGATCGGACAGCAGGCCACACAGCAGCTTACTGTAGTTaGGGTTCTGGGCACCACCGATCTTGCCGATGCTGTGCAGGCTGC	+
Preference number: 5 (lower is better) Translates to: CAGDRTAGHTAAYCS*GSGHHRSCRCCAGC Trigger: GCAGCCTGCACAGCATCGGCAAGATCGGTGGTGCCCAGAACCGCAACTACAGTAAGCTGCTGTGTGGCCTGCTGTCCGATCGCCTGCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 72 bp	TACTGTGCGGGCTTGCCGGTGGCCTGCGCCAGCTGCTaGGTGAGCTCCGACAGAAACCCCTCTGGCACGGAG	+
Preference number: 6 (lower is better) Translates to: YCAGLPVACASC*VSSDRNPSGTE Trigger: CTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCGCACAGTA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS GCA 72 bp	ATGTACTGTGCGGGCTTGCCGGTGGCCTGCGCCAGCTaGTGGGTGAGCTCCGACAGAAACCCCTCTGGCACG	+
Preference number: 6 (lower is better) Translates to: MYCAGLPVACAS*WVSSDRNPSGT Trigger: CGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCGCACAGTACAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 72 bp	CGCCAGCTGCTGGGTGAGCTCCGACAGAAACCCCTCTaGCACGGAGGCGCGGGGAACATTGGTGTTCACGAT	+
Preference number: 6 (lower is better) Translates to: RQLLGELRQKPL*HGGAGNIGVHD Trigger: ATCGTGAACACCAATGTTCCCCGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS GCA 72 bp	TGTAGTTGCGGTTCTGGGCACCACCGATCTTGCCGATaGTGTGCAGGCTGCAGAGGGCGCAGGGATCGTTCG	+
Preference number: 6 (lower is better) Translates to: CSCGSGHHRSCR*CAGCRGRRDRS Trigger: CGAACGATCCCTGCGCCCTCTGCAGCCTGCACAGCATCGGCAAGATCGGTGGTGCCCAGAACCGCAACTACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS CCA 72 bp	GCGCAGGGATCGTTCGTGCCGCTAAAAGTCATGAGCTaGTCCGGGACCACGTGCACTGCGATGTACTGTGCG	+
Preference number: 6 (lower is better) Translates to: AQGSFVPLKVMS*SGTTCTAMYCA Trigger: CGCACAGTACATCGCAGTGCACGTGGTCCCGGACCAGCTCATGACTTTTAGCGGCACGAACGATCCCTGCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038169.8
CDS GCA 72 bp	GATCGGACAGCAGGCCACACAGCAGCTTACTGTAGTTaGGGTTCTGGGCACCACCGATCTTGCCGATGCTGT	+
Preference number: 6 (lower is better) Translates to: DRTAGHTAAYCS*GSGHHRSCRCC Trigger: ACAGCATCGGCAAGATCGGTGGTGCCCAGAACCGCAACTACAGTAAGCTGCTGTGTGGCCTGCTGTCCGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038169.8

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