RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MIEF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022412

Ensembl transcript IDs: ENSMUST00000023048.12, ENSMUST00000166030.2, ENSMUST00000228788.3, ENSMUST00000229138.2

Found 361 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCTTGAGGATCTTGAGGCAAAGAGACCGGCAGCCGGAGTCCGCCTaGTCCAAAGCCCGTAAGCGTGCTGTCTCAGCAGGGCGAAGGCTC +
Preference number: 1 (lower is better)
Translates to: ALRILRQRDRQPESA*SKARKRAVSAGRRL
Trigger: GAGCCTTCGCCCTGCTGAGACAGCACGCTTACGGGCTTTGGACCAGGCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 90 bp CAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCTaGCCTGTGGAGGTACCTATAGTGGCAAGGACAGGGGTCAGGTGG +
Preference number: 1 (lower is better)
Translates to: QESSEGAGLAWSCAL*PVEVPIVARTGVRW
Trigger: CCACCTGACCCCTGTCCTTGCCACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CCA 90 bp TCAGCCAACATGTCTGGAGACCAGTCAGCCTCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGCTGGCTGGCAGTGAGGTGGCCCAGA +
Preference number: 1 (lower is better)
Translates to: SANMSGDQSASSWAK*RMTLVSWLAVRWPR
Trigger: TCTGGGCCACCTCACTGCCAGCCAGCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTGGTCTCCAGACATGTTGGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 90 bp TGGGCCAAGTGGAGGATGACGTTGGTTAGCTGGCTGGCAGTGAGGTaGCCCAGAGCTGGAGTGGACTTGCATATGGCCTTGAGGATCTTG +
Preference number: 1 (lower is better)
Translates to: WAKWRMTLVSWLAVR*PRAGVDLHMALRIL
Trigger: CAAGATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCTGGGCCACCTCACTGCCAGCCAGCTAACCAACGTCATCCTCCACTTGGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 90 bp GGCTGGCCAGTTGATGGAGCCTGCCACCACTTTCTCAAAGGTGTCTaGCACTGTCTTTGGGGAGAGGTAGCCACCTACAACACATCGGTC +
Preference number: 1 (lower is better)
Translates to: GWPVDGACHHFLKGV*HCLWGEVATYNTSV
Trigger: GACCGATGTGTTGTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGGCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 90 bp GGCTCAGCCGCCACAGGTTGTCATACTGAGCTAACCGGTGTGGTCTaGCCACCAAGACAGTGTCACCAAGGGTTACTGATGGCAGGAAGT +
Preference number: 1 (lower is better)
Translates to: GSAATGCHTELTGVV*PPRQCHQGLLMAGS
Trigger: ACTTCCTGCCATCAGTAACCCTTGGTGACACTGTCTTGGTGGCCAGACCACACCGGTTAGCTCAGTATGACAACCTGTGGCGGCTGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp GGTGGGTGGGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTaGCCAGGACAATTACCAGCAAAACAGGAGGCACCTAGGGACCCT +
Preference number: 1 (lower is better)
Translates to: GGWGNRRDVNLISMK*PGQLPAKQEAPRDP
Trigger: AGGGTCCCTAGGTGCCTCCTGTTTTGCTGGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCCCACCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
3UTR GCA 90 bp GAAAGCAAATGTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTaGCTTCCCATGGCCTCCGTGGCTAAAGCAAGGCCACCTTCTACC +
Preference number: 1 (lower is better)
Translates to: ESKCGHWVSAGIPSF*LPMASVAKARPPST
Trigger: GGTAGAAGGTGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCACATTTGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CCA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATaGCCTCCGTGGCTAAAGCAAGGCCACCTTCTACCAGCAATTAAG +
Preference number: 1 (lower is better)
Translates to: VVTGFRLAFPPFAFP*PPWLKQGHLLPAIK
Trigger: CTTAATTGCTGGTAGAAGGTGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 90 bp CTACCAGCAATTAAGGGGAAACCAGCATCTTACAGGTGCTGCCTGTaGAGCCCCCACACCTGCCTTGTCTGTGTGACTCTGATGACCACA +
Preference number: 1 (lower is better)
Translates to: LPAIKGKPASYRCCL*SPHTCLVCVTLMTT
Trigger: TGTGGTCATCAGAGTCACACAGACAAGGCAGGTGTGGGGGCTTCACAGGCAGCACCTGTAAGATGCTGGTTTCCCCTTAATTGCTGGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 90 bp ACTCTGGGTTCTCACGACGAACCAGGAAGAAACCAGGGACATTCATaGTGGTGTCCTCCCCAGGTATGCATGACCACAGGTTCTGCTCCA +
Preference number: 1 (lower is better)
Translates to: TLGSHDEPGRNQGHS*WCPPQVCMTTGSAP
Trigger: TGGAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCATCATGAATGTCCCTGGTTTCTTCCTGGTTCGTCGTGAGAACCCAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 90 bp ACATTCATGATGGTGTCCTCCCCAGGTATGCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACAATGAGTTGGATATGGTCAGCCGTC +
Preference number: 1 (lower is better)
Translates to: TFMMVSSPGMHDHRF*SSTRGTMSWIWSAV
Trigger: GACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCATCATGAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 90 bp CAAAGGCTGATTTGCCAGGGCAGAGGCTCTTTGCCAGCCTCACCCTaGAAACCTAAATACTGTCTTATTCCTCTGCAGAGCTCAGCCTGG +
Preference number: 1 (lower is better)
Translates to: QRLICQGRGSLPASP*KPKYCLIPLQSSAW
Trigger: CCAGGCTGAGCTCTGCAGAGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCCCTGGCAAATCAGCCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CCA 90 bp TTGCTTAGGGTAGGGAGAGGAGATAAGCTTGTTTTCCAGGAACCATaGGCAAAGGCTGATTTGCCAGGGCAGAGGCTCTTTGCCAGCCTC +
Preference number: 1 (lower is better)
Translates to: LLRVGRGDKLVFQEP*AKADLPGQRLFASL
Trigger: GAGGCTGGCAAAGAGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTCTCCCTACCCTAAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 90 bp CAGGTATGCATGACCACAGGTTCTGCTCCAGCACAAGGGGGACAATaGGTTGGATATGGTCAGCCGTCACCACCTGCAGATCATCATAGA +
Preference number: 1 (lower is better)
Translates to: QVCMTTGSAPAQGGQ*VGYGQPSPPADHHR
Trigger: TCTATGATGATCTGCAGGTGGTGACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATGCATACCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp GAAGAAACCAGGGACATTCATGATGGTGTCCTCCCCAGGTATGCATaGCCACAGGTTCTGCTCCAGCACAAGGGGGACAATGAGTTGGAT +
Preference number: 1 (lower is better)
Translates to: EETRDIHDGVLPRYA*PQVLLQHKGDNELD
Trigger: ATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCATCATGAATGTCCCTGGTTTCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 90 bp GAGGAGATAAGCTTGTTTTCCAGGAACCATGGGCAAAGGCTGATTTaGCAGGGCAGAGGCTCTTTGCCAGCCTCACCCTGGAAACCTAAA +
Preference number: 1 (lower is better)
Translates to: EEISLFSRNHGQRLI*QGRGSLPASPWKPK
Trigger: TTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR GCA 90 bp TCTTTGGGGAGAGGTAGCCACCTACAACACATCGGTCCCAATAACTaGTACCACGAGGAAAGTACTCTGGGTTCTCACGACGAACCAGGA +
Preference number: 1 (lower is better)
Translates to: SLGRGSHLQHIGPNN*YHEESTLGSHDEPG
Trigger: TCCTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGATGTGTTGTAGGTGGCTACCTCTCCCCAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp ACTGATGGCAGGAAGTCAATGACAAGATGTTTGTCCTTCTCATACTaGACTTCTAGTGTCAGGGCCTCTGGGGGTGGTGCTGGTCGGATC +
Preference number: 1 (lower is better)
Translates to: TDGRKSMTRCLSFSY*TSSVRASGGGAGRI
Trigger: GATCCGACCAGCACCACCCCCAGAGGCCCTGACACTAGAAGTTCAGTATGAGAAGGACAAACATCTTGTCATTGACTTCCTGCCATCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp TGCCTTGTCTGTGTGACTCTGATGACCACACATAGAAACAAACAGTaGGACACAGGCTCTCCAAATCAGCTTCAGCGTGCTAGCCCTGAG +
Preference number: 1 (lower is better)
Translates to: CLVCVTLMTTHRNKQ*DTGSPNQLQRASPE
Trigger: CTCAGGGCTAGCACGCTGAAGCTGATTTGGAGAGCCTGTGTCTCACTGTTTGTTTCTATGTGTGGTCATCAGAGTCACACAGACAAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 90 bp GCTCCTATATGGCCCCAGCCAAGACAGGACACAAAGATTAGTGACTaGTTCCATTCTACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTG +
Preference number: 1 (lower is better)
Translates to: APIWPQPRQDTKISD*FHSTSRQVTGRQVV
Trigger: CACAACTTGCCTTCCAGTCACTTGCCTGCTGGTAGAATGGAATCAGTCACTAATCTTTGTGTCCTGTCTTGGCTGGGGCCATATAGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR TCA 90 bp TTCCATCCAAGCATCCCAGAGCATGTGGCCGCCTCCCATACTTTATaGCAAAGAATGACAGCAAAGAAGGCATGCCCAGCTAATCCACAA +
Preference number: 1 (lower is better)
Translates to: FHPSIPEHVAASHTL*QRMTAKKACPANPQ
Trigger: TTGTGGATTAGCTGGGCATGCCTTCTTTGCTGTCATTCTTTGTCATAAAGTATGGGAGGCGGCCACATGCTCTGGGATGCTTGGATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 90 bp TTATCAAGTCATAATGCCAAGGAAATGTACCTTGGTAGAAGGCTCTaGACACACAGTGCATCCTGCTCTCAGATCTCCCAGCCTGAAGCG +
Preference number: 1 (lower is better)
Translates to: LSSHNAKEMYLGRRL*THSASCSQISQPEA
Trigger: CGCTTCAGGCTGGGAGATCTGAGAGCAGGATGCACTGTGTGTTCAGAGCCTTCTACCAAGGTACATTTCCTTGGCATTATGACTTGATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CCA 90 bp TACAACACATCGGTCCCAATAACTGCTACCACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAGGAAGAAACCAGGGACATTCATGAT +
Preference number: 1 (lower is better)
Translates to: YNTSVPITATTRKVL*VLTTNQEETRDIHD
Trigger: ATCATGAATGTCCCTGGTTTCTTCCTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGATGTGTTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp CCACCAAGACAGTGTCACCAAGGGTTACTGATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCTCATACTGAACTTCTAGTGTCAGGG +
Preference number: 1 (lower is better)
Translates to: PPRQCHQGLLMAGSQ*QDVCPSHTELLVSG
Trigger: CCCTGACACTAGAAGTTCAGTATGAGAAGGACAAACATCTTGTCATTGACTTCCTGCCATCAGTAACCCTTGGTGACACTGTCTTGGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 90 bp ATTCCTCTGCAGAGCTCAGCCTGGAAACATGCAATCACTCTTCTGTaGCATCAACTACAGGCAACATCTTCATTAGGCAAATGTACTCTG +
Preference number: 1 (lower is better)
Translates to: IPLQSSAWKHAITLL*HQLQATSSLGKCTL
Trigger: CAGAGTACATTTGCCTAATGAAGATGTTGCCTGTAGTTGATGTCACAGAAGAGTGATTGCATGTTTCCAGGCTGAGCTCTGCAGAGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 90 bp CTAAGTTCACTAACATATGGCTGTGATTTAGGACATTTGGAATCTTaGGCATCTTCAAGTTCTGGGGGTTCATTTGCACTCTGCCTGGCA +
Preference number: 1 (lower is better)
Translates to: LSSLTYGCDLGHLES*ASSSSGGSFALCLA
Trigger: TGCCAGGCAGAGTGCAAATGAACCCCCAGAACTTGAAGATGCTCAAGATTCCAAATGTCCTAAATCACAGCCATATGTTAGTGAACTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 90 bp CTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCTTGTCATaGACGGAAGAAAAAGGACACATAGAAATGACATTCCAAATGTCC +
Preference number: 1 (lower is better)
Translates to: LEWQIRTRVTVSLLS*TEEKGHIEMTFQMS
Trigger: GGACATTTGGAATGTCATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CAA 90 bp AGGTGGCCCAGAGCTGGAGTGGACTTGCATATGGCCTTGAGGATCTaGAGGCAAAGAGACCGGCAGCCGGAGTCCGCCTGGTCCAAAGCC +
Preference number: 2 (lower is better)
Translates to: RWPRAGVDLHMALRI*RQRDRQPESAWSKA
Trigger: GGCTTTGGACCAGGCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCTGGGCCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCCACCTAGGGACCCTGTaGGGCACCAACCACGTAGCC +
Preference number: 2 (lower is better)
Translates to: TNLPRSQVREQGWHGHVPHLGTL*GTNHVA
Trigger: GGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTG...GGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp AAGGACAGGGGTCAGGTGGGAGGTTCTGGCCCTGGGTATGTTCCTGCTCTAAGGCAGTCAGCCTCCTCCTaGGCCAAGTGGAGGATGACG +
Preference number: 2 (lower is better)
Translates to: KDRGQVGGSGPGYVPALRQSASS*AKWRMT
Trigger: CGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTG...CCTTAGAGCAGGAACATACCCAGGGCCAGAACCTCCCACCTGACCCCTGTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp CTTGCATATGGCCTTGAGGATCTTGAGGCAAAGAGACCGGCAGCCGGAGTCCGCCTATGGCTGGCCAGTTaGTGGAGCCTGCCACCACTT +
Preference number: 2 (lower is better)
Translates to: LAYGLEDLEAKRPAAGVRLWLAS*WSLPPL
Trigger: AAGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAG...GCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCATGACGTTGGTTAGCTaGCTGGCAGTGAGGTGGCCC +
Preference number: 2 (lower is better)
Translates to: TNLPRSQVREQGWHGHVPMTLVS*LAVRWP
Trigger: GGGCCACCTCACTGCCAGCCAGCTAACCAACGTCAT...GGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATAAAACACCCAAAGGCTaGGGCCAGCACTCCACACCC +
Preference number: 2 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHKTPKG*GQHSTP
Trigger: GGGTGTGGAGTGCTGGCCTCAGCCTTTGGGTGTTTT...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GGAGCAGGGCTGGCATGGTCATGTGCCCTCTGGCCTGTGGAGGTACCTATAGTGCACAGGTTGTCATACTaGGCTAACCGGTGTGGTCTG +
Preference number: 2 (lower is better)
Translates to: GAGLAWSCALWPVEVPIVHRLSY*ANRCGL
Trigger: CAGACCACACCGGTTAGCTCAGTATGACAACCTGTG...CACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATGGCCTCCGAGCAAATGTGGTCACTaGGTTTCGGCTGGCATTCCC +
Preference number: 2 (lower is better)
Translates to: VVTGFRLAFPPFAFPWPPSKCGH*VSAGIP
Trigger: GGGAATGCCAGCCGAAACCCAGTGACCACATTTGCT...CGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATGGCCTCCGCAGCAGCAAGAACCTTaGACTGTCTATGCCAGCCCT +
Preference number: 2 (lower is better)
Translates to: VVTGFRLAFPPFAFPWPPQQQEP*TVYASP
Trigger: AGGGCTGGCATAGACAGTCCAAGGTTCTTGCTGCTG...CGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GGAGCAGGGCTGGCATGGTCATGTGCCCTCTGGCCTGTGGAGGTACCTATAGTGACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAG +
Preference number: 2 (lower is better)
Translates to: GAGLAWSCALWPVEVPIVTRKVL*VLTTNQ
Trigger: CTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGT...CACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GGCAGAGGCTCTTTGCCAGCCTCACCCTGGAAACCTAAATACTGTCTTATTCCTCACCTAGGGACCCTGTaGGGCACCAACCACGTAGCC +
Preference number: 2 (lower is better)
Translates to: GRGSLPASPWKPKYCLIPHLGTL*GTNHVA
Trigger: GGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTG...AGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAACACCTAGGGACCCTGTaGGGCACCAACCACGTAGCC +
Preference number: 2 (lower is better)
Translates to: RREQTRGQGAEPDIADRKHLGTL*GTNHVA
Trigger: GGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTG...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp AGCCTGGTACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTAAAACACCCAAAGGCTaGGGCCAGCACTCCACACCC +
Preference number: 2 (lower is better)
Translates to: SLVQGSLCSQGPPHLPWLKTPKG*GQHSTP
Trigger: GGGTGTGGAGTGCTGGCCTCAGCCTTTGGGTGTTTT...AAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTACCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
3UTR-3UTR GCA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTGGCCTCTGGGGGTGGTaGTGGTCGGATCACATAGTC +
Preference number: 2 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFGLWGW*WSDHIV
Trigger: GACTATGTGATCCGACCAGCACCACCCCCAGAGGCC...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTGACTGGGCCTTTACCTaGCCTACGTCTGCAGCAGCA +
Preference number: 2 (lower is better)
Translates to: SGTANWVFQQRGKQGRASDWAFT*PTSAAA
Trigger: TGCTGCTGCAGACGTAGGGCAGGTAAAGGCCCAGTC...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATGGCCTCCGGTTTTCCAGGAACCATaGGCAAAGGCTGATTTGCCA +
Preference number: 2 (lower is better)
Translates to: VVTGFRLAFPPFAFPWPPVFQEP*AKADLP
Trigger: TGGCAAATCAGCCTTTGCCCATGGTTCCTGGAAAAC...CGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTACCATGGGCAAAGGCTaGTTTGCCAGGGCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFTMGKG*FARAEA
Trigger: AGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGT...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp TGGTTTTGCAGCATTCTACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTCTCCCCAGGTATGCATaGCCACAGGTTCTGCTCCAG +
Preference number: 2 (lower is better)
Translates to: WFCSILPALPPTGSSKNLLPRYA*PQVLLQ
Trigger: CTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAG...AAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGTAGAATGCTGCAAAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp CTTGCATATGGCCTTGAGGATCTTGAGGCAAAGAGACCGGCAGCCGGAGTCCGCGATCATCATAGAGGCTaGCACTCAAGTACATGTCCC +
Preference number: 2 (lower is better)
Translates to: LAYGLEDLEAKRPAAGVRDHHRG*HSSTCP
Trigger: GGGACATGTACTTGAGTGGCAGCCTCTATGATGATC...GCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACA +
Preference number: 2 (lower is better)
Translates to: SGTANWVFQQRGKQGRASHDHRF*SSTRGT
Trigger: TGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATG...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCGCCTGGCATCCTAAATaGAATCAGTTCAGAGATGGC +
Preference number: 2 (lower is better)
Translates to: TNLPRSQVREQGWHGHVPAWHPK*NQFRDG
Trigger: GCCATCTCTGAACTGATTCCATTTAGGATGCCAGGC...GGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR TCA 90 bp AGCCCCCACACCTGCCTTGTCTGTGTGACTCTGATGACCACACATAGAAACAAAACCATGGGCAAAGGCTaGTTTGCCAGGGCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: SPHTCLVCVTLMTTHRNKTMGKG*FARAEA
Trigger: AGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGT...TTTGTTTCTATGTGTGGTCATCAGAGTCACACAGACAAGGCAGGTGTGGGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATACAAGAAAGCAAATGTaGTCACTGGGTTTCGGCTGG +
Preference number: 2 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHTRKQM*SLGFGW
Trigger: CCAGCCGAAACCCAGTGACCACATTTGCTTTCTTGT...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCGGAGCAGGGCTGGCATaGTCATGTGCCCTCTGGCCT +
Preference number: 2 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGGAGLA*SCALWP
Trigger: AGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCC...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 90 bp TCCAGGAACCATGGGCAAAGGCTGATTTGCCAGGGCAGAGGCTCTTaGCCAGCCTCACCCTGGAAACCTAAATACTGTCTTATTCCTCTG +
Preference number: 2 (lower is better)
Translates to: SRNHGQRLICQGRGS*PASPWKPKYCLIPL
Trigger: CAGAGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGTTCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp CATCAACTACAGGCAACATCTTCATTAGGCAAATGTACTCTGGGGACAAGAGCCTACAGGTGCTGCCTGTaGAGCCCCCACACCTGCCTT +
Preference number: 2 (lower is better)
Translates to: HQLQATSSLGKCTLGTRAYRCCL*SPHTCL
Trigger: AAGGCAGGTGTGGGGGCTTCACAGGCAGCACCTGTA...GGCTCTTGTCCCCAGAGTACATTTGCCTAATGAAGATGTTGCCTGTAGTTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATAACTCGTCTATTTCTTaGGGGGTGAGCTCTGCAAAT +
Preference number: 2 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHNSSIS*GVSSAN
Trigger: ATTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTT...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATAAGTGGGGAGCACAGTaGTTGGTTACAAAAATAGGG +
Preference number: 2 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHKWGAQ*LVTKIG
Trigger: CCCTATTTTTGTAACCAAGCACTGTGCTCCCCACTT...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp TGGTTTTGCAGCATTCTACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTTGTCCTCCCCAGGTATaGATGACCACAGGTTCTGCT +
Preference number: 2 (lower is better)
Translates to: WFCSILPALPPTGSSKNLCPPQV*MTTGSA
Trigger: AGCAGAACCTGTGGTCATGCATACCTGGGGAGGACA...AAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGTAGAATGCTGCAAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp CAGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCGCCTGGCATCCTAAATaGAATCAGTTCAGAGATGGC +
Preference number: 2 (lower is better)
Translates to: QWHSQLGLSTKREAGQSIAWHPK*NQFRDG
Trigger: GCCATCTCTGAACTGATTCCATTTAGGATGCCAGGC...GATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTAGAAAGGCAGAGCAGTaGCACAGCCAACTGGGTCTT +
Preference number: 2 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFRKAEQ*HSQLGL
Trigger: AAGACCCAGTTGGCTGTGCCACTGCTCTGCCTTTCT...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp TTCTACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTGGACTTGGCCTCAGAGACTGCATGCTGATATTCTaGACACTCAGTCTCAGGGGC +
Preference number: 2 (lower is better)
Translates to: FYQQASDWKASCGLGLRDCMLIF*TLSLRG
Trigger: GCCCCTGAGACTGAGTGTCCAGAATATCAGCATGCA...GTCTCTGAGGCCAAGTCCACAACTTGCCTTCCAGTCACTTGCCTGCTGGTAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp TGGCCATATATAGCAATCTTAGCAGCAAGGTGGGAAGCCCCAACTCTTTTCTGTGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGA +
Preference number: 2 (lower is better)
Translates to: WPYIAILAARWEAPTLFCAYQAA*PAGSSG
Trigger: TCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGC...ACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GGCAGAGGCTCTTTGCCAGCCTCACCCTGGAAACCTAAATACTGTCTTATTCCTAACCAGGGACATTCATaGTGGTGTCCTCCCCAGGTA +
Preference number: 2 (lower is better)
Translates to: GRGSLPASPWKPKYCLIPNQGHS*WCPPQV
Trigger: TACCTGGGGAGGACACCATCATGAATGTCCCTGGTT...AGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp CACTCAGTCTCAGGGGCTTGTAACCTCCTAGCCTGGTACAAGGGTCACTGTGTTACTGTCTTATTCCTCTaGAGAGCTCAGCCTGGAAAC +
Preference number: 2 (lower is better)
Translates to: HSVSGACNLLAWYKGHCVTVLFL*RAQPGN
Trigger: GTTTCCAGGCTGAGCTCTGCAGAGGAATAAGACAGT...AACACAGTGACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
3UTR-3UTR GCA 90 bp CATCAACTACAGGCAACATCTTCATTAGGCAAATGTACTCTGGGGACAAGAGCCAGGGCAGAGGCTCTTTaGCAGCCTCACCCTGGAAAC +
Preference number: 2 (lower is better)
Translates to: HQLQATSSLGKCTLGTRARAEAL*QPHPGN
Trigger: GTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCCCT...GGCTCTTGTCCCCAGAGTACATTTGCCTAATGAAGATGTTGCCTGTAGTTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGAGGCATTCCCTCCTTTTaGCTTCCCATGGCCTCCGTG +
Preference number: 2 (lower is better)
Translates to: SHAAEDADFTSSISLLQGGIPSF*LPMASV
Trigger: CACGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCC...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
3UTR-3UTR GCA 90 bp AGCCTGGTACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTACAGCAAAGAAGGCATaGCCAGCTAATCCACAAACC +
Preference number: 2 (lower is better)
Translates to: SLVQGSLCSQGPPHLPWLTAKKA*PANPQT
Trigger: GGTTTGTGGATTAGCTGGGCATGCCTTCTTTGCTGT...AAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTACCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCCCCAACTCTTTTCTGTaGGTCTTATCTATGTACTCT +
Preference number: 2 (lower is better)
Translates to: TNLPRSQVREQGWHGHVPPNSFL*VLSMYS
Trigger: AGAGTACATAGATAAGACCCACAGAAAAGAGTTGGG...GGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp GCTCAGACAGCGAGCAGTAGAGGGTATATCCCAACTCGTCTATTTCTTGAGGGGACAATGAGTTGGATATaGTCAGCCGTCACCACCTGC +
Preference number: 2 (lower is better)
Translates to: AQTASSRGYIPTRLFLEGTMSWI*SAVTTC
Trigger: GCAGGTGGTGACGGCTGACCATATCCAACTCATTGT...CCCCTCAAGAAATAGACGAGTTGGGATATACCCTCTACTGCTCGCTGTCTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GGAGCAGGGCTGGCATGGTCATGTGCCCTCTGGCCTGTGGAGGTACCTATAGTGAACACAATACTAGAATaGCAAATCAGAACCAGAGTT +
Preference number: 2 (lower is better)
Translates to: GAGLAWSCALWPVEVPIVNTILE*QIRTRV
Trigger: AACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTT...CACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp AGCCCCCACACCTGCCTTGTCTGTGTGACTCTGATGACCACACATAGAAACAAACAAGAGCCACCAGGGTaGCCAAGAAAGAGAAAGATA +
Preference number: 2 (lower is better)
Translates to: SPHTCLVCVTLMTTHRNKQEPPG*PRKRKI
Trigger: TATCTTTCTCTTTCTTGGTCACCCTGGTGGCTCTTG...TTTGTTTCTATGTGTGGTCATCAGAGTCACACAGACAAGGCAGGTGTGGGGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGGCAATCACTCTTCTGTaGCATCAACTACAGGCAACA +
Preference number: 2 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQAITLL*HQLQAT
Trigger: TGTTGCCTGTAGTTGATGTCACAGAAGAGTGATTGC...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp TTCTACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTGGACTTGGCCTCAGAGACGCCTCCCATACTTTATaGCAAAGAATGACAGCAAAG +
Preference number: 2 (lower is better)
Translates to: FYQQASDWKASCGLGLRDASHTL*QRMTAK
Trigger: CTTTGCTGTCATTCTTTGTCATAAAGTATGGGAGGC...GTCTCTGAGGCCAAGTCCACAACTTGCCTTCCAGTCACTTGCCTGCTGGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR GCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAGTGGGGAGCACAGTaGTTGGTTACAAAAATAGGG +
Preference number: 2 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQKWGAQ*LVTKIG
Trigger: CCCTATTTTTGTAACCAAGCACTGTGCTCCCCACTT...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp CAGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTCTAAAATCTGGTTTTaGAGCATTCTACCAGCTCTC +
Preference number: 2 (lower is better)
Translates to: QWHSQLGLSTKREAGQSISKIWF*SILPAL
Trigger: GAGAGCTGGTAGAATGCTGCAAAACCAGATTTTAGA...GATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR GCA 90 bp CTTAGGGTAGGGAGAGGAGATAAGCTTGTTTTCCAGGAACCATGGGCAAAGGCTTTTCTCAAAGGTGTCTaGCACTGTCTTTGGGGAGAG +
Preference number: 2 (lower is better)
Translates to: LRVGRGDKLVFQEPWAKAFLKGV*HCLWGE
Trigger: CTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAA...AGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTCTCCCTACCCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp TGGTTTTGCAGCATTCTACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTTCAATCTCATCAGCATaGAGTGACCAGGACAATTAC +
Preference number: 2 (lower is better)
Translates to: WFCSILPALPPTGSSKNLSISSA*SDQDNY
Trigger: GTAATTGTCCTGGTCACTTCATGCTGATGAGATTGA...AAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGTAGAATGCTGCAAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGTCAATCTCATCAGCATaGAGTGACCAGGACAATTAC +
Preference number: 2 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRSISSA*SDQDNY
Trigger: GTAATTGTCCTGGTCACTTCATGCTGATGAGATTGA...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
3UTR-3UTR GCA 90 bp AGCCTGGTACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTTCTAAAATCTGGTTTTaGAGCATTCTACCAGCTCTC +
Preference number: 2 (lower is better)
Translates to: SLVQGSLCSQGPPHLPWLSKIWF*SILPAL
Trigger: GAGAGCTGGTAGAATGCTGCAAAACCAGATTTTAGA...AAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTACCAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR GCA 90 bp TTTGTGTCACCCTCATTAGGAACAACACAGCCACAGAGTGCATCACCAGAATCACCAGTTGATGGAGCCTaGCACCACTTTCTCAAAGGT +
Preference number: 2 (lower is better)
Translates to: FVSPSLGTTQPQSASPESPVDGA*HHFLKG
Trigger: ACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGG...TGATTCTGGTGATGCACTCTGTGGCTGTGTTGTTCCTAATGAGGGTGACACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCAGGACAGGGGTCAGGTaGGAGGTTCTGGCCCTGGGT +
Preference number: 2 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFRTGVR*EVLALG
Trigger: ACCCAGGGCCAGAACCTCCCACCTGACCCCTGTCCT...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp CATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGGTACATGTCCCGAAGTaGCATATCAGGCAGCTTGGC +
Preference number: 2 (lower is better)
Translates to: HRNDIPNVPSPTHRMITWVHVPK*HIRQLG
Trigger: GCCAAGCTGCCTGATATGCCACTTCGGGACATGTAC...CCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GATGTTTTCAGCTCCTACTTTGTTTTTATTAACTACCAGGAGGGCATGTTTCAGGAGGGACCCTATGGCTaGCCAGTTGATGGAGCCTGC +
Preference number: 2 (lower is better)
Translates to: DVFSSYFVFINYQEGMFQEGPYG*PVDGAC
Trigger: GCAGGCTCCATCAACTGGCCAGCCATAGGGTCCCTC...CTGAAACATGCCCTCCTGGTAGTTAATAAAAACAAAGTAGGAGCTGAAAACATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp AATGGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGTCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGC +
Preference number: 2 (lower is better)
Translates to: NGISSEMAAEESYNTSDRSSWAK*RMTLVS
Trigger: GCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGA...CCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CAA 90 bp TTCCATTCTACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTGGACTaGGCCTCAGAGACCAAGGGTTTAAAAGACTACAAGGTGATCAAA +
Preference number: 2 (lower is better)
Translates to: FHSTSRQVTGRQVVD*ASETKGLKDYKVIK
Trigger: TTTGATCACCTTGTAGTCTTTTAAACCCTTGGTCTCTGAGGCCAAGTCCACAACTTGCCTTCCAGTCACTTGCCTGCTGGTAGAATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR TCA 90 bp CATCAACTACAGGCAACATCTTCATTAGGCAAATGTACTCTGGGGACAAGAGCCCAAGAGCCACCAGGGTaGCCAAGAAAGAGAAAGATA +
Preference number: 2 (lower is better)
Translates to: HQLQATSSLGKCTLGTRAQEPPG*PRKRKI
Trigger: TATCTTTCTCTTTCTTGGTCACCCTGGTGGCTCTTG...GGCTCTTGTCCCCAGAGTACATTTGCCTAATGAAGATGTTGCCTGTAGTTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp CTTAGGGTAGGGAGAGGAGATAAGCTTGTTTTCCAGGAACCATGGGCAAAGGCTATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCT +
Preference number: 2 (lower is better)
Translates to: LRVGRGDKLVFQEPWAKAMAGSQ*QDVCPS
Trigger: AGAAGGACAAACATCTTGTCATTGACTTCCTGCCAT...AGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTCTCCCTACCCTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAACAGCAGCAAGAACCTTaGACTGTCTATGCCAGCCCT +
Preference number: 2 (lower is better)
Translates to: GISSEMAAEESYNTSDRKQQQEP*TVYASP
Trigger: AGGGCTGGCATAGACAGTCCAAGGTTCTTGCTGCTG...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp AGGATAAAGGTTCTCTGGGCCTTAGTAGCTAAGCTGCTCCTATATGGCCCCAGCCTCCTCTCTAAAATCTaGTTTTGCAGCATTCTACCA +
Preference number: 2 (lower is better)
Translates to: RIKVLWALVAKLLLYGPSLLSKI*FCSILP
Trigger: TGGTAGAATGCTGCAAAACCAGATTTTAGAGAGGAG...GCTGGGGCCATATAGGAGCAGCTTAGCTACTAAGGCCCAGAGAACCTTTATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp GTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTGTCTGCCACTGTCTTTaGGGAGAGGTAGCCACCTAC +
Preference number: 2 (lower is better)
Translates to: VQRWQLRSLIILLTGNLTVCHCL*GEVATY
Trigger: GTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGAC...AGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp AGGATAAAGGTTCTCTGGGCCTTAGTAGCTAAGCTGCTCCTATATGGCCCCAGCAAGAAAGATAAAGCCTaGCAAGAAAGCAAATGTGGT +
Preference number: 2 (lower is better)
Translates to: RIKVLWALVAKLLLYGPSKKDKA*QESKCG
Trigger: ACCACATTTGCTTTCTTGTCAGGCTTTATCTTTCTT...GCTGGGGCCATATAGGAGCAGCTTAGCTACTAAGGCCCAGAGAACCTTTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
3UTR-3UTR CCA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCGGGAGGTTCTGGCCCTaGGTATGTTCCTGCTCTAAG +
Preference number: 2 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFGRFWP*VCSCSK
Trigger: CTTAGAGCAGGAACATACCCAGGGCCAGAACCTCCC...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp AGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTCCTCTCGCAATCACTCTTCTGTaGCATCAACTACAGGCAACA +
Preference number: 2 (lower is better)
Translates to: RWQLRSLIILLTGNLTPLAITLL*HQLQAT
Trigger: TGTTGCCTGTAGTTGATGTCACAGAAGAGTGATTGC...GAGAGGAGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GAAAAAGGACACATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGACATAGAAACAAACAGTaGGACACAGGCTCTCCAAAT +
Preference number: 2 (lower is better)
Translates to: EKGHIEMTFQMSLPPPIGHRNKQ*DTGSPN
Trigger: ATTTGGAGAGCCTGTGTCTCACTGTTTGTTTCTATG...TCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATGTGTCCTTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp CATCACCAGAATCACACTGATGGAGAGGTAGTAAGAACAGATAAAGAAAGACCTGTCAGCCTCTTGTCATaGACGGAAGAAAAAGGACAC +
Preference number: 2 (lower is better)
Translates to: HHQNHTDGEVVRTDKERPVSLLS*TEEKGH
Trigger: GTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGAC...AGGTCTTTCTTTATCTGTTCTTACTACCTCTCCATCAGTGTGATTCTGGTGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCCCCAACTCTTTTCTGTaGGTCTTATCTATGTACTCT +
Preference number: 2 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGPNSFL*VLSMYS
Trigger: AGAGTACATAGATAAGACCCACAGAAAAGAGTTGGG...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR CCA 90 bp GAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATTTGCCAGCCTCACCCTaGAAACCTAAATACTGTCTT +
Preference number: 2 (lower is better)
Translates to: ESVQRWQLRSLIILLTGNLPASP*KPKYCL
Trigger: AAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAA...ATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR CCA 90 bp GATGTTTTCAGCTCCTACTTTGTTTTTATTAACTACCAGGAGGGCATGTTTCAGTTGCCAGCCTCACCCTaGAAACCTAAATACTGTCTT +
Preference number: 2 (lower is better)
Translates to: DVFSSYFVFINYQEGMFQLPASP*KPKYCL
Trigger: AAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAA...CTGAAACATGCCCTCCTGGTAGTTAATAAAAACAAAGTAGGAGCTGAAAACATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp TCTAAGAGGTTCCTGCTTATAAGATGGCCAAGTCATGATCTTGGATTGCAAAGCAAGAAAGATAAAGCCTaGCAAGAAAGCAAATGTGGT +
Preference number: 2 (lower is better)
Translates to: SKRFLLIRWPSHDLGLQSKKDKA*QESKCG
Trigger: ACCACATTTGCTTTCTTGTCAGGCTTTATCTTTCTT...GCTTTGCAATCCAAGATCATGACTTGGCCATCTTATAAGCAGGAACCTCTTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR-3UTR TCA 90 bp GATGTTTTCAGCTCCTACTTTGTTTTTATTAACTACCAGGAGGGCATGTTTCAGAAGATGGCCAAGTCATaGTCTTGGATTGCAAAGCAT +
Preference number: 2 (lower is better)
Translates to: DVFSSYFVFINYQEGMFQKMAKS*SWIAKH
Trigger: ATGCTTTGCAATCCAAGATCATGACTTGGCCATCTT...CTGAAACATGCCCTCCTGGTAGTTAATAAAAACAAAGTAGGAGCTGAAAACATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CCA 72 bp ATCTTGAGGCAAAGAGACCGGCAGCCGGAGTCCGCCTaGTCCAAAGCCCGTAAGCGTGCTGTCTCAGCAGGG +
Preference number: 3 (lower is better)
Translates to: ILRQRDRQPESA*SKARKRAVSAG
Trigger: CCCTGCTGAGACAGCACGCTTACGGGCTTTGGACCAGGCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CAA 90 bp GGAGCAGGGCTGGCATGGTCATGTGCCCTCTGGCCTGTGGAGGTACCTATAGTGCCTATGGCTGGCCAGTaGATGGAGCCTGCCACCACT +
Preference number: 3 (lower is better)
Translates to: GAGLAWSCALWPVEVPIVPMAGQ*MEPATT
Trigger: AGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAGG...CACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 72 bp GCAGGGCGAAGGCTCAGCCGCCACAGGTTGTCATACTaGGCTAACCGGTGTGGTCTGGCCACCAAGACAGTG +
Preference number: 3 (lower is better)
Translates to: AGRRLSRHRLSY*ANRCGLATKTV
Trigger: CACTGTCTTGGTGGCCAGACCACACCGGTTAGCTCAGTATGACAACCTGTGGCGGCTGAGCCTTCGCCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp AGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCTaGCCTGTGGAGGTACCTATAGTGGCAAGGACAGGG +
Preference number: 3 (lower is better)
Translates to: SEGAGLAWSCAL*PVEVPIVARTG
Trigger: CCCTGTCCTTGCCACTATAGGTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCCCTCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CCA 72 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTaGCATGGTCATGTGCCCTCTGGCCTGTGGAGGTAC +
Preference number: 3 (lower is better)
Translates to: TNLPRSQVREQG*HGHVPSGLWRY
Trigger: GTACCTCCACAGGCCAGAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CCA 72 bp ATGTCTGGAGACCAGTCAGCCTCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGCTGGCTGGCAGTGAGG +
Preference number: 3 (lower is better)
Translates to: MSGDQSASSWAK*RMTLVSWLAVR
Trigger: CCTCACTGCCAGCCAGCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTGGTCTCCAGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CAA 90 bp AAGGACAGGGGTCAGGTGGGAGGTTCTGGCCCTGGGTATGTTCCTGCTCTAAGGTGTCTGCCACTGTCTTaGGGGAGAGGTAGCCACCTA +
Preference number: 3 (lower is better)
Translates to: KDRGQVGGSGPGYVPALRCLPLS*GRGSHL
Trigger: TAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGACA...CCTTAGAGCAGGAACATACCCAGGGCCAGAACCTCCCACCTGACCCCTGTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 72 bp TGTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTaGCTTCCCATGGCCTCCGTGGCTAAAGCAAGGCCA +
Preference number: 3 (lower is better)
Translates to: CGHWVSAGIPSF*LPMASVAKARP
Trigger: TGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CCA 72 bp GGACACTCAGTCTCAGGGGCTTGTAACCTCCTAGCCTaGTACAAGGGTCACTGTGTTCCCAAGGGCCTCCTC +
Preference number: 3 (lower is better)
Translates to: GHSVSGACNLLA*YKGHCVPKGLL
Trigger: GAGGAGGCCCTTGGGAACACAGTGACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CCA 72 bp ACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTaGACTGTCTATGCCAGCCCTTCCATGCCTACTCAG +
Preference number: 3 (lower is better)
Translates to: TSSPSNRQQQEP*TVYASPSMPTQ
Trigger: CTGAGTAGGCATGGAAGGGCTGGCATAGACAGTCCAAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CAA 90 bp GCCTTCCCATGGCCTCCGTGGCTAAAGCAAGGCCACCTTCTACCAGCAATTAAGAAGTGGAGGATGACGTaGGTTAGCTGGCTGGCAGTG +
Preference number: 3 (lower is better)
Translates to: AFPWPPWLKQGHLLPAIKKWRMT*VSWLAV
Trigger: CACTGCCAGCCAGCTAACCAACGTCATCCTCCACTT...CTTAATTGCTGGTAGAAGGTGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CAA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATGGCCTCCGCAACTCGTCTATTTCTaGAGGGGTGAGCTCTGCAAA +
Preference number: 3 (lower is better)
Translates to: VVTGFRLAFPPFAFPWPPQLVYF*RGELCK
Trigger: TTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTTG...CGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp TGGCAAGGACAGGGGTCAGGTGGGAGGTTCTGGCCCTaGGTATGTTCCTGCTCTAAGGCAACACCTAAGAAA +
Preference number: 3 (lower is better)
Translates to: WQGQGSGGRFWP*VCSCSKATPKK
Trigger: TTTCTTAGGTGTTGCCTTAGAGCAGGAACATACCCAGGGCCAGAACCTCCCACCTGACCCCTGTCCTTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 72 bp ATTAAGGGGAAACCAGCATCTTACAGGTGCTGCCTGTaGAGCCCCCACACCTGCCTTGTCTGTGTGACTCTG +
Preference number: 3 (lower is better)
Translates to: IKGKPASYRCCL*SPHTCLVCVTL
Trigger: CAGAGTCACACAGACAAGGCAGGTGTGGGGGCTTCACAGGCAGCACCTGTAAGATGCTGGTTTCCCCTTAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 72 bp ATGACCACAGGTTCTGCTCCAGCACAAGGGGGACAATaGGTTGGATATGGTCAGCCGTCACCACCTGCAGAT +
Preference number: 3 (lower is better)
Translates to: MTTGSAPAQGGQ*VGYGQPSPPAD
Trigger: ATCTGCAGGTGGTGACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 72 bp AGGGACATTCATGATGGTGTCCTCCCCAGGTATGCATaGCCACAGGTTCTGCTCCAGCACAAGGGGGACAAT +
Preference number: 3 (lower is better)
Translates to: RDIHDGVLPRYA*PQVLLQHKGDN
Trigger: ATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCATCATGAATGTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 72 bp GGTCAGCCGTCACCACCTGCAGATCATCATAGAGGCTaGCACTCAAGTACATGTCCCGAAGTGGCATATCAG +
Preference number: 3 (lower is better)
Translates to: GQPSPPADHHRG*HSSTCPEVAYQ
Trigger: CTGATATGCCACTTCGGGACATGTACTTGAGTGGCAGCCTCTATGATGATCTGCAGGTGGTGACGGCTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR GCA 72 bp ATGGTGTCCTCCCCAGGTATGCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACAATGAGTTGGATATGG +
Preference number: 3 (lower is better)
Translates to: MVSSPGMHDHRF*SSTRGTMSWIW
Trigger: CCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp CACAGGTTCTGCTCCAGCACAAGGGGGACAATGAGTTaGATATGGTCAGCCGTCACCACCTGCAGATCATCA +
Preference number: 3 (lower is better)
Translates to: HRFCSSTRGTMS*IWSAVTTCRSS
Trigger: TGATGATCTGCAGGTGGTGACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp TGCCACCACTTTCTCAAAGGTGTCTGCCACTGTCTTTaGGGAGAGGTAGCCACCTACAACACATCGGTCCCA +
Preference number: 3 (lower is better)
Translates to: CHHFLKGVCHCL*GEVATYNTSVP
Trigger: TGGGACCGATGTGTTGTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAAGTGGTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp GCCACAGGTTGTCATACTGAGCTAACCGGTGTGGTCTaGCCACCAAGACAGTGTCACCAAGGGTTACTGATG +
Preference number: 3 (lower is better)
Translates to: ATGCHTELTGVV*PPRQCHQGLLM
Trigger: CATCAGTAACCCTTGGTGACACTGTCTTGGTGGCCAGACCACACCGGTTAGCTCAGTATGACAACCTGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp TCGGTCCCAATAACTGCTACCACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAGGAAGAAACCAGGGAC +
Preference number: 3 (lower is better)
Translates to: SVPITATTRKVL*VLTTNQEETRD
Trigger: GTCCCTGGTTTCTTCCTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR-3UTR CAA 90 bp TGGCCATATATAGCAATCTTAGCAGCAAGGTGGGAAGCCCCAACTCTTTTCTGTGCAGCAGCAAGAACCTaGGACTGTCTATGCCAGCCC +
Preference number: 3 (lower is better)
Translates to: WPYIAILAARWEAPTLFCAAART*DCLCQP
Trigger: GGGCTGGCATAGACAGTCCAAGGTTCTTGCTGCTGC...ACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CAA 90 bp GGCAGAGGCTCTTTGCCAGCCTCACCCTGGAAACCTAAATACTGTCTTATTCCTAAGGGGGACAATGAGTaGGATATGGTCAGCCGTCAC +
Preference number: 3 (lower is better)
Translates to: GRGSLPASPWKPKYCLIPKGDNE*DMVSRH
Trigger: GTGACGGCTGACCATATCCAACTCATTGTCCCCCTT...AGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 72 bp GGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTaGCCAGGACAATTACCAGCAAAACAGGAGGCACCT +
Preference number: 3 (lower is better)
Translates to: GNRRDVNLISMK*PGQLPAKQEAP
Trigger: AGGTGCCTCCTGTTTTGCTGGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
3UTR TCA 72 bp AGCATCCCAGAGCATGTGGCCGCCTCCCATACTTTATaGCAAAGAATGACAGCAAAGAAGGCATGCCCAGCT +
Preference number: 3 (lower is better)
Translates to: SIPEHVAASHTL*QRMTAKKACPA
Trigger: AGCTGGGCATGCCTTCTTTGCTGTCATTCTTTGTCATAAAGTATGGGAGGCGGCCACATGCTCTGGGATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 72 bp TGGCCCCAGCCAAGACAGGACACAAAGATTAGTGACTaGTTCCATTCTACCAGCAGGCAAGTGACTGGAAGG +
Preference number: 3 (lower is better)
Translates to: WPQPRQDTKISD*FHSTSRQVTGR
Trigger: CCTTCCAGTCACTTGCCTGCTGGTAGAATGGAATCAGTCACTAATCTTTGTGTCCTGTCTTGGCTGGGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR GCA 72 bp AGAGGTAGCCACCTACAACACATCGGTCCCAATAACTaGTACCACGAGGAAAGTACTCTGGGTTCTCACGAC +
Preference number: 3 (lower is better)
Translates to: RGSHLQHIGPNN*YHEESTLGSHD
Trigger: GTCGTGAGAACCCAGAGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGATGTGTTGTAGGTGGCTACCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp GTAGGGAGAGGAGATAAGCTTGTTTTCCAGGAACCATaGGCAAAGGCTGATTTGCCAGGGCAGAGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: VGRGDKLVFQEP*AKADLPGQRLF
Trigger: AAAGAGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTCTCCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR GCA 72 bp ACCCACATCACTCCACCTGCAGTTAAACATAGAACCTaGATGCTGATATTCTGGACACTCAGTCTCAGGGGC +
Preference number: 3 (lower is better)
Translates to: THITPPAVKHRT*MLIFWTLSLRG
Trigger: GCCCCTGAGACTGAGTGTCCAGAATATCAGCATGCAGGTTCTATGTTTAACTGCAGGTGGAGTGATGTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CCA 72 bp TTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTaGGCCTTAGTAGCTAAGCTGCTCCTATATGGCCCC +
Preference number: 3 (lower is better)
Translates to: FSPSRRRRIKVL*ALVAKLLLYGP
Trigger: GGGGCCATATAGGAGCAGCTTAGCTACTAAGGCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR-3UTR CAA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAAGCAGCAGCAAGAACCTaGGACTGTCTATGCCAGCCC +
Preference number: 3 (lower is better)
Translates to: GISSEMAAEESYNTSDRKAAART*DCLCQP
Trigger: GGGCTGGCATAGACAGTCCAAGGTTCTTGCTGCTGC...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 72 bp CATAATGCCAAGGAAATGTACCTTGGTAGAAGGCTCTaGACACACAGTGCATCCTGCTCTCAGATCTCCCAG +
Preference number: 3 (lower is better)
Translates to: HNAKEMYLGRRL*THSASCSQISQ
Trigger: CTGGGAGATCTGAGAGCAGGATGCACTGTGTGTTCAGAGCCTTCTACCAAGGTACATTTCCTTGGCATTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR TCA 72 bp AGGAAGTCAATGACAAGATGTTTGTCCTTCTCATACTaGACTTCTAGTGTCAGGGCCTCTGGGGGTGGTGCT +
Preference number: 3 (lower is better)
Translates to: RKSMTRCLSFSY*TSSVRASGGGA
Trigger: AGCACCACCCCCAGAGGCCCTGACACTAGAAGTTCAGTATGAGAAGGACAAACATCTTGTCATTGACTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR TCA 72 bp TGTGTGACTCTGATGACCACACATAGAAACAAACAGTaGGACACAGGCTCTCCAAATCAGCTTCAGCGTGCT +
Preference number: 3 (lower is better)
Translates to: CVTLMTTHRNKQ*DTGSPNQLQRA
Trigger: AGCACGCTGAAGCTGATTTGGAGAGCCTGTGTCTCACTGTTTGTTTCTATGTGTGGTCATCAGAGTCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 72 bp AGCATGTGGCCGCCTCCCATACTTTATGACAAAGAATaGCAGCAAAGAAGGCATGCCCAGCTAATCCACAAA +
Preference number: 3 (lower is better)
Translates to: SMWPPPILYDKE*QQRRHAQLIHK
Trigger: TTTGTGGATTAGCTGGGCATGCCTTCTTTGCTGTCATTCTTTGTCATAAAGTATGGGAGGCGGCCACATGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CAA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTTTTCAGTTAAGGTTCTaGGCTTTATCACGTTTCTCA +
Preference number: 3 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFFQLRF*ALSRFS
Trigger: TGAGAAACGTGATAAAGCCAAGAACCTTAACTGAAA...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 72 bp CAGAGCTCAGCCTGGAAACATGCAATCACTCTTCTGTaGCATCAACTACAGGCAACATCTTCATTAGGCAAA +
Preference number: 3 (lower is better)
Translates to: QSSAWKHAITLL*HQLQATSSLGK
Trigger: TTTGCCTAATGAAGATGTTGCCTGTAGTTGATGTCACAGAAGAGTGATTGCATGTTTCCAGGCTGAGCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR TCA 72 bp CAGTGTCACCAAGGGTTACTGATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCTCATACTGAACTTCTA +
Preference number: 3 (lower is better)
Translates to: QCHQGLLMAGSQ*QDVCPSHTELL
Trigger: TAGAAGTTCAGTATGAGAAGGACAAACATCTTGTCATTGACTTCCTGCCATCAGTAACCCTTGGTGACACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CCA 72 bp ATTACATGGCCATATATAGCAATCTTAGCAGCAAGGTaGGAAGCCCCAACTCTTTTCTGTGGGTCTTATCTA +
Preference number: 3 (lower is better)
Translates to: ITWPYIAILAAR*EAPTLFCGSYL
Trigger: TAGATAAGACCCACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CCA 72 bp TTTAGGACATTTGGAATCTTGAGCATCTTCAAGTTCTaGGGGTTCATTTGCACTCTGCCTGGCATCCTAAAT +
Preference number: 3 (lower is better)
Translates to: FRTFGILSIFKF*GFICTLPGILN
Trigger: ATTTAGGATGCCAGGCAGAGTGCAAATGAACCCCCAGAACTTGAAGATGCTCAAGATTCCAAATGTCCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CCA 72 bp GTTCTGAGGACTTCTAAGAGGTTCCTGCTTATAAGATaGCCAAGTCATGATCTTGGATTGCAAAGCATAGTC +
Preference number: 3 (lower is better)
Translates to: VLRTSKRFLLIR*PSHDLGLQSIV
Trigger: GACTATGCTTTGCAATCCAAGATCATGACTTGGCCATCTTATAAGCAGGAACCTCTTAGAAGTCCTCAGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR TCA 72 bp CAAATCAGAACCAGAGTTACTGTCAGCCTCTTGTCATaGACGGAAGAAAAAGGACACATAGAAATGACATTC +
Preference number: 3 (lower is better)
Translates to: QIRTRVTVSLLS*TEEKGHIEMTF
Trigger: GAATGTCATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTGGTTCTGATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR-3UTR CAA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCCTAATTTCAAATGGGTaGCTGCAGAGTCAGTGCTAT +
Preference number: 3 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFLISNG*LQSQCY
Trigger: ATAGCACTGACTCTGCAGCAACCCATTTGAAATTAG...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
3UTR CAA 72 bp CAGTCAGCCTCCTCCTGGGCCAAGTGGAGGATGACGTaGGTTAGCTGGCTGGCAGTGAGGTGGCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: QSASSWAKWRMT*VSWLAVRWPRA
Trigger: AGCTCTGGGCCACCTCACTGCCAGCCAGCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp AAGGACAGGGGTCAGGTGGGAGGTTCTGGCCCTGGGTATGTTCCTGCTCTAAGGTGCTTGGCCCGAGCCTaGTCTCCAGCAGGGATGGCT +
Preference number: 4 (lower is better)
Translates to: KDRGQVGGSGPGYVPALRCLARA*SPAGMA
Trigger: AGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCA...CCTTAGAGCAGGAACATACCCAGGGCCAGAACCTCCCACCTGACCCCTGTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GCCTTCCCATGGCCTCCGTGGCTAAAGCAAGGCCACCTTCTACCAGCAATTAAGGCCCCTCCTGGCCAATaGTTTGGGCCGGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: AFPWPPWLKQGHLLPAIKAPPGQ*FGPGWA
Trigger: TGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGC...CTTAATTGCTGGTAGAAGGTGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
CDS-3UTR CCA 90 bp CAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGT +
Preference number: 4 (lower is better)
Translates to: QSSQESSEGAGLAWSCALALQQG*LPGSGS
Trigger: ACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGC...GAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATTGCTTGGCCCGAGCCTaGTCTCCAGCAGGGATGGCT +
Preference number: 4 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHCLARA*SPAGMA
Trigger: AGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCA...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp ACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCGAGGGACCCTATGGCTaGCCAGTTGATGGAGCCTGC +
Preference number: 4 (lower is better)
Translates to: TNLPRSQVREQGWHGHVPEGPYG*PVDGAC
Trigger: GCAGGCTCCATCAACTGGCCAGCCATAGGGTCCCTC...GGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 72 bp AGAGCTGGAGTGGACTTGCATATGGCCTTGAGGATCTaGAGGCAAAGAGACCGGCAGCCGGAGTCCGCCTGG +
Preference number: 4 (lower is better)
Translates to: RAGVDLHMALRI*RQRDRQPESAW
Trigger: CCAGGCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
3UTR CAA 72 bp AGGTGGCCCAGAGCTGGAGTGGACTTGCATATGGCCTaGAGGATCTTGAGGCAAAGAGACCGGCAGCCGGAG +
Preference number: 4 (lower is better)
Translates to: RWPRAGVDLHMA*RILRQRDRQPE
Trigger: CTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCTGGGCCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHMSTAA*LARACS
Trigger: AGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACAT...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGGCCTCTGGGGGTGGTaGTGGTCGGATCACATAGTC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEGLWGW*WSDHIV
Trigger: GACTATGTGATCCGACCAGCACCACCCCCAGAGGCC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGGCCCCTCCTGGCCAATaGTTTGGGCCGGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQAPPGQ*FGPGWA
Trigger: TGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGC...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGAGGGACCCTATGGCTaGCCAGTTGATGGAGCCTGC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEEGPYG*PVDGAC
Trigger: GCAGGCTCCATCAACTGGCCAGCCATAGGGTCCCTC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGCTATGGCTGGCCAGTTaGTGGAGCCTGCCACCACTT +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTELWLAS*WSLPPL
Trigger: AAGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAG...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp AGGATAAAGGTTCTCTGGGCCTTAGTAGCTAAGCTGCTCCTATATGGCCCCAGCCTACCTGGCCCCTCCTaGCCAATGGTTTGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: RIKVLWALVAKLLLYGPSLPGPS*PMVWAG
Trigger: CCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAG...GCTGGGGCCATATAGGAGCAGCTTAGCTACTAAGGCCCAGAGAACCTTTATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCCTACCTGGCCCCTCCTaGCCAATGGTTTGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITLPGPS*PMVWAG
Trigger: CCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAG...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp CACTCAGTCTCAGGGGCTTGTAACCTCCTAGCCTGGTACAAGGGTCACTGTGTTGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGT +
Preference number: 4 (lower is better)
Translates to: HSVSGACNLLAWYKGHCVALQQG*LPGSGS
Trigger: ACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGC...AACACAGTGACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGATGACGTTGGTTAGCTaGCTGGCAGTGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEMTLVS*LAVRWP
Trigger: GGGCCACCTCACTGCCAGCCAGCTAACCAACGTCAT...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGTCTGTGGGAAGGGTCTaGAGGGACCGGCTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQSVGRV*RDRLRP
Trigger: AGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGA...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp CAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCTGTCCTCCCCAGGTATaGATGACCACAGGTTCTGCT +
Preference number: 4 (lower is better)
Translates to: QSSQESSEGAGLAWSCALCPPQV*MTTGSA
Trigger: AGCAGAACCTGTGGTCATGCATACCTGGGGAGGACA...GAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGT +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRALQQG*LPGSGS
Trigger: ACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGC...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGAGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGT +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARALQQG*LPGSGS
Trigger: ACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGC...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGTCTGCCACTGTCTTTaGGGAGAGGTAGCCACCTAC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEVCHCL*GEVATY
Trigger: GTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGAC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp AGCCTGGTACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTCAGGGCCTCTGGGGGTaGTGCTGGTCGGATCACATA +
Preference number: 4 (lower is better)
Translates to: SLVQGSLCSQGPPHLPWLQGLWG*CWSDHI
Trigger: TATGTGATCCGACCAGCACCACCCCCAGAGGCCCTG...AAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTACCAGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATCTAACCGGTGTGGTCTaGCCACCAAGACAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHLTGVV*PPRQCH
Trigger: GTGACACTGTCTTGGTGGCCAGACCACACCGGTTAG...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGGACATGCGGAGTCGTaGCTTCTTCAAGTCTACCTG +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEGHAES*LLQVYL
Trigger: CAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATCACAGGTTGTCATACTaGGCTAACCGGTGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHHRLSY*ANRCGL
Trigger: CAGACCACACCGGTTAGCTCAGTATGACAACCTGTG...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp AGCCCCCACACCTGCCTTGTCTGTGTGACTCTGATGACCACACATAGAAACAAATCTGTGGGAAGGGTCTaGAGGGACCGGCTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: SPHTCLVCVTLMTTHRNKSVGRV*RDRLRP
Trigger: AGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGA...TTTGTTTCTATGTGTGGTCATCAGAGTCACACAGACAAGGCAGGTGTGGGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGA +
Preference number: 4 (lower is better)
Translates to: SGTANWVFQQRGKQGRASSSRDG*PVPVVR
Trigger: TCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGA...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAATGCTTGGCCCGAGCCTaGTCTCCAGCAGGGATGGCT +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKCLARA*SPAGMA
Trigger: AGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCA...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GCCTTCCCATGGCCTCCGTGGCTAAAGCAAGGCCACCTTCTACCAGCAATTAAGAGAGCCCATCCAGTTTaGCTCCTCCCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: AFPWPPWLKQGHLLPAIKRAHPV*LLPAPL
Trigger: AAGAGGAGCTGGGAGGAGCCAAACTGGATGGGCTCT...CTTAATTGCTGGTAGAAGGTGGCCTTGCTTTAGCCACGGAGGCCATGGGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGTACATGTCCCGAAGTaGCATATCAGGCAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEVHVPK*HIRQLG
Trigger: GCCAAGCTGCCTGATATGCCACTTCGGGACATGTAC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGACAGGGCCTCTGGGGGTaGTGCTGGTCGGATCACATA +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARQGLWG*CWSDHI
Trigger: TATGTGATCCGACCAGCACCACCCCCAGAGGCCCTG...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTCAGTCAGCCTCCTCCTaGGCCAAGTGGAGGATGACG +
Preference number: 4 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFQSASS*AKWRMT
Trigger: CGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTG...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 72 bp AAGCTTGTTTTCCAGGAACCATGGGCAAAGGCTGATTaGCCAGGGCAGAGGCTCTTTGCCAGCCTCACCCTG +
Preference number: 4 (lower is better)
Translates to: KLVFQEPWAKAD*PGQRLFASLTL
Trigger: CAGGGTGAGGCTGGCAAAGAGCCTCTGCCCTGGCAAATCAGCCTTTGCCCATGGTTCCTGGAAAACAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
3UTR CAA 72 bp CCACAGGTTCTGCTCCAGCACAAGGGGGACAATGAGTaGGATATGGTCAGCCGTCACCACCTGCAGATCATC +
Preference number: 4 (lower is better)
Translates to: PQVLLQHKGDNE*DMVSRHHLQII
Trigger: GATGATCTGCAGGTGGTGACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTGGAGCAGAACCTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS-3UTR TCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGCTCCCCAGGTATGCATaGCCACAGGTTCTGCTCCAG +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRLPRYA*PQVLLQ
Trigger: CTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAG...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGCGATGGCCGTACCAATaGCATTGTCATCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTERWPYQ*HCHPSS
Trigger: GGAAGAAGGATGACAATGGCATTGGTACGGCCATCG...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGTCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGA +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRSSRDG*PVPVVR
Trigger: TCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGA...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKMSTAA*LARACS
Trigger: AGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACAT...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCGCCCCTCCTGGCCAATaGTTTGGGCCGGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: WENTILEWQIRTRVTVSLAPPGQ*FGPGWA
Trigger: TGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGC...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGA +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKAYQAA*PAGSSG
Trigger: TCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGC...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGACAATGAGTTGGATATaGTCAGCCGTCACCACCTGC +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTETMSWI*SAVTTC
Trigger: GCAGGTGGTGACGGCTGACCATATCCAACTCATTGT...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAACAGGGCCTCTGGGGGTaGTGCTGGTCGGATCACATA +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKQGLWG*CWSDHI
Trigger: TATGTGATCCGACCAGCACCACCCCCAGAGGCCCTG...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGAGAGGTGGCCCAGAGCTaGAGTGGACTTGCATATGGC +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKAREVAQS*SGLAYG
Trigger: GCCATATGCAAGTCCACTCCAGCTCTGGGCCACCTC...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCATGACGTTGGTTAGCTaGCTGGCAGTGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITMTLVS*LAVRWP
Trigger: GGGCCACCTCACTGCCAGCCAGCTAACCAACGTCAT...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TATTCTGGACACTCAGTCTCAGGGGCTTGTAACCTCCTAGCCTGGTACAAGGGTATGACGTTGGTTAGCTaGCTGGCAGTGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: YSGHSVSGACNLLAWYKGMTLVS*LAVRWP
Trigger: GGGCCACCTCACTGCCAGCCAGCTAACCAACGTCAT...ACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTGTCCAGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAACAGTCAGCCTCCTCCTaGGCCAAGTGGAGGATGACG +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKQSASS*AKWRMT
Trigger: CGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTG...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTGAGCTTTCAGTCAGCCTCCTCCTaGGCCAAGTGGAGGATGACG +
Preference number: 4 (lower is better)
Translates to: YKGHCVPKGLLIYLGLSFQSASS*AKWRMT
Trigger: CGTCATCCTCCACTTGGCCCAGGAGGAGGCTGACTG...AAAGCTCAAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTAACCAGGGACATTCATaGTGGTGTCCTCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: SGTANWVFQQRGKQGRASNQGHS*WCPPQV
Trigger: TACCTGGGGAGGACACCATCATGAATGTCCCTGGTT...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGGGACCGGCTCAGGCCTaGCTTCATGTCCTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQGPAQA*LHVLVQ
Trigger: TTGAACAAGGACATGAAGGCAGGCCTGAGCCGGTCC...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp TTCTACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTGGACTTGGCCTCAGAGACTCTCCTGCAGGGACATaGGGAGTCGTGACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: FYQQASDWKASCGLGLRDSPAGT*GVVTSS
Trigger: TGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGA...GTCTCTGAGGCCAAGTCCACAACTTGCCTTCCAGTCACTTGCCTGCTGGTAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACA +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRHDHRF*SSTRGT
Trigger: TGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATG...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACA +
Preference number: 4 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITHDHRF*SSTRGT
Trigger: TGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATG...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp GGTAGCACCAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATTTTCTCAAAGGTGTCTaGCACTGTCTTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: GSTNLPRSQVREQGWHGHFLKGV*HCLWGE
Trigger: CTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAA...ATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTGGTGCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCAGAGCACAAAATCGATaGCCGTACCAATGCCATTGT +
Preference number: 4 (lower is better)
Translates to: QSSQESSEGAGLAWSCALRAQNR*PYQCHC
Trigger: ACAATGGCATTGGTACGGCCATCGATTTTGTGCTCT...GAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGGCACCAGCCGGGCATTaGAGAGCACAAAATCGATGG +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRAPAGH*RAQNRW
Trigger: CCATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGC...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCAGAGCCCATCCAGTTTaGCTCCTCCCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITRAHPV*LLPAPL
Trigger: AAGAGGAGCTGGGAGGAGCCAAACTGGATGGGCTCT...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACC +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKRQKSL*EGSAGT
Trigger: GGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCT...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGTGGTTTGGGCCGGGGTaGGCAGAATGTATCTGTGTC +
Preference number: 4 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQWFGPG*AECICV
Trigger: GACACAGATACATTCTGCCCACCCCGGCCCAAACCA...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGACTAACCGGTGTGGTCTaGCCACCAAGACAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARLTGVV*PPRQCH
Trigger: GTGACACTGTCTTGGTGGCCAGACCACACCGGTTAG...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTGAGCTTTGAGGTGGCCCAGAGCTaGAGTGGACTTGCATATGGC +
Preference number: 4 (lower is better)
Translates to: YKGHCVPKGLLIYLGLSFEVAQS*SGLAYG
Trigger: GCCATATGCAAGTCCACTCCAGCTCTGGGCCACCTC...AAAGCTCAAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGGGACATGCGGAGTCGTaGCTTCTTCAAGTCTACCTG +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRGHAES*LLQVYL
Trigger: CAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCC...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGAAACCAGGGACATTCATaGTGGTGTCCTCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARNQGHS*WCPPQV
Trigger: TACCTGGGGAGGACACCATCATGAATGTCCCTGGTT...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp TATTCTGGACACTCAGTCTCAGGGGCTTGTAACCTCCTAGCCTGGTACAAGGGTCACAGGTTGTCATACTaGGCTAACCGGTGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: YSGHSVSGACNLLAWYKGHRLSY*ANRCGL
Trigger: CAGACCACACCGGTTAGCTCAGTATGACAACCTGTG...ACCCTTGTACCAGGCTAGGAGGTTACAAGCCCCTGAGACTGAGTGTCCAGAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGAACTCGTCTATTTCTTaGGGGGTGAGCTCTGCAAAT +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTENSSIS*GVSSAN
Trigger: ATTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTT...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp CATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGTCTGTGGGAAGGGTCTaGAGGGACCGGCTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: HRNDIPNVPSPTHRMITWSVGRV*RDRLRP
Trigger: AGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGA...CCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGATCTCCTGCAGGGACATaGGGAGTCGTGACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARSPAGT*GVVTSS
Trigger: TGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGA...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp TTTGTGTCACCCTCATTAGGAACAACACAGCCACAGAGTGCATCACCAGAATCAATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: FVSPSLGTTQPQSASPESMSTAA*LARACS
Trigger: AGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACAT...TGATTCTGGTGATGCACTCTGTGGCTGTGTTGTTCCTAATGAGGGTGACACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCTGTCCTCCCCAGGTATaGATGACCACAGGTTCTGCT +
Preference number: 4 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITCPPQV*MTTGSA
Trigger: AGCAGAACCTGTGGTCATGCATACCTGGGGAGGACA...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp CTTAGGGTAGGGAGAGGAGATAAGCTTGTTTTCCAGGAACCATGGGCAAAGGCTTGGTTTGGGCCGGGGTaGGCAGAATGTATCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LRVGRGDKLVFQEPWAKAWFGPG*AECICV
Trigger: GACACAGATACATTCTGCCCACCCCGGCCCAAACCA...AGCCTTTGCCCATGGTTCCTGGAAAACAAGCTTATCTCCTCTCCCTACCCTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
CDS-3UTR CCA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAACTACCTGGCCCCTCCTaGCCAATGGTTTGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: GISSEMAAEESYNTSDRKLPGPS*PMVWAG
Trigger: CCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAG...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGAGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGA +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGAYQAA*PAGSSG
Trigger: TCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGC...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAATCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGC +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKSSWAK*RMTLVS
Trigger: GCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGA...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp TTTGTGTCACCCTCATTAGGAACAACACAGCCACAGAGTGCATCACCAGAATCACTCCCCAGGTATGCATaGCCACAGGTTCTGCTCCAG +
Preference number: 4 (lower is better)
Translates to: FVSPSLGTTQPQSASPESLPRYA*PQVLLQ
Trigger: CTGGAGCAGAACCTGTGGTCATGCATACCTGGGGAG...TGATTCTGGTGATGCACTCTGTGGCTGTGTTGTTCCTAATGAGGGTGACACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp TACTGTCTTATTCCTCTGCAGAGCTCAGCCTGGAAACATGCAATCACTCTTCTGCTATGGCTGGCCAGTTaGTGGAGCCTGCCACCACTT +
Preference number: 4 (lower is better)
Translates to: YCLIPLQSSAWKHAITLLLWLAS*WSLPPL
Trigger: AAGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAG...CAGAAGAGTGATTGCATGTTTCCAGGCTGAGCTCTGCAGAGGAATAAGACAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
CDS-3UTR TCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGACTATGGCTGGCCAGTTaGTGGAGCCTGCCACCACTT +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGLWLAS*WSLPPL
Trigger: AAGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAG...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEMAGSQ*QDVCPS
Trigger: AGAAGGACAAACATCTTGTCATTGACTTCCTGCCAT...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR TCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAACACAGGTTGTCATACTaGGCTAACCGGTGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKHRLSY*ANRCGL
Trigger: CAGACCACACCGGTTAGCTCAGTATGACAACCTGTG...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGCGATGGCCGTACCAATaGCATTGTCATCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQRWPYQ*HCHPSS
Trigger: GGAAGAAGGATGACAATGGCATTGGTACGGCCATCG...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR GCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGGAAAGAAGTTTCTCCTaGAGGGACATGCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRERSFS*RDMRSR
Trigger: ACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTC...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGATCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGA +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGSSRDG*PVPVVR
Trigger: TCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGA...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp TTTGTGTCACCCTCATTAGGAACAACACAGCCACAGAGTGCATCACCAGAATCATCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGA +
Preference number: 4 (lower is better)
Translates to: FVSPSLGTTQPQSASPESSSRDG*PVPVVR
Trigger: TCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGA...TGATTCTGGTGATGCACTCTGTGGCTGTGTTGTTCCTAATGAGGGTGACACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: WENTILEWQIRTRVTVSLMSTAA*LARACS
Trigger: AGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACAT...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGCCAGTTGATGGAGCCTaGCACCACTTTCTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRPVDGA*HHFLKG
Trigger: ACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGG...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAATTCTTCAAGTCTACCTaGCCCCTCCTGGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKFFKST*PLLANG
Trigger: ACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAA...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTGAGCTTTTTCTTCAAGTCTACCTaGCCCCTCCTGGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: YKGHCVPKGLLIYLGLSFFFKST*PLLANG
Trigger: ACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAA...AAAGCTCAAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGTCACCAAGGGTTACTaGTGGCAGGAAGTCAATGAC +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKVTKGY*WQEVND
Trigger: GTCATTGACTTCCTGCCATCAGTAACCCTTGGTGAC...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATTCTGTGGGAAGGGTCTaGAGGGACCGGCTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNSVGRV*RDRLRP
Trigger: AGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGA...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGAAAGAAGTTTCTCCTaGAGGGACATGCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKERSFS*RDMRSR
Trigger: ACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTC...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp GTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTTGCTTGGCCCGAGCCTaGTCTCCAGCAGGGATGGCT +
Preference number: 4 (lower is better)
Translates to: VQRWQLRSLIILLTGNLTCLARA*SPAGMA
Trigger: AGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCA...AGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGGATCATCATAGAGGCTaGCACTCAAGTACATGTCCC +
Preference number: 4 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRDHHRG*HSSTCP
Trigger: GGGACATGTACTTGAGTGGCAGCCTCTATGATGATC...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCCATGACCACAGGTTCTaGTCCAGCACAAGGGGGACA +
Preference number: 4 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGHDHRF*SSTRGT
Trigger: TGTCCCCCTTGTGCTGGAGCAGAACCTGTGGTCATG...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGATTTCTCAAAGGTGTCTaGCACTGTCTTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARFLKGV*HCLWGE
Trigger: CTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAA...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR GCA 90 bp AGCCCCCACACCTGCCTTGTCTGTGTGACTCTGATGACCACACATAGAAACAAACCAGTTGATGGAGCCTaGCACCACTTTCTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: SPHTCLVCVTLMTTHRNKPVDGA*HHFLKG
Trigger: ACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGG...TTTGTTTCTATGTGTGGTCATCAGAGTCACACAGACAAGGCAGGTGTGGGGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
CDS-3UTR GCA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAAGGCCTCTGGGGGTGGTaGTGGTCGGATCACATAGTC +
Preference number: 4 (lower is better)
Translates to: GISSEMAAEESYNTSDRKGLWGW*WSDHIV
Trigger: GACTATGTGATCCGACCAGCACCACCCCCAGAGGCC...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGAAGAGCCCATCCAGTTTaGCTCCTCCCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGRAHPV*LLPAPL
Trigger: AAGAGGAGCTGGGAGGAGCCAAACTGGATGGGCTCT...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TACAAGGGTCACTGTGTTCCCAAGGGCCTCCTCATTTACCTTGGCTTGAGCTTTACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAG +
Preference number: 4 (lower is better)
Translates to: YKGHCVPKGLLIYLGLSFTRKVL*VLTTNQ
Trigger: CTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGT...AAAGCTCAAGCCAAGGTAAATGAGGAGGCCCTTGGGAACACAGTGACCCTTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAG +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKTRKVL*VLTTNQ
Trigger: CTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGT...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCCTAACCGGTGTGGTCTaGCCACCAAGACAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGLTGVV*PPRQCH
Trigger: GTGACACTGTCTTGGTGGCCAGACCACACCGGTTAG...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGATCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGC +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGSSWAK*RMTLVS
Trigger: GCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGA...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TGGCCATATATAGCAATCTTAGCAGCAAGGTGGGAAGCCCCAACTCTTTTCTGTTCCTCCTGGGCCAAGTaGAGGATGACGTTGGTTAGC +
Preference number: 4 (lower is better)
Translates to: WPYIAILAARWEAPTLFCSSWAK*RMTLVS
Trigger: GCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGA...ACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 72 bp ACCAGCAGGCAAGTGACTGGAAGGCAAGTTGTGGACTaGGCCTCAGAGACCAAGGGTTTAAAAGACTACAAG +
Preference number: 4 (lower is better)
Translates to: TSRQVTGRQVVD*ASETKGLKDYK
Trigger: CTTGTAGTCTTTTAAACCCTTGGTCTCTGAGGCCAAGTCCACAACTTGCCTTCCAGTCACTTGCCTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: SGTANWVFQQRGKQGRASMAGSQ*QDVCPS
Trigger: AGAAGGACAAACATCTTGTCATTGACTTCCTGCCAT...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp AGGATAAAGGTTCTCTGGGCCTTAGTAGCTAAGCTGCTCCTATATGGCCCCAGCAACTCGTCTATTTCTTaGGGGGTGAGCTCTGCAAAT +
Preference number: 4 (lower is better)
Translates to: RIKVLWALVAKLLLYGPSNSSIS*GVSSAN
Trigger: ATTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTT...GCTGGGGCCATATAGGAGCAGCTTAGCTACTAAGGCCCAGAGAACCTTTATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGATCTCCTGCAGGGACATaGGGAGTCGTGACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGSPAGT*GVVTSS
Trigger: TGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGA...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGATGTCCTCCCCAGGTATaGATGACCACAGGTTCTGCT +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGCPPQV*MTTGSA
Trigger: AGCAGAACCTGTGGTCATGCATACCTGGGGAGGACA...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATGGCCTCTGGGGGTGGTaGTGGTCGGATCACATAGTC +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNGLWGW*WSDHIV
Trigger: GACTATGTGATCCGACCAGCACCACCCCCAGAGGCC...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGAAGAGCACAAAATCGATaGCCGTACCAATGCCATTGT +
Preference number: 4 (lower is better)
Translates to: EQTRGQGAEPDIADRKARRAQNR*PYQCHC
Trigger: ACAATGGCATTGGTACGGCCATCGATTTTGTGCTCT...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CCA 90 bp AGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTCCTCTCAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACC +
Preference number: 4 (lower is better)
Translates to: RWQLRSLIILLTGNLTPLRQKSL*EGSAGT
Trigger: GGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCT...GAGAGGAGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TCCCATGCTGCAGAAGACGCTGATTTCACCAGTTCAATTTCTCTCCTTCAAGGATTCTTCAAGTCTACCTaGCCCCTCCTGGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: SHAAEDADFTSSISLLQGFFKST*PLLANG
Trigger: ACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAA...TCCTTGAAGGAGAGAAATTGAACTGGTGAAATCAGCGTCTTCTGCAGCATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCGTCTGCCACTGTCTTTaGGGAGAGGTAGCCACCTAC +
Preference number: 4 (lower is better)
Translates to: WENTILEWQIRTRVTVSLVCHCL*GEVATY
Trigger: GTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGAC...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCGGACATGCGGAGTCGTaGCTTCTTCAAGTCTACCTG +
Preference number: 4 (lower is better)
Translates to: WENTILEWQIRTRVTVSLGHAES*LLQVYL
Trigger: CAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCC...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp ATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGCCATATATAGCAAACCAGGGACATTCATaGTGGTGTCCTCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: IPNVPSPTHRMITWPYIANQGHS*WCPPQV
Trigger: TACCTGGGGAGGACACCATCATGAATGTCCCTGGTT...TGCTATATATGGCCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp TGGTTTTGCAGCATTCTACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTATGGCAGGAAGTCAATaGCAAGATGTTTGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: WFCSILPALPPTGSSKNLMAGSQ*QDVCPS
Trigger: AGAAGGACAAACATCTTGTCATTGACTTCCTGCCAT...AAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGTAGAATGCTGCAAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAATCGGTCCCAATAACTaGTACCACGAGGAAAGTACT +
Preference number: 4 (lower is better)
Translates to: RREQTRGQGAEPDIADRKIGPNN*YHEEST
Trigger: AGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGAT...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CCA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAAAGAGCCCATCCAGTTTaGCTCCTCCCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GISSEMAAEESYNTSDRKRAHPV*LLPAPL
Trigger: AAGAGGAGCTGGGAGGAGCCAAACTGGATGGGCTCT...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CAGGAGGGCATGTTTCAGTTAAGGTTCTTGGCTTTATCACGTTTCTCATACTATAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACC +
Preference number: 4 (lower is better)
Translates to: QEGMFQLRFLALSRFSYYRQKSL*EGSAGT
Trigger: GGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCT...ATAGTATGAGAAACGTGATAAAGCCAAGAACCTTAACTGAAACATGCCCTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACC +
Preference number: 4 (lower is better)
Translates to: ESVQRWQLRSLIILLTGNRQKSL*EGSAGT
Trigger: GGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCT...ATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CATCAACTACAGGCAACATCTTCATTAGGCAAATGTACTCTGGGGACAAGAGCCACAATGAGTTGGATATaGTCAGCCGTCACCACCTGC +
Preference number: 4 (lower is better)
Translates to: HQLQATSSLGKCTLGTRATMSWI*SAVTTC
Trigger: GCAGGTGGTGACGGCTGACCATATCCAACTCATTGT...GGCTCTTGTCCCCAGAGTACATTTGCCTAATGAAGATGTTGCCTGTAGTTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023048.12
CDS-3UTR CCA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCACAATGAGTTGGATATaGTCAGCCGTCACCACCTGC +
Preference number: 4 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGTMSWI*SAVTTC
Trigger: GCAGGTGGTGACGGCTGACCATATCCAACTCATTGT...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAAGTCTGCCACTGTCTTTaGGGAGAGGTAGCCACCTAC +
Preference number: 4 (lower is better)
Translates to: GISSEMAAEESYNTSDRKVCHCL*GEVATY
Trigger: GTAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGAC...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGCGATGGCCGTACCAATaGCATTGTCATCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: HRNDIPNVPSPTHRMITWRWPYQ*HCHPSS
Trigger: GGAAGAAGGATGACAATGGCATTGGTACGGCCATCG...CCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GAAAAAGGACACATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGACGATGGCCGTACCAATaGCATTGTCATCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: EKGHIEMTFQMSLPPPIGRWPYQ*HCHPSS
Trigger: GGAAGAAGGATGACAATGGCATTGGTACGGCCATCG...TCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATGTGTCCTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGCCAGTTGATGGAGCCTaGCACCACTTTCTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: HRNDIPNVPSPTHRMITWPVDGA*HHFLKG
Trigger: ACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGG...CCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTGCACCAGCCGGGCATTaGAGAGCACAAAATCGATGG +
Preference number: 4 (lower is better)
Translates to: VQRWQLRSLIILLTGNLTAPAGH*RAQNRW
Trigger: CCATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGC...AGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTTGGTTTGGGCCGGGGTaGGCAGAATGTATCTGTGTC +
Preference number: 4 (lower is better)
Translates to: VQRWQLRSLIILLTGNLTWFGPG*AECICV
Trigger: GACACAGATACATTCTGCCCACCCCGGCCCAAACCA...AGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGA +
Preference number: 4 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFAYQAA*PAGSSG
Trigger: TCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGC...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp TGGCCATATATAGCAATCTTAGCAGCAAGGTGGGAAGCCCCAACTCTTTTCTGTAGAGCACAAAATCGATaGCCGTACCAATGCCATTGT +
Preference number: 4 (lower is better)
Translates to: WPYIAILAARWEAPTLFCRAQNR*PYQCHC
Trigger: ACAATGGCATTGGTACGGCCATCGATTTTGTGCTCT...ACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp GAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATGTACATGTCCCGAAGTaGCATATCAGGCAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: ESVQRWQLRSLIILLTGNVHVPK*HIRQLG
Trigger: GCCAAGCTGCCTGATATGCCACTTCGGGACATGTAC...ATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATGTCACCAAGGGTTACTaGTGGCAGGAAGTCAATGAC +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNVTKGY*WQEVND
Trigger: GTCATTGACTTCCTGCCATCAGTAACCCTTGGTGAC...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCAACTCGTCTATTTCTTaGGGGGTGAGCTCTGCAAAT +
Preference number: 4 (lower is better)
Translates to: WENTILEWQIRTRVTVSLNSSIS*GVSSAN
Trigger: ATTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTT...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATACGAGGAAAGTACTCTaGGTTCTCACGACGAACCAG +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNTRKVL*VLTTNQ
Trigger: CTGGTTCGTCGTGAGAACCCAGAGTACTTTCCTCGT...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GATGTTTTCAGCTCCTACTTTGTTTTTATTAACTACCAGGAGGGCATGTTTCAGGAAAGAAGTTTCTCCTaGAGGGACATGCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: DVFSSYFVFINYQEGMFQERSFS*RDMRSR
Trigger: ACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTC...CTGAAACATGCCCTCCTGGTAGTTAATAAAAACAAAGTAGGAGCTGAAAACATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp GAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATGATCATCATAGAGGCTaGCACTCAAGTACATGTCCC +
Preference number: 4 (lower is better)
Translates to: ESVQRWQLRSLIILLTGNDHHRG*HSSTCP
Trigger: GGGACATGTACTTGAGTGGCAGCCTCTATGATGATC...ATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATGATCATCATAGAGGCTaGCACTCAAGTACATGTCCC +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNDHHRG*HSSTCP
Trigger: GGGACATGTACTTGAGTGGCAGCCTCTATGATGATC...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATTTTCTCAAAGGTGTCTaGCACTGTCTTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNFLKGV*HCLWGE
Trigger: CTCTCCCCAAAGACAGTGGCAGACACCTTTGAGAAA...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CCA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCGTACATGTCCCGAAGTaGCATATCAGGCAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFVHVPK*HIRQLG
Trigger: GCCAAGCTGCCTGATATGCCACTTCGGGACATGTAC...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 72 bp CAGTTTTATCAAGTCATAATGCCAAGGAAATGTACCTaGGTAGAAGGCTCTGAACACACAGTGCATCCTGCT +
Preference number: 4 (lower is better)
Translates to: QFYQVIMPRKCT*VEGSEHTVHPA
Trigger: AGCAGGATGCACTGTGTGTTCAGAGCCTTCTACCAAGGTACATTTCCTTGGCATTATGACTTGATAAAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR TCA 90 bp AATACTTCTGACAGGAAATCTAACTCCTCTCTAAAATCTGGTTTTGCAGCATTCGTCACCAAGGGTTACTaGTGGCAGGAAGTCAATGAC +
Preference number: 4 (lower is better)
Translates to: NTSDRKSNSSLKSGFAAFVTKGY*WQEVND
Trigger: GTCATTGACTTCCTGCCATCAGTAACCCTTGGTGAC...GAATGCTGCAAAACCAGATTTTAGAGAGGAGTTAGATTTCCTGTCAGAAGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGGAGGGCATGTTTCAGTTAAGGTTCTTGGCTTTATCACGTTTCTCATACTATATCGGTCCCAATAACTaGTACCACGAGGAAAGTACT +
Preference number: 4 (lower is better)
Translates to: QEGMFQLRFLALSRFSYYIGPNN*YHEEST
Trigger: AGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGAT...ATAGTATGAGAAACGTGATAAAGCCAAGAACCTTAACTGAAACATGCCCTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR GCA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATATCGGTCCCAATAACTaGTACCACGAGGAAAGTACT +
Preference number: 4 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNIGPNN*YHEEST
Trigger: AGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGAT...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
3UTR CAA 72 bp TACAGTTTTAGGCATCAAGTATATAGTCTGCTAATCTaGACACTCTCAAAATACCTCCCAAACAGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: YSFRHQVYSLLI*TLSKYLPNRSR
Trigger: CCTACTTCTGTTTGGGAGGTATTTTGAGAGTGTCAAGATTAGCAGACTATATACTTGATGCCTAAAACTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS GCA 90 bp GCCCGCAGGAAGCTCCGGAGCTCAGCACATATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCTCCAGCAGGGATGGCTGCCCGGTTC +
Preference number: 5 (lower is better)
Translates to: ARRKLRSSAHMSTAA*LARACSPAGMAARF
Trigger: GAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAGCTTCCTGCGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 90 bp GCAGGAAGCTCCGGAGCTCAGCACATATGTCCACCGCAGCTTGCTTaGCCCGAGCCTGCTCTCCAGCAGGGATGGCTGCCCGGTTCCGGT +
Preference number: 5 (lower is better)
Translates to: AGSSGAQHICPPQLA*PEPALQQGWLPGSG
Trigger: ACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAGCTTCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GTGGTCACTGGGTTTCGGCTGGCATTCCCTCCTTTTGCCTTCCCATGGCCTCCGTATGTCCACCGCAGCTaGCTTGGCCCGAGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: VVTGFRLAFPPFAFPWPPYVHRS*LGPSLL
Trigger: GAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATA...CGGAGGCCATGGGAAGGCAAAAGGAGGGAATGCCAGCCGAAACCCAGTGACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
CDS CCA 90 bp TGTCCACCGCAGCTTGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGTAAGAAAGAAGTTTCTCCTGCAGGG +
Preference number: 5 (lower is better)
Translates to: CPPQLAWPEPALQQG*LPGSGSKKEVSPAG
Trigger: CCCTGCAGGAGAAACTTCTTTCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp CAATCTTCCCAGGAGTCAAGTGAGGGAGCAGGGCTGGCATGGTCATGTGCCCTCTATGTCCACCGCAGCTaGCTTGGCCCGAGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: QSSQESSEGAGLAWSCALYVHRS*LGPSLL
Trigger: GAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATA...GAGGGCACATGACCATGCCAGCCCTGCTCCCTCACTTGACTCCTGGGAAGATTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS GCA 90 bp CACCGCAGCTTGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGAAAGAAGTTTCTCCTGCAGGGACAT +
Preference number: 5 (lower is better)
Translates to: HRSLLGPSLLSSRDG*PVPVVRKKFLLQGH
Trigger: ATGTCCCTGCAGGAGAAACTTCTTTCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 90 bp GGCTGCCACTCAAGTACATGTCCCGAAGTGGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGAGCTCAGCACATATGTCCACCGCAG +
Preference number: 5 (lower is better)
Translates to: GCHSSTCPEVAYQAA*PAGSSGAQHICPPQ
Trigger: CTGCGGTGGACATATGTGCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGAGTGGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS GCA 90 bp CACCGCAGCTTGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATGGCTaGCCGGTTCCGGTAGTAAGAAAGAAGTTTCTCCTGTGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: HRSLLGPSLLSSRDG*PVPVVRKKFLLCQR
Trigger: CCTTTGACACAGGAGAAACTTCTTTCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS CCA 90 bp TTCTCCTGCAGGGACATGCGGAGTCGTGACTTCTTCAAGTCTACCTaGCCCCTCCTGGCCAATGGTTTGGGCCGGGGTGGGCAGAATGTA +
Preference number: 5 (lower is better)
Translates to: FSCRDMRSRDFFKST*PLLANGLGRGGQNV
Trigger: TACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 90 bp TGTCCACCGCAGCTTGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGTAAGAAAGAAGTTTCTCCTGTGTCA +
Preference number: 5 (lower is better)
Translates to: CPPQLAWPEPALQQG*LPGSGSKKEVSPVS
Trigger: TGACACAGGAGAAACTTCTTTCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS GCA 90 bp GCACCAGCCGGGCATTGGAGAGCACAAAATCGATGGCCGTACCAATaGCATTGTCATCCTTCTTCCCTTTGCGCTCACCAGCGCCTGCCA +
Preference number: 5 (lower is better)
Translates to: APAGHWRAQNRWPYQ*HCHPSSLCAHQRLP
Trigger: TGGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGACAATGGCATTGGTACGGCCATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS CCA 90 bp GGGACATGCGGAGTCGTGACTTCTTCAAGTCTACCTGGCCCCTCCTaGCCAATGGTTTGGGCCGGGGTGGGCAGAATGTATCTGTGTCAA +
Preference number: 5 (lower is better)
Translates to: GTCGVVTSSSLPGPS*PMVWAGVGRMYLCQ
Trigger: TTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 90 bp CTGCAGATCATCATAGAGGCTGCCACTCAAGTACATGTCCCGAAGTaGCATATCAGGCAGCTTGGCCCGCAGGAAGCTCCGGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: LQIIIEAATQVHVPK*HIRQLGPQEAPELS
Trigger: GCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGAGTGGCAGCCTCTATGATGATCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGTCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQSTAAC*ARACSP
Trigger: TGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGA...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCGGCATATCAGGCAGCTaGGCCCGCAGGAAGCTCCGG +
Preference number: 5 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITGISGS*ARRKLR
Trigger: CCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCC...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTGGCATATCAGGCAGCTaGGCCCGCAGGAAGCTCCGG +
Preference number: 5 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFGISGS*ARRKLR
Trigger: CCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCC...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS GCA 90 bp CTGCCCGGTTCCGGTAGTAAGAAAGAAGTTTCTCCTGCAGGGACATaGGGAGTCGTGACTTCTTCAAGTCTACCTGGCCCCTCCTGGCCA +
Preference number: 5 (lower is better)
Translates to: LPGSGSKKEVSPAGT*GVVTSSSLPGPSWP
Trigger: TGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTCTTACTACCGGAACCGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 90 bp CACCCACACCCAGCACCAGCCGGGCATTGGAGAGCACAAAATCGATaGCCGTACCAATGCCATTGTCATCCTTCTTCCCTTTGCGCTCAC +
Preference number: 5 (lower is better)
Translates to: HPHPAPAGHWRAQNR*PYQCHCHPSSLCAH
Trigger: GTGAGCGCAAAGGGAAGAAGGATGACAATGGCATTGGTACGGCCATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCTGGGTGTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCTATGTCCACCGCAGCTaGCTTGGCCCGAGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITYVHRS*LGPSLL
Trigger: GAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATA...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGGCATATCAGGCAGCTaGGCCCGCAGGAAGCTCCGG +
Preference number: 5 (lower is better)
Translates to: RREQTRGQGAEPDIADRKGISGS*ARRKLR
Trigger: CCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCC...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS CCA 90 bp GTCGTGACTTCTTCAAGTCTACCTGGCCCCTCCTGGCCAATGGTTTaGGCCGGGGTGGGCAGAATGTATCTGTGTCAAAGGCAGAAGAGT +
Preference number: 5 (lower is better)
Translates to: VVTSSSLPGPSWPMV*AGVGRMYLCQRQKS
Trigger: ACTCTTCTGCCTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCTCATCCTTCTTCCCTTaGCGCTCACCAGCGCCTGCC +
Preference number: 5 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITSSFFP*RSPAPA
Trigger: GGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGA...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp GGCAGAGGCTCTTTGCCAGCCTCACCCTGGAAACCTAAATACTGTCTTATTCCTTATGTCCACCGCAGCTaGCTTGGCCCGAGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: GRGSLPASPWKPKYCLIPYVHRS*LGPSLL
Trigger: GAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATA...AGGAATAAGACAGTATTTAGGTTTCCAGGGTGAGGCTGGCAAAGAGCCTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp GGGAAACCGCAGGGACGTCAATCTCATCAGCATGAAGTGACCAGGACAATTACCCCTATGGCTGGCCAGTaGATGGAGCCTGCCACCACT +
Preference number: 5 (lower is better)
Translates to: GKPQGRQSHQHEVTRTITPMAGQ*MEPATT
Trigger: AGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAGG...GGTAATTGTCCTGGTCACTTCATGCTGATGAGATTGACGTCCCTGCGGTTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS TCA 90 bp CCGGTAGTAAGAAAGAAGTTTCTCCTGCAGGGACATGCGGAGTCGTaGCTTCTTCAAGTCTACCTGGCCCCTCCTGGCCAATGGTTTGGG +
Preference number: 5 (lower is better)
Translates to: PVVRKKFLLQGHAES*LLQVYLAPPGQWFG
Trigger: CCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTCTTACTACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGCCGTACCAATGCCATaGTCATCCTTCTTCCCTTTG +
Preference number: 5 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEAVPMP*SSFFPL
Trigger: CAAAGGGAAGAAGGATGACAATGGCATTGGTACGGC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp CAGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCAAGGGGGACAATGAGTaGGATATGGTCAGCCGTCAC +
Preference number: 5 (lower is better)
Translates to: QWHSQLGLSTKREAGQSIKGDNE*DMVSRH
Trigger: GTGACGGCTGACCATATCCAACTCATTGTCCCCCTT...GATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS CCA 90 bp GTAGTAAGAAAGAAGTTTCTCCTGTGTCAAAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACCGGCTCAGGCCTGCCTTCATGTCCT +
Preference number: 5 (lower is better)
Translates to: VVRKKFLLCQRQKSL*EGSAGTGSGLPSCP
Trigger: AGGACATGAAGGCAGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCTTTGACACAGGAGAAACTTCTTTCTTACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGAAGCACCAGCCGGGCATaGGAGAGCACAAAATCGATG +
Preference number: 5 (lower is better)
Translates to: EQTRGQGAEPDIADRKARSTSRA*ESTKSM
Trigger: CATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCT...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGAGCACCAGCCGGGCATaGGAGAGCACAAAATCGATG +
Preference number: 5 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRSTSRA*ESTKSM
Trigger: CATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCT...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
CDS-3UTR CAA 90 bp TGGTTTTGCAGCATTCTACCAGCTCTCCCTCCAACAGGCAGCAGCAAGAACCTTAGCACCAGCCGGGCATaGGAGAGCACAAAATCGATG +
Preference number: 5 (lower is better)
Translates to: WFCSILPALPPTGSSKNLSTSRA*ESTKSM
Trigger: CATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCT...AAGGTTCTTGCTGCTGCCTGTTGGAGGGAGAGCTGGTAGAATGCTGCAAAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GCACCTAGGGACCCTGTGAGGCACCAACCACGTAGCCAAGTGTTTCTAACGGAGGACTTGCATATGGCCTaGAGGATCTTGAGGCAAAGA +
Preference number: 5 (lower is better)
Translates to: APRDPVRHQPRSQVFLTEDLHMA*RILRQR
Trigger: TCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTC...CTCCGTTAGAAACACTTGGCTACGTGGTTGGTGCCTCACAGGGTCCCTAGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp ATAGAGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAGTGGAGGATGACGTaGGTTAGCTGGCTGGCAGTG +
Preference number: 5 (lower is better)
Translates to: IEKRANKRPRGRTGHSRQKWRMT*VSWLAV
Trigger: CACTGCCAGCCAGCTAACCAACGTCATCCTCCACTT...CTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTAAGTGGAGGATGACGTaGGTTAGCTGGCTGGCAGTG +
Preference number: 5 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFKWRMT*VSWLAV
Trigger: CACTGCCAGCCAGCTAACCAACGTCATCCTCCACTT...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TGGCCATATATAGCAATCTTAGCAGCAAGGTGGGAAGCCCCAACTCTTTTCTGTTCATCCTTCTTCCCTTaGCGCTCACCAGCGCCTGCC +
Preference number: 5 (lower is better)
Translates to: WPYIAILAARWEAPTLFCSSFFP*RSPAPA
Trigger: GGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGA...ACAGAAAAGAGTTGGGGCTTCCCACCTTGCTGCTAAGATTGCTATATATGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GGAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: GISSEMAAEESYNTSDRKSTAAC*ARACSP
Trigger: TGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGA...TTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TCTAAGAGGTTCCTGCTTATAAGATGGCCAAGTCATGATCTTGGATTGCAAAGCTCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: SKRFLLIRWPSHDLGLQSSTAAC*ARACSP
Trigger: TGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGA...GCTTTGCAATCCAAGATCATGACTTGGCCATCTTATAAGCAGGAACCTCTTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGAAGGGGGACAATGAGTaGGATATGGTCAGCCGTCAC +
Preference number: 5 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRKGDNE*DMVSRH
Trigger: GTGACGGCTGACCATATCCAACTCATTGTCCCCCTT...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp AGAAGAGAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAATGTCTGCCACTGTCTTaGGGGAGAGGTAGCCACCTA +
Preference number: 5 (lower is better)
Translates to: RREQTRGQGAEPDIADRKCLPLS*GRGSHL
Trigger: TAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGACA...TTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTCTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp CAGCCTAGAGTAAGGCGGCAAGTGGGGAGCACAGTGCTTGGTTACAAAAATAGGAGAGCTGGAGTGGACTaGCATATGGCCTTGAGGATC +
Preference number: 5 (lower is better)
Translates to: QPRVRRQVGSTVLGYKNRRAGVD*HMALRI
Trigger: GATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCT...CCTATTTTTGTAACCAAGCACTGTGCTCCCCACTTGCCGCCTTACTCTAGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp ATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGCCATATATAGCATCATCCTTCTTCCCTTaGCGCTCACCAGCGCCTGCC +
Preference number: 5 (lower is better)
Translates to: IPNVPSPTHRMITWPYIASSFFP*RSPAPA
Trigger: GGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGA...TGCTATATATGGCCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCCCTATGGCTGGCCAGTaGATGGAGCCTGCCACCACT +
Preference number: 5 (lower is better)
Translates to: WENTILEWQIRTRVTVSLPMAGQ*MEPATT
Trigger: AGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAGG...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp AGTGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTGACTTGCATATGGCCTaGAGGATCTTGAGGCAAAGA +
Preference number: 5 (lower is better)
Translates to: SGTANWVFQQRGKQGRASDLHMA*RILRQR
Trigger: TCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTC...AGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATGACATTTCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: YCQPLVMNGRKRTHRNDISTAAC*ARACSP
Trigger: TGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGA...AATGTCATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TCACCAGTTCAATTTCTCTCCTTCAAGGAGAAGGAGGATAAAGGTTCTCTGGGCTGTCTGCCACTGTCTTaGGGGAGAGGTAGCCACCTA +
Preference number: 5 (lower is better)
Translates to: SPVQFLSFKEKEDKGSLGCLPLS*GRGSHL
Trigger: TAGGTGGCTACCTCTCCCCAAAGACAGTGGCAGACA...GCCCAGAGAACCTTTATCCTCCTTCTCCTTGAAGGAGAGAAATTGAACTGGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TGGCACAGCCAACTGGGTCTTTCAACAAAGAGGGAAGCAGGGCAGAGCATCTTTCAACTCGTCTATTTCTaGAGGGGTGAGCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: WHSQLGLSTKREAGQSIFQLVYF*RGELCK
Trigger: TTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTTG...AAAGATGCTCTGCCCTGCTTCCCTCTTTGTTGAAAGACCCAGTTGGCTGTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GAGCAAACAAGAGGCCAAGGGGCAGAACCGGACATAGCAGACAGAAAAGCAAGACAACTCGTCTATTTCTaGAGGGGTGAGCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: EQTRGQGAEPDIADRKARQLVYF*RGELCK
Trigger: TTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTTG...TCTTGCTTTTCTGTCTGCTATGTCCGGTTCTGCCCCTTGGCCTCTTGTTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
CDS-3UTR CAA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATTCATCCTTCTTCCCTTaGCGCTCACCAGCGCCTGCC +
Preference number: 5 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNSSFFP*RSPAPA
Trigger: GGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGA...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp CAGAGTTACTGTCAGCCTCTTGTCATGAACGGAAGAAAAAGGACACATAGAAATCCTATGGCTGGCCAGTaGATGGAGCCTGCCACCACT +
Preference number: 5 (lower is better)
Translates to: QSYCQPLVMNGRKRTHRNPMAGQ*MEPATT
Trigger: AGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAGG...ATTTCTATGTGTCCTTTTTCTTCCGTTCATGACAAGAGGCTGACAGTAACTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TGGGAGAACACAATACTAGAATGGCAAATCAGAACCAGAGTTACTGTCAGCCTCAAGTGGAGGATGACGTaGGTTAGCTGGCTGGCAGTG +
Preference number: 5 (lower is better)
Translates to: WENTILEWQIRTRVTVSLKWRMT*VSWLAV
Trigger: CACTGCCAGCCAGCTAACCAACGTCATCCTCCACTT...GAGGCTGACAGTAACTCTGGTTCTGATTTGCCATTCTAGTATTGTGTTCTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp TCTAAGAGGTTCCTGCTTATAAGATGGCCAAGTCATGATCTTGGATTGCAAAGCAGCACCAGCCGGGCATaGGAGAGCACAAAATCGATG +
Preference number: 5 (lower is better)
Translates to: SKRFLLIRWPSHDLGLQSSTSRA*ESTKSM
Trigger: CATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCT...GCTTTGCAATCCAAGATCATGACTTGGCCATCTTATAAGCAGGAACCTCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp AGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCTAACTCCTCTCAGAGCTGGAGTGGACTaGCATATGGCCTTGAGGATC +
Preference number: 5 (lower is better)
Translates to: RWQLRSLIILLTGNLTPLRAGVD*HMALRI
Trigger: GATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCT...GAGAGGAGTTAGATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp CATAGAAATGACATTCCAAATGTCCCTTCCCCCACCCATAGGATGATTACATGGGACTTGCATATGGCCTaGAGGATCTTGAGGCAAAGA +
Preference number: 5 (lower is better)
Translates to: HRNDIPNVPSPTHRMITWDLHMA*RILRQR
Trigger: TCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTC...CCATGTAATCATCCTATGGGTGGGGGAAGGGACATTTGGAATGTCATTTCTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp CAGGAGGGCATGTTTCAGTTAAGGTTCTTGGCTTTATCACGTTTCTCATACTATAGAGCTGGAGTGGACTaGCATATGGCCTTGAGGATC +
Preference number: 5 (lower is better)
Translates to: QEGMFQLRFLALSRFSYYRAGVD*HMALRI
Trigger: GATCCTCAAGGCCATATGCAAGTCCACTCCAGCTCT...ATAGTATGAGAAACGTGATAAAGCCAAGAACCTTAACTGAAACATGCCCTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS-3UTR CAA 90 bp GAATCAGTTCAGAGATGGCAGCTGAGGAGTCTTATAATACTTCTGACAGGAAATCAACTCGTCTATTTCTaGAGGGGTGAGCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: ESVQRWQLRSLIILLTGNQLVYF*RGELCK
Trigger: TTTGCAGAGCTCACCCCTCAAGAAATAGACGAGTTG...ATTTCCTGTCAGAAGTATTATAAGACTCCTCAGCTGCCATCTCTGAACTGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023048.12
ENSMUST00000229138.2
CDS CAA 90 bp CGCAGGAAGCTCCGGAGCTCAGCACATATGTCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCAGCAGGGATGGCTGCCCGGTTCCGG +
Preference number: 6 (lower is better)
Translates to: RRKLRSSAHMSTAAC*ARACSPAGMAARFR
Trigger: CCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAGCTTCCTGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 72 bp CTCCGGAGCTCAGCACATATGTCCACCGCAGCTTGCTaGGCCCGAGCCTGCTCTCCAGCAGGGATGGCTGCC +
Preference number: 6 (lower is better)
Translates to: LRSSAHMSTAAC*ARACSPAGMAA
Trigger: GGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 72 bp GAAGCTCCGGAGCTCAGCACATATGTCCACCGCAGCTaGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATGGC +
Preference number: 6 (lower is better)
Translates to: EAPELSTYVHRS*LGPSLLSSRDG
Trigger: GCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS GCA 72 bp AAGCTCCGGAGCTCAGCACATATGTCCACCGCAGCTTaGTTGGCCCGAGCCTGCTCTCCAGCAGGGATGGCT +
Preference number: 6 (lower is better)
Translates to: KLRSSAHMSTAA*LARACSPAGMA
Trigger: AGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACATATGTGCTGAGCTCCGGAGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 90 bp GTGGGAAGGGTCTGCAGGGACCGGCTCAGGCCTGCCTTCATGTCCTaGTTCAATAGGCGAGGAGAGCCCATCCAGTTTGGCTCCTCCCAG +
Preference number: 6 (lower is better)
Translates to: VGRVCRDRLRPAFMS*FNRRGEPIQFGSSQ
Trigger: CTGGGAGGAGCCAAACTGGATGGGCTCTCCTCGCCTATTGAACAAGGACATGAAGGCAGGCCTGAGCCGGTCCCTGCAGACCCTTCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS CAA 72 bp GTCTGCAGGGACCGGCTCAGGCCTGCCTTCATGTCCTaGTTCAATAGGCGAGGAGAGCCCATCCAGTTTGGC +
Preference number: 6 (lower is better)
Translates to: VCRDRLRPAFMS*FNRRGEPIQFG
Trigger: GCCAAACTGGATGGGCTCTCCTCGCCTATTGAACAAGGACATGAAGGCAGGCCTGAGCCGGTCCCTGCAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS CAA 90 bp AGGCTGCCACTCAAGTACATGTCCCGAAGTGGCATATCAGGCAGCTaGGCCCGCAGGAAGCTCCGGAGCTCAGCACATATGTCCACCGCA +
Preference number: 6 (lower is better)
Translates to: RLPLKYMSRSGISGS*ARRKLRSSAHMSTA
Trigger: TGCGGTGGACATATGTGCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGAGTGGCAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp GGCAGAATGTATCTGTGTCAAAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACCGGCTCAGGCCTGCCT +
Preference number: 6 (lower is better)
Translates to: GRMYLCQRQKSL*EGSAGTGSGLP
Trigger: AGGCAGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCTTTGACACAGATACATTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp TACCTGGCCCCTCCTGGCCAATGGTTTGGGCCGGGGTaGGCAGAATGTATCTGTGTCAAAGGCAGAAGAGTC +
Preference number: 6 (lower is better)
Translates to: YLAPPGQWFGPG*AECICVKGRRV
Trigger: GACTCTTCTGCCTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp CAGCTTGCTTGGCCCGAGCCTGCTCTCCAGCAGGGATaGCTGCCCGGTTCCGGTAGTAAGAAAGAAGTTTCT +
Preference number: 6 (lower is better)
Translates to: QLAWPEPALQQG*LPGSGSKKEVS
Trigger: AGAAACTTCTTTCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS GCA 72 bp AGGGGCACTGATTGCCCGGTCATACATCCGCTTAACTaGCAGTGTGGCAATGCCCAACATAGCTGCTCCACC +
Preference number: 6 (lower is better)
Translates to: RGTDCPVIHPLN*QCGNAQHSCST
Trigger: GGTGGAGCAGCTATGTTGGGCATTGCCACACTGGCAGTTAAGCGGATGTATGACCGGGCAATCAGTGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS CCA 72 bp TCTTCAAGTCTACCTGGCCCCTCCTGGCCAATGGTTTaGGCCGGGGTGGGCAGAATGTATCTGTGTCAAAGG +
Preference number: 6 (lower is better)
Translates to: SSSLPGPSWPMV*AGVGRMYLCQR
Trigger: CCTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp AAGAAGTTTCTCCTGTGTCAAAGGCAGAAGAGTCTGTaGGAAGGGTCTGCAGGGACCGGCTCAGGCCTGCCT +
Preference number: 6 (lower is better)
Translates to: KKFLLCQRQKSL*EGSAGTGSGLP
Trigger: AGGCAGGCCTGAGCCGGTCCCTGCAGACCCTTCCCACAGACTCTTCTGCCTTTGACACAGGAGAAACTTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228788.3
CDS CAA 72 bp CTCAAGTACATGTCCCGAAGTGGCATATCAGGCAGCTaGGCCCGCAGGAAGCTCCGGAGCTCAGCACATATG +
Preference number: 6 (lower is better)
Translates to: LKYMSRSGISGS*ARRKLRSSAHM
Trigger: CATATGTGCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 90 bp AGTCGTGACTTCTTCAAGTCTACCTGGCCCCTCCTGGCCAATGGTTaGGGCCGGGGTGGGCAGAATGTATCTGTGTCAAAGGCAGAAGAG +
Preference number: 6 (lower is better)
Translates to: SRDFFKSTWPLLANG*GRGGQNVSVSKAEE
Trigger: CTCTTCTGCCTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp TCAAGTACATGTCCCGAAGTGGCATATCAGGCAGCTTaGCCCGCAGGAAGCTCCGGAGCTCAGCACATATGT +
Preference number: 6 (lower is better)
Translates to: SSTCPEVAYQAA*PAGSSGAQHIC
Trigger: ACATATGTGCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 72 bp TTCTTCAAGTCTACCTGGCCCCTCCTGGCCAATGGTTaGGGCCGGGGTGGGCAGAATGTATCTGTGTCAAAG +
Preference number: 6 (lower is better)
Translates to: FFKSTWPLLANG*GRGGQNVSVSK
Trigger: CTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACCATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS TCA 72 bp AGAAAGAAGTTTCTCCTGCAGGGACATGCGGAGTCGTaGCTTCTTCAAGTCTACCTGGCCCCTCCTGGCCAA +
Preference number: 6 (lower is better)
Translates to: RKKFLLQGHAES*LLQVYLAPPGQ
Trigger: TTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CCA 72 bp CCAGCACCAGCCGGGCATTGGAGAGCACAAAATCGATaGCCGTACCAATGCCATTGTCATCCTTCTTCCCTT +
Preference number: 6 (lower is better)
Translates to: PAPAGHWRAQNR*PYQCHCHPSSL
Trigger: AAGGGAAGAAGGATGACAATGGCATTGGTACGGCCATCGATTTTGTGCTCTCCAATGCCCGGCTGGTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2
CDS GCA 72 bp TCCGGTAGTAAGAAAGAAGTTTCTCCTGCAGGGACATaGGGAGTCGTGACTTCTTCAAGTCTACCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: SGSKKEVSPAGT*GVVTSSSLPGP
Trigger: GGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAAACTTCTTTCTTACTACCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000229138.2
CDS CAA 72 bp TTGGAGAGCACAAAATCGATGGCCGTACCAATGCCATaGTCATCCTTCTTCCCTTTGCGCTCACCAGCGCCT +
Preference number: 6 (lower is better)
Translates to: LESTKSMAVPMP*SSFFPLRSPAP
Trigger: AGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGACAATGGCATTGGTACGGCCATCGATTTTGTGCTCTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023048.12
ENSMUST00000166030.2
ENSMUST00000228788.3
ENSMUST00000229138.2