RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MIDEAS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042507

Ensembl transcript IDs: ENSMUST00000046266.13, ENSMUST00000110294.2, ENSMUST00000220974.2

Found 433 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCACAGCCTTCCAGGTCCTCTGCGGAAGGAGGAACAATGCTGCCATaGGGCGAGCTTGTGCTTGGCTTGCCGTGGTGGCTTACTAAGGAC +
Preference number: 1 (lower is better)
Translates to: AQPSRSSAEGGTMLP*GELVLGLPWWLTKD
Trigger: GTCCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGACCTGGAAGGCTGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 90 bp AGTCTGCACAGCCTTCCAGGTCCTCTGCGGAAGGAGGAACAATGCTaGCATGGGGCGAGCTTGTGCTTGGCTTGCCGTGGTGGCTTACTA +
Preference number: 1 (lower is better)
Translates to: SLHSLPGPLRKEEQC*HGASLCLACRGGLL
Trigger: TAGTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGACCTGGAAGGCTGTGCAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 90 bp GGTGGGTGGGTGGGTACTTTAGCTCTAAGGGGGCTGCTGAAGGCTTaGAGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAA +
Preference number: 1 (lower is better)
Translates to: GGWVGTLALRGLLKA*RTAVRARDLRDGPE
Trigger: TTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCTAAAGTACCCACCCACCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 90 bp ACAGAAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTaGTGGCTTCCTGTGACTGATAACACTCCCCGCCTTCCCAGCCCG +
Preference number: 1 (lower is better)
Translates to: TEKAGQRPAFDLTHI*WLPVTDNTPRLPSP
Trigger: CGGGCTGGGAAGGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 90 bp AGCAGAGATCAGAGAAGCAGCTGTAGAGCTCTAGCCCATTCCAAGTaGCCCGGCCTCTCTAGGCTCCGGGAAAGCAGAACTCGGGACCAA +
Preference number: 1 (lower is better)
Translates to: SRDQRSSCRALAHSK*PGLSRLRESRTRDQ
Trigger: TTGGTCCCGAGTTCTGCTTTCCCGGAGCCTAGAGAGGCCGGGCCACTTGGAATGGGCTAGAGCTCTACAGCTGCTTCTCTGATCTCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 90 bp GAAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTaGCTTCCTGTGACTGATAACACTCCCCGCCTTCCCAGCCCGATC +
Preference number: 1 (lower is better)
Translates to: EKAGQRPAFDLTHIC*LPVTDNTPRLPSPI
Trigger: GATCGGGCTGGGAAGGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 90 bp GACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGTaGCTGATAACACTCCCCGCCTTCCCAGCCCGATCAGTTTCTGTC +
Preference number: 1 (lower is better)
Translates to: DRDLPLTSPTSAGFL*LITLPAFPARSVSV
Trigger: GACAGAAACTGATCGGGCTGGGAAGGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 90 bp CGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTaGCGTGGTGGCTTACTAAGGACCTGGGATGAAAGAGGCACAGAT +
Preference number: 1 (lower is better)
Translates to: RKEEQCCHGASLCLA*RGGLLRTWDERGTD
Trigger: ATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 90 bp GCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTCAGAGATaGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGAAT +
Preference number: 1 (lower is better)
Translates to: AEGLEDSSEGKRPQR*PRTQARSVSWPSLN
Trigger: ATTCAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 90 bp CTCCGCTTTGAACTAGTTCAGTTTCCACACGGGCGCGCTGGAGCATaGGCCCCTCTAAAACAGTGTCTGGTGGGATCACTACCTAAAGGT +
Preference number: 1 (lower is better)
Translates to: LRFELVQFPHGRAGA*APLKQCLVGSLPKG
Trigger: ACCTTTAGGTAGTGATCCCACCAGACACTGTTTTAGAGGGGCCCATGCTCCAGCGCGCCCGTGTGGAAACTGAACTAGTTCAAAGCGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGAGAGGTTCCAGGGACTaGGGTGCTGGGGAGCCCGGC +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLRGSRD*GAGEPG
Trigger: GCCGGGCTCCCCAGCACCCCAGTCCCTGGAACCTCT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGGGCGAGCTTGTGCTTaGCTTGCCGTGGTGGCTTAC +
Preference number: 2 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRGRACA*LAVVAY
Trigger: GTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGGGCGAGCTTGTGCTTaGCTTGCCGTGGTGGCTTAC +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPGRACA*LAVVAY
Trigger: GTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCCAGGGCCATGGAACTaGGGGAGGGCTTGGGGATGC +
Preference number: 2 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLPGPWN*GRAWGC
Trigger: GCATCCCCAAGCCCTCCCCCAGTTCCATGGCCCTGG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CAA 90 bp CCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTaGGCTTGCCGTGGTGGCTTACTAAGGACCTGGGATGAAAGAGGC +
Preference number: 2 (lower is better)
Translates to: PLRKEEQCCHGASLC*ACRGGLLRTWDERG
Trigger: GCCTCTTTCATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTAGAGCAAAGTCCAAGTaGCCCTCTCCTGGCCCCTTC +
Preference number: 2 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLRAKSK*PSPGPF
Trigger: GAAGGGGCCAGGAGAGGGTCACTTGGACTTTGCTCT...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTCTGCTGGCTTCCTGTaGCTGATAACACTCCCCGCC +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGSAGFL*LITLPA
Trigger: GGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTGGGGGACAGGCAGGGTaGCACTGTATAGGGACGTTA +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGGGQAG*HCIGTL
Trigger: TAACGTCCCTATACAGTGTCACCCTGCCTGTCCCCC...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTCTCTAGGACCTGCTTaGGGCTCCTTTAGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGSLGPA*GSFSSL
Trigger: GAGGCTGCTAAAGGAGCCTCAAGCAGGTCCTAGAGA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGCTTTAGGCCCCTACTaGACTGGAAAGCGAAGGGGA +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPALGPY*TGKRRG
Trigger: TCCCCTTCGCTTTCCAGTTCAGTAGGGGCCTAAAGC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTTGTCATGGCCTTCTCTaGATGCAGGTGGAAGCTGGG +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPCHGLL*MQVEAG
Trigger: CCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACA...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGCCTTCCAGGTCCTCTaGGGAAGGAGGAACAATGCT +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPAFQVL*GRRNNA
Trigger: AGCATTGTTCCTCCTTCCGCAGAGGACCTGGAAGGC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTCTCGGGCAGAGCTCTaGATCTTCTGGCCTCTGAAC +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGSRAEL*IFWPLN
Trigger: GTTCAGAGGCCAGAAGATGCAGAGCTCTGCCCGAGA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTAGGCAAGAAGGAAGCTaGCACCAAAGAGCAGGCCAG +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGRQEGS*HQRAGQ
Trigger: CTGGCCTGCTCTTTGGTGCCAGCTTCCTTCTTGCCT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTATGCACTTGGACCTCTaGAAAGCAAGAGGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPMHLDL*KARGPW
Trigger: CCAGGGGCCTCTTGCTTTCCAGAGGTCCAAGTGCAT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTTCTCTGAATGCAGGTaGAAGCTGGGGGACAGGCAG +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGFSECR*KLGDRQ
Trigger: CTGCCTGTCCCCCAGCTTCCACCTGCATTCAGAGAA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGCTTTAGGCCCCTACTaGACTGGAAAGCGAAGGGGA +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLALGPY*TGKRRG
Trigger: TCCCCTTCGCTTTCCAGTTCAGTAGGGGCCTAAAGC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTCTCGGGCAGAGCTCTaGATCTTCTGGCCTCTGAAC +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLSRAEL*IFWPLN
Trigger: GTTCAGAGGCCAGAAGATGCAGAGCTCTGCCCGAGA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGAGTTTCTGTCATTCCTaGGGCCAAGAGCCACAAGGT +
Preference number: 2 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRSFCHS*GQEPQG
Trigger: ACCTTGTGGCTCTTGGCCGCAGGAATGACAGAAACT...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGCTCACCCACATCTGCTaGCTTCCTGTGACTGATAAC +
Preference number: 2 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRLTHIC*LPVTDN
Trigger: GTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAG...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTGCCGGGGTGGGAGGTaGGGCGGCAAGGACGGTGGG +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRCRGGR*GGKDGG
Trigger: CCCACCGTCCTTGCCGCCCCACCTCCCACCCCGGCA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGACTAAGGACCTGGGATaGAAGAGGCACAGATGCAAC +
Preference number: 2 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLTKDLG*KRHRCN
Trigger: GTTGCATCTGTGCCTCTTTCATCCCAGGTCCTTAGT...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGTCCACCAAGGGGCCTaGGCCAGATATGGTTTAAAT +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPVHQGA*ARYGLN
Trigger: ATTTAAACCATATCTGGCTCAGGCCCCTTGGTGGAC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTGTCCACCAAGGGGCCTaGGCCAGATATGGTTTAAAT +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGVHQGA*ARYGLN
Trigger: ATTTAAACCATATCTGGCTCAGGCCCCTTGGTGGAC...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGAGCACAGGGCCTCTGTaGCGGGGTGGGAGGTGGGGC +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRSTGPL*RGGRWG
Trigger: GCCCCACCTCCCACCCCGGCACAGAGGCCCTGTGCT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGGCTTACTAAGGACCTaGGATGAAAGAGGCACAGAT +
Preference number: 2 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRGLLRT*DERGTD
Trigger: ATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGATGCACTTGGACCTCTaGAAAGCAAGAGGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLMHLDL*KARGPW
Trigger: CCAGGGGCCTCTTGCTTTCCAGAGGTCCAAGTGCAT...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGACTAAGGACCTGGGATaGAAGAGGCACAGATGCAAC +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLTKDLG*KRHRCN
Trigger: GTTGCATCTGTGCCTCTTTCATCCCAGGTCCTTAGT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCGAACTCCAAACTTCTaGGAAAACTTTGACAGCCCC +
Preference number: 2 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLRTPNF*ENFDSP
Trigger: GGGGCTGTCAAAGTTTTCTCAGAAGTTTGGAGTTCG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTACTCCCTCGAGCATTTaGAAGTACAGAAAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPTPSSI*KYRKGR
Trigger: CCTGCCTTTTCTGTACTTTCAAATGCTCGAGGGAGT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACAGCTTGTGCTTGGCTTaGCGTGGTGGCTTACTAAGG +
Preference number: 2 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHSLCLA*RGGLLR
Trigger: CCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTAGAATTCTGGCCTCTTaGCAACTCCCTCGAGCATTT +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPRILAS*QLPRAF
Trigger: AAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGGCTTACTAAGGACCTaGGATGAAAGAGGCACAGAT +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPGLLRT*DERGTD
Trigger: ATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGGGACCCCAGGGCCATaGAACTGGGGGAGGGCTTGG +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVGTPGP*NWGRAW
Trigger: CCAAGCCCTCCCCCAGTTCCATGGCCCTGGGGTCCC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGACTCCCTCGAGCATTTaGAAGTACAGAAAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLTPSSI*KYRKGR
Trigger: CCTGCCTTTTCTGTACTTTCAAATGCTCGAGGGAGT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCGAACTCCAAACTTCTaGGAAAACTTTGACAGCCCC +
Preference number: 2 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLRTPNF*ENFDSP
Trigger: GGGGCTGTCAAAGTTTTCTCAGAAGTTTGGAGTTCG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTGGGATAAATGCACTTaGACCTCTGGAAAGCAAGAG +
Preference number: 2 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLWDKCT*TSGKQE
Trigger: CTCTTGCTTTCCAGAGGTCCAAGTGCATTTATCCCA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGTGGCACTTTGGGGCTaGGCTGTGAAGGCACGCGTT +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVVALWG*AVKARV
Trigger: AACGCGTGCCTTCACAGCTCAGCCCCAAAGTGCCAC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGTGGGATAAATGCACTTaGACCTCTGGAAAGCAAGAG +
Preference number: 2 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLWDKCT*TSGKQE
Trigger: CTCTTGCTTTCCAGAGGTCCAAGTGCATTTATCCCA...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAGCATCTTCTGGCCTCTaGACAGTTCCTCTCCGTGTA +
Preference number: 2 (lower is better)
Translates to: NPISISNSQRAVGYFRSLASSGL*TVPLRV
Trigger: TACACGGAGAGGAACTGTTCAGAGGCCAGAAGATGC...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTAACTGGGGGAGGGCTTaGGGATGCCAAAAAGGTGCC +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVNWGRA*GCQKGA
Trigger: GGCACCTTTTTGGCATCCCCAAGCCCTCCCCCAGTT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTATTCCAAGCCAAATATaGTTTCTTCAAGCCAGAATC +
Preference number: 2 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGIPSQI*FLQARI
Trigger: GATTCTGGCTTGAAGAAACCATATTTGGCTTGGAAT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTATTCCAAGCCAAATATaGTTTCTTCAAGCCAGAATC +
Preference number: 2 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPIPSQI*FLQARI
Trigger: GATTCTGGCTTGAAGAAACCATATTTGGCTTGGAAT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTCTCTAGGACCTGCTTaGGGCTCCTTTAGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRSLGPA*GSFSSL
Trigger: GAGGCTGCTAAAGGAGCCTCAAGCAGGTCCTAGAGA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGATGGCCTTCTCTGAATaGAGGTGGAAGCTGGGGGAC +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRMAFSE*RWKLGD
Trigger: GTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCAT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTAGGCAAGAAGGAAGCTaGCACCAAAGAGCAGGCCAG +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVRQEGS*HQRAGQ
Trigger: CTGGCCTGCTCTTTGGTGCCAGCTTCCTTCTTGCCT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGACCTCACCCACATCTaGTGGCTTCCTGTGACTGAT +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRDLTHI*WLPVTD
Trigger: ATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGACCTCACCCACATCTaGTGGCTTCCTGTGACTGAT +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVDLTHI*WLPVTD
Trigger: ATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGCACGGTCAGTGTCATaGCCTTCTCTGAATGCAGGT +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRARSVS*PSLNAG
Trigger: ACCTGCATTCAGAGAAGGCCATGACACTGACCGTGC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAAGCTTGTGCTTGGCTTaGCGTGGTGGCTTACTAAGG +
Preference number: 2 (lower is better)
Translates to: KTRILASCQLPRAFESTESLCLA*RGGLLR
Trigger: CCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCT...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGAGCTCTGCATCTTCTaGCCTCTGAACAGTTCCTCT +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVELCIF*PLNSSS
Trigger: AGAGGAACTGTTCAGAGGCCAGAAGATGCAGAGCTC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCTCACCCACATCTGCTaGCTTCCTGTGACTGATAAC +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRLTHIC*LPVTDN
Trigger: GTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR TCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATGTGAATATCAACATTaGGTGGGGTGCGGTGGGATC +
Preference number: 2 (lower is better)
Translates to: KTRILASCQLPRAFESTECEYQH*VGCGGI
Trigger: GATCCCACCGCACCCCACTCAATGTTGATATTCACA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGAATATCAACATTGAGTaGGGTGCGGTGGGATCAGCT +
Preference number: 2 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRNINIE*GAVGSA
Trigger: AGCTGATCCCACCGCACCCCACTCAATGTTGATATT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAAAAGGTGCCTTATTTTaGGATAAATGCACTTGGACC +
Preference number: 2 (lower is better)
Translates to: NPISISNSQRAVGYFRSLKGALF*DKCTWT
Trigger: GGTCCAAGTGCATTTATCCCAAAATAAGGCACCTTT...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTAAAGGTGCCTTATTTTaGGATAAATGCACTTGGACC +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVKGALF*DKCTWT
Trigger: GGTCCAAGTGCATTTATCCCAAAATAAGGCACCTTT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTTTATTTTGGGATAAATaGACTTGGACCTCTGGAAAG +
Preference number: 2 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVLFWDK*TWTSGK
Trigger: CTTTCCAGAGGTCCAAGTGCATTTATCCCAAAATAA...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 72 bp GCAATCCCTTTAGACATCATGAGCACAGGGCCTCTGTaGCGGGGTGGGAGGTGGGGCGGCAAGGACGGTGGG +
Preference number: 3 (lower is better)
Translates to: AIPLDIMSTGPL*RGGRWGGKDGG
Trigger: CCCACCGTCCTTGCCGCCCCACCTCCCACCCCGGCACAGAGGCCCTGTGCTCATGATGTCTAAAGGGATTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp GACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTaGGGTGCTGGGGAGCCCGGCAATAGGATCCAGCAG +
Preference number: 3 (lower is better)
Translates to: DPLLAPSRGSRD*GAGEPGNRIQQ
Trigger: CTGCTGGATCCTATTGCCGGGCTCCCCAGCACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGGGGCGAGCTTGTGCTaGGCTTGCCGTGGTGGCTTA +
Preference number: 3 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLGASLC*ACRGGL
Trigger: TAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 72 bp AGCCTTCCAGGTCCTCTGCGGAAGGAGGAACAATGCTaGCATGGGGCGAGCTTGTGCTTGGCTTGCCGTGGT +
Preference number: 3 (lower is better)
Translates to: SLPGPLRKEEQC*HGASLCLACRG
Trigger: ACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGACCTGGAAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp TCCAGGTCCTCTGCGGAAGGAGGAACAATGCTGCCATaGGGCGAGCTTGTGCTTGGCTTGCCGTGGTGGCTT +
Preference number: 3 (lower is better)
Translates to: SRSSAEGGTMLP*GELVLGLPWWL
Trigger: AAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGACCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp CACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTaGGGCTCCTTTAGCAGCCTCCGGGACTCAAAGGTA +
Preference number: 3 (lower is better)
Translates to: HQRAGQASLGPA*GSFSSLRDSKV
Trigger: TACCTTTGAGTCCCGGAGGCTGCTAAAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp CTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGTaGCTGATAACACTCCCCGCCTTCCCAGCCCGATCA +
Preference number: 3 (lower is better)
Translates to: LPLTSPTSAGFL*LITLPAFPARS
Trigger: TGATCGGGCTGGGAAGGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp CAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATaGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACA +
Preference number: 3 (lower is better)
Translates to: QRWPRTQARSVS*PSLNAGGSWGT
Trigger: TGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 72 bp GCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTaGTGGCTTCCTGTGACTGATAACACTCCCCGCCTT +
Preference number: 3 (lower is better)
Translates to: AGQRPAFDLTHI*WLPVTDNTPRL
Trigger: AAGGCGGGGAGTGTTATCAGTCACAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp TTTGTTCTGCAGAGCAAAGTCCAAGTGACCCTCTCCTaGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGCTG +
Preference number: 3 (lower is better)
Translates to: FVLQSKVQVTLS*PLLEVPGTGVL
Trigger: CAGCACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTTGCTCTGCAGAACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGAGCTTGTGCTTGGCTaGCCGTGGTGGCTTACTAAG +
Preference number: 3 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLELVLG*PWWLTK
Trigger: CTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCTC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCAAGCAGCAAAGGGGTaGAAAATAGCCCTCCGAGAT +
Preference number: 3 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLQAAKG*KIALRD
Trigger: ATCTCGGAGGGCTATTTTCAACCCCTTTGCTGCTTG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp GCTCCGGGAAAGCAGAACTCGGGACCAACCAGATACTaGGAGAACTGGATCCTGCAGCCCTTAACACTGTCC +
Preference number: 3 (lower is better)
Translates to: APGKQNSGPTRY*ENWILQPLTLS
Trigger: GGACAGTGTTAAGGGCTGCAGGATCCAGTTCTCTCAGTATCTGGTTGGTCCCGAGTTCTGCTTTCCCGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp GAACTAGTTCAGTTTCCACACGGGCGCGCTGGAGCATaGGCCCCTCTAAAACAGTGTCTGGTGGGATCACTA +
Preference number: 3 (lower is better)
Translates to: ELVQFPHGRAGA*APLKQCLVGSL
Trigger: TAGTGATCCCACCAGACACTGTTTTAGAGGGGCCCATGCTCCAGCGCGCCCGTGTGGAAACTGAACTAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGAACTCCCTCGAGCATTaGAAAGTACAGAAAAGGCAG +
Preference number: 3 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRNSLEH*KVQKRQ
Trigger: CTGCCTTTTCTGTACTTTCAAATGCTCGAGGGAGTT...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTATGCTAGTCATGAGTTaGTCAAAAGATCTCTCGGGC +
Preference number: 3 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGMLVMS*SKDLSG
Trigger: GCCCGAGAGATCTTTTGACAAACTCATGACTAGCAT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp TTGTGCTTGGCTTGCCGTGGTGGCTTACTAAGGACCTaGGATGAAAGAGGCACAGATGCAACAGCAGAGATC +
Preference number: 3 (lower is better)
Translates to: LCLACRGGLLRT*DERGTDATAEI
Trigger: GATCTCTGCTGTTGCATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp TGTCAAAAGATCTCTCGGGCAGAGCTCTGCATCTTCTaGCCTCTGAACAGTTCCTCTCCGTGTAGTAGGCTG +
Preference number: 3 (lower is better)
Translates to: CQKISRAELCIF*PLNSSSPCSRL
Trigger: CAGCCTACTACACGGAGAGGAACTGTTCAGAGGCCAGAAGATGCAGAGCTCTGCCCGAGAGATCTTTTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGGGGCGAGCTTGTGCTaGGCTTGCCGTGGTGGCTTA +
Preference number: 3 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRGASLC*ACRGGL
Trigger: TAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCCCTTAACACTGTCCTaGGCCTTTGTAAATAAAAGA +
Preference number: 3 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLPLTLS*AFVNKR
Trigger: TCTTTTATTTACAAAGGCCAAGGACAGTGTTAAGGG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGCCCTTAACACTGTCCTaGGCCTTTGTAAATAAAAGA +
Preference number: 3 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLPLTLS*AFVNKR
Trigger: TCTTTTATTTACAAAGGCCAAGGACAGTGTTAAGGG...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CCA 72 bp GGATTAGTTGGTACCACTGAGCAGAGGAGTCTCATGTaGCTGAAGGATCTCATGTGGCTGCTATCACCTGTC +
Preference number: 3 (lower is better)
Translates to: GLVGTTEQRSLM*LKDLMWLLSPV
Trigger: GACAGGTGATAGCAGCCACATGAGATCCTTCAGCCACATGAGACTCCTCTGCTCAGTGGTACCAACTAATCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAACTTCTGAGAAAACTTaGACAGCCCCAGACGGGCTG +
Preference number: 3 (lower is better)
Translates to: NPISISNSQRAVGYFRSLTSEKT*TAPDGL
Trigger: CAGCCCGTCTGGGGCTGTCAAAGTTTTCTCAGAAGT...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGAACTCCCTCGAGCATTaGAAAGTACAGAAAAGGCAG +
Preference number: 3 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRNSLEH*KVQKRQ
Trigger: CTGCCTTTTCTGTACTTTCAAATGCTCGAGGGAGTT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp CACTGTATAGGGACGTTATTGTCAAACAGGGAGCTCTaGATAGAAAGAACAACAAAAGCCAAGCCCAGTGTG +
Preference number: 3 (lower is better)
Translates to: HCIGTLLSNREL*IERTTKAKPSV
Trigger: CACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGACAATAACGTCCCTATACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp GTGAGCCCCAATAAAAACATTTCAACAGCTGAGGCTTaGGTACTATTGCACTCTTCCTCCTCTGTCTTTAAC +
Preference number: 3 (lower is better)
Translates to: VSPNKNISTAEA*VLLHSSSSVFN
Trigger: GTTAAAGACAGAGGAGGAAGAGTGCAATAGTACTCAAGCCTCAGCTGTTGAAATGTTTTTATTGGGGCTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR GCA 72 bp ATAAAAACATTTCAACAGCTGAGGCTTGAGTACTATTaGACTCTTCCTCCTCTGTCTTTAACATCTGGCACA +
Preference number: 3 (lower is better)
Translates to: IKTFQQLRLEYY*TLPPLSLTSGT
Trigger: TGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAGTACTCAAGCCTCAGCTGTTGAAATGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR TCA 72 bp TTTGCCAGTCTAGTAATAAATAATAACCCAGAACAGTaGGCCCCAATAAAAACATTTCAACAGCTGAGGCTT +
Preference number: 3 (lower is better)
Translates to: FASLVINNNPEQ*APIKTFQQLRL
Trigger: AAGCCTCAGCTGTTGAAATGTTTTTATTGGGGCTCACTGTTCTGGGTTATTATTTATTACTAGACTGGCAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTTGCAGGGCCAGCTCCTaGTTGGTGCCGGCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPCRASS*LVPAPG
Trigger: CCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCA...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGTGGAGGCCACCCCTGTaGGACCTTCGTGGGCCCCGT +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLWRPPL*DLRGPR
Trigger: ACGGGGCCCACGAAGGTCCCACAGGGGTGGCCTCCA...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGCCACAGGCTGGGTGGTaGAGGCCACCCCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLPQAGW*RPPLWD
Trigger: GTCCCACAGGGGTGGCCTCCACCACCCAGCCTGTGG...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCCACAGGCTGGGTGGTaGAGGCCACCCCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLPQAGW*RPPLWD
Trigger: GTCCCACAGGGGTGGCCTCCACCACCCAGCCTGTGG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGGTGGGTCTGTCCCAGTaGCCCACCTGGTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVVGLSQ*PTWCQA
Trigger: GGCCTGGCACCAGGTGGGCCACTGGGACAGACCCAC...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGTCCCGGGAACTCGGGTaGACCGCCTGCGGGTCACGA +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVSRELG*TACGSR
Trigger: TCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGA...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGGGCCAGCTCCTGGTTaGTGCCGGCCCCAGGGAAAA +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRGPAPG*CRPQGK
Trigger: TTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGGCCAGCCACTGTCACTaGTGCCTCCACCTCCGCCAC +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLASHCH*CLHLRH
Trigger: GTGGCGGAGGTGGAGGCATCAGTGACAGTGGCTGGC...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGCCCTGCCGGAAGACCTaGCGGTTCACCTGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLPCRKT*RFTWWP
Trigger: TGGCCACCAGGTGAACCGTCAGGTCTTCCGGCAGGG...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGTGCTGCTGCTGCTTCTaGGGTGGGAAGGAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRCCCCF*GGKEAV
Trigger: CACCGCCTCCTTCCCACCTCAGAAGCAGCAGCAGCA...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGGCCTGCGGGTCACGATaGCTGACGGCTTGTGCTCGG +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVACGSR*LTACAR
Trigger: CCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGC...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGGCAGGGCTGCCGGTTaGTGTTGCTGCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRGRAAG*CCCCCF
Trigger: GAAGCAGCAGCAGCAACAGCAACCGGCAGCCCTGCC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTAGGGGTAAGGGGCCATaGTGCGGTGAGCCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGRGKGP*CGEPGG
Trigger: CCCACCTGGCTCACCGCAGCATGGCCCCTTACCCCT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGGCTTCAGAATGGGGCTaGCCCAGGGTGCCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVASEWG*PRVPGG
Trigger: ACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGC...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTGTGGTGGCTGTTCCTTaGCGGCTGGCTCCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGVVAVP*RLAPGP
Trigger: GGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCAC...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGTCCCAGTGGCCCACCTaGTGCCAGGCCAAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRSQWPT*CQAKVL
Trigger: CAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGA...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGCTCCGCTCAGAGGGGTaGTCAGCAAGGCGCACGGGA +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLLRSEG*SARRTG
Trigger: TCCCGTGCGCCTTGCTGACCACCCCTCTGAGCGGAG...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGTGGGGTTAGAGGGCTaGGGGCCCTGCCGGAAGACC +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLVGLEG*GPCRKT
Trigger: GGTCTTCCGGCAGGGCCCTCAGCCCTCTAACCCCAC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTTGCTGCTGCTGCTTCTaGGGTGGGAAGGAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLCCCCF*GGKEAV
Trigger: CACCGCCTCCTTCCCACCTCAGAAGCAGCAGCAGCA...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGCCTGCGGGTCACGATaGCTGACGGCTTGTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLACGSR*LTACAR
Trigger: CCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTAGACAGGAGGGGCGATaGAAGTGCCCGCCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLRQEGR*KCPPWW
Trigger: CCACCAAGGCGGGCACTTTCATCGCCCCTCCTGTCT...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGGGCAGGGCTGCCGGTTaGTGTTGCTGCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVGRAAG*CCCCCF
Trigger: GAAGCAGCAGCAGCAACAGCAACCGGCAGCCCTGCC...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGCAGTGGCCCACCTGGTaGCAGGCCAAAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVQWPTW*QAKVLV
Trigger: CACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTG...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGTCCGGCCGCGGCCGCTaGTTTGGTTTCCGCATGGAA +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVSGRGR*FGFRME
Trigger: TTCCATGCGGAAACCAAAGCAGCGGCCGCGGCCGGA...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTCCAGCTCCTGGTTGGTaGCGGCCCCAGGGAAAATGC +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGPAPGW*RPQGKC
Trigger: GCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGG...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCCAGCTCCTGGTTGGTaGCGGCCCCAGGGAAAATGC +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLPAPGW*RPQGKC
Trigger: GCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTTCCAGGCCCCGCCCTaGAGCCATCACAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLFQAPP*SHHRAG
Trigger: CCCAGCTCTGTGATGGCTCCAGGGCGGGGCCTGGAA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGAGTTCAAGGGTGCTTaGGGCCTCCCCACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPEFKGA*GLPTSS
Trigger: GCTGGAGGTGGGGAGGCCCCAAGCACCCTTGAACTC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTCCCAGTGGCCCACCTaGTGCCAGGCCAAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGSQWPT*CQAKVL
Trigger: CAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGTCAGCACCTCCGACTTaGGCCACCTCAGTTGGACCC +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRSAPPT*ATSVGP
Trigger: GGGTCCAACTGAGGTGGCCCAAGTCGGAGGTGCTGA...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTCCGCGGCCGCTGCTTTaGTTTCCGCATGGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGPRPLL*FPHGRL
Trigger: GAGCCTTCCATGCGGAAACCAAAGCAGCGGCCGCGG...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGGGCCAGCTCCTGGTTaGTGCCGGCCCCAGGGAAAA +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLGPAPG*CRPQGK
Trigger: TTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGGCTTCTCTGAGGTCTaGATACCTGCAGACCCCGGG +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRGFSEV*IPADPG
Trigger: CCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGAGACAGGAGGGGCGATaGAAGTGCCCGCCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLRQEGR*KCPPWW
Trigger: CCACCAAGGCGGGCACTTTCATCGCCCCTCCTGTCT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGCTCCCTCGGCTTCTCTaGGGTCTGGATACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRLPRLL*GLDTCR
Trigger: TCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGAG...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCATCTGGGGCAGGGCTaGCGGTTGCTGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLHLGQG*RLLLLL
Trigger: CAGCAGCAACAGCAACCGGCAGCCCTGCCCCAGATG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTGTCCCCGAGGCCCCCTaGTCTCATGACCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGVPEAP*SHDLLI
Trigger: AATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGAC...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGGTCTTCAGCCTGAGCTaGAGCATCTGTCCCGGGAAC +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRVFSLS*SICPGN
Trigger: GTTCCCGGGACAGATGCTGCAGCTCAGGCTGAAGAC...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTTTGGCGGCTGGCTCCTaGTCCCCAAAAGGACAACGC +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLLAAGS*SPKGQR
Trigger: GCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAA...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTCTGTTCCTTGGCGGCTaGCTCCTGGTCCCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPLFLGG*LLVPKR
Trigger: CCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAG...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTAGGTACCCCCACACCTaGATGAGGGCTCCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGRYPHT*MRAPFG
Trigger: CCCAAAGGGAGCCCTCATCCAGGTGTGGGGGTACCT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTAGGTACCCCCACACCTaGATGAGGGCTCCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPRYPHT*MRAPFG
Trigger: CCCAAAGGGAGCCCTCATCCAGGTGTGGGGGTACCT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTCTGCTGCTTCTGAGGTaGGAAGGAGGCGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGLLLLR*EGGGGV
Trigger: AACCCCACCGCCTCCTTCCCACCTCAGAAGCAGCAG...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGGCTCCTGCCCAGGTTaGGTGCCAGCTCCATCGAGG +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLGSCPG*VPAPSR
Trigger: CCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCCGCGGCCGCTGCTTTaGTTTCCGCATGGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLPRPLL*FPHGRL
Trigger: GAGCCTTCCATGCGGAAACCAAAGCAGCGGCCGCGG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGTCGATGGGCACTCTTTaGCGTGATAGGAGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRSMGTL*RDRRRG
Trigger: GCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGA...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCAGACCCCGGGGCGTTaGGCTCATGGCTCCGGAGAA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLQTPGR*AHGSGE
Trigger: TTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACCAGACCCCGGGGCGTTaGGCTCATGGCTCCGGAGAA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHQTPGR*AHGSGE
Trigger: TTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTG...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGCACCTGGTGGCCAAATaGCAGCTGGAAGGGTTGCAA +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRHLVAK*QLEGLQ
Trigger: TTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTG...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGTCCCCGAGGCCCCCTaGTCTCATGACCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLVPEAP*SHDLLI
Trigger: AATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGAC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGTCTTCAGCCTGAGCTaGAGCATCTGTCCCGGGAAC +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLVFSLS*SICPGN
Trigger: GTTCCCGGGACAGATGCTGCAGCTCAGGCTGAAGAC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTCATCATGGGGATTTCTaGCTGGAACCGGGTCCCGAC +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGHHGDF*LEPGPD
Trigger: GTCGGGACCCGGTTCCAGGCAGAAATCCCCATGATG...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTCATCATGGGGATTTCTaGCTGGAACCGGGTCCCGAC +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPHHGDF*LEPGPD
Trigger: GTCGGGACCCGGTTCCAGGCAGAAATCCCCATGATG...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGACTCTGCAGTGGTGGTaGCTGTTCCTTGGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLTLQWW*LFLGGW
Trigger: CCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTCTTACTTGGGCCTGCTaGGACAACATGGCTGCCGTG +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGLTWAC*DNMAAV
Trigger: CACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAG...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGAGTTCAAGGGTGCTTaGGGCCTCCCCACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLEFKGA*GLPTSS
Trigger: GCTGGAGGTGGGGAGGCCCCAAGCACCCTTGAACTC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGACGGCTTGTGCTCGGTaGGGTACTGCTCAAGACCAG +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLTACAR*GTAQDQ
Trigger: CTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGT...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTTCGATGGGCACTCTTTaGCGTGATAGGAGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPSMGTL*RDRRRG
Trigger: GCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGA...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTTGGGGACTCTCTTCTaGGAGGAGGCACCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGLGTLF*EEAPLG
Trigger: TCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACAAGGCCATCTGGGGCTaGGGTAGCACGGGCTGTGAA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHKAIWG*GSTGCE
Trigger: TTCACAGCCCGTGCTACCTCAGCCCCAGATGGCCTT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGCCCAGGGAAAATGCTTaGACAGGCAGCTGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLPRENA*TGSCQQ
Trigger: CTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGG...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTTGGCAATGCCCTTGTTaGACAGCTTCCTCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPWQCPC*TASSQP
Trigger: CGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCA...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGTGGCAATGCCCTTGTTaGACAGCTTCCTCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVWQCPC*TASSQP
Trigger: CGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCA...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTCACCTGGTGGCCAAATaGCAGCTGGAAGGGTTGCAA +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPHLVAK*QLEGLQ
Trigger: TTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTG...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGTTGGCGGCTGGCTCCTaGTCCCCAAAAGGACAACGC +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLLAAGS*SPKGQR
Trigger: GCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAA...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTCTGAGGGACTGTGGTaGACTCTGCAGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLSEGLW*TLQWWW
Trigger: CCACCACCACTGCAGAGTCCACCACAGTCCCTCAGA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGGGCAGTGTCTGGTTTaGGGGTTTCTTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPGQCLV*GFLGCM
Trigger: CATGCAGCCAAGAAACCCCCAAACCAGACACTGCCC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCTGCTGCTTCTGAGGTaGGAAGGAGGCGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLLLLLR*EGGGGV
Trigger: AACCCCACCGCCTCCTTCCCACCTCAGAAGCAGCAG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGCAGAATTCCCTCCTTaGAGAGACGGCGGGAGCGAC +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLAEFPP*RDGGSD
Trigger: GTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGCACACCTGGAAGTTGTaGCCAACACGCTTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRHTWKL*PTRFSA
Trigger: AGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTG...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACTCAGCACCTCCGACTTaGGCCACCTCAGTTGGACCC +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHSAPPT*ATSVGP
Trigger: GGGTCCAACTGAGGTGGCCCAAGTCGGAGGTGCTGA...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCGATGCTCACAGGGGTaGCCTCCCCCATCACAGAGA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLRCSQG*PPPSQR
Trigger: TCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGCTCCCCTTCCAACTTaGCGTTCAGGTCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLAPLPT*RSGLQP
Trigger: AGGCTGAAGACCTGAACGTCAAGTTGGAAGGGGAGC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGGCTCTGGTAAGGGGTaGTGTTGGAGTAGACAGGAG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLGSGKG*CWSRQE
Trigger: CTCCTGTCTACTCCAACATCACCCCTTACCAGAGCC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACCTCCCTCGGCTTCTCTaGGGTCTGGATACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHLPRLL*GLDTCR
Trigger: TCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGAG...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACTGTGAAGCAGGGTCCTaGAGGAGAGCCTTGCGCAGT +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHCEAGS*RRALRS
Trigger: ACTGCGCAAGGCTCTCCTGCAGGACCCTGCTTCACA...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACTGGTGGACTCTGCAGTaGTGGTGGCTGTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHWWTLQ*WWLFLG
Trigger: GCCAAGGAACAGCCACCACCACTGCAGAGTCCACCA...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAGAGTGGGGTGGGGGCTaGCCAGGTTGCTGCTGCCAG +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLEWGGG*PGCCCQ
Trigger: CTGGCAGCAGCAACCTGGCCAGCCCCCACCCCACTC...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCACACCTGGAAGTTGTaGCCAACACGCTTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLHTWKL*PTRFSA
Trigger: AGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACATGGGGATTTCTGCCTaGAACCGGGTCCCGACGTTG +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHMGISA*NRVPTL
Trigger: CAACGTCGGGACCCGGTTCCAGGCAGAAATCCCCAT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCTCGGTCTCTCATCATaGGGATTTCTGCCTGGAACC +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLLGLSS*GFLPGT
Trigger: GGTTCCAGGCAGAAATCCCCATGATGAGAGACCGAG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CAA 72 bp AAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTaGGCTTGCCGTGGTGGCTTACTAAGGACCTGGGAT +
Preference number: 4 (lower is better)
Translates to: KEEQCCHGASLC*ACRGGLLRTWD
Trigger: ATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACGCTCCCCTTCCAACTTaGCGTTCAGGTCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHAPLPT*RSGLQP
Trigger: AGGCTGAAGACCTGAACGTCAAGTTGGAAGGGGAGC...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTACCCTTGGGAACTTCTaGGAAGTCTTAACGTCCACC +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPTLGNF*EVLTST
Trigger: GGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGT...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGCCAGCTGGAAGGGTTaGAAGGGCAGTGTCTGGTTT +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLASWKG*KGSVWF
Trigger: AAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGTCTGCTTCTCCCAGCTaGTCTCAAGATGTTCCCATG +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVSASPS*SQDVPM
Trigger: CATGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGA...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACCGGCCCCAGGGAAAATaGTTGAACAGGCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHRPQGK*LNRQLS
Trigger: TGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCG...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCGGCCCCAGGGAAAATaGTTGAACAGGCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLRPQGK*LNRQLS
Trigger: TGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGTTTACCGAGCTTACTTaGGCCTGCTGGGACAACATG +
Preference number: 4 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVFTELT*ACWDNM
Trigger: CATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAA...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTTTTACCGAGCTTACTTaGGCCTGCTGGGACAACATG +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLFTELT*ACWDNM
Trigger: CATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAA...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGGGCAGTGTCTGGTTTaGGGGTTTCTTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLGQCLV*GFLGCM
Trigger: CATGCAGCCAAGAAACCCCCAAACCAGACACTGCCC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTGCAAGGGCAGTGTCTaGTTTGGGGGTTTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLCKGSV*FGGFLA
Trigger: AGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTAGCCTTGCGCAGTTCTaGGTTCATATCTGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGSLAQF*VHIWVV
Trigger: CACAACCCAGATATGAACCCAGAACTGCGCAAGGCT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACAGCAAATTAGCCTCCTaGGACACCCTGCGTCTCCGT +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHSKLAS*DTLRLR
Trigger: ACGGAGACGCAGGGTGTCCCAGGAGGCTAATTTGCT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTTGCAGGGCCAGCTCCTaGTTGGTGCCGGCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVCRASS*LVPAPG
Trigger: CCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCA...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGACCTCAACCTCCTCTTaGCCTGACTTCTCGTCACCG +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLTSTSS*PDFSSP
Trigger: CGGTGACGAGAAGTCAGGCCAAGAGGAGGTTGAGGT...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCAAAAGGACAACGCTTaGGTTTACTCTGAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLQKDNA*VYSEPW
Trigger: CCAAGGCTCAGAGTAAACGCAAGCGTTGTCCTTTTG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTTTTGTTCCCCTTCAGTaGCTCCGGGTGGTTATAGTA +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPFVPLQ*LRVVIV
Trigger: TACTATAACCACCCGGAGGCACTGAAGGGGAACAAA...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATCCGGCCGCGGCCGCTaGTTTGGTTTCCGCATGGAA +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLSGRGR*FGFRME
Trigger: TTCCATGCGGAAACCAAAGCAGCGGCCGCGGCCGGA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGAGATGTTCCCATGGCTaGCACACCAAGTCAGCCTTA +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLRCSHG*HTKSAL
Trigger: TAAGGCTGACTTGGTGTGGCAGCCATGGGAACATCT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATCACGCCCCTCCTCCTaGTCTCCCTTCTCCTGGGTG +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLSRPSS*SPFSWV
Trigger: CACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTCTTCTTCTCTTGCTCTaGGTGACTCTTCATGTGAGC +
Preference number: 4 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPLLLLL*VTLHVS
Trigger: GCTCACATGAAGAGTCACGCAGAGCAAGAGAAGAAG...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGTTTACTCTGAGCCTTaGACTGGGCCTGGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLVYSEP*TGPGGS
Trigger: TGAACCTCCAGGCCCAGTCCAAGGCTCAGAGTAAAC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACGTTTACTCTGAGCCTTaGACTGGGCCTGGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHVYSEP*TGPGGS
Trigger: TGAACCTCCAGGCCCAGTCCAAGGCTCAGAGTAAAC...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTGGAGGCCACCCCTGTaGGACCTTCGTGGGCCCCGT +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRWRPPL*DLRGPR
Trigger: ACGGGGCCCACGAAGGTCCCACAGGGGTGGCCTCCA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGACAACATGGCTGCCGTaGTCCTCTCAGATCCATACA +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLTTWLP*SSQIHT
Trigger: TGTATGGATCTGAGAGGACCACGGCAGCCATGTTGT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGAGTGGGGTGGGGGCTaGCCAGGTTGCTGCTGCCAG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVEWGGG*PGCCCQ
Trigger: CTGGCAGCAGCAACCTGGCCAGCCCCCACCCCACTC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGGTTTGGGGGTTTCTTaGCTGCATGGAAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLGLGVS*LHGKSS
Trigger: TGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGGGTTTGGGGGTTTCTTaGCTGCATGGAAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLGLGVS*LHGKSS
Trigger: TGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACC...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGTGGGTCTGTCCCAGTaGCCCACCTGGTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRVGLSQ*PTWCQA
Trigger: GGCCTGGCACCAGGTGGGCCACTGGGACAGACCCAC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCAGGGTGCCTGGCGGTaGCTGCGGCAGAGACCAGTG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRQGAWR*LRQRPV
Trigger: CACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCAGGGTGCCTGGCGGTaGCTGCGGCAGAGACCAGTG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVQGAWR*LRQRPV
Trigger: CACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGACCAAGTCAGCCTTATaGGGGTCAAAAGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLTKSAL*GSKAAS
Trigger: GCTGGCAGCTTTTGACCCCCATAAGGCTGACTTGGT...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACACCAAGTCAGCCTTATaGGGGTCAAAAGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHTKSAL*GSKAAS
Trigger: GCTGGCAGCTTTTGACCCCCATAAGGCTGACTTGGT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGCCAGCCACTGTCACTaGTGCCTCCACCTCCGCCAC +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRASHCH*CLHLRH
Trigger: GTGGCGGAGGTGGAGGCATCAGTGACAGTGGCTGGC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCCCTGCCGGAAGACCTaGCGGTTCACCTGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVPCRKT*RFTWWP
Trigger: TGGCCACCAGGTGAACCGTCAGGTCTTCCGGCAGGG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGCGGGTCACGATGACTaGCGGCTTGTGCTCGGTGGG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRAGHDD*RLVLGG
Trigger: CCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTCGGGATGTTGCTGGTTaGTATGATGGCATTGAAGTA +
Preference number: 4 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLRDVAG*YDGIEV
Trigger: TACTTCAATGCCATCATATCAACCAGCAACATCCCG...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCAAAAGGACAACGCTTaGGTTTACTCTGAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLQKDNA*VYSEPW
Trigger: CCAAGGCTCAGAGTAAACGCAAGCGTTGTCCTTTTG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGCTTCAGAATGGGGCTaGCCCAGGGTGCCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVASEWG*PRVPGG
Trigger: ACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACAGATGTTCCCATGGCTaGCACACCAAGTCAGCCTTA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHRCSHG*HTKSAL
Trigger: TAAGGCTGACTTGGTGTGGCAGCCATGGGAACATCT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGTCTTCATGTGAGCACTaGGGCTCTTCACCTTGTAAA +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLSSCEH*GSSPCK
Trigger: TTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGA...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCTTCTTCTCTTGCTCTaGGTGACTCTTCATGTGAGC +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLLLLLL*VTLHVS
Trigger: GCTCACATGAAGAGTCACGCAGAGCAAGAGAAGAAG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGTGGTGGCTGTTCCTTaGCGGCTGGCTCCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVVVAVP*RLAPGP
Trigger: GGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCAC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGGTTTCTTGGCTGCATaGAAAGAGTTCAAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLGFLAA*KEFKGA
Trigger: AGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGTTCTGGGTTCATATCTaGGTTGTGGGAAAAGGGGTA +
Preference number: 4 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLFWVHI*VVGKGV
Trigger: TACCCCTTTTCCCACAACCCAGATATGAACCCAGAA...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAGCAGAATTCCCTCCTTaGAGAGACGGCGGGAGCGAC +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLAEFPP*RDGGSD
Trigger: GTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGC...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGGCTCCTGCCCAGGTTaGGTGCCAGCTCCATCGAGG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRGSCPG*VPAPSR
Trigger: CCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATCCCGGGAACTCGGGTaGACCGCCTGCGGGTCACGA +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTESRELG*TACGSR
Trigger: TCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCTCCGCTCAGAGGGGTaGTCAGCAAGGCGCACGGGA +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRLRSEG*SARRTG
Trigger: TCCCGTGCGCCTTGCTGACCACCCCTCTGAGCGGAG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCATCTGGGGCAGGGCTaGCGGTTGCTGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVHLGQG*RLLLLL
Trigger: CAGCAGCAACAGCAACCGGCAGCCCTGCCCCAGATG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCAGTGGCCCACCTGGTaGCAGGCCAAAGTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVQWPTW*QAKVLV
Trigger: CACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGGTAAGGGGCCATGCTaGGGTGAGCCAGGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVGKGPC*GEPGGS
Trigger: AGACCCACCTGGCTCACCGCAGCATGGCCCCTTACC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGTCTGGATCAGCTTCTaGACCAGGAAGAAATCTTTC +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLVWISF*TRKKSF
Trigger: GAAAGATTTCTTCCTGGTGCAGAAGCTGATCCAGAC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTCACGCCCCTCCTCCTaGTCTCCCTTCTCCTGGGTG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRSRPSS*SPFSWV
Trigger: CACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTCTTCATGTGAGCACTaGGGCTCTTCACCTTGTAAA +
Preference number: 4 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLSSCEH*GSSPCK
Trigger: TTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATGGTGGACTCTGCAGTaGTGGTGGCTGTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLWWTLQ*WWLFLG
Trigger: GCCAAGGAACAGCCACCACCACTGCAGAGTCCACCA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATTCCAGGCCCCGCCCTaGAGCCATCACAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEFQAPP*SHHRAG
Trigger: CCCAGCTCTGTGATGGCTCCAGGGCGGGGCCTGGAA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAACGGCTTGTGCTCGGTaGGGTACTGCTCAAGACCAG +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLTACAR*GTAQDQ
Trigger: CTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGT...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATTGGGGACTCTCTTCTaGGAGGAGGCACCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLLGTLF*EEAPLG
Trigger: TCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTAAGGCCATCTGGGGCTaGGGTAGCACGGGCTGTGAA +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVKAIWG*GSTGCE
Trigger: TTCACAGCCCGTGCTACCTCAGCCCCAGATGGCCTT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACCGGGATGTTGCTGGTTaGTATGATGGCATTGAAGTA +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHRDVAG*YDGIEV
Trigger: TACTTCAATGCCATCATATCAACCAGCAACATCCCG...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTACCCAGGGAAAATGCTTaGACAGGCAGCTGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLPRENA*TGSCQQ
Trigger: CTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGG...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAGGTAAGGGGCCATGCTaGGGTGAGCCAGGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEGKGPC*GEPGGS
Trigger: AGACCCACCTGGCTCACCGCAGCATGGCCCCTTACC...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTACTCTGCAGTGGTGGTaGCTGTTCCTTGGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVTLQWW*LFLGGW
Trigger: CCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGTTCTGGGTTCATATCTaGGTTGTGGGAAAAGGGGTA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLFWVHI*VVGKGV
Trigger: TACCCCTTTTCCCACAACCCAGATATGAACCCAGAA...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGGCTTCTCTGAGGTCTaGATACCTGCAGACCCCGGG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRGFSEV*IPADPG
Trigger: CCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTTGTGAAGCAGGGTCCTaGAGGAGAGCCTTGCGCAGT +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVCEAGS*RRALRS
Trigger: ACTGCGCAAGGCTCTCCTGCAGGACCCTGCTTCACA...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCTTACTTGGGCCTGCTaGGACAACATGGCTGCCGTG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRLTWAC*DNMAAV
Trigger: CACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATGCAAGGGCAGTGTCTaGTTTGGGGGTTTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLCKGSV*FGGFLA
Trigger: AGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTATGGGGATTTCTGCCTaGAACCGGGTCCCGACGTTG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVMGISA*NRVPTL
Trigger: CAACGTCGGGACCCGGTTCCAGGCAGAAATCCCCAT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CAA 72 bp AGAGCAGGGCACGAACTCCAAACTTCTGAGAAAACTTaGACAGCCCCAGACGGGCTGTTAACAAGCAGCAAA +
Preference number: 4 (lower is better)
Translates to: RAGHELQTSEKT*TAPDGLLTSSK
Trigger: TTTGCTGCTTGTTAACAGCCCGTCTGGGGCTGTCAAAGTTTTCTCAGAAGTTTGGAGTTCGTGCCCTGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CAA 72 bp CTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTaGAAAGTACAGAAAAGGCAGGACAGAGACCTGCCT +
Preference number: 4 (lower is better)
Translates to: LEFWPLANSLEH*KVQKRQDRDLP
Trigger: AGGCAGGTCTCTGTCCTGCCTTTTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTGGCCAAATGCCAGCTaGAAGGGTTGCAAGGGCAGT +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRWPNAS*KGCKGS
Trigger: ACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGAAGGCAGTTGATGCATaGGGTAGTAGTTCTCAAATA +
Preference number: 4 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLKAVDA*GSSSQI
Trigger: TATTTGAGAACTACTACCCCATGCATCAACTGCCTT...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTAGCAAATTAGCCTCCTaGGACACCCTGCGTCTCCGT +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVSKLAS*DTLRLR
Trigger: ACGGAGACGCAGGGTGTCCCAGGAGGCTAATTTGCT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGACCTCAACCTCCTCTTaGCCTGACTTCTCGTCACCG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRTSTSS*PDFSSP
Trigger: CGGTGACGAGAAGTCAGGCCAAGAGGAGGTTGAGGT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCAGCCTCTCTTCACTTaGGGACTCTCTTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVQPLFT*GLSSGR
Trigger: CCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACGGGAAGGTGTTCTCCTaGTTCTGGGTTTTATTAAAT +
Preference number: 4 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHGKVFS*FWVLLN
Trigger: ATTTAATAAAACCCAGAACCAGGAGAACACCTTCCC...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAGGCTCTGGTAAGGGGTaGTGTTGGAGTAGACAGGAG +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEGSGKG*CWSRQE
Trigger: CTCCTGTCTACTCCAACATCACCCCTTACCAGAGCC...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAGGTTTCTTGGCTGCATaGAAAGAGTTCAAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: NPISISNSQRAVGYFRSLGFLAA*KEFKGA
Trigger: AGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACC...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATGGCCAAATGCCAGCTaGAAGGGTTGCAAGGGCAGT +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEWPNAS*KGCKGS
Trigger: ACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCTCAAGATGTTCCCATaGCTGCCACACCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRLKMFP*LPHQVS
Trigger: GCTGACTTGGTGTGGCAGCCATGGGAACATCTTGAG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAACAGCCTCTCTTCACTTaGGGACTCTCTTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEQPLFT*GLSSGR
Trigger: CCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTG...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR TCA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTACCCTTGGGAACTTCTaGGAAGTCTTAACGTCCACC +
Preference number: 4 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVTLGNF*EVLTST
Trigger: GGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGT...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAGAGCCATCACAGAGCTaGGCCACTTTACCGAGCTTA +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEEPSQS*ATLPSL
Trigger: TAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCTC...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGAGCCTTGCGCAGTTCTaGGTTCATATCTGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRSLAQF*VHIWVV
Trigger: CACAACCCAGATATGAACCCAGAACTGCGCAAGGCT...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAACTCAAGATGTTCCCATaGCTGCCACACCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTELKMFP*LPHQVS
Trigger: GCTGACTTGGTGTGGCAGCCATGGGAACATCTTGAG...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAACAACATGGCTGCCGTaGTCCTCTCAGATCCATACA +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTETTWLP*SSQIHT
Trigger: TGTATGGATCTGAGAGGACCACGGCAGCCATGTTGT...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATTTGTTCCCCTTCAGTaGCTCCGGGTGGTTATAGTA +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEFVPLQ*LRVVIV
Trigger: TACTATAACCACCCGGAGGCACTGAAGGGGAACAAA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR GCA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGTCTGGATCAGCTTCTaGACCAGGAAGAAATCTTTC +
Preference number: 4 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRVWISF*TRKKSF
Trigger: GAAAGATTTCTTCCTGGTGCAGAAGCTGATCCAGAC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
3UTR CAA 72 bp TCCGGGACTCAAAGGTATAAAATGCTAGTCATGAGTTaGTCAAAAGATCTCTCGGGCAGAGCTCTGCATCTT +
Preference number: 4 (lower is better)
Translates to: SGTQRYKMLVMS*SKDLSGRALHL
Trigger: AAGATGCAGAGCTCTGCCCGAGAGATCTTTTGACAAACTCATGACTAGCATTTTATACCTTTGAGTCCCGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CCA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAGGGAAGGTGTTCTCCTaGTTCTGGGTTTTATTAAAT +
Preference number: 4 (lower is better)
Translates to: KTRILASCQLPRAFESTEGKVFS*FWVLLN
Trigger: ATTTAATAAAACCCAGAACCAGGAGAACACCTTCCC...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS CCA 90 bp GCCCGCCGGCAGCGCTCACGCCCCTCCTCCTGCTCTCCCTTCTCCTaGGTGTCTGGCACCTCCTCCTCCCCCTCCTTCCTGGGTTCTGTC +
Preference number: 5 (lower is better)
Translates to: ARRQRSRPSSCSPFS*VSGTSSSPSFLGSV
Trigger: GACAGAACCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGACACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGAGCGCTGCCGGCGGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 90 bp GGCTGCCCCAGGGTGCCTGGCGGTGGCTGCGGCAGAGACCAGTGGTaGAGGAACAGATTGCTCGCGGGCTCCTGCCCAGGTTGGGTGCCA +
Preference number: 5 (lower is better)
Translates to: GCPRVPGGGCGRDQW*RNRLLAGSCPGWVP
Trigger: TGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp TGCCTGGCGGTGGCTGCGGCAGAGACCAGTGGTGAAGGAACAGATTaGTCGCGGGCTCCTGCCCAGGTTGGGTGCCAGCTCCATCGAGGG +
Preference number: 5 (lower is better)
Translates to: CLAVAAAETSGEGTD*SRAPAQVGCQLHRG
Trigger: CCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GGGGTAAGGGGCCATGCTGCGGTGAGCCAGGTGGGTCTGTCCCAGTaGCCCACCTGGTGCCAGGCCAAAGTCCTGGTGCTGTTGCGAAGG +
Preference number: 5 (lower is better)
Translates to: GVRGHAAVSQVGLSQ*PTWCQAKVLVLLRR
Trigger: CCTTCGCAACAGCACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGACAGACCCACCTGGCTCACCGCAGCATGGCCCCTTACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp TCGCGGGCTCCTGCCCAGGTTGGGTGCCAGCTCCATCGAGGGAGTTaGAAGGCAGAATTCCCTCCTTGGAGAGACGGCGGGAGCGACGTG +
Preference number: 5 (lower is better)
Translates to: SRAPAQVGCQLHRGS*KAEFPPWRDGGSDV
Trigger: CACGTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GAATCCCAGGGCTTCAGAATGGGGCTGCCCCAGGGTGCCTGGCGGTaGCTGCGGCAGAGACCAGTGGTGAAGGAACAGATTGCTCGCGGG +
Preference number: 5 (lower is better)
Translates to: ESQGFRMGLPQGAWR*LRQRPVVKEQIARG
Trigger: CCCGCGAGCAATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCCCTGGGATTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 90 bp CAGCATCTGTCCCGGGAACTCGGGTGGACCGCCTGCGGGTCACGATaGCTGACGGCTTGTGCTCGGTGGGGTACTGCTCAAGACCAGTCC +
Preference number: 5 (lower is better)
Translates to: QHLSRELGWTACGSR*LTACARWGTAQDQS
Trigger: GGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGACAGATGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp CGCCTGCGGGTCACGATGACTGACGGCTTGTGCTCGGTGGGGTACTaGTCAAGACCAGTCCCATCCTCGTCAGCACCTCCGACTTGGGCC +
Preference number: 5 (lower is better)
Translates to: RLRVTMTDGLCSVGY*SRPVPSSSAPPTWA
Trigger: GGCCCAAGTCGGAGGTGCTGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp AGCTCCACAGGCTGGGTGGTGGAGGCCACCCCTGTGGGACCTTCGTaGGCCCCGTACTGTTCCTCCTTAGCTCTGAGGGACTGTGGTGGA +
Preference number: 5 (lower is better)
Translates to: SSTGWVVEATPVGPS*APYCSSLALRDCGG
Trigger: TCCACCACAGTCCCTCAGAGCTAAGGAGGAACAGTACGGGGCCCACGAAGGTCCCACAGGGGTGGCCTCCACCACCCAGCCTGTGGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GGGTGCCAGCTCCATCGAGGGAGTTGGAAGGCAGAATTCCCTCCTTaGAGAGACGGCGGGAGCGACGTGGGAAGGCCATCTGGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GCQLHRGSWKAEFPP*RDGGSDVGRPSGAE
Trigger: CTCAGCCCCAGATGGCCTTCCCACGTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGTGGGGGCTGGCCAGGTaGCTGCTGCCAGCCACTGTC +
Preference number: 5 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRWGLAR*LLPATV
Trigger: GACAGTGGCTGGCAGCAGCAACCTGGCCAGCCCCCA...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTGCAGACCCCGGGGCGTaGGGCTCATGGCTCCGGAGA +
Preference number: 5 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGADPGA*GSWLRR
Trigger: TCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGC...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp ATCTGTCCCGGGAACTCGGGTGGACCGCCTGCGGGTCACGATGACTaGCGGCTTGTGCTCGGTGGGGTACTGCTCAAGACCAGTCCCATC +
Preference number: 5 (lower is better)
Translates to: ICPGNSGGPPAGHDD*RLVLGGVLLKTSPI
Trigger: GATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGACAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp GGAACTCGGGTGGACCGCCTGCGGGTCACGATGACTGACGGCTTGTaGTCGGTGGGGTACTGCTCAAGACCAGTCCCATCCTCGTCAGCA +
Preference number: 5 (lower is better)
Translates to: GTRVDRLRVTMTDGL*SVGYCSRPVPSSSA
Trigger: TGCTGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp ATCTGTGACTCCCTCAGTTCTAACGGGAATCCCAGGGCTTCAGAATaGGGCTGCCCCAGGGTGCCTGGCGGTGGCTGCGGCAGAGACCAG +
Preference number: 5 (lower is better)
Translates to: ICDSLSSNGNPRASE*GCPRVPGGGCGRDQ
Trigger: CTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCCCTGGGATTCCCGTTAGAACTGAGGGAGTCACAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTTGGGGGCTGGCCAGGTaGCTGCTGCCAGCCACTGTC +
Preference number: 5 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGWGLAR*LLPATV
Trigger: GACAGTGGCTGGCAGCAGCAACCTGGCCAGCCCCCA...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGCTCTAAGGGGGCTGCTGAAGGCTTGGAGGACAGCAGTGAGGGCAAGAGACCTGGGCTCCTGCCCAGGTaGGGTGCCAGCTCCATCGAG +
Preference number: 5 (lower is better)
Translates to: SSKGAAEGLEDSSEGKRPGLLPR*GASSIE
Trigger: CTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCC...AGGTCTCTTGCCCTCACTGCTGTCCTCCAAGCCTTCAGCAGCCCCCTTAGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTAGGGCCAGCTCCTGGTaGGTGCCGGCCCCAGGGAAA +
Preference number: 5 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGRASSW*VPAPGK
Trigger: TTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp TCCTCTGCGGAAGGAGGAACAATGCTGCCATGGGGCGAGCTTGTGCTTGGCTTGAGGGCCAGCTCCTGGTaGGTGCCGGCCCCAGGGAAA +
Preference number: 5 (lower is better)
Translates to: SSAEGGTMLPWGELVLGLRASSW*VPAPGK
Trigger: TTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCT...CAAGCCAAGCACAAGCTCGCCCCATGGCAGCATTGTTCCTCCTTCCGCAGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp CACTTCGTATCATCTGTCCACAGTCCCCGAGGCCCCCTGCTCTCATaGCCTCCTCATTACCCATGGCGGGAGGCTCCCGCTCCCGACCAT +
Preference number: 5 (lower is better)
Translates to: HFVSSVHSPRGPLLS*PPHYPWREAPAPDH
Trigger: ATGGTCGGGAGCGGGAGCCTCCCGCCATGGGTAATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGACTGTGGACAGATGATACGAAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp CATGCTGCGGTGAGCCAGGTGGGTCTGTCCCAGTGGCCCACCTGGTaGCAGGCCAAAGTCCTGGTGCTGTTGCGAAGGCAGTTGATGCAT +
Preference number: 5 (lower is better)
Translates to: HAAVSQVGLSQWPTW*QAKVLVLLRRQLMH
Trigger: ATGCATCAACTGCCTTCGCAACAGCACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGACAGACCCACCTGGCTCACCGCAGCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp TTCGTGGGCCCCGTACTGTTCCTCCTTAGCTCTGAGGGACTGTGGTaGACTCTGCAGTGGTGGTGGCTGTTCCTTGGCGGCTGGCTCCTG +
Preference number: 5 (lower is better)
Translates to: FVGPVLFLLSSEGLW*TLQWWWLFLGGWLL
Trigger: CAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAGGAGGAACAGTACGGGGCCCACGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp ACCTTCGTGGGCCCCGTACTGTTCCTCCTTAGCTCTGAGGGACTGTaGTGGACTCTGCAGTGGTGGTGGCTGTTCCTTGGCGGCTGGCTC +
Preference number: 5 (lower is better)
Translates to: TFVGPVLFLLSSEGL*WTLQWWWLFLGGWL
Trigger: GAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAGGAGGAACAGTACGGGGCCCACGAAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGAGAGTTCAAGGGTGCTaGGGGCCTCCCCACCTCCAG +
Preference number: 5 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRRVQGC*GPPHLQ
Trigger: CTGGAGGTGGGGAGGCCCCAAGCACCCTTGAACTCT...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp GGCACGGTCAGTGTCATGGCCTTCTCTGAATGCAGGTGGAAGCTGGGGGACAGGCTTGGGCCACCTCAGTaGGACCCACAGTCCTCACGG +
Preference number: 5 (lower is better)
Translates to: GTVSVMAFSECRWKLGDRLGPPQ*DPQSSR
Trigger: CCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAG...CCTGTCCCCCAGCTTCCACCTGCATTCAGAGAAGGCCATGACACTGACCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGCAGACCCCGGGGCGTaGGGCTCATGGCTCCGGAGA +
Preference number: 5 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLADPGA*GSWLRR
Trigger: TCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS GCA 90 bp CTGAGGGCCCTGCCGGAAGACCTGACGGTTCACCTGGTGGCCAAATaGCAGCTGGAAGGGTTGCAAGGGCAGTGTCTGGTTTGGGGGTTT +
Preference number: 5 (lower is better)
Translates to: LRALPEDLTVHLVAK*QLEGLQGQCLVWGF
Trigger: AAACCCCCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGTCAGGTCTTCCGGCAGGGCCCTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp CGCCCTGGAGCCATCACAGAGCTGGGCCACTTTACCGAGCTTACTTaGGCCTGCTGGGACAACATGGCTGCCGTGGTCCTCTCAGATCCA +
Preference number: 5 (lower is better)
Translates to: RPGAITELGHFTELT*ACWDNMAAVVLSDP
Trigger: TGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCTCCAGGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AAAGTCCAAGTGACCCTCTCCTGGCCCCTTCTAGAGGTTCCAGGGACTGGGGTGGGCTGCCGGTTGCTGTaGCTGCTGCTGCTTCTGAGG +
Preference number: 5 (lower is better)
Translates to: KVQVTLSWPLLEVPGTGVGCRLL*LLLLLR
Trigger: CCTCAGAAGCAGCAGCAGCAACAGCAACCGGCAGCC...CACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGGCTGCCGGTTGCTGTaGCTGCTGCTGCTTCTGAGG +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLGCRLL*LLLLLR
Trigger: CCTCAGAAGCAGCAGCAGCAACAGCAACCGGCAGCC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGGCCGCGGCCGCTGCTTaGGTTTCCGCATGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLAAAAA*VSAWKA
Trigger: AGCCTTCCATGCGGAAACCAAAGCAGCGGCCGCGGC...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp GCGGCCGCTGCTTTGGTTTCCGCATGGAAGGCTCCCCTTCCAACTTaGCGTTCAGGTCTTCAGCCTGAGCTGCAGCATCTGTCCCGGGAA +
Preference number: 5 (lower is better)
Translates to: AAAALVSAWKAPLPT*RSGLQPELQHLSRE
Trigger: TTCCCGGGACAGATGCTGCAGCTCAGGCTGAAGACCTGAACGTCAAGTTGGAAGGGGAGCCTTCCATGCGGAAACCAAAGCAGCGGCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 90 bp GTGCAGGGCCAGCTCCTGGTTGGTGCCGGCCCCAGGGAAAATGCTTaGACAGGCAGCTGTCAGCAGGTCATCCACTTGTCTCTGCTTCTC +
Preference number: 5 (lower is better)
Translates to: VQGQLLVGAGPRENA*TGSCQQVIHLSLLL
Trigger: GAGAAGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp AGTGGTGAAGGAACAGATTGCTCGCGGGCTCCTGCCCAGGTTGGGTaGCAGCTCCATCGAGGGAGTTGGAAGGCAGAATTCCCTCCTTGG +
Preference number: 5 (lower is better)
Translates to: SGEGTDCSRAPAQVG*QLHRGSWKAEFPPW
Trigger: CCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GGACTGTGGTGGACTCTGCAGTGGTGGTGGCTGTTCCTTGGCGGCTaGCTCCTGGTCCCCAAAAGGACAACGCTTGCGTTTACTCTGAGC +
Preference number: 5 (lower is better)
Translates to: GLWWTLQWWWLFLGG*LLVPKRTTLAFTLS
Trigger: GCTCAGAGTAAACGCAAGCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp CTTCAGTGCCTCCGGGTGGTTATAGTAGGGAGGTACCCCCACACCTaGATGAGGGCTCCCTTTGGGTCCACCGTAGAGGGGCAGGTGATT +
Preference number: 5 (lower is better)
Translates to: LQCLRVVIVGRYPHT*MRAPFGSTVEGQVI
Trigger: AATCACCTGCCCCTCTACGGTGGACCCAAAGGGAGCCCTCATCCAGGTGTGGGGGTACCTCCCTACTATAACCACCCGGAGGCACTGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GCCAGCTCCACTGCCTTCTGGGCCAGGGTCAGCAAATTAGCCTCCTaGGACACCCTGCGTCTCCGTTTTGTGCTCTGGATCACCCCACTT +
Preference number: 5 (lower is better)
Translates to: ASSTAFWARVSKLAS*DTLRLRFVLWITPL
Trigger: AAGTGGGGTGATCCAGAGCACAAAACGGAGACGCAGGGTGTCCCAGGAGGCTAATTTGCTGACCCTGGCCCAGAAGGCAGTGGAGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp ACCAGTCCCATCCTCGTCAGCACCTCCGACTTGGGCCACCTCAGTTaGACCCACAGTCCTCACGGGAACAGACACAGGAATGATGAGGGG +
Preference number: 5 (lower is better)
Translates to: TSPILVSTSDLGHLS*THSPHGNRHRNDEG
Trigger: CCCCTCATCATTCCTGTGTCTGTTCCCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAGTCGGAGGTGCTGACGAGGATGGGACTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp ACAGGCGGGGTGACTTCAGAGCTATTAGAGCGGAGCAGGGTTCGATaGGCACTCTTTGGCGTGATAGGAGGAGGGGCCGGGATGTTGCTG +
Preference number: 5 (lower is better)
Translates to: TGGVTSELLERSRVR*ALFGVIGGGAGMLL
Trigger: CAGCAACATCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGAACCCTGCTCCGCTCTAATAGCTCTGAAGTCACCCCGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 90 bp GGCACTCTTTGGCGTGATAGGAGGAGGGGCCGGGATGTTGCTGGTTaGTATGATGGCATTGAAGTAGAGGCCAGAGCCTTCCCGGACGGG +
Preference number: 5 (lower is better)
Translates to: GTLWRDRRRGRDVAG*YDGIEVEARAFPDG
Trigger: CCCGTCCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCATATCAACCAGCAACATCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp GGAGCCATCACAGAGCTGGGCCACTTTACCGAGCTTACTTGGGCCTaGTGGGACAACATGGCTGCCGTGGTCCTCTCAGATCCATACACC +
Preference number: 5 (lower is better)
Translates to: GAITELGHFTELTWA*WDNMAAVVLSDPYT
Trigger: GGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp CTTCTCCTCAGAGCCATTGGCATCCTGCATAGAGGCCAGCTCCACTaGCTTCTGGGCCAGGGTCAGCAAATTAGCCTCCTGGGACACCCT +
Preference number: 5 (lower is better)
Translates to: LLLRAIGILHRGQLH*LLGQGQQISLLGHP
Trigger: AGGGTGTCCCAGGAGGCTAATTTGCTGACCCTGGCCCAGAAGGCAGTGGAGCTGGCCTCTATGCAGGATGCCAATGGCTCTGAGGAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp GATAGTGCAGGGCCAGCTCCTGGTTGGTGCCGGCCCCAGGGAAAATaGTTGAACAGGCAGCTGTCAGCAGGTCATCCACTTGTCTCTGCT +
Preference number: 5 (lower is better)
Translates to: DSAGPAPGWCRPQGK*LNRQLSAGHPLVSA
Trigger: AGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGCTCCATCGAGGGAGTaGGAAGGCAGAATTCCCTCC +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLAPSRE*EGRIPS
Trigger: GGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCCCTGCGTCTCCGTTTaGTGCTCTGGATCACCCCAC +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLPCVSV*CSGSPH
Trigger: GTGGGGTGATCCAGAGCACAAAACGGAGACGCAGGG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCTTGGGCCACCTCAGTaGGACCCACAGTCCTCACGG +
Preference number: 5 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLLGPPQ*DPQSSR
Trigger: CCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGACGATGACTGACGGCTaGTGCTCGGTGGGGTACTGC +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLTMTDG*CSVGYC
Trigger: GCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTGGAGGGGCCGGGATGTaGCTGGTTGATATGATGGCA +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLGGAGM*LVDMMA
Trigger: TGCCATCATATCAACCAGCAACATCCCGGCCCCTCC...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTAAGGTGAGCGTCCCGTaGCGGCCGATTTTCACCTGT +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLKVSVP*RPIFTC
Trigger: ACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTT...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS GCA 90 bp GGGCCACTTTACCGAGCTTACTTGGGCCTGCTGGGACAACATGGCTaGCGTGGTCCTCTCAGATCCATACACCACACTGTTCAGGAGAGC +
Preference number: 5 (lower is better)
Translates to: GPLYRAYLGLLGQHG*RGPLRSIHHTVQES
Trigger: GCTCTCCTGAACAGTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GTGCCAGGCCAAAGTCCTGGTGCTGTTGCGAAGGCAGTTGATGCATaGGGTAGTAGTTCTCAAATAGCTGCATCTGGGGCAGGGCTGCCG +
Preference number: 5 (lower is better)
Translates to: VPGQSPGAVAKAVDA*GSSSQIAASGAGLP
Trigger: CGGCAGCCCTGCCCCAGATGCAGCTATTTGAGAACTACTACCCCATGCATCAACTGCCTTCGCAACAGCACCAGGACTTTGGCCTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp CGGCTAAGGCAGGCTCGGAAAACTCCACGCCACACCTGGAAGTTGTaGCCAACACGCTTTTCCGCTTCTCCTCAGAGCCATTGGCATCCT +
Preference number: 5 (lower is better)
Translates to: RLRQARKTPRHTWKL*PTRFSASPQSHWHP
Trigger: AGGATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp CTCTCTTGGCGGCTAAGGCAGGCTCGGAAAACTCCACGCCACACCTaGAAGTTGTGGCCAACACGCTTTTCCGCTTCTCCTCAGAGCCAT +
Preference number: 5 (lower is better)
Translates to: LSWRLRQARKTPRHT*KLWPTRFSASPQSH
Trigger: ATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCAAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp TCAAAAGCTGCCAGCGCTCGGTCTCTCATCATGGGGATTTCTGCCTaGAACCGGGTCCCGACGTTGATTCGTGGTTCGATGCTCACAGGG +
Preference number: 5 (lower is better)
Translates to: SKAASARSLIMGISA*NRVPTLIRGSMLTG
Trigger: CCCTGTGAGCATCGAACCACGAATCAACGTCGGGACCCGGTTCCAGGCAGAAATCCCCATGATGAGAGACCGAGCGCTGGCAGCTTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTTTCAGGAGAGCCAGGTaGTTAGGAGGAGACAGCTCC +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLFRRAR*LGGDSS
Trigger: GGAGCTGTCTCCTCCTAACAACCTGGCTCTCCTGAA...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAGCTGGCACCAAAGAGCAGGCCAGGCCTCTCTAGGACCTGCTTGAGGCTCCTTTGGGAGGAGGCACCCTaGGGAACTTCTGAGAAGTCT +
Preference number: 5 (lower is better)
Translates to: KLAPKSRPGLSRTCLRLLWEEAP*GTSEKS
Trigger: AGACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCA...AAGGAGCCTCAAGCAGGTCCTAGAGAGGCCTGGCCTGCTCTTTGGTGCCAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp CCTCTTGGCCTGACTTCTCGTCACCGATATCCAGGTCGCCGAAGGTaGGCGTCCCGTTGCGGCCGATTTTCACCTGTTTCTTGTAGGTGT +
Preference number: 5 (lower is better)
Translates to: PLGLTSRHRYPGRRR*ASRCGRFSPVSCRC
Trigger: ACACCTACAAGAAACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTTCGGCGACCTGGATATCGGTGACGAGAAGTCAGGCCAAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp AGCTGGGCCACTTTACCGAGCTTACTTGGGCCTGCTGGGACAACATaGCTGCCGTGGTCCTCTCAGATCCATACACCACACTGTTCAGGA +
Preference number: 5 (lower is better)
Translates to: SWATLPSLLGPAGTT*LPWSSQIHTPHCSG
Trigger: TCCTGAACAGTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp GTGGCCAAATGCCAGCTGGAAGGGTTGCAAGGGCAGTGTCTGGTTTaGGGGTTTCTTGGCTGCATGGAAAGAGTTCAAGGGTGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: VAKCQLEGLQGQCLV*GFLGCMERVQGCLG
Trigger: CCCCAAGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGAGGGCAGTGTCTGGTTaGGGGGTTTCTTGGCTGCAT +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLRAVSG*GVSWLH
Trigger: ATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCT...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTCCTGCAGGAGAGCCTaGCGCAGTTCTGGGTTCATA +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLSCRRA*RSSGFI
Trigger: TATGAACCCAGAACTGCGCAAGGCTCTCCTGCAGGA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGGCTCCATCGAGGGAGTaGGAAGGCAGAATTCCCTCC +
Preference number: 5 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLAPSRE*EGRIPS
Trigger: GGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGC...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTTCTCCTCAGAGCCATaGGCATCCTGCATAGAGGCC +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLFSSEP*ASCIEA
Trigger: GGCCTCTATGCAGGATGCCAATGGCTCTGAGGAGAA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGCCCCAGGGAAAATGCTaGAACAGGCAGCTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLPQGKC*NRQLSA
Trigger: TGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGG...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGGACAGCAGTGAGGGCAAGAGACCTCAGAGATGGCCCAGAACACAGGCACGGTATGGCAATGCCCTTGTaGAACAGCTTCCTCTCAGCC +
Preference number: 5 (lower is better)
Translates to: RTAVRARDLRDGPEHRHGMAMPL*NSFLSA
Trigger: GGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCAT...ACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCTCTTGCCCTCACTGCTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGCACTGGGCCACAGTCTaGGTCTGGATCAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLHWATV*VWISFC
Trigger: GCAGAAGCTGATCCAGACCAAGACTGTGGCCCAGTG...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACCTCAGAGATGGCCCAGAACACAGGCACGGTCAGTGTCATGGCCTTCTCTGTGGGAGGAGGCACCCTaGGGAACTTCTGAGAAGTCT +
Preference number: 5 (lower is better)
Translates to: RPQRWPRTQARSVSWPSLWEEAP*GTSEKS
Trigger: AGACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCA...CAGAGAAGGCCATGACACTGACCGTGCCTGTGTTCTGGGCCATCTCTGAGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS CCA 90 bp ACTTTACCGAGCTTACTTGGGCCTGCTGGGACAACATGGCTGCCGTaGTCCTCTCAGATCCATACACCACACTGTTCAGGAGAGCCAGGT +
Preference number: 5 (lower is better)
Translates to: TLPSLLGPAGTTWLP*SSQIHTPHCSGEPG
Trigger: ACCTGGCTCTCCTGAACAGTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp AAAAGGCAGGACAGAGACCTGCCTTTGACCTCACCCACATCTGCTGGCTTCCTGAGGGCAGTGTCTGGTTaGGGGGTTTCTTGGCTGCAT +
Preference number: 5 (lower is better)
Translates to: KRQDRDLPLTSPTSAGFLRAVSG*GVSWLH
Trigger: ATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCT...CAGGAAGCCAGCAGATGTGGGTGAGGTCAAAGGCAGGTCTCTGTCCTGCCTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp TCACTTGGGGACTCTCTTCTGGGAGGAGGCACCCTTGGGAACTTCTaGGAAGTCTTAACGTCCACCTCAACCTCCTCTTGGCCTGACTTC +
Preference number: 5 (lower is better)
Translates to: SLGDSLLGGGTLGNF*EVLTSTSTSSWPDF
Trigger: GAAGTCAGGCCAAGAGGAGGTTGAGGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 90 bp AGGCAGCTGTCAGCAGGTCATCCACTTGTCTCTGCTTCTCCCAGCTaGTCTCAAGATGTTCCCATGGCTGCCACACCAAGTCAGCCTTAT +
Preference number: 5 (lower is better)
Translates to: RQLSAGHPLVSASPS*SQDVPMAATPSQPY
Trigger: ATAAGGCTGACTTGGTGTGGCAGCCATGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 90 bp CAGCCTCTCTTCACTTGGGGACTCTCTTCTGGGAGGAGGCACCCTTaGGAACTTCTGAGAAGTCTTAACGTCCACCTCAACCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: QPLFTWGLSSGRRHP*ELLRSLNVHLNLLL
Trigger: CAAGAGGAGGTTGAGGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGGTGGTGGCTGTTCCTaGGCGGCTGGCTCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRGGGCS*AAGSWS
Trigger: GGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAAGAGTTCAAGGGTGCTaGGGGCCTCCCCACCTCCAG +
Preference number: 5 (lower is better)
Translates to: NPISISNSQRAVGYFRSLRVQGC*GPPHLQ
Trigger: CTGGAGGTGGGGAGGCCCCAAGCACCCTTGAACTCT...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACATGGCAATGCCCTTGTaGAACAGCTTCCTCTCAGCC +
Preference number: 5 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHMAMPL*NSFLSA
Trigger: GGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCAT...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AGACGGGATTGTTGGAGCAACTCCGGCCTGAGCATGACAGCACAAGGACAACACTGCGGCCTTCTTCTCTaGCTCTGCGTGACTCTTCAT +
Preference number: 5 (lower is better)
Translates to: RRDCWSNSGLSMTAQGQHCGLLL*LCVTLH
Trigger: ATGAAGAGTCACGCAGAGCAAGAGAAGAAGGCCGCA...GTGTTGTCCTTGTGCTGTCATGCTCAGGCCGGAGTTGCTCCAACAATCCCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAGGGCTCCTGCCCAGGTaGGGTGCCAGCTCCATCGAG +
Preference number: 5 (lower is better)
Translates to: KTRILASCQLPRAFESTEGLLPR*GASSIE
Trigger: CTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCC...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTAACGATGACTGACGGCTaGTGCTCGGTGGGGTACTGC +
Preference number: 5 (lower is better)
Translates to: NPISISNSQRAVGYFRSLTMTDG*CSVGYC
Trigger: GCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGT...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS GCA 90 bp CTGCGGCCTTCTTCTCTTGCTCTGCGTGACTCTTCATGTGAGCACTaGGGCTCTTCACCTTGTAAAACACCCTGCCGCACTTTTTACAAG +
Preference number: 5 (lower is better)
Translates to: LRPSSLALRDSSCEH*GSSPCKTPCRTFYK
Trigger: CTTGTAAAAAGTGCGGCAGGGTGTTTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAAGAGAAGAAGGCCGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGGGCAGAATTCCCTCCTaGGAGAGACGGCGGGAGCGA +
Preference number: 5 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRGRIPS*ERRRER
Trigger: TCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCC...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTGGCAGAATTCCCTCCTaGGAGAGACGGCGGGAGCGA +
Preference number: 5 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVGRIPS*ERRRER
Trigger: TCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCC...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTATCCTGCAGGAGAGCCTaGCGCAGTTCTGGGTTCATA +
Preference number: 5 (lower is better)
Translates to: NPISISNSQRAVGYFRSLSCRRA*RSSGFI
Trigger: TATGAACCCAGAACTGCGCAAGGCTCTCCTGCAGGA...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCCCTGCGTCTCCGTTTaGTGCTCTGGATCACCCCAC +
Preference number: 5 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVPCVSV*CSGSPH
Trigger: GTGGGGTGATCCAGAGCACAAAACGGAGACGCAGGG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AACCCCATCTCTATTTCCAATTCCCAACGGGCTGTAGGCTATTTCCGCTCCTTACCCCAGGGAAAATGCTaGAACAGGCAGCTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: NPISISNSQRAVGYFRSLPQGKC*NRQLSA
Trigger: TGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGG...TAAGGAGCGGAAATAGCCTACAGCCCGTTGGGAATTGGAAATAGAGATGGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCACTGGGCCACAGTCTaGGTCTGGATCAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVHWATV*VWISFC
Trigger: GCAGAAGCTGATCCAGACCAAGACTGTGGCCCAGTG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS TCA 90 bp TCTGCACCAGGAAGAAATCTTTCTTATAGATGGCAATGCCCTTGTTaGACAGCTTCCTCTCAGCCGTCTTCCACTGGTCAGAGCCTGTGT +
Preference number: 5 (lower is better)
Translates to: SAPGRNLSYRWQCPC*TASSQPSSTGQSLC
Trigger: ACACAGGCTCTGACCAGTGGAAGACGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS-3UTR CAA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTTTCAGGAGAGCCAGGTaGTTAGGAGGAGACAGCTCC +
Preference number: 5 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVFRRAR*LGGDSS
Trigger: GGAGCTGTCTCCTCCTAACAACCTGGCTCTCCTGAA...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGCAGCAGGTCATCCACTaGTCTCTGCTTCTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRQQVIH*SLLLPA
Trigger: AGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTG...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp GTCAAACAGGGAGCTCTGAATAGAAAGAACAACAAAAGCCAAGCCCAGTGTGTTCAGCAGGTCATCCACTaGTCTCTGCTTCTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: VKQGALNRKNNKSQAQCVQQVIH*SLLLPA
Trigger: AGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTG...AACACACTGGGCTTGGCTTTTGTTGTTCTTTCTATTCAGAGCTCCCTGTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAAAAGGTGAGCGTCCCGTaGCGGCCGATTTTCACCTGT +
Preference number: 5 (lower is better)
Translates to: KTRILASCQLPRAFESTEKVSVP*RPIFTC
Trigger: ACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTT...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp AAAACTAGAATTCTGGCCTCTTGCCAACTCCCTCGAGCATTTGAAAGTACAGAATTCTCCTCAGAGCCATaGGCATCCTGCATAGAGGCC +
Preference number: 5 (lower is better)
Translates to: KTRILASCQLPRAFESTEFSSEP*ASCIEA
Trigger: GGCCTCTATGCAGGATGCCAATGGCTCTGAGGAGAA...TTCTGTACTTTCAAATGCTCGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS-3UTR CAA 90 bp CTATTGCACTCTTCCTCCTCTGTCTTTAACATCTGGCACATGAGAAGAAAGAGGTGCGGCCTTCTTCTCTaGCTCTGCGTGACTCTTCAT +
Preference number: 5 (lower is better)
Translates to: LLHSSSSVFNIWHMRRKRCGLLL*LCVTLH
Trigger: ATGAAGAGTCACGCAGAGCAAGAGAAGAAGGCCGCA...CCTCTTTCTTCTCATGTGCCAGATGTTAAAGACAGAGGAGGAAGAGTGCAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS CCA 72 bp GGCCATGCTGCGGTGAGCCAGGTGGGTCTGTCCCAGTaGCCCACCTGGTGCCAGGCCAAAGTCCTGGTGCTG +
Preference number: 6 (lower is better)
Translates to: GHAAVSQVGLSQ*PTWCQAKVLVL
Trigger: CAGCACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGACAGACCCACCTGGCTCACCGCAGCATGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp AGGGTGCCTGGCGGTGGCTGCGGCAGAGACCAGTGGTaGAGGAACAGATTGCTCGCGGGCTCCTGCCCAGGT +
Preference number: 6 (lower is better)
Translates to: RVPGGGCGRDQW*RNRLLAGSCPG
Trigger: ACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GGCTGGGTGGTGGAGGCCACCCCTGTGGGACCTTCGTaGGCCCCGTACTGTTCCTCCTTAGCTCTGAGGGAC +
Preference number: 6 (lower is better)
Translates to: GWVVEATPVGPS*APYCSSLALRD
Trigger: GTCCCTCAGAGCTAAGGAGGAACAGTACGGGGCCCACGAAGGTCCCACAGGGGTGGCCTCCACCACCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp TCCCAGGGCTTCAGAATGGGGCTGCCCCAGGGTGCCTaGCGGTGGCTGCGGCAGAGACCAGTGGTGAAGGAA +
Preference number: 6 (lower is better)
Translates to: SQGFRMGLPQGA*RWLRQRPVVKE
Trigger: TTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCCCTGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp TCCCTCAGTTCTAACGGGAATCCCAGGGCTTCAGAATaGGGCTGCCCCAGGGTGCCTGGCGGTGGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: SLSSNGNPRASE*GCPRVPGGGCG
Trigger: GCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCCCTGGGATTCCCGTTAGAACTGAGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp GGGAACTCGGGTGGACCGCCTGCGGGTCACGATGACTaGCGGCTTGTGCTCGGTGGGGTACTGCTCAAGACC +
Preference number: 6 (lower is better)
Translates to: GNSGGPPAGHDD*RLVLGGVLLKT
Trigger: GGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp TCCCGGGAACTCGGGTGGACCGCCTGCGGGTCACGATaGCTGACGGCTTGTGCTCGGTGGGGTACTGCTCAA +
Preference number: 6 (lower is better)
Translates to: SRELGWTACGSR*LTACARWGTAQ
Trigger: TTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp TTCTCCCCTTCGCCGCTCTCTTCTCTCAGCGCCTGCTaGTGTGCGGCGGCCGCTGCAGCCTCCTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FSPSPLSSLSAC*CAAAAAASFSF
Trigger: GAAGGAGAAGGAGGCTGCAGCGGCCGCCGCACATCAGCAGGCGCTGAGAGAAGAGAGCGGCGAAGGGGAGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
CDS GCA 72 bp GTGAGCCAGGTGGGTCTGTCCCAGTGGCCCACCTGGTaGCAGGCCAAAGTCCTGGTGCTGTTGCGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: VSQVGLSQWPTW*QAKVLVLLRRQ
Trigger: CTGCCTTCGCAACAGCACCAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGACAGACCCACCTGGCTCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp GTGGCTGCGGCAGAGACCAGTGGTGAAGGAACAGATTaGTCGCGGGCTCCTGCCCAGGTTGGGTGCCAGCTC +
Preference number: 6 (lower is better)
Translates to: VAAAETSGEGTD*SRAPAQVGCQL
Trigger: GAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp CGGGTGGACCGCCTGCGGGTCACGATGACTGACGGCTaGTGCTCGGTGGGGTACTGCTCAAGACCAGTCCCA +
Preference number: 6 (lower is better)
Translates to: RVDRLRVTMTDG*CSVGYCSRPVP
Trigger: TGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp CCGGGAACTCGGGTGGACCGCCTGCGGGTCACGATGACTGACGGCTaGTGCTCGGTGGGGTACTGCTCAAGACCAGTCCCATCCTCGTCA +
Preference number: 6 (lower is better)
Translates to: PGTRVDRLRVTMTDG*CSVGYCSRPVPSSS
Trigger: TGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp TCATCTGTCCACAGTCCCCGAGGCCCCCTGCTCTCATaGCCTCCTCATTACCCATGGCGGGAGGCTCCCGCT +
Preference number: 6 (lower is better)
Translates to: SSVHSPRGPLLS*PPHYPWREAPA
Trigger: AGCGGGAGCCTCCCGCCATGGGTAATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGACTGTGGACAGATGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp GTGGACCGCCTGCGGGTCACGATGACTGACGGCTTGTaGTCGGTGGGGTACTGCTCAAGACCAGTCCCATCC +
Preference number: 6 (lower is better)
Translates to: VDRLRVTMTDGL*SVGYCSRPVPS
Trigger: GGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CTTAGCTCTGAGGGACTGTGGTGGACTCTGCAGTGGTaGTGGCTGTTCCTTGGCGGCTGGCTCCTGGTCCCC +
Preference number: 6 (lower is better)
Translates to: LSSEGLWWTLQW*WLFLGGWLLVP
Trigger: GGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CCTGCCCAGGTTGGGTGCCAGCTCCATCGAGGGAGTTaGAAGGCAGAATTCCCTCCTTGGAGAGACGGCGGG +
Preference number: 6 (lower is better)
Translates to: PAQVGCQLHRGS*KAEFPPWRDGG
Trigger: CCCGCCGTCTCTCCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GGCTTCAGAATGGGGCTGCCCCAGGGTGCCTGGCGGTaGCTGCGGCAGAGACCAGTGGTGAAGGAACAGATT +
Preference number: 6 (lower is better)
Translates to: GFRMGLPQGAWR*LRQRPVVKEQI
Trigger: AATCTGTTCCTTCACCACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp CCGCCCTGGAGCCATCACAGAGCTGGGCCACTTTACCGAGCTTACTaGGGCCTGCTGGGACAACATGGCTGCCGTGGTCCTCTCAGATCC +
Preference number: 6 (lower is better)
Translates to: PPWSHHRAGPLYRAY*GLLGQHGCRGPLRS
Trigger: GGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCTCCAGGGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp TCCCTCGGCTTCTCTGAGGTCTGGATACCTGCAGACCCCGGGGCGTaGGGCTCATGGCTCCGGAGAATGAGAACGTCATTGGCCGCCTCA +
Preference number: 6 (lower is better)
Translates to: SLGFSEVWIPADPGA*GSWLRRMRTSLAAS
Trigger: TGAGGCGGCCAATGACGTTCTCATTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp CAGACCCCGGGGCGTTGGGCTCATGGCTCCGGAGAATaGGAACGTCATTGGCCGCCTCATTGGCCTGTAGTG +
Preference number: 6 (lower is better)
Translates to: QTPGRWAHGSGE*ERHWPPHWPVV
Trigger: CACTACAGGCCAATGAGGCGGCCAATGACGTTCTCATTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CTCCTTAGCTCTGAGGGACTGTGGTGGACTCTGCAGTaGTGGTGGCTGTTCCTTGGCGGCTGGCTCCTGGTC +
Preference number: 6 (lower is better)
Translates to: LLSSEGLWWTLQ*WWLFLGGWLLV
Trigger: GACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CTCCGGGTGGTTATAGTAGGGAGGTACCCCCACACCTaGATGAGGGCTCCCTTTGGGTCCACCGTAGAGGGG +
Preference number: 6 (lower is better)
Translates to: LRVVIVGRYPHT*MRAPFGSTVEG
Trigger: CCCCTCTACGGTGGACCCAAAGGGAGCCCTCATCCAGGTGTGGGGGTACCTCCCTACTATAACCACCCGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GCCTCCCCACCTCCAGCTGCACCTTCTGTGGCACCATaGGCTGCACTGCGTTTCCATAGTGATCCAGCTGGG +
Preference number: 6 (lower is better)
Translates to: ASPPPAAPSVAP*AALRFHSDPAG
Trigger: CCCAGCTGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCCACAGAAGGTGCAGCTGGAGGTGGGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp GACTGTGGTGGACTCTGCAGTGGTGGTGGCTGTTCCTaGGCGGCTGGCTCCTGGTCCCCAAAAGGACAACGC +
Preference number: 6 (lower is better)
Translates to: DCGGLCSGGGCS*AAGSWSPKGQR
Trigger: GCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp GCTCCATCGAGGGAGTTGGAAGGCAGAATTCCCTCCTaGGAGAGACGGCGGGAGCGACGTGGGAAGGCCATC +
Preference number: 6 (lower is better)
Translates to: APSRELEGRIPS*ERRRERRGKAI
Trigger: GATGGCCTTCCCACGTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp GTGAAGGAACAGATTGCTCGCGGGCTCCTGCCCAGGTaGGGTGCCAGCTCCATCGAGGGAGTTGGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: VKEQIARGLLPR*GASSIEGVGRQ
Trigger: CTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp TGGCGGCTGGCTCCTGGTCCCCAAAAGGACAACGCTTaGGTTTACTCTGAGCCTTGGACTGGGCCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: WRLAPGPQKDNA*VYSEPWTGPGG
Trigger: ACCTCCAGGCCCAGTCCAAGGCTCAGAGTAAACGCAAGCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp CTCCAGCTGCACCTTCTGTGGCACCATGGGCTGCACTaGGTTTCCATAGTGATCCAGCTGGGGACCTCCAGG +
Preference number: 6 (lower is better)
Translates to: LQLHLLWHHGLH*VSIVIQLGTSR
Trigger: CCTGGAGGTCCCCAGCTGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCCACAGAAGGTGCAGCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp GGAACAGATTGCTCGCGGGCTCCTGCCCAGGTTGGGTaGCAGCTCCATCGAGGGAGTTGGAAGGCAGAATTC +
Preference number: 6 (lower is better)
Translates to: GTDCSRAPAQVG*QLHRGSWKAEF
Trigger: GAATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp GTCACGATGACTGACGGCTTGTGCTCGGTGGGGTACTaGTCAAGACCAGTCCCATCCTCGTCAGCACCTCCG +
Preference number: 6 (lower is better)
Translates to: VTMTDGLCSVGY*SRPVPSSSAPP
Trigger: CGGAGGTGCTGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp ACTGTGGTGGACTCTGCAGTGGTGGTGGCTGTTCCTTaGCGGCTGGCTCCTGGTCCCCAAAAGGACAACGCT +
Preference number: 6 (lower is better)
Translates to: TVVDSAVVVAVP*RLAPGPQKDNA
Trigger: AGCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CCCGTACTGTTCCTCCTTAGCTCTGAGGGACTGTGGTaGACTCTGCAGTGGTGGTGGCTGTTCCTTGGCGGC +
Preference number: 6 (lower is better)
Translates to: PVLFLLSSEGLW*TLQWWWLFLGG
Trigger: GCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAGGAGGAACAGTACGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GCCATCACAGAGCTGGGCCACTTTACCGAGCTTACTTaGGCCTGCTGGGACAACATGGCTGCCGTGGTCCTC +
Preference number: 6 (lower is better)
Translates to: AITELGHFTELT*ACWDNMAAVVL
Trigger: GAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CTCCATCGAGGGAGTTGGAAGGCAGAATTCCCTCCTTaGAGAGACGGCGGGAGCGACGTGGGAAGGCCATCT +
Preference number: 6 (lower is better)
Translates to: LHRGSWKAEFPP*RDGGSDVGRPS
Trigger: AGATGGCCTTCCCACGTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTGCCTTCCAACTCCCTCGATGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GGGACTCATGCAGATAGTGCAGGGCCAGCTCCTGGTTaGTGCCGGCCCCAGGGAAAATGCTTGAACAGGCAG +
Preference number: 6 (lower is better)
Translates to: GTHADSAGPAPG*CRPQGKCLNRQ
Trigger: CTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACTATCTGCATGAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp ATGAGGGGTACCATCCCACTCTCCTCCCGAGCTCTCTaGGCGGCTAAGGCAGGCTCGGAAAACTCCACGCCA +
Preference number: 6 (lower is better)
Translates to: MRGTIPLSSRAL*AAKAGSENSTP
Trigger: TGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTACCCCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp GCTCTGAGGGACTGTGGTGGACTCTGCAGTGGTGGTGGCTGTTCCTaGGCGGCTGGCTCCTGGTCCCCAAAAGGACAACGCTTGCGTTTA +
Preference number: 6 (lower is better)
Translates to: ALRDCGGLCSGGGCS*AAGSWSPKGQRLRL
Trigger: TAAACGCAAGCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp CTGCCGGAAGACCTGACGGTTCACCTGGTGGCCAAATaGCAGCTGGAAGGGTTGCAAGGGCAGTGTCTGGTT +
Preference number: 6 (lower is better)
Translates to: LPEDLTVHLVAK*QLEGLQGQCLV
Trigger: AACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGTCAGGTCTTCCGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp ACTTCGTATCATCTGTCCACAGTCCCCGAGGCCCCCTaGTCTCATGACCTCCTCATTACCCATGGCGGGAGG +
Preference number: 6 (lower is better)
Translates to: TSYHLSTVPEAP*SHDLLITHGGR
Trigger: CCTCCCGCCATGGGTAATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGACTGTGGACAGATGATACGAAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp AGCTGCCAGCGCTCGGTCTCTCATCATGGGGATTTCTaGCTGGAACCGGGTCCCGACGTTGATTCGTGGTTC +
Preference number: 6 (lower is better)
Translates to: SCQRSVSHHGDF*LEPGPDVDSWF
Trigger: GAACCACGAATCAACGTCGGGACCCGGTTCCAGGCAGAAATCCCCATGATGAGAGACCGAGCGCTGGCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp ACTCATGCAGATAGTGCAGGGCCAGCTCCTGGTTGGTaGCGGCCCCAGGGAAAATGCTTGAACAGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: THADSAGPAPGW*RPQGKCLNRQL
Trigger: CAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACTATCTGCATGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp TGGACTCTGCAGTGGTGGTGGCTGTTCCTTGGCGGCTaGCTCCTGGTCCCCAAAAGGACAACGCTTGCGTTT +
Preference number: 6 (lower is better)
Translates to: WTLQWWWLFLGG*LLVPKRTTLAF
Trigger: AAACGCAAGCGTTGTCCTTTTGGGGACCAGGAGCCAGCCGCCAAGGAACAGCCACCACCACTGCAGAGTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GCTATTAGAGCGGAGCAGGGTTCGATGGGCACTCTTTaGCGTGATAGGAGGAGGGGCCGGGATGTTGCTGGT +
Preference number: 6 (lower is better)
Translates to: AIRAEQGSMGTL*RDRRRGRDVAG
Trigger: ACCAGCAACATCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGAACCCTGCTCCGCTCTAATAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GTGACTTCAGAGCTATTAGAGCGGAGCAGGGTTCGATaGGCACTCTTTGGCGTGATAGGAGGAGGGGCCGGG +
Preference number: 6 (lower is better)
Translates to: VTSELLERSRVR*ALFGVIGGGAG
Trigger: CCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGAACCCTGCTCCGCTCTAATAGCTCTGAAGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GCCAGCGCTCGGTCTCTCATCATGGGGATTTCTGCCTaGAACCGGGTCCCGACGTTGATTCGTGGTTCGATG +
Preference number: 6 (lower is better)
Translates to: ASARSLIMGISA*NRVPTLIRGSM
Trigger: CATCGAACCACGAATCAACGTCGGGACCCGGTTCCAGGCAGAAATCCCCATGATGAGAGACCGAGCGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp AGCCATCACAGAGCTGGGCCACTTTACCGAGCTTACTaGGGCCTGCTGGGACAACATGGCTGCCGTGGTCCT +
Preference number: 6 (lower is better)
Translates to: SHHRAGPLYRAY*GLLGQHGCRGP
Trigger: AGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp CATCCTCGTCAGCACCTCCGACTTGGGCCACCTCAGTaGGACCCACAGTCCTCACGGGAACAGACACAGGAA +
Preference number: 6 (lower is better)
Translates to: HPRQHLRLGPPQ*DPQSSREQTQE
Trigger: TTCCTGTGTCTGTTCCCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAGTCGGAGGTGCTGACGAGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp CCAGCTCCTGGTTGGTGCCGGCCCCAGGGAAAATGCTaGAACAGGCAGCTGTCAGCAGGTCATCCACTTGTC +
Preference number: 6 (lower is better)
Translates to: PAPGWCRPQGKC*NRQLSAGHPLV
Trigger: GACAAGTGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp ACAGGAATGATGAGGGGTACCATCCCACTCTCCTCCCGAGCTCTCTaGGCGGCTAAGGCAGGCTCGGAAAACTCCACGCCACACCTGGAA +
Preference number: 6 (lower is better)
Translates to: TGMMRGTIPLSSRAL*AAKAGSENSTPHLE
Trigger: TTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTACCCCTCATCATTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp AGTGCAGGGCCAGCTCCTGGTTGGTGCCGGCCCCAGGGAAAATGCTaGAACAGGCAGCTGTCAGCAGGTCATCCACTTGTCTCTGCTTCT +
Preference number: 6 (lower is better)
Translates to: SAGPAPGWCRPQGKC*NRQLSAGHPLVSAS
Trigger: AGAAGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp TGGCGGCTAAGGCAGGCTCGGAAAACTCCACGCCACACCTGGAAGTaGTGGCCAACACGCTTTTCCGCTTCTCCTCAGAGCCATTGGCAT +
Preference number: 6 (lower is better)
Translates to: WRLRQARKTPRHTWK*WPTRFSASPQSHWH
Trigger: ATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp CAGCTCCTGGTTGGTGCCGGCCCCAGGGAAAATGCTTaGACAGGCAGCTGTCAGCAGGTCATCCACTTGTCT +
Preference number: 6 (lower is better)
Translates to: QLLVGAGPRENA*TGSCQQVIHLS
Trigger: AGACAAGTGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp GCCTCCTGGGACACCCTGCGTCTCCGTTTTGTGCTCTaGATCACCCCACTTCGTATCATCTGTCCACAGTCC +
Preference number: 6 (lower is better)
Translates to: ASWDTLRLRFVL*ITPLRIICPQS
Trigger: GGACTGTGGACAGATGATACGAAGTGGGGTGATCCAGAGCACAAAACGGAGACGCAGGGTGTCCCAGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp ACTGCCTTCTGGGCCAGGGTCAGCAAATTAGCCTCCTaGGACACCCTGCGTCTCCGTTTTGTGCTCTGGATC +
Preference number: 6 (lower is better)
Translates to: TAFWARVSKLAS*DTLRLRFVLWI
Trigger: GATCCAGAGCACAAAACGGAGACGCAGGGTGTCCCAGGAGGCTAATTTGCTGACCCTGGCCCAGAAGGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CGGCTAAGGCAGGCTCGGAAAACTCCACGCCACACCTaGAAGTTGTGGCCAACACGCTTTTCCGCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: RLRQARKTPRHT*KLWPTRFSASP
Trigger: AGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp TGGCCCACCTGGTGCCAGGCCAAAGTCCTGGTGCTGTaGCGAAGGCAGTTGATGCATGGGGTAGTAGTTCTC +
Preference number: 6 (lower is better)
Translates to: WPTWCQAKVLVL*RRQLMHGVVVL
Trigger: GAGAACTACTACCCCATGCATCAACTGCCTTCGCAACAGCACCAGGACTTTGGCCTGGCACCAGGTGGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp AGCACGGGCTGTGAAGCAGGGTCCTGCAGGAGAGCCTaGCGCAGTTCTGGGTTCATATCTGGGTTGTGGGAA +
Preference number: 6 (lower is better)
Translates to: STGCEAGSCRRA*RSSGFISGLWE
Trigger: TTCCCACAACCCAGATATGAACCCAGAACTGCGCAAGGCTCTCCTGCAGGACCCTGCTTCACAGCCCGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp AGGCAGGCTCGGAAAACTCCACGCCACACCTGGAAGTaGTGGCCAACACGCTTTTCCGCTTCTCCTCAGAGC +
Preference number: 6 (lower is better)
Translates to: RQARKTPRHTWK*WPTRFSASPQS
Trigger: GCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp TTCTCTGAGGTCTGGATACCTGCAGACCCCGGGGCGTaGGGCTCATGGCTCCGGAGAATGAGAACGTCATTG +
Preference number: 6 (lower is better)
Translates to: FSEVWIPADPGA*GSWLRRMRTSL
Trigger: CAATGACGTTCTCATTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGCAGGTATCCAGACCTCAGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 90 bp GGTGGCCAAATGCCAGCTGGAAGGGTTGCAAGGGCAGTGTCTGGTTaGGGGGTTTCTTGGCTGCATGGAAAGAGTTCAAGGGTGCTTGGG +
Preference number: 6 (lower is better)
Translates to: GGQMPAGRVARAVSG*GVSWLHGKSSRVLG
Trigger: CCCAAGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp CTGACTTCTCGTCACCGATATCCAGGTCGCCGAAGGTaGGCGTCCCGTTGCGGCCGATTTTCACCTGTTTCT +
Preference number: 6 (lower is better)
Translates to: LTSRHRYPGRRR*ASRCGRFSPVS
Trigger: AGAAACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTTCGGCGACCTGGATATCGGTGACGAGAAGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp AGGGTTGCAAGGGCAGTGTCTGGTTTGGGGGTTTCTTaGCTGCATGGAAAGAGTTCAAGGGTGCTTGGGGCC +
Preference number: 6 (lower is better)
Translates to: RVARAVSGLGVS*LHGKSSRVLGA
Trigger: GGCCCCAAGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCAACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CAGGCTCGGAAAACTCCACGCCACACCTGGAAGTTGTaGCCAACACGCTTTTCCGCTTCTCCTCAGAGCCAT +
Preference number: 6 (lower is better)
Translates to: QARKTPRHTWKL*PTRFSASPQSH
Trigger: ATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp AGATGTTCCCATGGCTGCCACACCAAGTCAGCCTTATaGGGGTCAAAAGCTGCCAGCGCTCGGTCTCTCATC +
Preference number: 6 (lower is better)
Translates to: RCSHGCHTKSAL*GSKAASARSLI
Trigger: GATGAGAGACCGAGCGCTGGCAGCTTTTGACCCCCATAAGGCTGACTTGGTGTGGCAGCCATGGGAACATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS TCA 72 bp TGGCGTGATAGGAGGAGGGGCCGGGATGTTGCTGGTTaGTATGATGGCATTGAAGTAGAGGCCAGAGCCTTC +
Preference number: 6 (lower is better)
Translates to: WRDRRRGRDVAG*YDGIEVEARAF
Trigger: GAAGGCTCTGGCCTCTACTTCAATGCCATCATATCAACCAGCAACATCCCGGCCCCTCCTCCTATCACGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp TACCGAGCTTACTTGGGCCTGCTGGGACAACATGGCTaGCGTGGTCCTCTCAGATCCATACACCACACTGTT +
Preference number: 6 (lower is better)
Translates to: YRAYLGLLGQHG*RGPLRSIHHTV
Trigger: AACAGTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp GAACAGGCAGCTGTCAGCAGGTCATCCACTTGTCTCTaGTTCTCCCAGCTGCTCTCAAGATGTTCCCATGGC +
Preference number: 6 (lower is better)
Translates to: EQAAVSRSSTCL*FSQLLSRCSHG
Trigger: GCCATGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp ACTTTACCGAGCTTACTTGGGCCTGCTGGGACAACATaGCTGCCGTGGTCCTCTCAGATCCATACACCACAC +
Preference number: 6 (lower is better)
Translates to: TLPSLLGPAGTT*LPWSSQIHTPH
Trigger: GTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAGTAAGCTCGGTAAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp TGCTTCTCCCAGCTGCTCTCAAGATGTTCCCATGGCTaGCACACCAAGTCAGCCTTATGGGGGTCAAAAGCT +
Preference number: 6 (lower is better)
Translates to: CFSQLLSRCSHG*HTKSALWGSKA
Trigger: AGCTTTTGACCCCCATAAGGCTGACTTGGTGTGGCAGCCATGGGAACATCTTGAGAGCAGCTGGGAGAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp TCAGCAGGTCATCCACTTGTCTCTGCTTCTCCCAGCTaGTCTCAAGATGTTCCCATGGCTGCCACACCAAGT +
Preference number: 6 (lower is better)
Translates to: SAGHPLVSASPS*SQDVPMAATPS
Trigger: ACTTGGTGTGGCAGCCATGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CAA 72 bp ATGCCAGCTGGAAGGGTTGCAAGGGCAGTGTCTGGTTaGGGGGTTTCTTGGCTGCATGGAAAGAGTTCAAGG +
Preference number: 6 (lower is better)
Translates to: MPAGRVARAVSG*GVSWLHGKSSR
Trigger: CCTTGAACTCTTTCCATGCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS GCA 72 bp TCTTCTCTTGCTCTGCGTGACTCTTCATGTGAGCACTaGGGCTCTTCACCTTGTAAAACACCCTGCCGCACT +
Preference number: 6 (lower is better)
Translates to: SSLALRDSSCEH*GSSPCKTPCRT
Trigger: AGTGCGGCAGGGTGTTTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAAGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2
CDS CCA 72 bp CAAAGTCCTGGTGCTGTTGCGAAGGCAGTTGATGCATaGGGTAGTAGTTCTCAAATAGCTGCATCTGGGGCA +
Preference number: 6 (lower is better)
Translates to: QSPGAVAKAVDA*GSSSQIAASGA
Trigger: TGCCCCAGATGCAGCTATTTGAGAACTACTACCCCATGCATCAACTGCCTTCGCAACAGCACCAGGACTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046266.13
ENSMUST00000110294.2
ENSMUST00000220974.2