RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MID2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000266

Ensembl transcript IDs: ENSMUST00000112988.8, ENSMUST00000112990.8, ENSMUST00000112993.2, ENSMUST00000128809.2

Found 290 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATATTTCTGAAGCTGGCAGACCACACCATAAAAGGCAGTTTTGCCTaGCCTGATGGCAATAAATCTGGCCAACTTGTAATACACAGCCAA +
Preference number: 1 (lower is better)
Translates to: IFLKLADHTIKGSFA*PDGNKSGQLVIHSQ
Trigger: TTGGCTGTGTATTACAAGTTGGCCAGATTTATTGCCATCAGGTCAGGCAAAACTGCCTTTTATGGTGTGGTCTGCCAGCTTCAGAAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 90 bp GTGCCAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTaGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACAG +
Preference number: 1 (lower is better)
Translates to: VPRSRFGSWKKVLFL*HFQLISATEMVKSQ
Trigger: CTGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTGGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 90 bp CTGGCTTTAGCTAGAGTTACCCTCTGGTCCCTTGCCAGTGTTCTATaGAAGTCTTTTAAGTTTACTGAAGTAAATATCTGGAACTCACCA +
Preference number: 1 (lower is better)
Translates to: LALARVTLWSLASVL*KSFKFTEVNIWNSP
Trigger: TGGTGAGTTCCAGATATTTACTTCAGTAAACTTAAAAGACTTTCATAGAACACTGGCAAGGGACCAGAGGGTAACTCTAGCTAAAGCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 90 bp ATCACTAACAATACTTCTAAAATGGCTCTTTACATGATGGCATTCTaGAAACACTTCCATATTATTGCTGGGTGGGGAGGGTCTCAGTGT +
Preference number: 1 (lower is better)
Translates to: ITNNTSKMALYMMAF*KHFHIIAGWGGSQC
Trigger: ACACTGAGACCCTCCCCACCCAGCAATAATATGGAAGTGTTTTCAGAATGCCATCATGTAAAGAGCCATTTTAGAAGTATTGTTAGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 90 bp ACGGTACATATAATCTTTGAAGGCAGAGAACCTGACTTTGCTACCTaGCATGTAAATCTAAGTCTTTCTTTTGTATTGGCACAGGTCTTG +
Preference number: 1 (lower is better)
Translates to: TVHIIFEGREPDFAT*HVNLSLSFVLAQVL
Trigger: CAAGACCTGTGCCAATACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCCTTCAAAGATTATATGTACCGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 90 bp GTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTTACTaGAGTTGCTCATTTCCTAATGAGCTATACGGTACATATAATCTT +
Preference number: 1 (lower is better)
Translates to: VLSYHKPTTSTVEFY*SCSFPNELYGTYNL
Trigger: AAGATTATATGTACCGTATAGCTCATTAGGAAATGAGCAACTTCAGTAAAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR TCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCGCATGTGTTTGTACATaGGGCAAGAGGGAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFACVCT*GKREER
Trigger: TCTTTCCTCCCTCTTGCCTCATGTACAAACACATGC...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCAAGAGAGAGAAATGCTaGCTAGCCATGATGGTTTTA +
Preference number: 2 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFKREKC*LAMMVL
Trigger: TAAAACCATCATGGCTAGCCAGCATTTCTCTCTCTT...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR TCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTGAACCGGAGAGCCAGTaGCTTACATGCTCTCTTGAC +
Preference number: 2 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFEPESQ*LTCSLD
Trigger: GTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTC...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGAACCGGAGAGCCAGTaGCTTACATGCTCTCTTGAC +
Preference number: 2 (lower is better)
Translates to: GREPDFATWHVNLSLSFVEPESQ*LTCSLD
Trigger: GTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGCATGTGTTTGTACATaGGGCAAGAGGGAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: GREPDFATWHVNLSLSFVACVCT*GKREER
Trigger: TCTTTCCTCCCTCTTGCCTCATGTACAAACACATGC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGAGGAAAGAGAGAGAAATaGTGGCTAGCCATGATGGTT +
Preference number: 2 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGGKREK*WLAMMV
Trigger: AACCATCATGGCTAGCCAGCATTTCTCTCTCTTTCC...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTAGAATTCTTCCCTGGTaGCACAAACCCAGACTATTC +
Preference number: 2 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFRILPW*HKPRLF
Trigger: GAATAGTCTGGGTTTGTGCCACCAGGGAAGAATTCT...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 90 bp TGTAATCCACAGATGTTCATATTTCTGTTACTAGGAGAGACACTATaGGTCCAGAGCTCCCAGTACAAACAAGCCTGGGGTAAAGCATTT +
Preference number: 2 (lower is better)
Translates to: CNPQMFIFLLLGETL*VQSSQYKQAWGKAF
Trigger: AAATGCTTTACCCCAGGCTTGTTTGTACTGGGAGCTCTGGACCAATAGTGTCTCTCCTAGTAACAGAAATATGAACATCTGTGGATTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATGGAAAGAGAGAGAAATaGTGGCTAGCCATGATGGTT +
Preference number: 2 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNGKREK*WLAMMV
Trigger: AACCATCATGGCTAGCCAGCATTTCTCTCTCTTTCC...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 90 bp ACCAGAATCCAATTTCTATGTAGCATTAGCATCTCTTGTGCAATCTaGTCCCCAGATCTCTCCTCATCTAACCAAGAGCTCTTTTCACTT +
Preference number: 2 (lower is better)
Translates to: TRIQFLCSISISCAI*SPDLSSSNQELFSL
Trigger: AAGTGAAAAGAGCTCTTGGTTAGATGAGGAGAGATCTGGGGACAAGATTGCACAAGAGATGCTAATGCTACATAGAAATTGGATTCTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCTCTAGTTATTTCGAGTaGTTCCAATGGACTTTAGTT +
Preference number: 2 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGSSYFE*FQWTLV
Trigger: AACTAAAGTCCATTGGAAGCACTCGAAATAACTAGA...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCATACAATCCAGGGAATaGCTACTACTATCATTTAAC +
Preference number: 2 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGIQSRE*LLLSFN
Trigger: GTTAAATGATAGTAGTAGCCATTCCCTGGATTGTAT...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGACAATGGACTTTAGTTTaGATCTCATATATGGAGCAC +
Preference number: 2 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGQWTLV*ISYMEH
Trigger: GTGCTCCATATATGAGATGCAAACTAAAGTCCATTG...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATTTCCTGTGTCTTGATTaGATGTGTTTGTACATGAGG +
Preference number: 2 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNFLCLD*MCLYMR
Trigger: CCTCATGTACAAACACATGCAATCAAGACACAGGAA...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR GCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTTTTGACACCAAGGTCTaGATTCTAGTAATATGTGCA +
Preference number: 2 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFFDTKV*ILVICA
Trigger: TGCACATATTACTAGAATGCAGACCTTGGTGTCAAA...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR TCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAAGGTCACTAGTTAGCTaGGAAGATGGGATGAGGAAA +
Preference number: 2 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIRSLVS*EDGMRK
Trigger: TTTCCTCATCCCATCTTCTCAGCTAACTAGTGACCT...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR GCA 72 bp TTGCTGGGTGGGGAGGGTCTCAGTGTGCCAGGGGAGTaGCACAGGGAGCCACAAATGCCAATTCCAGAGGTC +
Preference number: 3 (lower is better)
Translates to: LLGGEGLSVPGE*HREPQMPIPEV
Trigger: GACCTCTGGAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCCCACCCAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CAA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCGAAGAGGAAACAGGTTaGAAGAAGTGCGTTCCTGAG +
Preference number: 3 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFEEETG*KKCVPE
Trigger: CTCAGGAACGCACTTCTTCAAACCTGTTTCCTCTTC...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp AGCCACAAATGCCAATTCCAGAGGTCACTAGTTAGCTaGGAAGATGGGATGAGGAAAGGTAGTCTAAGCTGC +
Preference number: 3 (lower is better)
Translates to: SHKCQFQRSLVS*EDGMRKGSLSC
Trigger: GCAGCTTAGACTACCTTTCCTCATCCCATCTTCTCAGCTAACTAGTGACCTCTGGAATTGGCATTTGTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp TTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATaGGGCAAGAGGGAGGAAAGAACGGCTGTAAGGGAA +
Preference number: 3 (lower is better)
Translates to: FTSCVLIACVCT*GKREERTAVRE
Trigger: TTCCCTTACAGCCGTTCTTTCCTCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp AAGCTGGCAGACCACACCATAAAAGGCAGTTTTGCCTaGCCTGATGGCAATAAATCTGGCCAACTTGTAATA +
Preference number: 3 (lower is better)
Translates to: KLADHTIKGSFA*PDGNKSGQLVI
Trigger: TATTACAAGTTGGCCAGATTTATTGCCATCAGGTCAGGCAAAACTGCCTTTTATGGTGTGGTCTGCCAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR GCA 72 bp CTAACCAAGAGCTCTTTTCACTTCCTGTGTCTTGATTaGATGTGTTTGTACATGAGGCAAGAGGGAGGAAAG +
Preference number: 3 (lower is better)
Translates to: LTKSSFHFLCLD*MCLYMRQEGGK
Trigger: CTTTCCTCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGAGCTCTTGGTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CAA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATATCTCTTGTGCAATCTaGTCCCCAGATCTCTCCTCA +
Preference number: 3 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNISCAI*SPDLSS
Trigger: TGAGGAGAGATCTGGGGACAAGATTGCACAAGAGAT...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 72 bp AGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTaGCATTTCCAATTAATCTCCGCAACAGAAATGGTG +
Preference number: 3 (lower is better)
Translates to: SRFGSWKKVLFL*HFQLISATEMV
Trigger: CACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CAA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATATGCCAAGAAGTAGATTaGGCTCCTGGAAGAAGGTTC +
Preference number: 3 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFICQEVD*APGRRF
Trigger: GAACCTTCTTCCAGGAGCCAAATCTACTTCTTGGCA...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp AATACTTCTAAAATGGCTCTTTACATGATGGCATTCTaGAAACACTTCCATATTATTGCTGGGTGGGGAGGG +
Preference number: 3 (lower is better)
Translates to: NTSKMALYMMAF*KHFHIIAGWGG
Trigger: CCCTCCCCACCCAGCAATAATATGGAAGTGTTTTCAGAATGCCATCATGTAAAGAGCCATTTTAGAAGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 72 bp ATGACGACAGAGATACTCTCTAGAATTCTTCCCTGGTaGCACAAACCCAGACTATTCAGATTAATTTGTTCT +
Preference number: 3 (lower is better)
Translates to: MTTEILSRILPW*HKPRLFRLICS
Trigger: AGAACAAATTAATCTGAATAGTCTGGGTTTGTGCCACCAGGGAAGAATTCTAGAGAGTATCTCTGTCGTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp CTTCAAGAACAACGTTCATTGAAGTTCATGAAAGTATaGAATGTAACTGGTAGAATGATACCACGTGCTCCA +
Preference number: 3 (lower is better)
Translates to: LQEQRSLKFMKV*NVTGRMIPRAP
Trigger: TGGAGCACGTGGTATCATTCTACCAGTTACATTTCATACTTTCATGAACTTCAATGAACGTTGTTCTTGAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR TCA 72 bp CAGCATCTAAGCTTGTTCAAAAGTCCATCCATGAACTaGTCCATCCAGGTAGTCATATACAAATATGTAAAC +
Preference number: 3 (lower is better)
Translates to: QHLSLFKSPSMN*SIQVVIYKYVN
Trigger: GTTTACATATTTGTATATGACTACCTGGATGGATCAGTTCATGGATGGACTTTTGAACAAGCTTAGATGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 72 bp ATCATTTTACAAGTGCCAAGAAGTAGATTTGGCTCCTaGAAGAAGGTTCTATTTCTCTGGCATTTCCAATTA +
Preference number: 3 (lower is better)
Translates to: IILQVPRSRFGS*KKVLFLWHFQL
Trigger: TAATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTGGCACTTGTAAAATGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 72 bp ATAATCTTTGAAGGCAGAGAACCTGACTTTGCTACCTaGCATGTAAATCTAAGTCTTTCTTTTGTATTGGCA +
Preference number: 3 (lower is better)
Translates to: IIFEGREPDFAT*HVNLSLSFVLA
Trigger: TGCCAATACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCCTTCAAAGATTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR-3UTR CAA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAATGGAATTTATGTTTTaGTTTGTCGTGGAGGGGATG +
Preference number: 3 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIMEFMF*FVVEGM
Trigger: CATCCCCTCCACGACAAACAAAAACATAAATTCCAT...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CCA 72 bp TACACACTAACCTTTTTACAGCTTTACATCATAAACTaGGGATCATTTTACAGAAGAGGAAACAGGTTTGAA +
Preference number: 3 (lower is better)
Translates to: YTLTFLQLYIIN*GSFYRRGNRFE
Trigger: TTCAAACCTGTTTCCTCTTCTGTAAAATGATCCCCAGTTTATGATGTAAAGCTGTAAAAAGGTTAGTGTGTA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCCCATCCAGGCCCCGGTaGTTCAGCGAGATAACATAC +
Preference number: 4 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFPSRPR*FSEITY
Trigger: GTATGTTATCTCGCTGAATCACCGGGGCCTGGATGG...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCACCAGAGCTGCAGCTTaGGACCAAGATGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALTRAAA*DQDAVG
Trigger: GCCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCCGGCGGCTCTCACTTaGAGAATTGGGCCCACTGAC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALPAALT*RIGPTD
Trigger: GTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCGG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCCCACGAAGTTACTGTTaGATCGAGAGAAGACCCAGG +
Preference number: 4 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFPRSYC*IERRPR
Trigger: CCTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGG...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGGGTCACATTCCTCTTaGGGCCATCCAGGCCCCGGT +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTGSHSS*GHPGPG
Trigger: ACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGGGTCACATTCCTCTTaGGGCCATCCAGGCCCCGGT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHGSHSS*GHPGPG
Trigger: ACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCATTGGGCCCACTGACTaGAGCCTTCTGGAAGCGATC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALIGPTD*SLLEAI
Trigger: GATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAAT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGGTTCCACCAGGCGATaGCTGGTGAAAGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALGSTRR*LVKGFL
Trigger: CAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCAGGAGACCTCACAGGTaGTGCACGTCTTTACAGCAT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALRRPHR*CTSLQH
Trigger: ATGCTGTAAAGACGTGCATCACCTGTGAGGTCTCCT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGTTCGCTGTTCCGGCTaGCTGCTTGATTTATGGCTT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALVRCSG*LLDLWL
Trigger: AAGCCATAAATCAAGCAGGCAGCCGGAACAGCGAAC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATCTTGTTGGGGTGTGTaGCCCGAAGGCAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTSCWGV*PEGNGH
Trigger: GTGACCGTTGCCTTCGGGCCACACACCCCAACAAGA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATCCAGGCGATGGCTGGTaGAAGGTTTCTTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHPGDGW*KVSCWG
Trigger: ACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGG...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGTTGATGAGGACTGTTaGCCGCTCAAGACACTGGCG +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHVDEDC*PLKTLA
Trigger: CGCCAGTGTCTTGAGCGGTCAACAGTCCTCATCAAC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGCTGAATTCGTCGTCTaGGATCCAGTGGACTGTAAT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALAEFVV*DPVDCN
Trigger: ATTACAGTCCACTGGATCTCAGACGACGAATTCAGC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCGGCAATTAGCAACCTaGTGTGCCAACTTTCTCAGT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALRQLAT*CANFLS
Trigger: ACTGAGAAAGTTGGCACAGCAGGTTGCTAATTGCCG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCTTTTCCTTTAGGATATaGTCAGCTTGGTTGATGAGG +
Preference number: 4 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFFSFRI*SAWLMR
Trigger: CCTCATCAACCAAGCTGAGCATATCCTAAAGGAAAA...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATTGCGAAGATGCAGTTaGCATAGCGACCCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTLRRCS*HSDPLG
Trigger: GCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGAATATATTTCCTGCTaGCCCATAACACCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALEYISC*PITPCA
Trigger: GGCACAGGGTGTTATGGGGCAGCAGGAAATATATTC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGGGATTCTTGAGGCCTaGAGTTGCATTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHGILEA*SCIPAA
Trigger: AGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGACCGCTCAAGACACTaGCGGCAATTAGCAACCTGC +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHDRSRH*RQLATC
Trigger: GCAGGTTGCTAATTGCCGCCAGTGTCTTGAGCGGTC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGGGTCACATTCCTCTTaGGGCCATCCAGGCCCCGGT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAGSHSS*GHPGPG
Trigger: ACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCAATAGCATACCATGTTaGAGAACCCATGACCACCTC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALNSIPC*RTHDHL
Trigger: GAGGTGGTCATGGGTTCTTCAACATGGTATGCTATT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCATAAGTTTTGCCTCATaGATAGCAGTATTCACCTCA +
Preference number: 4 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFISFAS*IAVFTS
Trigger: TGAGGTGAATACTGCTATGCATGAGGCAAAACTTAT...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCAGGATATGCTCAGCTTaGTTGATGAGGACTGTTGAC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALRICSA*LMRTVD
Trigger: GTCAACAGTCCTCATCAACCAAGCTGAGCATATCCT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCTGATGAAGTTAGCCTaGCCAGTGAATATGGTGTAC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALLMKLA*PVNMVY
Trigger: GTACACCATATTCACTGGCCAGGCTAACTTCATCAG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATTCGTTTTTAGTCTGGTaGGTTCGCTGTTCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHSFLVW*VRCSGC
Trigger: GCAGCCGGAACAGCGAACCCACCAGACTAAAAACGA...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCATTGGGCCCACTGACTaGAGCCTTCTGGAAGCGATC +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGIGPTD*SLLEAI
Trigger: GATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAAT...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGTTTCCTCTGCTGGATaGTCTCTACCAACTCGTCAC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTVSSAG*SLPTRH
Trigger: GTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAAC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGTTTCCTCTGCTGGATaGTCTCTACCAACTCGTCAC +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHVSSAG*SLPTRH
Trigger: GTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAAC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATTGGATTCACCAGAGCTaGAGCTTGAGACCAAGATGC +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHWIHQS*SLRPRC
Trigger: GCATCTTGGTCTCAAGCTGCAGCTCTGGTGAATCCA...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATGGATTCACCAGAGCTaGAGCTTGAGACCAAGATGC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTWIHQS*SLRPRC
Trigger: GCATCTTGGTCTCAAGCTGCAGCTCTGGTGAATCCA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCGATCAATAATGTTCTaGAGGGTCACATTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALRSIMF*RVTFLL
Trigger: CAAGAGGAATGTGACCCTGCAGAACATTATTGATCG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCTTCTTCCATAAGTTTTaGCTCATGCATAGCAGTATT +
Preference number: 4 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFFFHKF*LMHSSI
Trigger: AATACTGCTATGCATGAGGCAAAACTTATGGAAGAA...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATCAGAACTTGCGAAGATaGAGTTGCCATAGCGACCCT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHQNLRR*SCHSDP
Trigger: AGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTG...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGTTCGCTGTTCCGGCTaGCTGCTTGATTTATGGCTT +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTVRCSG*LLDLWL
Trigger: AAGCCATAAATCAAGCAGGCAGCCGGAACAGCGAAC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATCCACGAAGTTACTGTTaGATCGAGAGAAGACCCAGG +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHPRSYC*IERRPR
Trigger: CCTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGG...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCATTTCCTTGTTGTTGTaGCGAACCACGAAGTTACTG +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALISLLL*RTTKLL
Trigger: CAGTAACTTCGTGGTTCGGCACAACAACAAGGAAAT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAACCTTCTCATTCTCGTaGTCCAGGCAGGTAATCCCT +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTTFSFS*SRQVIP
Trigger: AGGGATTACCTGCCTGGACCACGAGAATGAGAAGGT...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATGTTCGTTTTTAGTCTaGTGGGTTCGCTGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTCSFLV*WVRCSG
Trigger: GCCGGAACAGCGAACCCACCAGACTAAAAACGAACA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 72 bp ACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATaGGCTTCAGGAGCTACAAGTAAGTGTGGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: TAKYSPMALRLE*ASGATSKCGSG
Trigger: ACCACTCCCACACTTACTTGTAGCTCCTGAAGCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATCTAAAACATAGGCTGTaGGCACAAGGAAGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHLKHRL*AQGSRR
Trigger: CCTTCTGCTTCCTTGTGCTCACAGCCTATGTTTTAG...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGCCCCAACTACACCATaGCTTACTGATGAAGTTAGC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTAPTTP*LTDEVS
Trigger: GCTAACTTCATCAGTAAGTCATGGTGTAGTTGGGGC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATTTCCGGCTGCCTGCTTaGTTTATGGCTTTCACGATA +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHFRLPA*FMAFTI
Trigger: TATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAA...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGCAAGCTTTCATCCCTaGCACATAAGGGGATTCTTG +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTASFHP*HIRGFL
Trigger: CAAGAATCCCCTTATGTGTCAGGGATGAAAGCTTGC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCATCATTTGTTTCCTCTaGTGGATGATCTCTACCAAC +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALIICFL*WMISTN
Trigger: GTTGGTAGAGATCATCCAGCAGAGGAAACAAATGAT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACACGGCAATTAGCAACCTaGTGTGCCAACTTTCTCAGT +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTRQLAT*CANFLS
Trigger: ACTGAGAAAGTTGGCACAGCAGGTTGCTAATTGCCG...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTTTCCTTTAGGATATaGTCAGCTTGGTTGATGAGG +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALFSFRI*SAWLMR
Trigger: CCTCATCAACCAAGCTGAGCATATCCTAAAGGAAAA...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTACCGGCGGCTCTCACTTaGAGAATTGGGCCCACTGAC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVPAALT*RIGPTD
Trigger: GTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCGG...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGTCTTGTTGGGGTGTGTaGCCCGAAGGCAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMESCWGV*PEGNGH
Trigger: GTGACCGTTGCCTTCGGGCCACACACCCCAACAAGA...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTTCTTGTTGGGGTGTGTaGCCCGAAGGCAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEASCWGV*PEGNGH
Trigger: GTGACCGTTGCCTTCGGGCCACACACCCCAACAAGA...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGACCAGAGCTGCAGCTTaGGACCAAGATGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMTRAAA*DQDAVG
Trigger: GCCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGT...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGCCAGGCGATGGCTGGTaGAAGGTTTCTTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEPGDGW*KVSCWG
Trigger: ACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGG...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGTTGATGAGGACTGTTaGCCGCTCAAGACACTGGCG +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAVDEDC*PLKTLA
Trigger: CGCCAGTGTCTTGAGCGGTCAACAGTCCTCATCAAC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCGCACCGGCCAATCTTaGGCAGCTTACTGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEARTGQS*AAYCFL
Trigger: AAGGAAGCAGTAAGCTGCTCAAGATTGGCCGGTGCG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCATCTTCAACTTCTTGTaGGTCATTTTGGGATCTAGT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALIFNFL*VILGSS
Trigger: ACTAGATCCCAAAATGACTCACAAGAAGTTGAAGAT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCATTTGTTCCAGATTGTaGATGTTGGACAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALICSRL*MLDKLE
Trigger: TTCCAGTTTGTCCAACATTCACAATCTGGAACAAAT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTTTGCGAAGATGCAGTTaGCATAGCGACCCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEALRRCS*HSDPLG
Trigger: GCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAA...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCCCACGAAGTTACTGTTaGATCGAGAGAAGACCCAGG +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGPRSYC*IERRPR
Trigger: CCTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGG...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGCTTGAGGCCTGCAGTTaGATTCCTGCCGCTCAGGAT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMELEACS*IPAAQD
Trigger: ATCCTGAGCGGCAGGAATGCAACTGCAGGCCTCAAG...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGGGATTCTTGAGGCCTaGAGTTGCATTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAGILEA*SCIPAA
Trigger: AGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACACTGCATGTAGGACACTaGAAAGCAGTAATGGGTTCA +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTLHVGH*KAVMGS
Trigger: TGAACCCATTACTGCTTTCCAGTGTCCTACATGCAG...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGCCGGCGGCTCTCACTTaGAGAATTGGGCCCACTGAC +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMPAALT*RIGPTD
Trigger: GTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCGG...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGACCGCTCAAGACACTaGCGGCAATTAGCAACCTGC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEADRSRH*RQLATC
Trigger: GCAGGTTGCTAATTGCCGCCAGTGTCTTGAGCGGTC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATAGGATATGCTCAGCTTaGTTGATGAGGACTGTTGAC +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHRICSA*LMRTVD
Trigger: GTCAACAGTCCTCATCAACCAAGCTGAGCATATCCT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTCTGCAATCCATCATTaGAGATCTTCAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALSAIHH*RSSTSC
Trigger: ACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGA...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTCATCTCGAGAGTTTaGTTTAGTTTCTCAAATCGA +
Preference number: 4 (lower is better)
Translates to: GGLRGEVLNRRASDLHALFISRV*FSFSNR
Trigger: TCGATTTGAGAAACTAAAGCAAACTCTCGAGATGAA...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATAGGAAGAGGCATTCTTaGCAATCCACTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHRKRHS*QSTHSL
Trigger: CAAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACACTGACTGAAGCCTTCTaGAAGCGATCAATAATGTTC +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTLTEAF*KRSIMF
Trigger: GAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAG...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGACCGCTCAAGACACTaGCGGCAATTAGCAACCTGC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVDRSRH*RQLATC
Trigger: GCAGGTTGCTAATTGCCGCCAGTGTCTTGAGCGGTC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCTCGTCTGAGATCCAGTaGACTGTAATGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGSSEIQ*TVMVSW
Trigger: CCATGACACCATTACAGTCCACTGGATCTCAGACGA...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATATGGAGAGAGTTAGCTaGGTCATAGAAAGACAGCAT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHMERVS*VIERQH
Trigger: ATGCTGTCTTTCTATGACCCAGCTAACTCTCTCCAT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGCCATCCAGGCCCCGGTaGTTCAGCGAGATAACATAC +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMPSRPR*FSEITY
Trigger: GTATGTTATCTCGCTGAATCACCGGGGCCTGGATGG...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGAAGGAGACCTCACAGGTaGTGCACGTCTTTACAGCAT +
Preference number: 4 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGRRPHR*CTSLQH
Trigger: ATGCTGTAAAGACGTGCATCACCTGTGAGGTCTCCT...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATGGTTCCACCAGGCGATaGCTGGTGAAAGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNGSTRR*LVKGFL
Trigger: CAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACC...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGACCTTCTCATTCTCGTaGTCCAGGCAGGTAATCCCT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMETFSFS*SRQVIP
Trigger: AGGGATTACCTGCCTGGACCACGAGAATGAGAAGGT...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATTCACCTCAACTTGCTaGCAGATCTGTATTAGTTTG +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTFTSTC*QICISL
Trigger: CAAACTAATACAGATCTGCCAGCAAGTTGAGGTGAA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCCTGATGAAGTTAGCCTaGCCAGTGAATATGGTGTAC +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGLMKLA*PVNMVY
Trigger: GTACACCATATTCACTGGCCAGGCTAACTTCATCAG...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTATCGTTTTTAGTCTGGTaGGTTCGCTGTTCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVSFLVW*VRCSGC
Trigger: GCAGCCGGAACAGCGAACCCACCAGACTAAAAACGA...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 72 bp AGCTCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTaGTACATGAGGCAAGAGGGAGGAAAGAACGGCTGT +
Preference number: 4 (lower is better)
Translates to: SSFHFLCLDCMC*YMRQEGGKNGC
Trigger: ACAGCCGTTCTTTCCTCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 72 bp CAGATGTTCATATTTCTGTTACTAGGAGAGACACTATaGGTCCAGAGCTCCCAGTACAAACAAGCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: QMFIFLLLGETL*VQSSQYKQAWG
Trigger: ACCCCAGGCTTGTTTGTACTGGGAGCTCTGGACCAATAGTGTCTCTCCTAGTAACAGAAATATGAACATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TCTATTTCTCTGGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACACCAGGCGATGGCTGGTaGAAGGTTTCTTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: SISLAFPINLRNRNGEITPGDGW*KVSCWG
Trigger: ACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGG...TGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGTTTCCTCTGCTGGATaGTCTCTACCAACTCGTCAC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVVSSAG*SLPTRH
Trigger: GTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAAC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTGCTGAATTCGTCGTCTaGGATCCAGTGGACTGTAAT +
Preference number: 4 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFAEFVV*DPVDCN
Trigger: ATTACAGTCCACTGGATCTCAGACGACGAATTCAGC...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGATTCCGGCTGCCTGCTTaGTTTATGGCTTTCACGATA +
Preference number: 4 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGFRLPA*FMAFTI
Trigger: TATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAA...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATATCTTCAACTTCTTGTaGGTCATTTTGGGATCTAGT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHIFNFL*VILGSS
Trigger: ACTAGATCCCAAAATGACTCACAAGAAGTTGAAGAT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATTGGATTCACCAGAGCTaGAGCTTGAGACCAAGATGC +
Preference number: 4 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNWIHQS*SLRPRC
Trigger: GCATCTTGGTCTCAAGCTGCAGCTCTGGTGAATCCA...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTACAGAACTTGCGAAGATaGAGTTGCCATAGCGACCCT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVQNLRR*SCHSDP
Trigger: AGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTG...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGTTCGCTGTTCCGGCTaGCTGCTTGATTTATGGCTT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVVRCSG*LLDLWL
Trigger: AAGCCATAAATCAAGCAGGCAGCCGGAACAGCGAAC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGAATATATTTCCTGCTaGCCCATAACACCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAEYISC*PITPCA
Trigger: GGCACAGGGTGTTATGGGGCAGCAGGAAATATATTC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTGAATATATTTCCTGCTaGCCCATAACACCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFEYISC*PITPCA
Trigger: GGCACAGGGTGTTATGGGGCAGCAGGAAATATATTC...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCATTTCCTTGTTGTTGTaGCGAACCACGAAGTTACTG +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGISLLL*RTTKLL
Trigger: CAGTAACTTCGTGGTTCGGCACAACAACAAGGAAAT...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGGTTCCACCAGGCGATaGCTGGTGAAAGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMGSTRR*LVKGFL
Trigger: CAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACC...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATACCTTCTCATTCTCGTaGTCCAGGCAGGTAATCCCT +
Preference number: 4 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNTFSFS*SRQVIP
Trigger: AGGGATTACCTGCCTGGACCACGAGAATGAGAAGGT...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTTCGTCTGAGATCCAGTaGACTGTAATGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEASSEIQ*TVMVSW
Trigger: CCATGACACCATTACAGTCCACTGGATCTCAGACGA...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGTCGTCTGAGATCCAGTaGACTGTAATGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMESSEIQ*TVMVSW
Trigger: CCATGACACCATTACAGTCCACTGGATCTCAGACGA...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTACATTTCCTTATCTCTaGCCACAGGCCCCAACTACA +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEATFPYL*PQAPTT
Trigger: TGTAGTTGGGGCCTGTGGCCAGAGATAAGGAAATGT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTATGTTCGTTTTTAGTCTaGTGGGTTCGCTGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVCSFLV*WVRCSG
Trigger: GCCGGAACAGCGAACCCACCAGACTAAAAACGAACA...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATTCTGCAATCCATCATTaGAGATCTTCAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHSAIHH*RSSTSC
Trigger: ACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGA...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACACCAGATTGTGAATGTTaGACAAACTGGAAGAATGAA +
Preference number: 4 (lower is better)
Translates to: LRGEVLNRRASDLHALLTPDCEC*TNWKNE
Trigger: TTCATTCTTCCAGTTTGTCCAACATTCACAATCTGG...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATACCATCCAGGCCCCGGTaGTTCAGCGAGATAACATAC +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIPSRPR*FSEITY
Trigger: GTATGTTATCTCGCTGAATCACCGGGGCCTGGATGG...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGCTGAATTCGTCGTCTaGGATCCAGTGGACTGTAAT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVAEFVV*DPVDCN
Trigger: ATTACAGTCCACTGGATCTCAGACGACGAATTCAGC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTAATAGCATACCATGTTaGAGAACCCATGACCACCTC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEANSIPC*RTHDHL
Trigger: GAGGTGGTCATGGGTTCTTCAACATGGTATGCTATT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATGCAAGCTTTCATCCCTaGCACATAAGGGGATTCTTG +
Preference number: 4 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNASFHP*HIRGFL
Trigger: CAAGAATCCCCTTATGTGTCAGGGATGAAAGCTTGC...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTTTGCGAAGATGCAGTTaGCATAGCGACCCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVLRRCS*HSDPLG
Trigger: GCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAA...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTCTTGAGGCCTGCAGTTaGATTCCTGCCGCTCAGGAT +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVLEACS*IPAAQD
Trigger: ATCCTGAGCGGCAGGAATGCAACTGCAGGCCTCAAG...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAGGGATTCTTGAGGCCTaGAGTTGCATTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIGILEA*SCIPAA
Trigger: AGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCC...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCTGCATGTAGGACACTaGAAAGCAGTAATGGGTTCA +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEALHVGH*KAVMGS
Trigger: TGAACCCATTACTGCTTTCCAGTGTCCTACATGCAG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTCTGATGAAGTTAGCCTaGCCAGTGAATATGGTGTAC +
Preference number: 4 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFLMKLA*PVNMVY
Trigger: GTACACCATATTCACTGGCCAGGCTAACTTCATCAG...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 72 bp CAATTTCTATGTAGCATTAGCATCTCTTGTGCAATCTaGTCCCCAGATCTCTCCTCATCTAACCAAGAGCTC +
Preference number: 4 (lower is better)
Translates to: QFLCSISISCAI*SPDLSSSNQEL
Trigger: GAGCTCTTGGTTAGATGAGGAGAGATCTGGGGACAAGATTGCACAAGAGATGCTAATGCTACATAGAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGTTCCGGCTGCCTGCTTaGTTTATGGCTTTCACGATA +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMFRLPA*FMAFTI
Trigger: TATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAA...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATAATAGCATACCATGTTaGAGAACCCATGACCACCTC +
Preference number: 4 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNNSIPC*RTHDHL
Trigger: GAGGTGGTCATGGGTTCTTCAACATGGTATGCTATT...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCGTAACATCAAAAGTATaGAGATGGAGAGAGTTAGCT +
Preference number: 4 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGVTSKV*RWRELA
Trigger: AGCTAACTCTCTCCATCTTCATACTTTTGATGTTAC...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGCGGCAATTAGCAACCTaGTGTGCCAACTTTCTCAGT +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMRQLAT*CANFLS
Trigger: ACTGAGAAAGTTGGCACAGCAGGTTGCTAATTGCCG...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTATTTCCTTGTTGTTGTaGCGAACCACGAAGTTACTG +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAISLLL*RTTKLL
Trigger: CAGTAACTTCGTGGTTCGGCACAACAACAAGGAAAT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCTGACTGAAGCCTTCTaGAAGCGATCAATAATGTTC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEALTEAF*KRSIMF
Trigger: GAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTATTTGTTTCCTCTGCTaGATGATCTCTACCAACTCG +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAICFLC*MISTNS
Trigger: CGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAAT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTATTTGTTTCCTCTGCTaGATGATCTCTACCAACTCG +
Preference number: 4 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFICFLC*MISTNS
Trigger: CGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAAT...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAAGGATATGCTCAGCTTaGTTGATGAGGACTGTTGAC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVRICSA*LMRTVD
Trigger: GTCAACAGTCCTCATCAACCAAGCTGAGCATATCCT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATATCGTTTTTAGTCTGGTaGGTTCGCTGTTCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFISFLVW*VRCSGC
Trigger: GCAGCCGGAACAGCGAACCCACCAGACTAAAAACGA...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTATGGAGAGAGTTAGCTaGGTCATAGAAAGACAGCAT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAMERVS*VIERQH
Trigger: ATGCTGTCTTTCTATGACCCAGCTAACTCTCTCCAT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAAGGAGACCTCACAGGTaGTGCACGTCTTTACAGCAT +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIRRPHR*CTSLQH
Trigger: ATGCTGTAAAGACGTGCATCACCTGTGAGGTCTCCT...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TCTATTTCTCTGGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACAGCAAGCTTTCATCCCTaGCACATAAGGGGATTCTTG +
Preference number: 4 (lower is better)
Translates to: SISLAFPINLRNRNGEITASFHP*HIRGFL
Trigger: CAAGAATCCCCTTATGTGTCAGGGATGAAAGCTTGC...TGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTACGATCAATAATGTTCTaGAGGGTCACATTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVRSIMF*RVTFLL
Trigger: CAAGAGGAATGTGACCCTGCAGAACATTATTGATCG...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGTATTCACCTCAACTTaGTGGCAGATCTGTATTAGT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAVFTST*WQICIS
Trigger: ACTAATACAGATCTGCCAGCAAGTTGAGGTGAATAC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGTATTCACCTCAACTTaGTGGCAGATCTGTATTAGT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEVFTST*WQICIS
Trigger: ACTAATACAGATCTGCCAGCAAGTTGAGGTGAATAC...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTATCATTTGTTTCCTCTaGTGGATGATCTCTACCAAC +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAIICFL*WMISTN
Trigger: GTTGGTAGAGATCATCCAGCAGAGGAAACAAATGAT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGATTAGCAACCTGCTGTaGCAACTTTCTCAGTTTCAT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEISNLL*QLSQFH
Trigger: ATGAAACTGAGAAAGTTGGCACAGCAGGTTGCTAAT...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTCAGAACTTGCGAAGATaGAGTTGCCATAGCGACCCT +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVQNLRR*SCHSDP
Trigger: AGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTG...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGATTCACCTCAACTTGCTaGCAGATCTGTATTAGTTTG +
Preference number: 4 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGFTSTC*QICISL
Trigger: CAAACTAATACAGATCTGCCAGCAAGTTGAGGTGAA...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAATTTGTTTCCTCTGCTaGATGATCTCTACCAACTCG +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVICFLC*MISTNS
Trigger: CGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAAT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGTGCAGAAACCGTGCTTaGTCATTTTCCTTTAGGATA +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMECRNRA*SFSFRI
Trigger: TATCCTAAAGGAAAATGACCAAGCACGGTTTCTGCA...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTTGTTCGTTTTTAGTCTaGTGGGTTCGCTGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVCSFLV*WVRCSG
Trigger: GCCGGAACAGCGAACCCACCAGACTAAAAACGAACA...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAATGGAGAGAGTTAGCTaGGTCATAGAAAGACAGCAT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVMERVS*VIERQH
Trigger: ATGCTGTCTTTCTATGACCCAGCTAACTCTCTCCAT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTCTAAAACATAGGCTGTaGGCACAAGGAAGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVLKHRL*AQGSRR
Trigger: CCTTCTGCTTCCTTGTGCTCACAGCCTATGTTTTAG...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATACTAAAACATAGGCTGTaGGCACAAGGAAGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFILKHRL*AQGSRR
Trigger: CCTTCTGCTTCCTTGTGCTCACAGCCTATGTTTTAG...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGTAACATCAAAAGTATaGAGATGGAGAGAGTTAGCT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAVTSKV*RWRELA
Trigger: AGCTAACTCTCTCCATCTTCATACTTTTGATGTTAC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTATAAGTTTTGCCTCATaGATAGCAGTATTCACCTCA +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAISFAS*IAVFTS
Trigger: TGAGGTGAATACTGCTATGCATGAGGCAAAACTTAT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGAATAAGTTTTGCCTCATaGATAGCAGTATTCACCTCA +
Preference number: 4 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGISFAS*IAVFTS
Trigger: TGAGGTGAATACTGCTATGCATGAGGCAAAACTTAT...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAATTAGCAACCTGCTGTaGCAACTTTCTCAGTTTCAT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVISNLL*QLSQFH
Trigger: ATGAAACTGAGAAAGTTGGCACAGCAGGTTGCTAAT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGAGGAAGAGGCATTCTTaGCAATCCACTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMRKRHS*QSTHSL
Trigger: CAAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCT...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGTCTGCAATCCATCATTaGAGATCTTCAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMESAIHH*RSSTSC
Trigger: ACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGA...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGAATGTTGGACAAACTaGAAGAATGAAGGTAACATC +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEECWTN*KNEGNI
Trigger: GATGTTACCTTCATTCTTCCAGTTTGTCCAACATTC...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGCCAGATTGTGAATGTTaGACAAACTGGAAGAATGAA +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEPDCEC*TNWKNE
Trigger: TTCATTCTTCCAGTTTGTCCAACATTCACAATCTGG...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCCAGATTGTGAATGTTaGACAAACTGGAAGAATGAA +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAPDCEC*TNWKNE
Trigger: TTCATTCTTCCAGTTTGTCCAACATTCACAATCTGG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAATCTTCAACTTCTTGTaGGTCATTTTGGGATCTAGT +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVIFNFL*VILGSS
Trigger: ACTAGATCCCAAAATGACTCACAAGAAGTTGAAGAT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAATTTGTTCCAGATTGTaGATGTTGGACAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVICSRL*MLDKLE
Trigger: TTCCAGTTTGTCCAACATTCACAATCTGGAACAAAT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTTTCTTCCATAAGTTTTaGCTCATGCATAGCAGTATT +
Preference number: 4 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAFFHKF*LMHSSI
Trigger: AATACTGCTATGCATGAGGCAAAACTTATGGAAGAA...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGTTCTTCCATAAGTTTTaGCTCATGCATAGCAGTATT +
Preference number: 4 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEFFHKF*LMHSSI
Trigger: AATACTGCTATGCATGAGGCAAAACTTATGGAAGAA...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATACTGCATGTAGGACACTaGAAAGCAGTAATGGGTTCA +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFILHVGH*KAVMGS
Trigger: TGAACCCATTACTGCTTTCCAGTGTCCTACATGCAG...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGTGCAGAAACCGTGCTTaGTCATTTTCCTTTAGGATA +
Preference number: 4 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMCRNRA*SFSFRI
Trigger: TATCCTAAAGGAAAATGACCAAGCACGGTTTCTGCA...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAGAATGTTGGACAAACTaGAAGAATGAAGGTAACATC +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVECWTN*KNEGNI
Trigger: GATGTTACCTTCATTCTTCCAGTTTGTCCAACATTC...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTATTCATCTCGAGAGTTTaGTTTAGTTTCTCAAATCGA +
Preference number: 4 (lower is better)
Translates to: GREPDFATWHVNLSLSFVFISRV*FSFSNR
Trigger: TCGATTTGAGAAACTAAAGCAAACTCTCGAGATGAA...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp TCTATTTCTCTGGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACATTTTCCTTTAGGATATaGTCAGCTTGGTTGATGAGG +
Preference number: 4 (lower is better)
Translates to: SISLAFPINLRNRNGEITFSFRI*SAWLMR
Trigger: CCTCATCAACCAAGCTGAGCATATCCTAAAGGAAAA...TGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTAGGAAGAGGCATTCTTaGCAATCCACTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVRKRHS*QSTHSL
Trigger: CAAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCT...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp TCTATTTCTCTGGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACAATTTGTTCCAGATTGTaGATGTTGGACAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: SISLAFPINLRNRNGEITICSRL*MLDKLE
Trigger: TTCCAGTTTGTCCAACATTCACAATCTGGAACAAAT...TGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTGTATTCACCTCAACTTaGTGGCAGATCTGTATTAGT +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVVFTST*WQICIS
Trigger: ACTAATACAGATCTGCCAGCAAGTTGAGGTGAATAC...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAATCATTTGTTTCCTCTaGTGGATGATCTCTACCAAC +
Preference number: 4 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIIICFL*WMISTN
Trigger: GTTGGTAGAGATCATCCAGCAGAGGAAACAAATGAT...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR GCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTATTAGCAACCTGCTGTaGCAACTTTCTCAGTTTCAT +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVISNLL*QLSQFH
Trigger: ATGAAACTGAGAAAGTTGGCACAGCAGGTTGCTAAT...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTTGCAGAAACCGTGCTTaGTCATTTTCCTTTAGGATA +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVCRNRA*SFSFRI
Trigger: TATCCTAAAGGAAAATGACCAAGCACGGTTTCTGCA...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CCA 90 bp TCTATTTCTCTGGCATTTCCAATTAATCTCCGCAACAGAAATGGTGAAATCACAGAATGTTGGACAAACTaGAAGAATGAAGGTAACATC +
Preference number: 4 (lower is better)
Translates to: SISLAFPINLRNRNGEITECWTN*KNEGNI
Trigger: GATGTTACCTTCATTCTTCCAGTTTGTCCAACATTC...TGTGATTTCACCATTTCTGTTGCGGAGATTAATTGGAAATGCCAGAGAAATAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR TCA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTGTAACATCAAAAGTATaGAGATGGAGAGAGTTAGCT +
Preference number: 4 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVVTSKV*RWRELA
Trigger: AGCTAACTCTCTCCATCTTCATACTTTTGATGTTAC...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
3UTR CAA 72 bp AAAGCGACAGCAACCATGTTTATAGAATCATCTTTCTaGATGATGTTAAATGGTCATGTTCCATTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: KATATMFIESSF*MMLNGHVPLVQ
Trigger: TTGCACCAATGGAACATGACCATTTAACATCATCAAGAAAGATGATTCTATAAACATGGTTGCTGTCGCTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCAGGGTCACATTCCTCTaGAGGCCATCCAGGCCCCGG +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALRVTFL*RPSRPR
Trigger: CCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGGAGGGTCTCAGTGTGCCAGGGGAGTGCCACAGGGAGCCACAAATGCCAATTCACCACGAAGTTACTGTaGCATCGAGAGAAGACCCAG +
Preference number: 5 (lower is better)
Translates to: GRVSVCQGSATGSHKCQFTTKLL*HREKTQ
Trigger: CTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGGT...GAATTGGCATTTGTGGCTCCCTGTGGCACTCCCCTGGCACACTGAGACCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS TCA 90 bp CTCGAAGATGTGTGTCTGAAACTGGTTCCACCAGGCGATGGCTGGTaGAAGGTTTCTTGTTGGGGTGTGTGGCCCGAAGGCAACGGTCAC +
Preference number: 5 (lower is better)
Translates to: LEDVCLKLVPPGDGW*KVSCWGVWPEGNGH
Trigger: GTGACCGTTGCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCTCTCACTTGGAGAATaGGGCCCACTGACTGAAGCC +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALLSLGE*GPLTEA
Trigger: GGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCCTGGTGAAAGGTTTCTaGTTGGGGTGTGTGGCCCGA +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALLVKGF*LGCVAR
Trigger: TCGGGCCACACACCCCAACAAGAAACCTTTCACCAG...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACACACCAGAGCTGCAGCTaGAGACCAAGATGCGGTGGG +
Preference number: 5 (lower is better)
Translates to: LRGEVLNRRASDLHALLTHQSCS*RPRCGG
Trigger: CCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGTG...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS TCA 90 bp AGTCCTCTCCCGGCGGCTCTCACTTGGAGAATTGGGCCCACTGACTaGAGCCTTCTGGAAGCGATCAATAATGTTCTGCAGGGTCACATT +
Preference number: 5 (lower is better)
Translates to: SPLPAALTWRIGPTD*SLLEAINNVLQGHI
Trigger: AATGTGACCCTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCGGGAGAGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS GCA 90 bp CACCTCCCAGTAGTGGCAGCCACTGTCGATGAATATATTTCCTGCTaGCCCATAACACCCTGTGCCACTAAATCTCTCCGGAGTGTGGCT +
Preference number: 5 (lower is better)
Translates to: HLPVVAATVDEYISC*PITPCATKSLRSVA
Trigger: AGCCACACTCCGGAGAGATTTAGTGGCACAGGGTGTTATGGGGCAGCAGGAAATATATTCATCGACAGTGGCTGCCACTACTGGGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CCA 90 bp CGGCGGCTCTCACTTGGAGAATTGGGCCCACTGACTGAAGCCTTCTaGAAGCGATCAATAATGTTCTGCAGGGTCACATTCCTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: RRLSLGELGPLTEAF*KRSIMFCRVTFLLR
Trigger: CCTCAAGAGGAATGTGACCCTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS CCA 90 bp GTAATCCCTCGAAGATGTGTGTCTGAAACTGGTTCCACCAGGCGATaGCTGGTGAAAGGTTTCTTGTTGGGGTGTGTGGCCCGAAGGCAA +
Preference number: 5 (lower is better)
Translates to: VIPRRCVSETGSTRR*LVKGFLLGCVARRQ
Trigger: TTGCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCGAGGGATTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS-3UTR CAA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCAGGGTCACATTCCTCTaGAGGCCATCCAGGCCCCGG +
Preference number: 5 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGRVTFL*RPSRPR
Trigger: CCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCT...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGCGCACCGGCCAATCTaGAGCAGCTTACTGCTTCCT +
Preference number: 5 (lower is better)
Translates to: LRGEVLNRRASDLHALLTAHRPI*SSLLLP
Trigger: AGGAAGCAGTAAGCTGCTCAAGATTGGCCGGTGCGC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGTTCCGGCTGCCTGCTaGATTTATGGCTTTCACGAT +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALVPAAC*IYGFHD
Trigger: ATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAAC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCACCACGAAGTTACTGTaGCATCGAGAGAAGACCCAG +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALTTKLL*HREKTQ
Trigger: CTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGGT...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS TCA 90 bp ATGTTCTGCAGGGTCACATTCCTCTTGAGGCCATCCAGGCCCCGGTaGTTCAGCGAGATAACATACCTGCATGTAGGACACTGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: MFCRVTFLLRPSRPR*FSEITYLHVGHWKA
Trigger: TGCTTTCCAGTGTCCTACATGCAGGTATGTTATCTCGCTGAATCACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCTGCAGAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS GCA 90 bp CGTCTTTACAGCATCTCTCGGAGGGTCCTGCTCACAGAATTGACATaGAATTCTCTCACTCGACATGGCGGAGCTAGGCCTGTAAGTCCT +
Preference number: 5 (lower is better)
Translates to: RLYSISRRVLLTELT*NSLTRHGGARPVSP
Trigger: AGGACTTACAGGCCTAGCTCCGCCATGTCGAGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGACCCTCCGAGAGATGCTGTAAAGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS-3UTR CAA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACAGTGAAAGGTTTCTTGTaGGGGTGTGTGGCCCGAAGG +
Preference number: 5 (lower is better)
Translates to: LRGEVLNRRASDLHALLTVKGFL*GCVARR
Trigger: CCTTCGGGCCACACACCCCAACAAGAAACCTTTCAC...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS TCA 90 bp CTCATTCTCGTGGTCCAGGCAGGTAATCCCTCGAAGATGTGTGTCTaGAACTGGTTCCACCAGGCGATGGCTGGTGAAAGGTTTCTTGTT +
Preference number: 5 (lower is better)
Translates to: LILVVQAGNPSKMCV*NWFHQAMAGERFLV
Trigger: AACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCGAGGGATTACCTGCCTGGACCACGAGAATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCGTCCTGCTCACAGAATaGACATGCAATTCTCTCACT +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALVLLTE*TCNSLT
Trigger: AGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGAC...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTTTCTAGTTCACTGTaGCGCTTAACCAGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: GGLRGEVLNRRASDLHALFSSSL*RLTRLV
Trigger: CACCAACCTGGTTAAGCGCAACAGTGAACTAGAAAA...GAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATTCCACCAGCATTTCCTaGTTGTTGTGCCGAACCACG +
Preference number: 5 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHSTSIS*LLCRTT
Trigger: CGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGA...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATCCACCAGCATTTCCTaGTTGTTGTGCCGAACCACG +
Preference number: 5 (lower is better)
Translates to: LRGEVLNRRASDLHALLTSTSIS*LLCRTT
Trigger: CGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCACCAGAGCTGCAGCTaGAGACCAAGATGCGGTGGG +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAHQSCS*RPRCGG
Trigger: CCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGTG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGCTCTCTTGACATTGCGCTTAACCAGGTaGGTGAGGTTCATCTCGAGA +
Preference number: 5 (lower is better)
Translates to: LRGEVLNRRASDLHALLTLRLTR*VRFISR
Trigger: TCTCGAGATGAACCTCACCAACCTGGTTAAGCGCAA...TGTCAAGAGAGCATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATATATGCTCAGCTTGGTaGATGAGGACTGTTGACCGC +
Preference number: 5 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHICSAW*MRTVDR
Trigger: GCGGTCAACAGTCCTCATCAACCAAGCTGAGCATAT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATGTTCCGGCTGCCTGCTaGATTTATGGCTTTCACGAT +
Preference number: 5 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHVPAAC*IYGFHD
Trigger: ATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAAC...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATACCAGCATTTCCTTGTaGTTGTGCCGAACCACGAAG +
Preference number: 5 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHTSISL*LCRTTK
Trigger: CTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGCACCAGAGCTGCAGCTaGAGACCAAGATGCGGTGGG +
Preference number: 5 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMHQSCS*RPRCGG
Trigger: CCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGTG...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCTCTCACTTGGAGAATaGGGCCCACTGACTGAAGCC +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEALSLGE*GPLTEA
Trigger: GGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGTGAAAGGTTTCTTGTaGGGGTGTGTGGCCCGAAGG +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAVKGFL*GCVARR
Trigger: CCTTCGGGCCACACACCCCAACAAGAAACCTTTCAC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGAGTGAAAGGTTTCTTGTaGGGGTGTGTGGCCCGAAGG +
Preference number: 5 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGVKGFL*GCVARR
Trigger: CCTTCGGGCCACACACCCCAACAAGAAACCTTTCAC...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGCTGGTGAAAGGTTTCTaGTTGGGGTGTGTGGCCCGA +
Preference number: 5 (lower is better)
Translates to: RVLPMDFSLHLIYGALMELVKGF*LGCVAR
Trigger: TCGGGCCACACACCCCAACAAGAAACCTTTCACCAG...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACTAATGGAGGCTTAAGAGGGGAAGTGCTGAACCGGAGAGCCAGTGACTTACATAGCATTTCCTTGTTGTaGTGCCGAACCACGAAGTTA +
Preference number: 5 (lower is better)
Translates to: TNGGLRGEVLNRRASDLHSISLL*CRTTKL
Trigger: TAACTTCGTGGTTCGGCACAACAACAAGGAAATGCT...ATGTAAGTCACTGGCTCTCCGGTTCAGCACTTCCCCTCTTAAGCCTCCATTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 90 bp CTGCTGGATGATCTCTACCAACTCGTCACATTCTTCCATAAGTTTTaGCTCATGCATAGCAGTATTCACCTCAACTTGCTGGCAGATCTG +
Preference number: 5 (lower is better)
Translates to: LLDDLYQLVTFFHKF*LMHSSIHLNLLADL
Trigger: CAGATCTGCCAGCAAGTTGAGGTGAATACTGCTATGCATGAGGCAAAACTTATGGAAGAATGTGACGAGTTGGTAGAGATCATCCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp ACAAGGCTGGGAGTTTTATCATACCACAAGCCAACTACCAGCACTGTTGAATTTTTGCGCTTAACCAGGTaGGTGAGGTTCATCTCGAGA +
Preference number: 5 (lower is better)
Translates to: TRLGVLSYHKPTTSTVEFLRLTR*VRFISR
Trigger: TCTCGAGATGAACCTCACCAACCTGGTTAAGCGCAA...AAATTCAACAGTGCTGGTAGTTGGCTTGTGGTATGATAAAACTCCCAGCCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGATATGCTCAGCTTGGTaGATGAGGACTGTTGACCGC +
Preference number: 5 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEICSAW*MRTVDR
Trigger: GCGGTCAACAGTCCTCATCAACCAAGCTGAGCATAT...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGAGTTCCGGCTGCCTGCTaGATTTATGGCTTTCACGAT +
Preference number: 5 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGVPAAC*IYGFHD
Trigger: ATCGTGAAAGCCATAAATCAAGCAGGCAGCCGGAAC...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CAACTTGTAATACACAGCCAAATACAGCCCAATGGCTCTAAGGCTGGAATTGGCCAGGAAGAGGCATTCTaGCCAATCCACTCATTCTTT +
Preference number: 5 (lower is better)
Translates to: QLVIHSQIQPNGSKAGIGQEEAF*PIHSFF
Trigger: AAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCTG...GCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTGTATTACAAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGACCACGAAGTTACTGTaGCATCGAGAGAAGACCCAG +
Preference number: 5 (lower is better)
Translates to: RVLPMDFSLHLIYGALMETTKLL*HREKTQ
Trigger: CTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGGT...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTACCAGCATTTCCTTGTaGTTGTGCCGAACCACGAAG +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEATSISL*LCRTTK
Trigger: CTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTATCCACCAGCATTTCCTaGTTGTTGTGCCGAACCACG +
Preference number: 5 (lower is better)
Translates to: GREPDFATWHVNLSLSFVSTSIS*LLCRTT
Trigger: CGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGA...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGACACATAAGGGGATTCTaGAGGCCTGCAGTTGCATTC +
Preference number: 5 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGHIRGF*RPAVAF
Trigger: GAATGCAACTGCAGGCCTCAAGAATCCCCTTATGTG...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CAAGAAGTAGATTTGGCTCCTGGAAGAAGGTTCTATTTCTCTGGCATTTCCAATTTGCGCTTAACCAGGTaGGTGAGGTTCATCTCGAGA +
Preference number: 5 (lower is better)
Translates to: QEVDLAPGRRFYFSGISNLRLTR*VRFISR
Trigger: TCTCGAGATGAACCTCACCAACCTGGTTAAGCGCAA...ATTGGAAATGCCAGAGAAATAGAACCTTCTTCCAGGAGCCAAATCTACTTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAACCAGCATTTCCTTGTaGTTGTGCCGAACCACGAAG +
Preference number: 5 (lower is better)
Translates to: GREPDFATWHVNLSLSFVTSISL*LCRTTK
Trigger: CTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATACTCTCACTTGGAGAATaGGGCCCACTGACTGAAGCC +
Preference number: 5 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFILSLGE*GPLTEA
Trigger: GGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAG...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGTCCTGCTCACAGAATaGACATGCAATTCTCTCACT +
Preference number: 5 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEVLLTE*TCNSLT
Trigger: AGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGAC...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTGTCCTGCTCACAGAATaGACATGCAATTCTCTCACT +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAVLLTE*TCNSLT
Trigger: AGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGAC...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTCAGGAAGAGGCATTCTaGCCAATCCACTCATTCTTT +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAQEEAF*PIHSFF
Trigger: AAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCTG...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTAGCATTTCCTTGTTGTaGTGCCGAACCACGAAGTTA +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEASISLL*CRTTKL
Trigger: TAACTTCGTGGTTCGGCACAACAACAAGGAAATGCT...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGCACATAAGGGGATTCTaGAGGCCTGCAGTTGCATTC +
Preference number: 5 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMHIRGF*RPAVAF
Trigger: GAATGCAACTGCAGGCCTCAAGAATCCCCTTATGTG...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GGCAGAGAACCTGACTTTGCTACCTGGCATGTAAATCTAAGTCTTTCTTTTGTAAGCATTTCCTTGTTGTaGTGCCGAACCACGAAGTTA +
Preference number: 5 (lower is better)
Translates to: GREPDFATWHVNLSLSFVSISLL*CRTTKL
Trigger: TAACTTCGTGGTTCGGCACAACAACAAGGAAATGCT...TACAAAAGAAAGACTTAGATTTACATGCCAGGTAGCAAAGTCAGGTTCTCTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGTTTTCTAGTTCACTGTaGCGCTTAACCAGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMFSSSL*RLTRLV
Trigger: CACCAACCTGGTTAAGCGCAACAGTGAACTAGAAAA...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TCTTTTCACTTCCTGTGTCTTGATTGCATGTGTTTGTACATGAGGCAAGAGGGATTTGACAGCAATCATTaGTTTCCTCTGCTGGATGAT +
Preference number: 5 (lower is better)
Translates to: SFHFLCLDCMCLYMRQEGFDSNH*FPLLDD
Trigger: ATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAA...TCCCTCTTGCCTCATGTACAAACACATGCAATCAAGACACAGGAAGTGAAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGGCTTTTGACAGCAATCATTaGTTTCCTCTGCTGGATGAT +
Preference number: 5 (lower is better)
Translates to: VLPMDFSLHLIYGALMEAFDSNH*FPLLDD
Trigger: ATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAA...AGCCTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTATATGCTCAGCTTGGTaGATGAGGACTGTTGACCGC +
Preference number: 5 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVICSAW*MRTVDR
Trigger: GCGGTCAACAGTCCTCATCAACCAAGCTGAGCATAT...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp CGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGGAGATCTGCAATCCATCATaGGAGATCTTCAACTTCTTG +
Preference number: 5 (lower is better)
Translates to: RVLPMDFSLHLIYGALMEICNPS*EIFNFL
Trigger: CAAGAAGTTGAAGATCTCCAATGATGGATTGCAGAT...CTCCATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CCA 90 bp ACCTTTGTCTCTTTGATTTTGACAGCAATCATTTGTTTCCTCTGCTaGATGATCTCTACCAACTCGTCACATTCTTCCATAAGTTTTGCC +
Preference number: 5 (lower is better)
Translates to: TFVSLILTAIICFLC*MISTNSSHSSISFA
Trigger: GGCAAAACTTATGGAAGAATGTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAAATCAAAGAGACAAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp TTTCGAGTGCTTCCAATGGACTTTAGTTTGCATCTCATATATGGAGCACTAATGTTTGACAGCAATCATTaGTTTCCTCTGCTGGATGAT +
Preference number: 5 (lower is better)
Translates to: FRVLPMDFSLHLIYGALMFDSNH*FPLLDD
Trigger: ATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAA...CATTAGTGCTCCATATATGAGATGCAAACTAAAGTCCATTGGAAGCACTCGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTCAGGAAGAGGCATTCTaGCCAATCCACTCATTCTTT +
Preference number: 5 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVQEEAF*PIHSFF
Trigger: AAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCTG...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GATTCAGAACAACCTGAGAAGCTTGTCTCAAATGTAAGTTTCCTTATGTTCATAATCTGCAATCCATCATaGGAGATCTTCAACTTCTTG +
Preference number: 5 (lower is better)
Translates to: DSEQPEKLVSNVSFLMFIICNPS*EIFNFL
Trigger: CAAGAAGTTGAAGATCTCCAATGATGGATTGCAGAT...TATGAACATAAGGAAACTTACATTTGAGACAAGCTTCTCAGGTTGTTCTGAATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS-3UTR CAA 90 bp GCTGTGAAGCTCAACTTCTGTGATAAAAACGAGGATGGAATTTATGTTTTTGTTATCTGCAATCCATCATaGGAGATCTTCAACTTCTTG +
Preference number: 5 (lower is better)
Translates to: AVKLNFCDKNEDGIYVFVICNPS*EIFNFL
Trigger: CAAGAAGTTGAAGATCTCCAATGATGGATTGCAGAT...AACAAAAACATAAATTCCATCCTCGTTTTTATCACAGAAGTTGAGCTTCACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 72 bp ACTGGTTCCACCAGGCGATGGCTGGTGAAAGGTTTCTaGTTGGGGTGTGTGGCCCGAAGGCAACGGTCACAG +
Preference number: 6 (lower is better)
Translates to: TGSTRRWLVKGF*LGCVARRQRSQ
Trigger: CTGTGACCGTTGCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS TCA 72 bp GTGTGTCTGAAACTGGTTCCACCAGGCGATGGCTGGTaGAAGGTTTCTTGTTGGGGTGTGTGGCCCGAAGGC +
Preference number: 6 (lower is better)
Translates to: VCLKLVPPGDGW*KVSCWGVWPEG
Trigger: GCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS TCA 72 bp GTGGTCCAGGCAGGTAATCCCTCGAAGATGTGTGTCTaGAACTGGTTCCACCAGGCGATGGCTGGTGAAAGG +
Preference number: 6 (lower is better)
Translates to: VVQAGNPSKMCV*NWFHQAMAGER
Trigger: CCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCGAGGGATTACCTGCCTGGACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS TCA 72 bp AGGGTCACATTCCTCTTGAGGCCATCCAGGCCCCGGTaGTTCAGCGAGATAACATACCTGCATGTAGGACAC +
Preference number: 6 (lower is better)
Translates to: RVTFLLRPSRPR*FSEITYLHVGH
Trigger: GTGTCCTACATGCAGGTATGTTATCTCGCTGAATCACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS TCA 72 bp CCGGCGGCTCTCACTTGGAGAATTGGGCCCACTGACTaGAGCCTTCTGGAAGCGATCAATAATGTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: PAALTWRIGPTD*SLLEAINNVLQ
Trigger: CTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS GCA 72 bp AGCATCTCTCGGAGGGTCCTGCTCACAGAATTGACATaGAATTCTCTCACTCGACATGGCGGAGCTAGGCCT +
Preference number: 6 (lower is better)
Translates to: SISRRVLLTELT*NSLTRHGGARP
Trigger: AGGCCTAGCTCCGCCATGTCGAGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGACCCTCCGAGAGATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS CCA 72 bp CGAAGATGTGTGTCTGAAACTGGTTCCACCAGGCGATaGCTGGTGAAAGGTTTCTTGTTGGGGTGTGTGGCC +
Preference number: 6 (lower is better)
Translates to: RRCVSETGSTRR*LVKGFLLGCVA
Trigger: GGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS GCA 72 bp CTGACTGAAGCCTTCTGGAAGCGATCAATAATGTTCTaGAGGGTCACATTCCTCTTGAGGCCATCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: LTEAFWKRSIMF*RVTFLLRPSRP
Trigger: GGGCCTGGATGGCCTCAAGAGGAATGTGACCCTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS CAA 90 bp GATGCACGTCTTTACAGCATCTCTCGGAGGGTCCTGCTCACAGAATaGACATGCAATTCTCTCACTCGACATGGCGGAGCTAGGCCTGTA +
Preference number: 6 (lower is better)
Translates to: DARLYSISRRVLLTE*TCNSLTRHGGARPV
Trigger: TACAGGCCTAGCTCCGCCATGTCGAGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGACCCTCCGAGAGATGCTGTAAAGACGTGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS CAA 90 bp ACACCTAGACGCTTCAACTGTGGGGGCACATCCACCAGCATTTCCTaGTTGTTGTGCCGAACCACGAAGTTACTGTTGCATCGAGAGAAG +
Preference number: 6 (lower is better)
Translates to: TPRRFNCGGTSTSIS*LLCRTTKLLLHREK
Trigger: CTTCTCTCGATGCAACAGTAACTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGATGTGCCCCCACAGTTGAAGCGTCTAGGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp GTAGTGGCAGCCACTGTCGATGAATATATTTCCTGCTaGCCCATAACACCCTGTGCCACTAAATCTCTCCGG +
Preference number: 6 (lower is better)
Translates to: VVAATVDEYISC*PITPCATKSLR
Trigger: CCGGAGAGATTTAGTGGCACAGGGTGTTATGGGGCAGCAGGAAATATATTCATCGACAGTGGCTGCCACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp TGTGGGGGCACATCCACCAGCATTTCCTTGTTGTTGTaGCGAACCACGAAGTTACTGTTGCATCGAGAGAAG +
Preference number: 6 (lower is better)
Translates to: CGGTSTSISLLL*RTTKLLLHREK
Trigger: CTTCTCTCGATGCAACAGTAACTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGATGTGCCCCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 72 bp CTTTACAGCATCTCTCGGAGGGTCCTGCTCACAGAATaGACATGCAATTCTCTCACTCGACATGGCGGAGCT +
Preference number: 6 (lower is better)
Translates to: LYSISRRVLLTE*TCNSLTRHGGA
Trigger: AGCTCCGCCATGTCGAGTGAGAGAATTGCATGTCAATTCTGTGAGCAGGACCCTCCGAGAGATGCTGTAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
ENSMUST00000128809.2
CDS CAA 72 bp CGCTTCAACTGTGGGGGCACATCCACCAGCATTTCCTaGTTGTTGTGCCGAACCACGAAGTTACTGTTGCAT +
Preference number: 6 (lower is better)
Translates to: RFNCGGTSTSIS*LLCRTTKLLLH
Trigger: ATGCAACAGTAACTTCGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGATGTGCCCCCACAGTTGAAGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 90 bp AGCTATCCACTGAATTGTACTTGCCTCGTGGCGCACCGGCCAATCTaGAGCAGCTTACTGCTTCCTTACATTTCCTTATCTCTGGCCACA +
Preference number: 6 (lower is better)
Translates to: SYPLNCTCLVAHRPI*SSLLLPYISLSLAT
Trigger: TGTGGCCAGAGATAAGGAAATGTAAGGAAGCAGTAAGCTGCTCAAGATTGGCCGGTGCGCCACGAGGCAAGTACAATTCAGTGGATAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS TCA 72 bp CTGAAGCTCATAGGAGCTGATGCTGAATTCGTCGTCTaGGATCCAGTGGACTGTAATGGTGTCATGGGAAGC +
Preference number: 6 (lower is better)
Translates to: LKLIGADAEFVV*DPVDCNGVMGS
Trigger: GCTTCCCATGACACCATTACAGTCCACTGGATCTCAGACGACGAATTCAGCATCAGCTCCTATGAGCTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp TTTCCTTGTTGTTGTGCCGAACCACGAAGTTACTGTTaGATCGAGAGAAGACCCAGGAAGAGGCATTCTTGC +
Preference number: 6 (lower is better)
Translates to: FPCCCAEPRSYC*IERRPRKRHSC
Trigger: GCAAGAATGCCTCTTCCTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGGTTCGGCACAACAACAAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 72 bp CTGAATTGTACTTGCCTCGTGGCGCACCGGCCAATCTaGAGCAGCTTACTGCTTCCTTACATTTCCTTATCT +
Preference number: 6 (lower is better)
Translates to: LNCTCLVAHRPI*SSLLLPYISLS
Trigger: AGATAAGGAAATGTAAGGAAGCAGTAAGCTGCTCAAGATTGGCCGGTGCGCCACGAGGCAAGTACAATTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS TCA 72 bp TTTCCTTATCTCTGGCCACAGGCCCCAACTACACCATaGCTTACTGATGAAGTTAGCCTGGCCAGTGAATAT +
Preference number: 6 (lower is better)
Translates to: FPYLWPQAPTTP*LTDEVSLASEY
Trigger: ATATTCACTGGCCAGGCTAACTTCATCAGTAAGTCATGGTGTAGTTGGGGCCTGTGGCCAGAGATAAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112988.8
CDS GCA 72 bp TGCAGAAACCGTGCTTGGTCATTTTCCTTTAGGATATaGTCAGCTTGGTTGATGAGGACTGTTGACCGCTCA +
Preference number: 6 (lower is better)
Translates to: CRNRAWSFSFRI*SAWLMRTVDRS
Trigger: TGAGCGGTCAACAGTCCTCATCAACCAAGCTGAGCATATCCTAAAGGAAAATGACCAAGCACGGTTTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 72 bp ATTTCCTTGTTGTTGTGCCGAACCACGAAGTTACTGTaGCATCGAGAGAAGACCCAGGAAGAGGCATTCTTG +
Preference number: 6 (lower is better)
Translates to: ISLLLCRTTKLL*HREKTQEEAFL
Trigger: CAAGAATGCCTCTTCCTGGGTCTTCTCTCGATGCAACAGTAACTTCGTGGTTCGGCACAACAACAAGGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp ACCAACTCGTCACATTCTTCCATAAGTTTTGCCTCATaGATAGCAGTATTCACCTCAACTTGCTGGCAGATC +
Preference number: 6 (lower is better)
Translates to: TNSSHSSISFAS*IAVFTSTCWQI
Trigger: GATCTGCCAGCAAGTTGAGGTGAATACTGCTATGCATGAGGCAAAACTTATGGAAGAATGTGACGAGTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp GATCTCTACCAACTCGTCACATTCTTCCATAAGTTTTaGCTCATGCATAGCAGTATTCACCTCAACTTGCTG +
Preference number: 6 (lower is better)
Translates to: DLYQLVTFFHKF*LMHSSIHLNLL
Trigger: CAGCAAGTTGAGGTGAATACTGCTATGCATGAGGCAAAACTTATGGAAGAATGTGACGAGTTGGTAGAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CCA 72 bp GAGAGCTCTCATCCTTCTCCATCTGCAATCCATCATTaGAGATCTTCAACTTCTTGTGAGTCATTTTGGGAT +
Preference number: 6 (lower is better)
Translates to: ESSHPSPSAIHH*RSSTSCESFWD
Trigger: ATCCCAAAATGACTCACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGATGGAGAAGGATGAGAGCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS GCA 72 bp ATTAAAATTGATGTCTGGAATCAGAACTTGCGAAGATaGAGTTGCCATAGCGACCCTCTCGGCAATGTTTTT +
Preference number: 6 (lower is better)
Translates to: IKIDVWNQNLRR*SCHSDPLGNVF
Trigger: AAAAACATTGCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTGATTCCAGACATCAATTTTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 72 bp CATAACCTTTGTCTCTTTGATTTTGACAGCAATCATTaGTTTCCTCTGCTGGATGATCTCTACCAACTCGTC +
Preference number: 6 (lower is better)
Translates to: HNLCLFDFDSNH*FPLLDDLYQLV
Trigger: GACGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAAATCAAAGAGACAAAGGTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CAA 90 bp TCTCAGTTTCATAACCTTTGTCTCTTTGATTTTGACAGCAATCATTaGTTTCCTCTGCTGGATGATCTCTACCAACTCGTCACATTCTTC +
Preference number: 6 (lower is better)
Translates to: SQFHNLCLFDFDSNH*FPLLDDLYQLVTFF
Trigger: GAAGAATGTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAAATCAAAGAGACAAAGGTTATGAAACTGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2
CDS CCA 72 bp TCTTTGATTTTGACAGCAATCATTTGTTTCCTCTGCTaGATGATCTCTACCAACTCGTCACATTCTTCCATA +
Preference number: 6 (lower is better)
Translates to: SLILTAIICFLC*MISTNSSHSSI
Trigger: TATGGAAGAATGTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAATGATTGCTGTCAAAATCAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112988.8
ENSMUST00000112990.8
ENSMUST00000112993.2