Pregenerated sensors for MID1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008035Ensembl transcript IDs: ENSMUST00000008179.7, ENSMUST00000115524.8, ENSMUST00000144356.8, ENSMUST00000156321.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCAGGAGGCTGAGCCCCGCCTCCCCCAAGCACCCGGCTAGAAGCTaGCCTCCCATGTGTGGCAACCCAGCACTGTGCCCTGGCATGGCC | + |
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Preference number: 1 (lower is better) Translates to: SRRLSPASPKHPARS*PPMCGNPALCPGMA Trigger: GGCCATGCCAGGGCACAGTGCTGGGTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTGCTTGGGGGAGGCGGGGCTCAGCCTCCTGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR GCA 90 bp | CACCCGGCTAGAAGCTGCCCTCCCATGTGTGGCAACCCAGCACTGTaGCCTGGCATGGCCCTTTCTCAGGCCCTTCTCTTCCGGAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: HPARSCPPMCGNPAL*PGMALSQALLFRKE Trigger: TTCTTTCCGGAAGAGAAGGGCCTGAGAAAGGGCCATGCCAGGGCACAGTGCTGGGTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR TCA 90 bp | CCCCCAAGCACCCGGCTAGAAGCTGCCCTCCCATGTGTGGCAACCCAGCACTGTCCTCTGCTCTCGCGATaGGGCCCTCTTCTCCACACT | + |
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Preference number: 2 (lower is better) Translates to: PPSTRLEAALPCVATQHCPLLSR*GPLLHT Trigger: AGTGTGGAGAAGAGGGCCTCATCGCGAGAGCAGAGG...ACAGTGCTGGGTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTGCTTGGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR CCA 90 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTGGCGTGAAAGGGATAGGCCCAGCACTGTGCCCTaGCATGGCCCTTTCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: HIASLHTRAGEGWRERDRPSTVP*HGPFSG Trigger: GCCTGAGAAAGGGCCATGCCAGGGCACAGTGCTGGG...CCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR TCA 90 bp | AACGCCAAGGCCTCCTCTGGCAGCTCAAGGCAGGGCAGCAGGAGGCTGAGCCCCAAGAAAGGCACAGGCTaGATGAAGGACATCGGCCCA | + |
|
Preference number: 2 (lower is better) Translates to: NAKASSGSSRQGSRRLSPKKGTG*MKDIGP Trigger: TGGGCCGATGTCCTTCATTCAGCCTGTGCCTTTCTT...GGGGCTCAGCCTCCTGCTGCCCTGCCTTGAGCTGCCAGAGGAGGCCTTGGCGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR TCA 90 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTGGCGTGAAAGGGATAGGTGCAAACAGGAAAACTaGCGCAATCCTAGCAACGCC | + |
|
Preference number: 2 (lower is better) Translates to: HIASLHTRAGEGWRERDRCKQEN*RNPSNA Trigger: GGCGTTGCTAGGATTGCGTCAGTTTTCCTGTTTGCA...CCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR GCA 90 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTGGCGTGAAAGGGATAGGCAACAGTGCTGTTTGTaGGCTTATCACAATGGAATC | + |
|
Preference number: 2 (lower is better) Translates to: HIASLHTRAGEGWRERDRQQCCL*AYHNGI Trigger: GATTCCATTGTGATAAGCGCACAAACAGCACTGTTG...CCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR CCA 90 bp | ATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCCCCGAGAGAGGGTGCTaGGCAGCGGGGACAGCCCCC | + |
|
Preference number: 2 (lower is better) Translates to: IIMLIIFASRVASFILAGPERGC*AAGTAP Trigger: GGGGGCTGTCCCCGCTGCCCAGCACCCTCTCTCGGG...GCCAGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR CCA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTCCCGAGAGAGGGTGCTaGGCAGCGGGGACAGCCCCC | + |
|
Preference number: 2 (lower is better) Translates to: LIIMLIIFASRVASFILAPERGC*AAGTAP Trigger: GGGGGCTGTCCCCGCTGCCCAGCACCCTCTCTCGGG...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR CCA 90 bp | ATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCCTGCCCTCCCATGTGTaGCAACCCAGCACTGTGCCC | + |
|
Preference number: 2 (lower is better) Translates to: IIMLIIFASRVASFILAGLPSHV*QPSTVP Trigger: GGGCACAGTGCTGGGTTGCCACACATGGGAGGGCAG...GCCAGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR GCA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTCACCCGGCTAGAAGCTaGCCTCCCATGTGTGGCAAC | + |
|
Preference number: 2 (lower is better) Translates to: LIIMLIIFASRVASFILAHPARS*PPMCGN Trigger: GTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTG...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR CCA 90 bp | GTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGGGTCACTGTTACAAAAAGCCCAGCACTGTGCCCTaGCATGGCCCTTTCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: VSKQRDLKDLRQGHCYKKPSTVP*HGPFSG Trigger: GCCTGAGAAAGGGCCATGCCAGGGCACAGTGCTGGG...CTTTTTGTAACAGTGACCCTGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR TCA 90 bp | CAGAAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTAAGGCACAGGCTGAATaGAGGACATCGGCCCAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: QKIINKVVPVTNSAVCALKAQAE*RTSAQF Trigger: GAACTGGGCCGATGTCCTTCATTCAGCCTGTGCCTT...AAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR GCA 90 bp | ATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCACCGGTTACCAACAGTaGTGTTTGTGCGCTTATCAC | + |
|
Preference number: 2 (lower is better) Translates to: IIMLIIFASRVASFILAGTGYQQ*CLCAYH Trigger: GTGATAAGCGCACAAACAGCACTGTTGGTAACCGGT...GCCAGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR-3UTR TCA 90 bp | GTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGGGTCACTGTTACAAAAAGTGCAAACAGGAAAACTaGCGCAATCCTAGCAACGCC | + |
|
Preference number: 2 (lower is better) Translates to: VSKQRDLKDLRQGHCYKKCKQEN*RNPSNA Trigger: GGCGTTGCTAGGATTGCGTCAGTTTTCCTGTTTGCA...CTTTTTGTAACAGTGACCCTGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR GCA 72 bp | CTGAGCCCCGCCTCCCCCAAGCACCCGGCTAGAAGCTaGCCTCCCATGTGTGGCAACCCAGCACTGTGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: LSPASPKHPARS*PPMCGNPALCP Trigger: AGGGCACAGTGCTGGGTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTGCTTGGGGGAGGCGGGGCTCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR CCA 72 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTaGCGTGAAAGGGATAGGGTGCCACAGGACTACTGT | + |
|
Preference number: 3 (lower is better) Translates to: HIASLHTRAGEG*RERDRVPQDYC Trigger: ACAGTAGTCCTGTGGCACCCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| 3UTR CCA 72 bp | CGGTTACCAACAGTGCTGTTTGTGCGCTTATCACAATaGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: RLPTVLFVRLSQ*NRRSFKAKRSE Trigger: TTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGATAAGCGCACAAACAGCACTGTTGGTAACCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | AGGACATCGGCCCAGTTCCATTCCCACCAACACAGAGTAGGCCCCCTCCGGGGGCGTCGCGCAGCAGACTaGGCACCATCACCGTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RTSAQFHSHQHRVGPLRGRRAAD*APSPSG Trigger: ACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACG...CCCCCGGAGGGGGCCTACTCTGTGTTGGTGGGAATGGAACTGGGCCGATGTCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTGGCGTGAAAGGGATAGGCGTCGCGCAGCAGACTaGGCACCATCACCGTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: HIASLHTRAGEGWRERDRRRAAD*APSPSG Trigger: ACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACG...CCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | AACGCCAAGGCCTCCTCTGGCAGCTCAAGGCAGGGCAGCAGGAGGCTGAGCCCCGCTTGTATCTATTGGTaGGGATGTTGGCTTTTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NAKASSGSSRQGSRRLSPACIYW*GCWLFG Trigger: CCCGAAAAGCCAACATCCTCACCAATAGATACAAGC...GGGGCTCAGCCTCCTGCTGCCCTGCCTTGAGCTGCCAGAGGAGGCCTTGGCGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR GCA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGCCTTGGGCTTCCAGGTaGTCTCCTCGCTCCCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVPWASR*SPRSRP Trigger: CGGCCGGGAGCGAGGAGAGCACCTGGAAGCCCAAGG...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR GCA 90 bp | AACGCCAAGGCCTCCTCTGGCAGCTCAAGGCAGGGCAGCAGGAGGCTGAGCCCCGCGTTAAAGAGCGAGTaGTTCTGGTTATATGTGTCG | + |
|
Preference number: 4 (lower is better) Translates to: NAKASSGSSRQGSRRLSPALKSE*FWLYVS Trigger: CGACACATATAACCAGAAGCACTCGCTCTTTAACGC...GGGGCTCAGCCTCCTGCTGCCCTGCCTTGAGCTGCCAGAGGAGGCCTTGGCGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGTCCGCGCTCTCCAAGTaGCTCAGGCCCACCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVSALSK*LRPTRM Trigger: CATCCTGGTGGGCCTGAGTCACTTGGAGAGCGCGGA...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR GCA 90 bp | CCCCCAAGCACCCGGCTAGAAGCTGCCCTCCCATGTGTGGCAACCCAGCACTGTCTGAAGCCGATCTCCTaGTTGTATCTATTGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PPSTRLEAALPCVATQHCLKPIS*LYLLVR Trigger: CCTCACCAATAGATACAAGCAGGAGATCGGCTTCAG...ACAGTGCTGGGTTGCCACACATGGGAGGGCAGCTTCTAGCCGGGTGCTTGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGCATTGCGGATGGACTTaGGCAGCACGTAGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVHCGWT*AARSGC Trigger: ACAGCCACTACGTGCTGCTCAAGTCCATCCGCAATG...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR GCA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTCCTTGGGCTTCCAGGTaGTCTCCTCGCTCCCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: LIIMLIIFASRVASFILAPWASR*SPRSRP Trigger: CGGCCGGGAGCGAGGAGAGCACCTGGAAGCCCAAGG...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | AAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTATCTCCGCGCTCTCCAAGTaGCTCAGGCCCACCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: KIINKVVPVTNSAVCALISALSK*LRPTRM Trigger: CATCCTGGTGGGCCTGAGTCACTTGGAGAGCGCGGA...GATAAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | ATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCCCACCAGGATGTCCTTaGGCTTCCAGGTGCTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IIMLIIFASRVASFILAGPPGCP*ASRCSP Trigger: AGGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGG...GCCAGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCACCATCACCGTCTaGTCCATGTTGTTCACCGCG | + |
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Preference number: 4 (lower is better) Translates to: LIIMLIIFASRVASFILAGTITV*SMLFTA Trigger: CGCGGTGAACAACATGGACCAGACGGTGATGGTGCC...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | TCACAATGGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGGCACCATCACCGTCTaGTCCATGTTGTTCACCGCG | + |
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Preference number: 4 (lower is better) Translates to: SQWNRRSFKAKRSERLKTGTITV*SMLFTA Trigger: CGCGGTGAACAACATGGACCAGACGGTGATGGTGCC...TGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | AAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTATCCCACCAGGATGTCCTTaGGCTTCCAGGTGCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KIINKVVPVTNSAVCALIPPGCP*ASRCSP Trigger: AGGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGG...GATAAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | CAGAAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTAGTGGCCCCAATTACTaGAGCCGATCTCCTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QKIINKVVPVTNSAVCALSGPNY*SRSPAC Trigger: ACAAGCAGGAGATCGGCTTCAGTAATTGGGGCCACT...AAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | TCACAATGGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAAGTGGCCCCAATTACTaGAGCCGATCTCCTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SQWNRRSFKAKRSERLKTSGPNY*SRSPAC Trigger: ACAAGCAGGAGATCGGCTTCAGTAATTGGGGCCACT...TGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR TCA 90 bp | TCACAATGGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGCTTGTATCTATTGGTaGGGATGTTGGCTTTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: SQWNRRSFKAKRSERLKTACIYW*GCWLFG Trigger: CCCGAAAAGCCAACATCCTCACCAATAGATACAAGC...TGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CCA 90 bp | ATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTGGCAAGAGCGAGTGCTTCTaGTTATATGTGTCGCAGATT | + |
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Preference number: 4 (lower is better) Translates to: IIMLIIFASRVASFILAGKSECF*LYVSQI Trigger: AATCTGCGACACATATAACCAGAAGCACTCGCTCTT...GCCAGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR GCA 90 bp | AAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTATCGCGTTAAAGAGCGAGTaGTTCTGGTTATATGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: KIINKVVPVTNSAVCALIALKSE*FWLYVS Trigger: CGACACATATAACCAGAAGCACTCGCTCTTTAACGC...GATAAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 90 bp | GTCCCGGGAGGGCGCGAAAAAGCTTTCATTGGCGCTGCCCGGGCTTaGGGCCGGGGTCGTGCGCTCCTCCAGGCAGCCGCCACTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: VPGGREKAFIGAARA*GRGRALLQAAATAA Trigger: GGCGGCAGTGGCGGCTGCCTGGAGGAGCGCACGACCCCGGCCCCAAGCCCGGGCAGCGCCAATGAAAGCTTTTTCGCGCCCTCCCGGGAC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS TCA 90 bp | TCGTGCGCTCCTCCAGGCAGCCGCCACTGCCGCCTACCTCCACGCTaGCCTCGTCTATCTCCGGCTCGGACAGGGGTACGTCGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SCAPPGSRHCRLPPR*PRLSPARTGVRRAA Trigger: TGCTGCGCGACGTACCCCTGTCCGAGCCGGAGATAGACGAGGTCAGCGTGGAGGTAGGCGGCAGTGGCGGCTGCCTGGAGGAGCGCACGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 90 bp | CCGCATCCGCGCTCTCCAAGTGACTCAGGCCCACCAGGATGTCCTTaGGCTTCCAGGTGCTCTCCTCGCTCCCGGCCGGCGGAGACGAAG | + |
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Preference number: 5 (lower is better) Translates to: PHPRSPSDSGPPGCP*ASRCSPRSRPAETK Trigger: CTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGGGCCTGAGTCACTTGGAGAGCGCGGATGCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS GCA 90 bp | TCTCCAAGTGACTCAGGCCCACCAGGATGTCCTTGGGCTTCCAGGTaGTCTCCTCGCTCCCGGCCGGCGGAGACGAAGGCTGGTGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: SPSDSGPPGCPWASR*SPRSRPAETKAGAG Trigger: TCCTGCACCAGCCTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGGGCCTGAGTCACTTGGAGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 90 bp | GGCTTCCAGGTGCTCTCCTCGCTCCCGGCCGGCGGAGACGAAGGCTaGTGCAGGACTCCCCACTCGATATCATTGCGGATGGACTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GFQVLSSLPAGGDEG*CRTPHSISLRMDLS Trigger: GCTCAAGTCCATCCGCAATGATATCGAGTGGGGAGTCCTGCACCAGCCTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCACCTGGAAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS GCA 90 bp | TTCCAGGTGCTCTCCTCGCTCCCGGCCGGCGGAGACGAAGGCTGGTaGAGGACTCCCCACTCGATATCATTGCGGATGGACTTGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: FQVLSSLPAGGDEGW*RTPHSISLRMDLSS Trigger: GCTGCTCAAGTCCATCCGCAATGATATCGAGTGGGGAGTCCTGCACCAGCCTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCACCTGGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS TCA 90 bp | AACTGCTGCTCCAGATCTTCCTCGCCCGCATCCGCGCTCTCCAAGTaGCTCAGGCCCACCAGGATGTCCTTGGGCTTCCAGGTGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: NCCSRSSSPASALSK*LRPTRMSLGFQVLS Trigger: GGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGGGCCTGAGTCACTTGGAGAGCGCGGATGCGGGCGAGGAAGATCTGGAGCAGCAGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | CACATCGCCAGTTTACACACACGGGCGGGGGAGGGGTGGCGTGAAAGGGATAGGGCTTTTCGGGTGAGTTaGGAGAGCACGGTGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: HIASLHTRAGEGWRERDRAFRVS*ESTVCS Trigger: GCTGCACACCGTGCTCTCCAAACTCACCCGAAAAGC...CCTATCCCTTTCACGCCACCCCTCCCCCGCCCGTGTGTGTAAACTGGCGATGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | AACGCCAAGGCCTCCTCTGGCAGCTCAAGGCAGGGCAGCAGGAGGCTGAGCCCCCTATTGGTGAGGATGTaGGCTTTTCGGGTGAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: NAKASSGSSRQGSRRLSPLLVRM*AFRVSL Trigger: CAAACTCACCCGAAAAGCCAACATCCTCACCAATAG...GGGGCTCAGCCTCCTGCTGCCCTGCCTTGAGCTGCCAGAGGAGGCCTTGGCGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 90 bp | TCGGACAGGGGTACGTCGCGCAGCAGACTGGGCACCATCACCGTCTaGTCCATGTTGTTCACCGCGCCAATGAAGCGATTCATGGCGTTA | + |
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Preference number: 5 (lower is better) Translates to: SDRGTSRSRLGTITV*SMLFTAPMKRFMAL Trigger: TAACGCCATGAATCGCTTCATTGGCGCGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACGTACCCCTGTCCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 ENSMUST00000144356.8 ENSMUST00000156321.2 |
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| CDS TCA 90 bp | AAGGCTGGTGCAGGACTCCCCACTCGATATCATTGCGGATGGACTTaGGCAGCACGTAGTGGCTGTACATGTCCCGGGAGGGCGCGAAAA | + |
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Preference number: 5 (lower is better) Translates to: KAGAGLPTRYHCGWT*AARSGCTCPGRARK Trigger: TTTTCGCGCCCTCCCGGGACATGTACAGCCACTACGTGCTGCTCAAGTCCATCCGCAATGATATCGAGTGGGGAGTCCTGCACCAGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGCCCACCAGGATGTCCTaGGGCTTCCAGGTGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVPTRMS*GFQVLS Trigger: GGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGGG...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | AACGCCAAGGCCTCCTCTGGCAGCTCAAGGCAGGGCAGCAGGAGGCTGAGCCCCTCCTGCTTGTATCTATaGGTGAGGATGTTGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: NAKASSGSSRQGSRRLSPSCLYL*VRMLAF Trigger: AAAAGCCAACATCCTCACCAATAGATACAAGCAGGA...GGGGCTCAGCCTCCTGCTGCCCTGCCTTGAGCTGCCAGAGGAGGCCTTGGCGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGGCTTTTCGGGTGAGTTaGGAGAGCACGGTGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVAFRVS*ESTVCS Trigger: GCTGCACACCGTGCTCTCCAAACTCACCCGAAAAGC...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | GGCCCTCTTCTCCACACTAACCCCACCAAGTACACAGCCCAACTTTACAGTGTGCCCCACTCGATATCATaGCGGATGGACTTGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GPLLHTNPTKYTAQLYSVPHSIS*RMDLSS Trigger: GCTGCTCAAGTCCATCCGCAATGATATCGAGTGGGG...CACACTGTAAAGTTGGGCTGTGTACTTGGTGGGGTTAGTGTGGAGAAGAGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | GTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGGGTCACTGTTACAAAAAGACCGTCTGGTCCATGTaGTTCACCGCGCCAATGAAG | + |
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Preference number: 5 (lower is better) Translates to: VSKQRDLKDLRQGHCYKKTVWSM*FTAPMK Trigger: CTTCATTGGCGCGGTGAACAACATGGACCAGACGGT...CTTTTTGTAACAGTGACCCTGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | AAAATCATTAATAAAGTAGTACCGGTTACCAACAGTGCTGTTTGTGCGCTTATCACCGTCTGGTCCATGTaGTTCACCGCGCCAATGAAG | + |
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Preference number: 5 (lower is better) Translates to: KIINKVVPVTNSAVCALITVWSM*FTAPMK Trigger: CTTCATTGGCGCGGTGAACAACATGGACCAGACGGT...GATAAGCGCACAAACAGCACTGTTGGTAACCGGTACTACTTTATTAATGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | TCACAATGGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACACCCCACTCGATATCATaGCGGATGGACTTGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SQWNRRSFKAKRSERLKTPHSIS*RMDLSS Trigger: GCTGCTCAAGTCCATCCGCAATGATATCGAGTGGGG...TGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTCTATTGGTGAGGATGTaGGCTTTTCGGGTGAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: LIIMLIIFASRVASFILALLVRM*AFRVSL Trigger: CAAACTCACCCGAAAAGCCAACATCCTCACCAATAG...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | CTCATAATAATGTTAATTATTTTCGCTAGCCGAGTGGCAAGCTTCATCCTAGCTAAGCCGATCTCCTGCTaGTATCTATTGGTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: LIIMLIIFASRVASFILAKPISC*YLLVRM Trigger: CATCCTCACCAATAGATACAAGCAGGAGATCGGCTT...AGCTAGGATGAAGCTTGCCACTCGGCTAGCGAAAATAATTAACATTATTATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | TCACAATGGAATCGACGAAGTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAAAGCCGATCTCCTGCTaGTATCTATTGGTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: SQWNRRSFKAKRSERLKTKPISC*YLLVRM Trigger: CATCCTCACCAATAGATACAAGCAGGAGATCGGCTT...TGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAACTTCGTCGATTCCATTGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS-3UTR CAA 90 bp | GTTTCAAAGCAAAGAGATCTGAAAGACTTAAGACAGGGTCACTGTTACAAAAAGTCCTGCTTGTATCTATaGGTGAGGATGTTGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: VSKQRDLKDLRQGHCYKKSCLYL*VRMLAF Trigger: AAAAGCCAACATCCTCACCAATAGATACAAGCAGGA...CTTTTTGTAACAGTGACCCTGTCTTAAGTCTTTCAGATCTCTTTGCTTTGAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 72 bp | GGGCGCGAAAAAGCTTTCATTGGCGCTGCCCGGGCTTaGGGCCGGGGTCGTGCGCTCCTCCAGGCAGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: GREKAFIGAARA*GRGRALLQAAA Trigger: GGCGGCTGCCTGGAGGAGCGCACGACCCCGGCCCCAAGCCCGGGCAGCGCCAATGAAAGCTTTTTCGCGCCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS TCA 72 bp | CCTCCAGGCAGCCGCCACTGCCGCCTACCTCCACGCTaGCCTCGTCTATCTCCGGCTCGGACAGGGGTACGT | + |
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Preference number: 6 (lower is better) Translates to: PPGSRHCRLPPR*PRLSPARTGVR Trigger: ACGTACCCCTGTCCGAGCCGGAGATAGACGAGGTCAGCGTGGAGGTAGGCGGCAGTGGCGGCTGCCTGGAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS GCA 72 bp | GACTCAGGCCCACCAGGATGTCCTTGGGCTTCCAGGTaGTCTCCTCGCTCCCGGCCGGCGGAGACGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: DSGPPGCPWASR*SPRSRPAETKA Trigger: AGCCTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCACCTGGAAGCCCAAGGACATCCTGGTGGGCCTGAGTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 72 bp | GTGCTCTCCTCGCTCCCGGCCGGCGGAGACGAAGGCTaGTGCAGGACTCCCCACTCGATATCATTGCGGATG | + |
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Preference number: 6 (lower is better) Translates to: VLSSLPAGGDEG*CRTPHSISLRM Trigger: CATCCGCAATGATATCGAGTGGGGAGTCCTGCACCAGCCTTCGTCTCCGCCGGCCGGGAGCGAGGAGAGCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CCA 72 bp | TCTCCGGCTCGGACAGGGGTACGTCGCGCAGCAGACTaGGCACCATCACCGTCTGGTCCATGTTGTTCACCG | + |
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Preference number: 6 (lower is better) Translates to: SPARTGVRRAAD*APSPSGPCCSP Trigger: CGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACGTACCCCTGTCCGAGCCGGAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 ENSMUST00000144356.8 ENSMUST00000156321.2 |
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| CDS CCA 72 bp | GGTACGTCGCGCAGCAGACTGGGCACCATCACCGTCTaGTCCATGTTGTTCACCGCGCCAATGAAGCGATTC | + |
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Preference number: 6 (lower is better) Translates to: GTSRSRLGTITV*SMLFTAPMKRF Trigger: GAATCGCTTCATTGGCGCGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACGTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 ENSMUST00000144356.8 ENSMUST00000156321.2 |
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| CDS CAA 90 bp | GGTACGTCGCGCAGCAGACTGGGCACCATCACCGTCTGGTCCATGTaGTTCACCGCGCCAATGAAGCGATTCATGGCGTTAAAGAGCGAG | + |
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Preference number: 6 (lower is better) Translates to: GTSRSRLGTITVWSM*FTAPMKRFMALKSE Trigger: CTCGCTCTTTAACGCCATGAATCGCTTCATTGGCGCGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACGTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 ENSMUST00000144356.8 ENSMUST00000156321.2 |
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| CDS TCA 72 bp | GCAGGACTCCCCACTCGATATCATTGCGGATGGACTTaGGCAGCACGTAGTGGCTGTACATGTCCCGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: AGLPTRYHCGWT*AARSGCTCPGR Trigger: CCTCCCGGGACATGTACAGCCACTACGTGCTGCTCAAGTCCATCCGCAATGATATCGAGTGGGGAGTCCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CAA 72 bp | CGCAGCAGACTGGGCACCATCACCGTCTGGTCCATGTaGTTCACCGCGCCAATGAAGCGATTCATGGCGTTA | + |
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Preference number: 6 (lower is better) Translates to: RSRLGTITVWSM*FTAPMKRFMAL Trigger: TAACGCCATGAATCGCTTCATTGGCGCGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 ENSMUST00000144356.8 ENSMUST00000156321.2 |
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| CDS CAA 90 bp | CAATTACTGAAGCCGATCTCCTGCTTGTATCTATTGGTGAGGATGTaGGCTTTTCGGGTGAGTTTGGAGAGCACGGTGTGCAGCCCGCGC | + |
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Preference number: 6 (lower is better) Translates to: QLLKPISCLYLLVRM*AFRVSLESTVCSPR Trigger: GCGCGGGCTGCACACCGTGCTCTCCAAACTCACCCGAAAAGCCAACATCCTCACCAATAGATACAAGCAGGAGATCGGCTTCAGTAATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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| CDS CAA 72 bp | AAGCCGATCTCCTGCTTGTATCTATTGGTGAGGATGTaGGCTTTTCGGGTGAGTTTGGAGAGCACGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: KPISCLYLLVRM*AFRVSLESTVC Trigger: GCACACCGTGCTCTCCAAACTCACCCGAAAAGCCAACATCCTCACCAATAGATACAAGCAGGAGATCGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008179.7 ENSMUST00000115524.8 |
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