RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MICU3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039478

Ensembl transcript IDs: ENSMUST00000068999.14, ENSMUST00000136835.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTAAATTTCATAGCATTTCACGTTCCCTTCATTTTCTGCGTGCTCTaGCCTTACATTTGGATCCACTCAAAATCTTGCTCCTTGCCTGGT +
Preference number: 1 (lower is better)
Translates to: VNFIAFHVPFIFCVL*PYIWIHSKSCSLPG
Trigger: ACCAGGCAAGGAGCAAGATTTTGAGTGGATCCAAATGTAAGGTCAGAGCACGCAGAAAATGAAGGGAACGTGAAATGCTATGAAATTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR TCA 90 bp AACAATTTAAGGGCCCAGGACAAATCTGAAGCAATATTCACTGTATaGAAACACGCTCACAGTGCAAACCTGAAGAAAATGTGTTTCCAT +
Preference number: 1 (lower is better)
Translates to: NNLRAQDKSEAIFTV*KHAHSANLKKMCFH
Trigger: ATGGAAACACATTTTCTTCAGGTTTGCACTGTGAGCGTGTTTTCATACAGTGAATATTGCTTCAGATTTGTCCTGGGCCCTTAAATTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR TCA 90 bp TGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGCGGCCCAGGACAAATCTaGAGCAATATTCACTGTATG +
Preference number: 2 (lower is better)
Translates to: WQGSSKLPRWLEFAQQPGGPGQI*SNIHCM
Trigger: CATACAGTGAATATTGCTTCAGATTTGTCCTGGGCC...GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 90 bp GTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTaGAGTTTGCACAACAGCCAGGCAGACTTTGAGGTGACCCATGCT +
Preference number: 2 (lower is better)
Translates to: VVFIFGRVLLSCQDG*SLHNSQADFEVTHA
Trigger: AGCATGGGTCACCTCAAAGTCTGCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCAAAGATAAAAACCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CCA 90 bp CCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATGCAGTGTGTACTACGTGCTTGCAGCAAGTTTTCTCTaGTGGTGCCCAGGCTCAACG +
Preference number: 2 (lower is better)
Translates to: PMQKQSNGWSVCSVYYVLAASFL*WCPGST
Trigger: CGTTGAGCCTGGGCACCACCAGAGAAAACTTGCTGC...AAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 90 bp AGCATTTCACGTTCCCTTCATTTTCTGCGTGCTCTGACCTTACATTaGGATCCACTCAAAATCTTGCTCCTTGCCTGGTCACATAGGACA +
Preference number: 2 (lower is better)
Translates to: SISRSLHFLRALTLH*DPLKILLLAWSHRT
Trigger: TGTCCTATGTGACCAGGCAAGGAGCAAGATTTTGAGTGGATCCAAATGTAAGGTCAGAGCACGCAGAAAATGAAGGGAACGTGAAATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR GCA 90 bp AGGCAAACCCTCTGCACTAAGCTACGTACTTTCCCAGTGGTTTTTATCTTTGGCCCTTCATTTTCTGCGTaGTCTGACCTTACATTTGGA +
Preference number: 2 (lower is better)
Translates to: RQTLCTKLRTFPVVFIFGPSFSA*SDLTFG
Trigger: TCCAAATGTAAGGTCAGAGCACGCAGAAAATGAAGG...GCCAAAGATAAAAACCACTGGGAAAGTACGTAGCTTAGTGCAGAGGGTTTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR GCA 90 bp AGGCAAACCCTCTGCACTAAGCTACGTACTTTCCCAGTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTTaGCAAGATGGCTTGAGTTTG +
Preference number: 2 (lower is better)
Translates to: RQTLCTKLRTFPVVFIFGRVLLS*QDGLSL
Trigger: CAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCT...GCCAAAGATAAAAACCACTGGGAAAGTACGTAGCTTAGTGCAGAGGGTTTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CCA 90 bp CGTACTTTCCCAGTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTTGCCAAGATGAAATCCCAGGGTGGTaGTTACTAACATCAGTACAT +
Preference number: 2 (lower is better)
Translates to: RTFPVVFIFGRVLLSCQDEIPGW*LLTSVH
Trigger: ATGTACTGATGTTAGTAACCACCACCCTGGGATTTC...ATCTTGGCAACTTAGAAGAACCCTGCCAAAGATAAAAACCACTGGGAAAGTACG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CCA 90 bp CCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATGCAGTGTGTACTACGTGCTTTCACTACTGACTGATTaGATCAATTTTGAACGTGGT +
Preference number: 2 (lower is better)
Translates to: PMQKQSNGWSVCSVYYVLSLLTD*INFERG
Trigger: ACCACGTTCAAAATTGATCCAATCAGTCAGTAGTGA...AAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CCA 90 bp CTCTCTTGCCTTCCCTTTCTTTTTCAGAGTTGGGAATTAAACCTAAGGCCTCATAGTGGTTTTTATCTTTaGCAGGGTTCTTCTAAGTTG +
Preference number: 2 (lower is better)
Translates to: LSCLPFLFQSWELNLRPHSGFYL*QGSSKL
Trigger: CAACTTAGAAGAACCCTGCCAAAGATAAAAACCACT...ATGAGGCCTTAGGTTTAATTCCCAACTCTGAAAAAGAAAGGGAAGGCAAGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR TCA 90 bp GGATTACATACCAATGATTCATCACTACTGACTGATTGGATCAATTTTGAACGTCTCACAGTGCAAACCTaGAGAAAATGTGTTTCCATC +
Preference number: 2 (lower is better)
Translates to: GLHTNDSSLLTDWINFERLTVQT*RKCVSI
Trigger: GATGGAAACACATTTTCTTCAGGTTTGCACTGTGAG...ACGTTCAAAATTGATCCAATCAGTCAGTAGTGATGAATCATTGGTATGTAATCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR TCA 90 bp GGATTACATACCAATGATTCATCACTACTGACTGATTGGATCAATTTTGAACGTACTAACATCAGTACATaGCTGCTGTGTTTTCGTAAA +
Preference number: 2 (lower is better)
Translates to: GLHTNDSSLLTDWINFERTNIST*LLCFRK
Trigger: TTTACGAAAACACAGCAGTCATGTACTGATGTTAGT...ACGTTCAAAATTGATCCAATCAGTCAGTAGTGATGAATCATTGGTATGTAATCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR TCA 72 bp AGATGGCTTGAGTTTGCACAACAGCCAGGCAGACTTTaGGGTGACCCATGCTGGCCAGTCTCTCAAGTGGGG +
Preference number: 3 (lower is better)
Translates to: RWLEFAQQPGRL*GDPCWPVSQVG
Trigger: CCCCACTTGAGAGACTGGCCAGCATGGGTCACCTCAAAGTCTGCCTGGCTGTTGTGCAAACTCAAGCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CAA 90 bp TGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGCGATGCAGTTTTCCTGTaGGACGCTGACAAACTCCAT +
Preference number: 3 (lower is better)
Translates to: WQGSSKLPRWLEFAQQPGDAVFL*DADKLH
Trigger: ATGGAGTTTGTCAGCGTCCAACAGGAAAACTGCATC...GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR TCA 72 bp ACTAGACAGTCATTGGGACTACCGAGGTGTAGGGAATaGAGAAGTTCAGAGCAGCCGGTCACTGCTCTGAAA +
Preference number: 3 (lower is better)
Translates to: TRQSLGLPRCRE*RSSEQPVTALK
Trigger: TTTCAGAGCAGTGACCGGCTGCTCTGAACTTCTTCATTCCCTACACCTCGGTAGTCCCAATGACTGTCTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CAA 90 bp TGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGCGCTCTGACCTTACATTaGGATCCACTCAAAATCTTG +
Preference number: 3 (lower is better)
Translates to: WQGSSKLPRWLEFAQQPGALTLH*DPLKIL
Trigger: CAAGATTTTGAGTGGATCCAAATGTAAGGTCAGAGC...GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CAA 90 bp AGGCAAACCCTCTGCACTAAGCTACGTACTTTCCCAGTGGTTTTTATCTTTGGCGATCCACTCAAAATCTaGCTCCTTGCCTGGTCACAT +
Preference number: 3 (lower is better)
Translates to: RQTLCTKLRTFPVVFIFGDPLKI*LLAWSH
Trigger: ATGTGACCAGGCAAGGAGCAAGATTTTGAGTGGATC...GCCAAAGATAAAAACCACTGGGAAAGTACGTAGCTTAGTGCAGAGGGTTTGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR GCA 72 bp TCTTTTTCAGAGTTGGGAATTAAACCTAAGGCCTCATaGACGGCAGGCAAACCCTCTGCACTAAGCTACGTA +
Preference number: 3 (lower is better)
Translates to: SFSELGIKPKAS*TAGKPSALSYV
Trigger: TACGTAGCTTAGTGCAGAGGGTTTGCCTGCCGTGCATGAGGCCTTAGGTTTAATTCCCAACTCTGAAAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CCA 72 bp CATATGTCACACCTGCGACTAGAAATCCCAGGGTGGTaGTTACTAACATCAGTACATGACTGCTGTGTTTTC +
Preference number: 3 (lower is better)
Translates to: HMSHLRLEIPGW*LLTSVHDCCVF
Trigger: GAAAACACAGCAGTCATGTACTGATGTTAGTAACCACCACCCTGGGATTTCTAGTCGCAGGTGTGACATATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR TCA 72 bp AGGGCCCAGGACAAATCTGAAGCAATATTCACTGTATaGAAACACGCTCACAGTGCAAACCTGAAGAAAATG +
Preference number: 3 (lower is better)
Translates to: RAQDKSEAIFTV*KHAHSANLKKM
Trigger: CATTTTCTTCAGGTTTGCACTGTGAGCGTGTTTTCATACAGTGAATATTGCTTCAGATTTGTCCTGGGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR-3UTR CAA 90 bp CTCTCTTGCCTTCCCTTTCTTTTTCAGAGTTGGGAATTAAACCTAAGGCCTCATGAATCTCTGTTGGCTTaGGTACAAAAACAAAACACA +
Preference number: 3 (lower is better)
Translates to: LSCLPFLFQSWELNLRPHESLLA*VQKQNT
Trigger: TGTGTTTTGTTTTTGTACCAAAGCCAACAGAGATTC...ATGAGGCCTTAGGTTTAATTCCCAACTCTGAAAAAGAAAGGGAAGGCAAGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR GCA 72 bp TTTCCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATaGAGTGTGTACTACGTGCTTCTTACAAAAGAAGAT +
Preference number: 3 (lower is better)
Translates to: FPMQKQSNGWSV*SVYYVLLTKED
Trigger: ATCTTCTTTTGTAAGAAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR TCA 72 bp GATGTAATGGATTACATACCAATGATTCATCACTACTaGCTGATTGGATCAATTTTGAACGTGGTCCTTTTT +
Preference number: 3 (lower is better)
Translates to: DVMDYIPMIHHY*LIGSILNVVLF
Trigger: AAAAAGGACCACGTTCAAAATTGATCCAATCAGTCAGTAGTGATGAATCATTGGTATGTAATCCATTACATC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 72 bp GGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTaGCACAACAGCCAGGCAGACTTTGAGGTGACCCAT +
Preference number: 4 (lower is better)
Translates to: GRVLLSCQDGLS*HNSQADFEVTH
Trigger: ATGGGTCACCTCAAAGTCTGCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR TCA 90 bp TGTTTGCAGCAAGTTTTCTCTGGTGGTGCCCAGGCTCAACGCCAGCTAATGCTTTTTTCAGGCAGGATTTaGAGGTCGGATACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: CLQQVFSGGAQAQRQLMLFSGRI*RSDTSG
Trigger: TCCAGAAGTATCCGACCTTCAAATCCTGCCTGAAAA...AAGCATTAGCTGGCGTTGAGCCTGGGCACCACCAGAGAAAACTTGCTGCAAACA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR CCA 90 bp TGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGCCCCCGGAACCCTCTATaGAGTCTGTCTTTCATAATT +
Preference number: 4 (lower is better)
Translates to: WQGSSKLPRWLEFAQQPGPRNPL*SLSFII
Trigger: AATTATGAAAGACAGACTCCATAGAGGGTTCCGGGG...GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 72 bp ATCTTTGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTaGAGTTTGCACAACAGCCAGGCAGACTTTGAGGTG +
Preference number: 4 (lower is better)
Translates to: IFGRVLLSCQDG*SLHNSQADFEV
Trigger: CACCTCAAAGTCTGCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 72 bp CCCAGTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTaGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: PSGFYLWQGSSK*PRWLEFAQQPG
Trigger: GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCAAAGATAAAAACCACTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR CCA 90 bp TGGCAGGGTTCTTCTAAGTTGCCAAGATGGCTTGAGTTTGCACAACAGCCAGGCTACCGCAGGAGAATATaGGCAAAATCTTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: WQGSSKLPRWLEFAQQPGYRRRI*AKSSSL
Trigger: CAGTGAAGAAGATTTTGCCCATATTCTCCTGCGGTA...GCCTGGCTGTTGTGCAAACTCAAGCCATCTTGGCAACTTAGAAGAACCCTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
3UTR CAA 72 bp CGTTCCCTTCATTTTCTGCGTGCTCTGACCTTACATTaGGATCCACTCAAAATCTTGCTCCTTGCCTGGTCA +
Preference number: 4 (lower is better)
Translates to: RSLHFLRALTLH*DPLKILLLAWS
Trigger: TGACCAGGCAAGGAGCAAGATTTTGAGTGGATCCAAATGTAAGGTCAGAGCACGCAGAAAATGAAGGGAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR TCA 90 bp CGTACTTTCCCAGTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTTGCCAAGATCTGCTACTAAGCTTGTaGTGTCATCAGCACGCTCTG +
Preference number: 4 (lower is better)
Translates to: RTFPVVFIFGRVLLSCQDLLLSL*CHQHAL
Trigger: CAGAGCGTGCTGATGACATCACAAGCTTAGTAGCAG...ATCTTGGCAACTTAGAAGAACCCTGCCAAAGATAAAAACCACTGGGAAAGTACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR CCA 90 bp CGTACTTTCCCAGTGGTTTTTATCTTTGGCAGGGTTCTTCTAAGTTGCCAAGATTATCCCAGTAGCTTCTaGAGACAAGTTCCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: RTFPVVFIFGRVLLSCQDYPSSF*RQVPQH
Trigger: ATGCTGGGGAACTTGTCTCCAGAAGCTACTGGGATA...ATCTTGGCAACTTAGAAGAACCCTGCCAAAGATAAAAACCACTGGGAAAGTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR TCA 90 bp CCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATGCAGTGTGTACTACGTGCTTGTTCACCAAATGTGGTaGAAGTTTCAGTCCAGTAGC +
Preference number: 4 (lower is better)
Translates to: PMQKQSNGWSVCSVYYVLVHQMW*KFQSSS
Trigger: GCTACTGGACTGAAACTTTCACCACATTTGGTGAAC...AAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR GCA 90 bp GGATTACATACCAATGATTCATCACTACTGACTGATTGGATCAATTTTGAACGTTCCTATAGAGCGGCTTaGAAAGTTATACATGTTGAG +
Preference number: 4 (lower is better)
Translates to: GLHTNDSSLLTDWINFERSYRAA*KVIHVE
Trigger: CTCAACATGTATAACTTTGCAAGCCGCTCTATAGGA...ACGTTCAAAATTGATCCAATCAGTCAGTAGTGATGAATCATTGGTATGTAATCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS GCA 90 bp TGTCATCAGCACGCTCTGCGAGGTCTGAGAAGAGCGCCTGGCTTGTaGTACGTCTCAGGGTATCCCAGTAGCTTCTGGAGACAAGTTCCC +
Preference number: 5 (lower is better)
Translates to: CHQHALRGLRRAPGL*YVSGYPSSFWRQVP
Trigger: GGGAACTTGTCTCCAGAAGCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTCGCAGAGCGTGCTGATGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS-3UTR CAA 90 bp TGTTTGCAGCAAGTTTTCTCTGGTGGTGCCCAGGCTCAACGCCAGCTAATGCTTGCAAAGTTATACATGTaGAGAGCTATTGCAAAGTCT +
Preference number: 5 (lower is better)
Translates to: CLQQVFSGGAQAQRQLMLAKLYM*RAIAKS
Trigger: AGACTTTGCAATAGCTCTCAACATGTATAACTTTGC...AAGCATTAGCTGGCGTTGAGCCTGGGCACCACCAGAGAAAACTTGCTGCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR CAA 90 bp CCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATGCAGTGTGTACTACGTGCTTTTTTTCAGGCAGGATTaGAAGGTCGGATACTTCTGG +
Preference number: 5 (lower is better)
Translates to: PMQKQSNGWSVCSVYYVLFFRQD*KVGYFW
Trigger: CCAGAAGTATCCGACCTTCAAATCCTGCCTGAAAAA...AAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGG
43% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS-3UTR CAA 90 bp CCTATGCAAAAGCAAAGTAATGGTTGGAGTGTATGCAGTGTGTACTACGTGCTTACGTTTAAATTCATCTaGTCCTATAGAGCGGCTTGC +
Preference number: 5 (lower is better)
Translates to: PMQKQSNGWSVCSVYYVLTFKFI*SYRAAC
Trigger: GCAAGCCGCTCTATAGGACAAGATGAATTTAAACGT...AAGCACGTAGTACACACTGCATACACTCCAACCATTACTTTGCTTTTGCATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136835.2
CDS TCA 90 bp TTTGTCAACATCAAAAATCTTGAAGACAGTGTTCACCAAATGTGGTaGAAGTTTCAGTCCAGTAGCTACGTATACAGCACGTTTAAATTC +
Preference number: 5 (lower is better)
Translates to: FVNIKNLEDSVHQMW*KFQSSSYVYSTFKF
Trigger: GAATTTAAACGTGCTGTATACGTAGCTACTGGACTGAAACTTTCACCACATTTGGTGAACACTGTCTTCAAGATTTTTGATGTTGACAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS CAA 72 bp CAGCACGCTCTGCGAGGTCTGAGAAGAGCGCCTGGCTaGTGCTACGTCTCAGGGTATCCCAGTAGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: QHALRGLRRAPG*CYVSGYPSSFW
Trigger: CCAGAAGCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTCGCAGAGCGTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS GCA 72 bp CACGCTCTGCGAGGTCTGAGAAGAGCGCCTGGCTTGTaGTACGTCTCAGGGTATCCCAGTAGCTTCTGGAGA +
Preference number: 6 (lower is better)
Translates to: HALRGLRRAPGL*YVSGYPSSFWR
Trigger: TCTCCAGAAGCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTCGCAGAGCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS TCA 72 bp ATCAAAAATCTTGAAGACAGTGTTCACCAAATGTGGTaGAAGTTTCAGTCCAGTAGCTACGTATACAGCACG +
Preference number: 6 (lower is better)
Translates to: IKNLEDSVHQMW*KFQSSSYVYST
Trigger: CGTGCTGTATACGTAGCTACTGGACTGAAACTTTCACCACATTTGGTGAACACTGTCTTCAAGATTTTTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS GCA 72 bp AGCACGTTTAAATTCATCTTGTCCTATAGAGCGGCTTaGAAAGTTATACATGTTGAGAGCTATTGCAAAGTC +
Preference number: 6 (lower is better)
Translates to: STFKFILSYRAA*KVIHVESYCKV
Trigger: GACTTTGCAATAGCTCTCAACATGTATAACTTTGCAAGCCGCTCTATAGGACAAGATGAATTTAAACGTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2
CDS CCA 72 bp GATGTATTTTCCACATTAGTATACCGCAGGAGAATATaGGCAAAATCTTCTTCACTGATAGTATTCATTCCA +
Preference number: 6 (lower is better)
Translates to: DVFSTLVYRRRI*AKSSSLIVFIP
Trigger: TGGAATGAATACTATCAGTGAAGAAGATTTTGCCCATATTCTCCTGCGGTATACTAATGTGGAAAATACATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068999.14
ENSMUST00000136835.2