Pregenerated sensors for MICOS13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049760

Ensembl transcript IDs: ENSMUST00000052832.6

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	CTGGGCTCCAAACATTACATCTGGAACATAGAGATCCCTGTTAGCCAGGACTCTCCACTGGGATGTCTCTaGCATCCTGGTCTTGACCCC	+
Preference number: 2 (lower is better) Translates to: LGSKHYIWNIEIPVSQDSPLGCL*HPGLDP Trigger: GGGGTCAAGACCAGGATGGCAGAGACATCCCAGTGG...AGAGTCCTGGCTAACAGGGATCTCTATGTTCCAGATGTAATGTTTGGAGCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
3UTR TCA 72 bp	TTATTGGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTaGGGTCCCCACTGGGATGTCTCTGCCATCCTGGTC	+
Preference number: 3 (lower is better) Translates to: LLGQQCWKLPSE*GPHWDVSAILV Trigger: GACCAGGATGGCAGAGACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCCAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
3UTR CCA 72 bp	AAAACTAAAATCTTTCTGGGCTCCAAACATTACATCTaGAACATAGAGATCCCTGTTAGCCAGGACTCTGCC	+
Preference number: 3 (lower is better) Translates to: KTKIFLGSKHYI*NIEIPVSQDSA Trigger: GGCAGAGTCCTGGCTAACAGGGATCTCTATGTTCCAGATGTAATGTTTGGAGCCCAGAAAGATTTTAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	TGGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTAGTATTCTCGGGCCTTaGAGGGGGCCACCGACAAGG	+
Preference number: 4 (lower is better) Translates to: WASNAGSCPQSEVPTGMSSILGP*RGPPTR Trigger: CCTTGTCGGTGGCCCCCTCCAAGGCCCGAGAATACT...AGACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR GCA 90 bp	GGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTCATCTCCAGACCTGTCTaGTGGCACACATATTGGCTG	+
Preference number: 4 (lower is better) Translates to: GPAMLEAALRVRSPLGCLISRPV*WHTYWL Trigger: CAGCCAATATGTGTGCCAGCAGACAGGTCTGGAGAT...GAGACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	TGGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTACATATTGGCTGAACTaGTACATTGCTGGTGGCACA	+
Preference number: 4 (lower is better) Translates to: WASNAGSCPQSEVPTGMSTYWLN*YIAGGT Trigger: TGTGCCACCAGCAATGTACCAGTTCAGCCAATATGT...AGACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	ACCAGAAAACCGGCTGGGGACCATTCCCAAGTCCTTTATTGGGCCAGCAATGCTAATCTTTGGAGGGGTTaGGAGCTGTGGCATCTCCAG	+
Preference number: 4 (lower is better) Translates to: TRKPAGDHSQVLYWASNANLWRG*ELWHLQ Trigger: CTGGAGATGCCACAGCTCCCAACCCCTCCAAAGATT...AGCATTGCTGGCCCAATAAAGGACTTGGGAATGGTCCCCAGCCGGTTTTCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	ATTGGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTTGGAAATTTAATCTTTaGAGGGGTTGGGAGCTGTGG	+
Preference number: 4 (lower is better) Translates to: IGPAMLEAALRVRSPLGCWKFNL*RGWELW Trigger: CCACAGCTCCCAACCCCTCCAAAGATTAAATTTCCA...ACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	CTGGGCTCCAAACATTACATCTGGAACATAGAGATCCCTGTTAGCCAGGACTCTAGGGGTTGGGAGCTGTaGCATCTCCAGACCTGTCTG	+
Preference number: 4 (lower is better) Translates to: LGSKHYIWNIEIPVSQDSRGWEL*HLQTCL Trigger: CAGACAGGTCTGGAGATGCCACAGCTCCCAACCCCT...AGAGTCCTGGCTAACAGGGATCTCTATGTTCCAGATGTAATGTTTGGAGCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CCA 90 bp	CATTACATCTGGAACATAGAGATCCCTGTTAGCCAGGACTCTGCCCATAAAGCACTGGTACATTGCTGGTaGCACAACCTCCTCGGCCTT	+
Preference number: 4 (lower is better) Translates to: HYIWNIEIPVSQDSAHKALVHCW*HNLLGL Trigger: AAGGCCGAGGAGGTTGTGCCACCAGCAATGTACCAG...TGCTTTATGGGCAGAGTCCTGGCTAACAGGGATCTCTATGTTCCAGATGTAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CAA 90 bp	GGGCCAGCAATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTCTACTTGCTGTGTTCCTaGAGGTACTCCCAGCCCTCC	+
Preference number: 5 (lower is better) Translates to: GPAMLEAALRVRSPLGCLYLLCS*RYSQPS Trigger: GGAGGGCTGGGAGTACCTCAAGGAACACAGCAAGTA...GAGACATCCCAGTGGGGACCTCACTCTGAGGGCAGCTTCCAGCATTGCTGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CAA 90 bp	AGAGTGAGGTCCCCACTGGGATGTCTCTGCCATCCTGGTCTTGACCCCCATAATGAGTATTCTCGGGCCTaGGAGGGGGCCACCGACAAG	+
Preference number: 5 (lower is better) Translates to: RVRSPLGCLCHPGLDPHNEYSRA*EGATDK Trigger: CTTGTCGGTGGCCCCCTCCAAGGCCCGAGAATACTC...ATTATGGGGGTCAAGACCAGGATGGCAGAGACATCCCAGTGGGGACCTCACTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052832.6
CDS-3UTR CAA 90 bp	ACCAGAAAACCGGCTGGGGACCATTCCCAAGTCCTTTATTGGGCCAGCAATGCTAGGGCAGCCTCACTCTaGTCACTAGGCCCCAGCAGC	+
Preference number: 5 (lower is better) Translates to: TRKPAGDHSQVLYWASNARAASL*SLGPSS Trigger: GCTGCTGGGGCCTAGTGACAAGAGTGAGGCTGCCCT...AGCATTGCTGGCCCAATAAAGGACTTGGGAATGGTCCCCAGCCGGTTTTCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052832.6