RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MICOS10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050608

Ensembl transcript IDs: ENSMUST00000143971.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTGGGGCTaGCCACCAGCTCCACACTGTCAGTCAGAGCTCCATGCAGCAGGG +
Preference number: 1 (lower is better)
Translates to: HLCSDLSMSFHPGWG*PPAPHCQSELHAAG
Trigger: CCCTGCTGCATGGAGCTCTGACTGACAGTGTGGAGCTGGTGGCCAGCCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp AGTGGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTaGGGCTGGCCACCAGCTCCACACTGTCAGTCAGAGCTCCATGCA +
Preference number: 1 (lower is better)
Translates to: SGHLCSDLSMSFHPG*GWPPAPHCQSELHA
Trigger: TGCATGGAGCTCTGACTGACAGTGTGGAGCTGGTGGCCAGCCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp TCCCCTCGCCAACAAGCTCTGAGGCTTCTGCAGGCTCATCTGAGGTaGGGGCAGGGACGGGAGGACAAGATCAGGCTTTGTGTCTCCGAT +
Preference number: 1 (lower is better)
Translates to: SPRQQALRLLQAHLR*GQGREDKIRLCVSD
Trigger: ATCGGAGACACAAAGCCTGATCTTGTCCTCCCGTCCCTGCCCCCACCTCAGATGAGCCTGCAGAAGCCTCAGAGCTTGTTGGCGAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp CAGCGGGCCTTCCTTTACCTGGTCCCAAATCATTCCCTCCAGGAGTaGGCTGGTTCCTGGGGCACTTCTGCAGAACCCAAGGGTGCTAAG +
Preference number: 1 (lower is better)
Translates to: QRAFLYLVPNHSLQE*AGSWGTSAEPKGAK
Trigger: CTTAGCACCCTTGGGTTCTGCAGAAGTGCCCCAGGAACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAAAGGAAGGCCCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp GTGCAGGCCACTTCTGGGGCGCCACAGCTTTGCTCTAGCGTCCTGTaGCCAGCTGGGTGCCCATCACTGATCCTTAAACCCATGAATTTC +
Preference number: 1 (lower is better)
Translates to: VQATSGAPQLCSSVL*PAGCPSLILKPMNF
Trigger: GAAATTCATGGGTTTAAGGATCAGTGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGAAGTGGCCTGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp TTATGTATGTTGGCAGTGCAGGCCACTTCTGGGGCGCCACAGCTTTaGTCTAGCGTCCTGTGCCCAGCTGGGTGCCCATCACTGATCCTT +
Preference number: 1 (lower is better)
Translates to: LCMLAVQATSGAPQL*SSVLCPAGCPSLIL
Trigger: AAGGATCAGTGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGAAGTGGCCTGCACTGCCAACATACATAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp CTTTACCTGGTCCCAAATCATTCCCTCCAGGAGTGGGCTGGTTCCTaGGGCACTTCTGCAGAACCCAAGGGTGCTAAGGGACCAGATCGG +
Preference number: 1 (lower is better)
Translates to: LYLVPNHSLQEWAGS*GTSAEPKGAKGPDR
Trigger: CCGATCTGGTCCCTTAGCACCCTTGGGTTCTGCAGAAGTGCCCCAGGAACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp CAGTCTTGGGATGGGGGTGGGAAGGTCAACTGTGCATTAGGGGAGTaGGTTGGACATGTCTGTGTCTTCAGGAGGTCACAGAGGCCACAG +
Preference number: 1 (lower is better)
Translates to: QSWDGGGKVNCALGE*VGHVCVFRRSQRPQ
Trigger: CTGTGGCCTCTGTGACCTCCTGAAGACACAGACATGTCCAACGCACTCCCCTAATGCACAGTTGACCTTCCCACCCCCATCCCAAGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp TCTACGTCATGCCTCACAAACCCACAAGGACAGAGGGTACTGCAGTaGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTG +
Preference number: 1 (lower is better)
Translates to: STSCLTNPQGQRVLQ*PLVLRPQHVLPSRL
Trigger: CAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAGTACCCTCTGTCCTTGTGGGTTTGTGAGGCATGACGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp CAGGCTTTGTGTCTCCGATGGATGCCCTCTGCAAGAGCTACAAGGTaGGAATACAAACCGCTCTGGGACCAAGACAAACAGCGGGCCTTC +
Preference number: 1 (lower is better)
Translates to: QALCLRWMPSARATR*EYKPLWDQDKQRAF
Trigger: GAAGGCCCGCTGTTTGTCTTGGTCCCAGAGCGGTTTGTATTCCCACCTTGTAGCTCTTGCAGAGGGCATCCATCGGAGACACAAAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp AACGGTCTACGTCATGCCTCACAAACCCACAAGGACAGAGGGTACTaGAGTGGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCA +
Preference number: 1 (lower is better)
Translates to: NGLRHASQTHKDRGY*SGHLCSDLSMSFHP
Trigger: TGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAGTACCCTCTGTCCTTGTGGGTTTGTGAGGCATGACGTAGACCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp TCTGGGGCGCCACAGCTTTGCTCTAGCGTCCTGTGCCCAGCTGGGTaGCCATCACTGATCCTTAAACCCATGAATTTCCTTGTGTTTGAC +
Preference number: 1 (lower is better)
Translates to: SGAPQLCSSVLCPAG*PSLILKPMNFLVFD
Trigger: GTCAAACACAAGGAAATTCATGGGTTTAAGGATCAGTGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp TGGATGCCCTCTGCAAGAGCTACAAGGTGGGAATACAAACCGCTCTaGGACCAAGACAAACAGCGGGCCTTCCTTTACCTGGTCCCAAAT +
Preference number: 1 (lower is better)
Translates to: WMPSARATRWEYKPL*DQDKQRAFLYLVPN
Trigger: ATTTGGGACCAGGTAAAGGAAGGCCCGCTGTTTGTCTTGGTCCCAGAGCGGTTTGTATTCCCACCTTGTAGCTCTTGCAGAGGGCATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp AGCAGGGAGAGGGTGACATTCACTCAAAGGGACAGCTCAGCAAAATaGTCCAAAAGCCACGTCTCAGAACAAAGGCCTGCCTCTGTAGAC +
Preference number: 1 (lower is better)
Translates to: SRERVTFTQRDSSAK*SKSHVSEQRPASVD
Trigger: GTCTACAGAGGCAGGCCTTTGTTCTGAGACGTGGCTTTTGGAGCATTTTGCTGAGCTGTCCCTTTGAGTGAATGTCACCCTCTCCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 90 bp CCATCTCCCTTCTTAGCCCAGTGTCTGTTTCCTACAGCAGGGTTGTaGGACTGCATTCTTGGGTCTTTTGAAAGCAGGGAGAGGGTGACA +
Preference number: 1 (lower is better)
Translates to: PSPFLAQCLFPTAGL*DCILGSFESRERVT
Trigger: TGTCACCCTCTCCCTGCTTTCAAAAGACCCAAGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGACACTGGGCTAAGAAGGGAGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR TCA 90 bp TCTGTTTCCTACAGCAGGGTTGTGGGACTGCATTCTTGGGTCTTTTaGAAGCAGGGAGAGGGTGACATTCACTCAAAGGGACAGCTCAGC +
Preference number: 1 (lower is better)
Translates to: SVSYSRVVGLHSWVF*KQGEGDIHSKGQLS
Trigger: GCTGAGCTGTCCCTTTGAGTGAATGTCACCCTCTCCCTGCTTTCAAAAGACCCAAGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 90 bp ATACAGTGTCAAGTTCAGGCTGTATGTATTTATGTATGTTGGCAGTaGAGGCCACTTCTGGGGCGCCACAGCTTTGCTCTAGCGTCCTGT +
Preference number: 1 (lower is better)
Translates to: IQCQVQAVCIYVCWQ*RPLLGRHSFALASC
Trigger: ACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGAAGTGGCCTGCACTGCCAACATACATAAATACATACAGCCTGAACTTGACACTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR TCA 90 bp ATTTGGACAAGCTCAAAAATAGGCCTTCCAACAATGCAATCAGATTaGACCATGACAAGCAAAATGCAATTATGGGTTGGTTACATTAAA +
Preference number: 1 (lower is better)
Translates to: IWTSSKIGLPTMQSD*TMTSKMQLWVGYIK
Trigger: TTTAATGTAACCAACCCATAATTGCATTTTGCTTGTCATGGTTCAATCTGATTGCATTGTTGGAAGGCCTATTTTTGAGCTTGTCCAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CTGCAGTGGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTGGGGGGGTGCCACCAGTCTTaGGATGGGGGTGGGAAGGTC +
Preference number: 2 (lower is better)
Translates to: LQWPLVLRPQHVLPSRLGGCHQS*DGGGKV
Trigger: GACCTTCCCACCCCCATCCCAAGACTGGTGGCACCC...CCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAG
62% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 90 bp CATGCCTCACAAACCCACAAGGACAGAGGGTACTGCAGTGGCCACTaGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: HASQTHKDRGYCSGH*CSDLSMSFHPGWGW
Trigger: CCAGCCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAGTACCCTCTGTCCTTGTGGGTTTGTGAGGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR GCA 90 bp CGGGCCTTCCTTTACCTGGTCCCAAATCATTCCCTCCAGGAGTGGGCTGGTTCCTCACACACAGTGGGGTaGCACCAGTCTTGGGATGGG +
Preference number: 2 (lower is better)
Translates to: RAFLYLVPNHSLQEWAGSSHTVG*HQSWDG
Trigger: CCCATCCCAAGACTGGTGGCACCCCACTGTGTGTGA...GGAACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAAAGGAAGGCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR GCA 90 bp GCCTTCCTTTACCTGGTCCCAAATCATTCCCTCCAGGAGTGGGCTGGTTCCTGGAGGAACCCAGCCAGCTaGGGGAGTACTGTTCTACTG +
Preference number: 2 (lower is better)
Translates to: AFLYLVPNHSLQEWAGSWRNPAS*GSTVLL
Trigger: CAGTAGAACAGTACTCCCGCAGCTGGCTGGGTTCCT...CCAGGAACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAAAGGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp TCCCTTCTTAGCCCAGTGTCTGTTTCCTACAGCAGGGTTGTGGGACTGCATTCTTCCTTCCATCCAGGCTaGGGCTGGCCACCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: SLLSPVSVSYSRVVGLHSSFHPG*GWPPAP
Trigger: TGGAGCTGGTGGCCAGCCCCAGCCTGGATGGAAGGA...AGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGACACTGGGCTAAGAAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR TCA 90 bp AAGCGTCTCAATTCCACAGTGGAGCAGGGCCTCCAGAGGATTTCAATTCCGAGTGGGGACAGACATCAGTaGGGCAGACTGGTGCACCCA +
Preference number: 2 (lower is better)
Translates to: KRLNSTVEQGLQRISIPSGDRHQ*GRLVHP
Trigger: TGGGTGCACCAGTCTGCCTCACTGATGTCTGTCCCC...ACTCGGAATTGAAATCCTCTGGAGGCCCTGCTCCACTGTGGAATTGAGACGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp TCCCTTCTTAGCCCAGTGTCTGTTTCCTACAGCAGGGTTGTGGGACTGCATTCTGGCACAGCCCATCTTTaGCAGAGCACCCCTGTTGCC +
Preference number: 2 (lower is better)
Translates to: SLLSPVSVSYSRVVGLHSGTAHL*QSTPVA
Trigger: GGCAACAGGGGTGCTCTGCCAAAGATGGGCTGTGCC...AGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGACACTGGGCTAAGAAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CTCAATTCCACAGTGGAGCAGGGCCTCCAGAGGATTTCAATTCCGAGTGAAACTCCTCCAGGAGTGGGCTaGTTCCTGGGGCACTTCTGC +
Preference number: 2 (lower is better)
Translates to: LNSTVEQGLQRISIPSETPPGVG*FLGHFC
Trigger: GCAGAAGTGCCCCAGGAACCAGCCCACTCCTGGAGG...AGTTTCACTCGGAATTGAAATCCTCTGGAGGCCCTGCTCCACTGTGGAATTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp AGAGGGAGGGGAGAGGCTACCCTGAACTTACTCACTAAAGGACTGAGGTCTAACCTGCTCCCCCTGCCCTaGATAGCTCAGGAACTGCTT +
Preference number: 2 (lower is better)
Translates to: RGRGEATLNLLTKGLRSNLLPLP*IAQELL
Trigger: AAGCAGTTCCTGAGCTATCCAGGGCAGGGGGAGCAG...GTTAGACCTCAGTCCTTTAGTGAGTAAGTTCAGGGTAGCCTCTCCCCTCCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CTCAATTCCACAGTGGAGCAGGGCCTCCAGAGGATTTCAATTCCGAGTGAAACTGAGTGGGCTGGTTCCTaGGGCACTTCTGCAGAACCC +
Preference number: 2 (lower is better)
Translates to: LNSTVEQGLQRISIPSETEWAGS*GTSAEP
Trigger: GGGTTCTGCAGAAGTGCCCCAGGAACCAGCCCACTC...AGTTTCACTCGGAATTGAAATCCTCTGGAGGCCCTGCTCCACTGTGGAATTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CAATTCCGAGTGAAACTTCAAGTAGAACAGAATGCTTCCCCTCGCCAACAAGCTCAGGCTCATCTGAGGTaGGGGCAGGGACGGGAGGAC +
Preference number: 2 (lower is better)
Translates to: QFRVKLQVEQNASPRQQAQAHLR*GQGRED
Trigger: GTCCTCCCGTCCCTGCCCCCACCTCAGATGAGCCTG...AGCTTGTTGGCGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CCATGGACTCCATCCTCGTGGAAACGCTCTGCAGAGTTTATTTGGACAAGCTCAAGTGCAGGCCACTTCTaGGGCGCCACAGCTTTGCTC +
Preference number: 2 (lower is better)
Translates to: PWTPSSWKRSAEFIWTSSSAGHF*GATALL
Trigger: GAGCAAAGCTGTGGCGCCCCAGAAGTGGCCTGCACT...TGAGCTTGTCCAAATAAACTCTGCAGAGCGTTTCCACGAGGATGGAGTCCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 90 bp GAGCCATCTCCCTTCTTAGCCCAGTGTCTGTTTCCTACAGCAGGGTaGTGGGACTGCATTCTTGGGTCTTTTGAAAGCAGGGAGAGGGTG +
Preference number: 2 (lower is better)
Translates to: EPSPFLAQCLFPTAG*WDCILGSFESRERV
Trigger: CACCCTCTCCCTGCTTTCAAAAGACCCAAGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGACACTGGGCTAAGAAGGGAGATGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR GCA 90 bp AGAGGGAGGGGAGAGGCTACCCTGAACTTACTCACTAAAGGACTGAGGTCTAACTGCAGTGGCCACTTGTaGTCAGACCTCAGCATGTCC +
Preference number: 2 (lower is better)
Translates to: RGRGEATLNLLTKGLRSNCSGHL*SDLSMS
Trigger: GGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCA...GTTAGACCTCAGTCCTTTAGTGAGTAAGTTCAGGGTAGCCTCTCCCCTCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR GCA 90 bp AAAGGGACAGCTCAGCAAAATGCTCCAAAAGCCACGTCTCAGAACAAAGGCCTGGCCATGACCATGACTTaGTGTCCTGGGCACAGCCCA +
Preference number: 2 (lower is better)
Translates to: KGTAQQNAPKATSQNKGLAMTMT*CPGHSP
Trigger: TGGGCTGTGCCCAGGACAGCAAGTCATGGTCATGGC...CAGGCCTTTGTTCTGAGACGTGGCTTTTGGAGCATTTTGCTGAGCTGTCCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CTAAGGGACCAGATCGGTACAACAGAGATGTCCCTGTCCATTCCATGTTCCTGTCCACCAGTCTTGGGATaGGGGTGGGAAGGTCAACTG +
Preference number: 2 (lower is better)
Translates to: LRDQIGTTEMSLSIPCSCPPVLG*GWEGQL
Trigger: CAGTTGACCTTCCCACCCCCATCCCAAGACTGGTGG...ACAGGAACATGGAATGGACAGGGACATCTCTGTTGTACCGATCTGGTCCCTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR TCA 90 bp CTAAGGGACCAGATCGGTACAACAGAGATGTCCCTGTCCATTCCATGTTCCTGTGTTAAGAGAGCCGTATaGAACACAGCCAAGCAGCTG +
Preference number: 2 (lower is better)
Translates to: LRDQIGTTEMSLSIPCSCVKRAV*NTAKQL
Trigger: CAGCTGCTTGGCTGTGTTTCATACGGCTCTCTTAAC...ACAGGAACATGGAATGGACAGGGACATCTCTGTTGTACCGATCTGGTCCCTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR GCA 90 bp CAGAGGATTTCAATTCCGAGTGAAACTTCAAGTAGAACAGAATGCTTCCCCTCGCAAGCAGCTGAGGCGTaGCATGACCATGACTTGCTG +
Preference number: 2 (lower is better)
Translates to: QRISIPSETSSRTECFPSQAAEA*HDHDLL
Trigger: CAGCAAGTCATGGTCATGGCACGCCTCAGCTGCTTG...CGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTGAAATCCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CAATTCCGAGTGAAACTTCAAGTAGAACAGAATGCTTCCCCTCGCCAACAAGCTGTCTTGGGATGGGGGTaGGAAGGTCAACTGTGCATT +
Preference number: 2 (lower is better)
Translates to: QFRVKLQVEQNASPRQQAVLGWG*EGQLCI
Trigger: AATGCACAGTTGACCTTCCCACCCCCATCCCAAGAC...AGCTTGTTGGCGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp CAGAGGATTTCAATTCCGAGTGAAACTTCAAGTAGAACAGAATGCTTCCCCTCGCTGAAGACCTCACCGTaGCCATCATCACACACAGTG +
Preference number: 2 (lower is better)
Translates to: QRISIPSETSSRTECFPSLKTSP*PSSHTV
Trigger: CACTGTGTGTGATGATGGCCACGGTGAGGTCTTCAG...CGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTGAAATCCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp GTGTCAAGTTCAGGCTGTATGTATTTATGTATGTTGGCAGTGCAGGCCACTTCTTATAGAAAGCTAACATaGAGAAGAGCTGGAGGGAGG +
Preference number: 2 (lower is better)
Translates to: VSSSGCMYLCMLAVQATSYRKLT*RRAGGR
Trigger: CCTCCCTCCAGCTCTTCTCCATGTTAGCTTTCTATA...AGAAGTGGCCTGCACTGCCAACATACATAAATACATACAGCCTGAACTTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp AAGCTCAAAAATAGGCCTTCCAACAATGCAATCAGATTGAACCATGACAAGCAATTCAAACACAAACAGTaGCTGGAGTTGAAAGCGTTG +
Preference number: 2 (lower is better)
Translates to: KLKNRPSNNAIRLNHDKQFKHKQ*LELKAL
Trigger: CAACGCTTTCAACTCCAGCCACTGTTTGTGTTTGAA...TTGCTTGTCATGGTTCAATCTGATTGCATTGTTGGAAGGCCTATTTTTGAGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CCA 90 bp AAGCTCAAAAATAGGCCTTCCAACAATGCAATCAGATTGAACCATGACAAGCAACAAAAGCAACAGACTTaGTTTCAAACACAAACAGTG +
Preference number: 2 (lower is better)
Translates to: KLKNRPSNNAIRLNHDKQQKQQT*FQTQTV
Trigger: CACTGTTTGTGTTTGAAACCAAGTCTGTTGCTTTTG...TTGCTTGTCATGGTTCAATCTGATTGCATTGTTGGAAGGCCTATTTTTGAGCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp TTGGCAGTGCAGGCCACTTCTGGGGCGCCACAGCTTTaGTCTAGCGTCCTGTGCCCAGCTGGGTGCCCATCA +
Preference number: 3 (lower is better)
Translates to: LAVQATSGAPQL*SSVLCPAGCPS
Trigger: TGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGAAGTGGCCTGCACTGCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CAA 90 bp CTGCAGTGGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTGGGGGGGGTGCCACCAGTCTaGGGATGGGGGTGGGAAGGT +
Preference number: 3 (lower is better)
Translates to: LQWPLVLRPQHVLPSRLGGVPPV*GWGWEG
Trigger: ACCTTCCCACCCCCATCCCAAGACTGGTGGCACCCC...CCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAG
63% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp GCAGCTGAGGCGTGCCATGACCATGACTTGCTGTCCTaGGCACAGCCCATCTTTGGCAGAGCACCCCTGTTG +
Preference number: 3 (lower is better)
Translates to: AAEACHDHDLLS*AQPIFGRAPLL
Trigger: CAACAGGGGTGCTCTGCCAAAGATGGGCTGTGCCCAGGACAGCAAGTCATGGTCATGGCACGCCTCAGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp CCTGGGCACAGCCCATCTTTGGCAGAGCACCCCTGTTaGCTGTTCGGATCCACGGCCCCAAACATGTTTCTG +
Preference number: 3 (lower is better)
Translates to: PGHSPSLAEHPC*LFGSTAPNMFL
Trigger: CAGAAACATGTTTGGGGCCGTGGATCCGAACAGGCAACAGGGGTGCTCTGCCAAAGATGGGCTGTGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp ACAGCCAAGCAGCTGAGGCGTGCCATGACCATGACTTaGTGTCCTGGGCACAGCCCATCTTTGGCAGAGCAC +
Preference number: 3 (lower is better)
Translates to: TAKQLRRAMTMT*CPGHSPSLAEH
Trigger: GTGCTCTGCCAAAGATGGGCTGTGCCCAGGACAGCAAGTCATGGTCATGGCACGCCTCAGCTGCTTGGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp ACTTCTGGGGCGCCACAGCTTTGCTCTAGCGTCCTGTaGCCAGCTGGGTGCCCATCACTGATCCTTAAACCC +
Preference number: 3 (lower is better)
Translates to: TSGAPQLCSSVL*PAGCPSLILKP
Trigger: GGGTTTAAGGATCAGTGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGGCGCCCCAGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TTGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGCTaGGGCTGGCCACCAGCTCCACACTGTCAGTCAGAG +
Preference number: 3 (lower is better)
Translates to: LCSDLSMSFHPG*GWPPAPHCQSE
Trigger: CTCTGACTGACAGTGTGGAGCTGGTGGCCAGCCCCAGCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp GTCCCAAATCATTCCCTCCAGGAGTGGGCTGGTTCCTaGGGCACTTCTGCAGAACCCAAGGGTGCTAAGGGA +
Preference number: 3 (lower is better)
Translates to: VPNHSLQEWAGS*GTSAEPKGAKG
Trigger: TCCCTTAGCACCCTTGGGTTCTGCAGAAGTGCCCCAGGAACCAGCCCACTCCTGGAGGGAATGATTTGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TTACCTGGTCCCAAATCATTCCCTCCAGGAGTGGGCTaGTTCCTGGGGCACTTCTGCAGAACCCAAGGGTGC +
Preference number: 3 (lower is better)
Translates to: LPGPKSFPPGVG*FLGHFCRTQGC
Trigger: GCACCCTTGGGTTCTGCAGAAGTGCCCCAGGAACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp CAACAAGCTCTGAGGCTTCTGCAGGCTCATCTGAGGTaGGGGCAGGGACGGGAGGACAAGATCAGGCTTTGT +
Preference number: 3 (lower is better)
Translates to: QQALRLLQAHLR*GQGREDKIRLC
Trigger: ACAAAGCCTGATCTTGTCCTCCCGTCCCTGCCCCCACCTCAGATGAGCCTGCAGAAGCCTCAGAGCTTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp GGGTGGGAAGGTCAACTGTGCATTAGGGGAGTGCGTTaGACATGTCTGTGTCTTCAGGAGGTCACAGAGGCC +
Preference number: 3 (lower is better)
Translates to: GWEGQLCIRGVR*TCLCLQEVTEA
Trigger: GGCCTCTGTGACCTCCTGAAGACACAGACATGTCCAACGCACTCCCCTAATGCACAGTTGACCTTCCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp CCACCAGTCTTGGGATGGGGGTGGGAAGGTCAACTGTaGATTAGGGGAGTGCGTTGGACATGTCTGTGTCTT +
Preference number: 3 (lower is better)
Translates to: PPVLGWGWEGQL*IRGVRWTCLCL
Trigger: AAGACACAGACATGTCCAACGCACTCCCCTAATGCACAGTTGACCTTCCCACCCCCATCCCAAGACTGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TGCCTCACAAACCCACAAGGACAGAGGGTACTGCAGTaGCCACTTGTGCTCAGACCTCAGCATGTCCTTCCA +
Preference number: 3 (lower is better)
Translates to: CLTNPQGQRVLQ*PLVLRPQHVLP
Trigger: TGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAGTACCCTCTGTCCTTGTGGGTTTGTGAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TCTGGGACCAAGACAAACAGCGGGCCTTCCTTTACCTaGTCCCAAATCATTCCCTCCAGGAGTGGGCTGGTT +
Preference number: 3 (lower is better)
Translates to: SGTKTNSGPSFT*SQIIPSRSGLV
Trigger: AACCAGCCCACTCCTGGAGGGAATGATTTGGGACCAGGTAAAGGAAGGCCCGCTGTTTGTCTTGGTCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CAA 90 bp CTTCCATCCAGGCTGGGGCTGGCCACCAGCTCCACACTGTCAGTCAGAGCTCCAAAGGCATTGCTTGCATaGGGCTTCCCGTTTTTAATT +
Preference number: 3 (lower is better)
Translates to: LPSRLGLATSSTLSVRAPKALLA*GFPFLI
Trigger: AATTAAAAACGGGAAGCCCAATGCAAGCAATGCCTT...TGGAGCTCTGACTGACAGTGTGGAGCTGGTGGCCAGCCCCAGCCTGGATGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp GCCCAGTGTCTGTTTCCTACAGCAGGGTTGTGGGACTaGATTCTTGGGTCTTTTGAAAGCAGGGAGAGGGTG +
Preference number: 3 (lower is better)
Translates to: AQCLFPTAGLWD*ILGSFESRERV
Trigger: CACCCTCTCCCTGCTTTCAAAAGACCCAAGAATGCAGTCCCACAACCCTGCTGTAGGAAACAGACACTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp CGGGAGGACAAGATCAGGCTTTGTGTCTCCGATGGATaGCCTCTGCAAGAGCTACAAGGTGGGAATACAAAC +
Preference number: 3 (lower is better)
Translates to: REDKIRLCVSDG*PLQELQGGNTN
Trigger: GTTTGTATTCCCACCTTGTAGCTCTTGCAGAGGGCATCCATCGGAGACACAAAGCCTGATCTTGTCCTCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp CCACAGCTTTGCTCTAGCGTCCTGTGCCCAGCTGGGTaGCCATCACTGATCCTTAAACCCATGAATTTCCTT +
Preference number: 3 (lower is better)
Translates to: PQLCSSVLCPAG*PSLILKPMNFL
Trigger: AAGGAAATTCATGGGTTTAAGGATCAGTGATGGGCACCCAGCTGGGCACAGGACGCTAGAGCAAAGCTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TCTGCAAGAGCTACAAGGTGGGAATACAAACCGCTCTaGGACCAAGACAAACAGCGGGCCTTCCTTTACCTG +
Preference number: 3 (lower is better)
Translates to: SARATRWEYKPL*DQDKQRAFLYL
Trigger: CAGGTAAAGGAAGGCCCGCTGTTTGTCTTGGTCCCAGAGCGGTTTGTATTCCCACCTTGTAGCTCTTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp TGTCTCCGATGGATGCCCTCTGCAAGAGCTACAAGGTaGGAATACAAACCGCTCTGGGACCAAGACAAACAG +
Preference number: 3 (lower is better)
Translates to: CLRWMPSARATR*EYKPLWDQDKQ
Trigger: CTGTTTGTCTTGGTCCCAGAGCGGTTTGTATTCCCACCTTGTAGCTCTTGCAGAGGGCATCCATCGGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR TCA 72 bp TTCCTTGTGTTTGACTCCAGGAGGGCAAAGGAGAGATaGAGCCAAAGCGTCTCAATTCCACAGTGGAGCAGG +
Preference number: 3 (lower is better)
Translates to: FLVFDSRRAKER*SQSVSIPQWSR
Trigger: CCTGCTCCACTGTGGAATTGAGACGCTTTGGCTTCATCTCTCCTTTGCCCTCCTGGAGTCAAACACAAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp AGGGTGACATTCACTCAAAGGGACAGCTCAGCAAAATaGTCCAAAAGCCACGTCTCAGAACAAAGGCCTGCC +
Preference number: 3 (lower is better)
Translates to: RVTFTQRDSSAK*SKSHVSEQRPA
Trigger: GGCAGGCCTTTGTTCTGAGACGTGGCTTTTGGAGCATTTTGCTGAGCTGTCCCTTTGAGTGAATGTCACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR TCA 72 bp TACAGCAGGGTTGTGGGACTGCATTCTTGGGTCTTTTaGAAGCAGGGAGAGGGTGACATTCACTCAAAGGGA +
Preference number: 3 (lower is better)
Translates to: YSRVVGLHSWVF*KQGEGDIHSKG
Trigger: TCCCTTTGAGTGAATGTCACCCTCTCCCTGCTTTCAAAAGACCCAAGAATGCAGTCCCACAACCCTGCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CAA 90 bp CAATTCCGAGTGAAACTTCAAGTAGAACAGAATGCTTCCCCTCGCCAACAAGCTAAAGGAATAAAGGCATaGCTTGCATTGGGCTTCCCG +
Preference number: 3 (lower is better)
Translates to: QFRVKLQVEQNASPRQQAKGIKA*LALGFP
Trigger: CGGGAAGCCCAATGCAAGCAATGCCTTTATTCCTTT...AGCTTGTTGGCGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR GCA 72 bp ATTTCAATTCCGAGTGAAACTTCAAGTAGAACAGAATaGTTCCCCTCGCCAACAAGCTCTGAGGCTTCTGCA +
Preference number: 3 (lower is better)
Translates to: ISIPSETSSRTE*FPSPTSSEASA
Trigger: TGCAGAAGCCTCAGAGCTTGTTGGCGAGGGGAAGCATTCTGTTCTACTTGAAGTTTCACTCGGAATTGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR-3UTR CAA 90 bp CTCAATTCCACAGTGGAGCAGGGCCTCCAGAGGATTTCAATTCCGAGTGAAACTACAAAAGCAACAGACTaGGTTTCAAACACAAACAGT +
Preference number: 3 (lower is better)
Translates to: LNSTVEQGLQRISIPSETTKATD*VSNTNS
Trigger: ACTGTTTGTGTTTGAAACCAAGTCTGTTGCTTTTGT...AGTTTCACTCGGAATTGAAATCCTCTGGAGGCCCTGCTCCACTGTGGAATTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CCA 72 bp CCATTCCATGTTCCTGTCATTTTCTACCTAGAGACTTaGGGACACAGTCTTCCCTTTGTGTTTTTGGATTGG +
Preference number: 3 (lower is better)
Translates to: PFHVPVIFYLET*GHSLPFVFLDW
Trigger: CCAATCCAAAAACACAAAGGGAAGACTGTGTCCCCAAGTCTCTAGGTAGAAAATGACAGGAACATGGAATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR TCA 72 bp AGCTCAAAAATAGGCCTTCCAACAATGCAATCAGATTaGACCATGACAAGCAAAATGCAATTATGGGTTGGT +
Preference number: 3 (lower is better)
Translates to: SSKIGLPTMQSD*TMTSKMQLWVG
Trigger: ACCAACCCATAATTGCATTTTGCTTGTCATGGTTCAATCTGATTGCATTGTTGGAAGGCCTATTTTTGAGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 72 bp GAGGTGGGGGCAGGGACGGGAGGACAAGATCAGGCTTaGTGTCTCCGATGGATGCCCTCTGCAAGAGCTACA +
Preference number: 4 (lower is better)
Translates to: EVGAGTGGQDQA*CLRWMPSARAT
Trigger: TGTAGCTCTTGCAGAGGGCATCCATCGGAGACACAAAGCCTGATCTTGTCCTCCCGTCCCTGCCCCCACCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 72 bp TCCTGGGCACAGCCCATCTTTGGCAGAGCACCCCTGTaGCCTGTTCGGATCCACGGCCCCAAACATGTTTCT +
Preference number: 4 (lower is better)
Translates to: SWAQPIFGRAPL*PVRIHGPKHVS
Trigger: AGAAACATGTTTGGGGCCGTGGATCCGAACAGGCAACAGGGGTGCTCTGCCAAAGATGGGCTGTGCCCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 72 bp CAAACCCACAAGGACAGAGGGTACTGCAGTGGCCACTaGTGCTCAGACCTCAGCATGTCCTTCCATCCAGGC +
Preference number: 4 (lower is better)
Translates to: QTHKDRGYCSGH*CSDLSMSFHPG
Trigger: GCCTGGATGGAAGGACATGCTGAGGTCTGAGCACAAGTGGCCACTGCAGTACCCTCTGTCCTTGTGGGTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
CDS-3UTR GCA 90 bp AACCAACAGCAAAAACAAGAGCCATCTCCCTTCTTAGCCCAGTGTCTGTTTCCTCGACCGTGTCGGCCATaGACCGGTCCCACTTTCTGC +
Preference number: 4 (lower is better)
Translates to: NQQQKQEPSPFLAQCLFPRPCRP*TGPTFC
Trigger: GCAGAAAGTGGGACCGGTGCATGGCCGACACGGTCG...AGGAAACAGACACTGGGCTAAGAAGGGAGATGGCTCTTGTTTTTGCTGTTGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
CDS-3UTR GCA 90 bp GTGTCAAGTTCAGGCTGTATGTATTTATGTATGTTGGCAGTGCAGGCCACTTCTACCGGTCCCACTTTCTaGCCAGCTCGGACTCCGACA +
Preference number: 4 (lower is better)
Translates to: VSSSGCMYLCMLAVQATSTGPTF*PARTPT
Trigger: TGTCGGAGTCCGAGCTGGGCAGAAAGTGGGACCGGT...AGAAGTGGCCTGCACTGCCAACATACATAAATACATACAGCCTGAACTTGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 72 bp GACTCCATCCTCGTGGAAACGCTCTGCAGAGTTTATTaGGACAAGCTCAAAAATAGGCCTTCCAACAATGCA +
Preference number: 4 (lower is better)
Translates to: DSILVETLCRVY*DKLKNRPSNNA
Trigger: TGCATTGTTGGAAGGCCTATTTTTGAGCTTGTCCAAATAAACTCTGCAGAGCGTTTCCACGAGGATGGAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2
3UTR CAA 72 bp CTCCTGCAACATAAAGGAATAAAGGCATTGCTTGCATaGGGCTTCCCGTTTTTAATTTATTTAAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: LLQHKGIKALLA*GFPFLIYLRPP
Trigger: AGGAGGTCTTAAATAAATTAAAAACGGGAAGCCCAATGCAAGCAATGCCTTTATTCCTTTATGTTGCAGGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143971.2