RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MICALL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033039

Ensembl transcript IDs: ENSMUST00000040320.10, ENSMUST00000229004.2, ENSMUST00000229031.2

Found 462 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACCGCTGCACCAGGTGCACCCGCTGCCCACAGGCTGCGCATGCGCTaGTCGGGGGCTGCTGTTTGCCCTGCTCGGACAGGCTGTCTGGGG +
Preference number: 1 (lower is better)
Translates to: TAAPGAPAAHRLRMR*SGAAVCPARTGCLG
Trigger: CCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGTGCAGCGGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR GCA 90 bp CTCCGCCAAGTACCGCTGCACCAGGTGCACCCGCTGCCCACAGGCTaGGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTGCTCGGACAG +
Preference number: 1 (lower is better)
Translates to: LRQVPLHQVHPLPTG*ACAARGLLFALLGQ
Trigger: CTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGTGCAGCGGTACTTGGCGGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR TCA 90 bp GGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATCATCCTGGCTaGGATCTCCCAGGTAGGAGAGCCCACCCAAGGGGAGGGTGGAAG +
Preference number: 1 (lower is better)
Translates to: GGSGAGQAVPQHHPG*DLPGRRAHPRGGWK
Trigger: CTTCCACCCTCCCCTTGGGTGGGCTCTCCTACCTGGGAGATCTCAGCCAGGATGATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CCACGGTCATCGTCCCCCTTGGCAGGTCCCCCGGCAGCAGAGTGCTaGTGTGGCCTCAAGGCTCCAGGAGAGGAAAGGAAGGTGGCTTCC +
Preference number: 1 (lower is better)
Translates to: PRSSSPLAGPPAAEC*CGLKAPGEERKVAS
Trigger: GGAAGCCACCTTCCTTTCCTCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTGCTGCCGGGGGACCTGCCAAGGGGGACGATGACCGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp AGACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTaGCACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGG +
Preference number: 1 (lower is better)
Translates to: RLPTRHNSQNQCPSL*HTAPIPGLPTHGGW
Trigger: CCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp GTCATCGTCCCCCTTGGCAGGTCCCCCGGCAGCAGAGTGCTGCTGTaGCCTCAAGGCTCCAGGAGAGGAAAGGAAGGTGGCTTCCTTCGC +
Preference number: 1 (lower is better)
Translates to: VIVPLGRSPGSRVLL*PQGSRRGKEGGFLR
Trigger: GCGAAGGAAGCCACCTTCCTTTCCTCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTGCTGCCGGGGGACCTGCCAAGGGGGACGATGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CTGGTTCAGGGAGAACAAGGAGAGCCACGGCCTCTGCCTGGAGCCTaGATCCCTGCTTGCTCCAGGCTGGCCACAGCATCTGGGGACAGA +
Preference number: 1 (lower is better)
Translates to: LVQGEQGEPRPLPGA*IPACSRLATASGDR
Trigger: TCTGTCCCCAGATGCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCTCCAGGCAGAGGCCGTGGCTCTCCTTGTTCTCCCTGAACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CCCCATCTGACCTGGTTCAGGGAGAACAAGGAGAGCCACGGCCTCTaGCTGGAGCCTGCATCCCTGCTTGCTCCAGGCTGGCCACAGCAT +
Preference number: 1 (lower is better)
Translates to: PHLTWFRENKESHGL*LEPASLLAPGWPQH
Trigger: ATGCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCTCCAGGCAGAGGCCGTGGCTCTCCTTGTTCTCCCTGAACCAGGTCAGATGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp AGAACCAGTGCCCTTCACTCTGCCACACAGCACCCATCCCAGGCCTaGCCACCCATGGGGGCTGGGCCACGCCAGATCATGACATGGCTT +
Preference number: 1 (lower is better)
Translates to: RTSALHSATQHPSQA*PPMGAGPRQIMTWL
Trigger: AAGCCATGTCATGATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTGGCAGAGTGAAGGGCACTGGTTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp TGCCAGGGGTACCAGGCACGTGCACAGCAGGATCCGAGGAGCTCTTaGGTACGGCAGGCGGCTCCAAAGGCTCTGCATTGGCAGTGTGAC +
Preference number: 1 (lower is better)
Translates to: CQGYQARAQQDPRSS*VRQAAPKALHWQCD
Trigger: GTCACACTGCCAATGCAGAGCCTTTGGAGCCGCCTGCCGTACCCAAGAGCTCCTCGGATCCTGCTGTGCACGTGCCTGGTACCCCTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 90 bp AGCCGTGTCCGGGGGCAGGTGGCCTCACAGGCTTGGCTCCTTTGGTaGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATGGTTTCCGGT +
Preference number: 1 (lower is better)
Translates to: SRVRGQVASQAWLLW*PSLQLETRREMVSG
Trigger: ACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR GCA 90 bp GACTTCCCGGACCCAGCCTGGTGCAGCGTTCTGCACACACAAAGGTaGCTTCTTCGGGCCCACTACTGTAAGAGCCTGGGACCAGCGTGC +
Preference number: 1 (lower is better)
Translates to: DFPDPAWCSVLHTQR*LLRAHYCKSLGPAC
Trigger: GCACGCTGGTCCCAGGCTCTTACAGTAGTGGGCCCGAAGAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 90 bp CTCTGCCACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTaGGCCACGCCAGATCATGACATGGCTTTGTCCTGTGGCATGAAA +
Preference number: 1 (lower is better)
Translates to: LCHTAPIPGLPTHGG*ATPDHDMALSCGMK
Trigger: TTTCATGCCACAGGACAAAGCCATGTCATGATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTGGCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp CCGGTTGAAAGGATTCTCCTTGCAGGAAGACTTGATTTGCAGCTGTaGGGATGCGCTCCCCACGGGAGGGGCAGGGTTCCGGTCTCCAGC +
Preference number: 1 (lower is better)
Translates to: PVERILLAGRLDLQL*GCAPHGRGRVPVSS
Trigger: GCTGGAGACCGGAACCCTGCCCCTCCCGTGGGGAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 90 bp TTAACCAGGGCCTGCTGTGAGAAGGACTGTGGTGAGGACCCCATCTaGCCTGGTTCAGGGAGAACAAGGAGAGCCACGGCCTCTGCCTGG +
Preference number: 1 (lower is better)
Translates to: LTRACCEKDCGEDPI*PGSGRTRRATASAW
Trigger: CCAGGCAGAGGCCGTGGCTCTCCTTGTTCTCCCTGAACCAGGTCAGATGGGGTCCTCACCACAGTCCTTCTCACAGCAGGCCCTGGTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp GCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTaGAAAGTACTCGAGCCCTTAACCAGGGCCTGCTGTGAGAAGGAC +
Preference number: 1 (lower is better)
Translates to: AGKAEARQPTLLLAC*KVLEPLTRACCEKD
Trigger: GTCCTTCTCACAGCAGGCCCTGGTTAAGGGCTCGAGTACTTTGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp TGCACACACAAAGGTGCCTTCTTCGGGCCCACTACTGTAAGAGCCTaGGACCAGCGTGCTGGAACACTGCCGACATCGGAAGCAGTGCCG +
Preference number: 1 (lower is better)
Translates to: CTHKGAFFGPTTVRA*DQRAGTLPTSEAVP
Trigger: CGGCACTGCTTCCGATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCTCTTACAGTAGTGGGCCCGAAGAAGGCACCTTTGTGTGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 90 bp AACAAGAAGGGGGTGGGGGTGGCACCACTGAAGGGCTTGGTAGAATaGGTACCCGCGCTGCCCTTCGTCCTGGCCTGCAGCATTTGTTCA +
Preference number: 1 (lower is better)
Translates to: NKKGVGVAPLKGLVE*VPALPFVLACSICS
Trigger: TGAACAAATGCTGCAGGCCAGGACGAAGGGCAGCGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGCCACCCCCACCCCCTTCTTGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 90 bp CTGGACCTTGCGTTTGATGAGTGGAAAGCCGTGTCCGGGGGCAGGTaGCCTCACAGGCTTGGCTCCTTTGGTGGCCTTCCTTACAGTTGG +
Preference number: 1 (lower is better)
Translates to: LDLAFDEWKAVSGGR*PHRLGSFGGLPYSW
Trigger: CCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCCACTCATCAAACGCAAGGTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 90 bp CAGAGTGCTGCTGTGGCCTCAAGGCTCCAGGAGAGGAAAGGAAGGTaGCTTCCTTCGCTGTCAGCTCTTGTCCCCTGGGGCCTTGCTCTT +
Preference number: 1 (lower is better)
Translates to: QSAAVASRLQERKGR*LPSLSALVPWGLAL
Trigger: AAGAGCAAGGCCCCAGGGGACAAGAGCTGACAGCGAAGGAAGCCACCTTCCTTTCCTCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 90 bp GGGGCTGGGCCACGCCAGATCATGACATGGCTTTGTCCTGTGGCATaGAACAGTGTCCTAGTCACTGCCTGGGGATGCAGAAGCCGCAGA +
Preference number: 1 (lower is better)
Translates to: GAGPRQIMTWLCPVA*NSVLVTAWGCRSRR
Trigger: TCTGCGGCTTCTGCATCCCCAGGCAGTGACTAGGACACTGTTTCATGCCACAGGACAAAGCCATGTCATGATCTGGCGTGGCCCAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp AGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTaGTGCAAAGTACTCGAGCCCTTAACCAGGGCCTGCTGTGAGAAG +
Preference number: 1 (lower is better)
Translates to: RAGKAEARQPTLLLA*CKVLEPLTRACCEK
Trigger: CTTCTCACAGCAGGCCCTGGTTAAGGGCTCGAGTACTTTGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 90 bp AATGGGCCCATCATCCCCGGACGTGGGGAAGACAGAAAGCCTGACTaGGAGAACACCCACCCAAAGCATCCCTTCCAGGCTGACCTGAGT +
Preference number: 1 (lower is better)
Translates to: NGPIIPGRGEDRKPD*ENTHPKHPFQADLS
Trigger: ACTCAGGTCAGCCTGGAAGGGATGCTTTGGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTCTTCCCCACGTCCGGGGATGATGGGCCCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp GGAAAAAGGTTCCCCACGTGCGGCAAGAAGACCCAGCTCCAGAGCTaGACCGGTTTGATGAACGTGAGCCACCGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: GKRFPTCGKKTQLQS*TGLMNVSHRVCVCV
Trigger: CACACACACACACACACGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCGCACGTGGGGAACCTTTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 90 bp CCTGGGTTACAGCAACTGGGTCATAGGGCTCCTCTGAAAGACCTCTaGGGTGGTGGCCCTGGTTCCAGGACAGCAAGTGAATCTGGAGAG +
Preference number: 1 (lower is better)
Translates to: PGLQQLGHRAPLKDL*GGGPGSRTASESGE
Trigger: CTCTCCAGATTCACTTGCTGTCCTGGAACCAGGGCCACCACCTCAGAGGTCTTTCAGAGGAGCCCTATGACCCAGTTGCTGTAACCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 90 bp CCCACCTTGGACATGTGCCTAAGGGCACCCTCTCTGTGGCTCTCCTaGTGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAAC +
Preference number: 1 (lower is better)
Translates to: PTLDMCLRAPSLWLS*CHSWPQVLCFAFLN
Trigger: GTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGCCACAGAGAGGGTGCCCTTAGGCACATGTCCAAGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 90 bp AACTACGGGAAATGGAGGACATTGATCGCAGGAGGAGCAAGGAGCTaGGGAAAGCCCTCGCCACCACTTAACCCAAGACAAGGGCGGGCT +
Preference number: 1 (lower is better)
Translates to: NYGKWRTLIAGGARS*GKPSPPLNPRQGRA
Trigger: AGCCCGCCCTTGTCTTGGGTTAAGTGGTGGCGAGGGCTTTCCTCAGCTCCTTGCTCCTCCTGCGATCAATGTCCTCCATTTCCCGTAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CCTCAGAGACCATGCATGGCTGGGGCTCTATGCACGCCTACCCTGTaGATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGAAATCCA +
Preference number: 1 (lower is better)
Translates to: PQRPCMAGALCTPTL*IDSPSPLCSGERNP
Trigger: TGGATTTCTTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATAGAGCCCCAGCCATGCATGGTCTCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CAGTTCACGATGGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTaGATCAGCACCTTCTCTCTGGCCCGATCCTCATCTGTCCAGTCC +
Preference number: 1 (lower is better)
Translates to: QFTMASRCSMRVMSS*ISTFSLARSSSVQS
Trigger: GGACTGGACAGATGAGGATCGGGCCAGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCCATCGTGAACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 90 bp TTCTTCTTCCTCTTCTTCCTCAAAGGGGTTGTAGGGCTTGGGCTCTaGCTCAGTTCCCGAGCTTTTCTGGGTCTGCTCCTCCAGGCCTCC +
Preference number: 1 (lower is better)
Translates to: FFFLFFLKGVVGLGL*LSSRAFLGLLLQAS
Trigger: GGAGGCCTGGAGGAGCAGACCCAGAAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTACAACCCCTTTGAGGAAGAAGAGGAAGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 90 bp TCTTTCTGGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTaGTCGCAGGAGGAGCAAGGAGCTGAGGAAAGCCCTCGCCACCAC +
Preference number: 1 (lower is better)
Translates to: SFWWLSAETTGNGGH*SQEEQGAEESPRHH
Trigger: GTGGTGGCGAGGGCTTTCCTCAGCTCCTTGCTCCTCCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp AGGTGGCCTCACAGGCTTGGCTCCTTTGGTGGCCTTCCTTACAGTTaGAGACGCGGAGGGAGATGGTTTCCGGTTGAAAGGATTCTCCTT +
Preference number: 1 (lower is better)
Translates to: RWPHRLGSFGGLPYS*RRGGRWFPVERILL
Trigger: AAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 90 bp GAGAGGAAAGGAAGGTGGCTTCCTTCGCTGTCAGCTCTTGTCCCCTaGGGCCTTGCTCTTGGCTTCTCGTTTATTCCCCAGAAACTTCAG +
Preference number: 1 (lower is better)
Translates to: ERKGRWLPSLSALVP*GLALGFSFIPQKLQ
Trigger: CTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCAAGGCCCCAGGGGACAAGAGCTGACAGCGAAGGAAGCCACCTTCCTTTCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 90 bp GGACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTGGCAACTaGGATACAGTGAGTTCCTTCCCAGGATGCACAAAGGGAGGGACT +
Preference number: 1 (lower is better)
Translates to: GQQVNLERLPRGTGN*DTVSSFPGCTKGGT
Trigger: AGTCCCTCCCTTTGTGCATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp GGTTCCAGGACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTaGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGCACAAAGGG +
Preference number: 1 (lower is better)
Translates to: GSRTASESGETTKGH*QLRYSEFLPRMHKG
Trigger: CCCTTTGTGCATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCCTGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp CAGCATCTGGGGACAGAATCCAAGTGGGCAGGGCTAAGTCACAACTaGTTGGGACACAGGGAAGAAGGAAAAATCTTTAGCCCAGACCAG +
Preference number: 1 (lower is better)
Translates to: QHLGTESKWAGLSHN*LGHREEGKIFSPDQ
Trigger: CTGGTCTGGGCTAAAGATTTTTCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAGCCCTGCCCACTTGGATTCTGTCCCCAGATGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 90 bp GGCTCCTTTGGTGGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATaGTTTCCGGTTGAAAGGATTCTCCTTGCAGGAAGACTTGATTTG +
Preference number: 1 (lower is better)
Translates to: GSFGGLPYSWRRGGR*FPVERILLAGRLDL
Trigger: CAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 90 bp AAGAACAAGGAGCAACCACCTAATAAGCAGCTACCTTATTTCCTCTaGGAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCC +
Preference number: 1 (lower is better)
Translates to: KNKEQPPNKQLPYFL*EASPTGGPTCSLCS
Trigger: GGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTATTAGGTGGTTGCTCCTTGTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 90 bp GGGATAACACTTATGTGTTCGGAATCAGAACTTGTCCAGCACAGATaGGAATCTAACTTGGACCCCACCTGGTACCCCACCTGGTACACT +
Preference number: 1 (lower is better)
Translates to: GITLMCSESELVQHR*ESNLDPTWYPTWYT
Trigger: AGTGTACCAGGTGGGGTACCAGGTGGGGTCCAAGTTAGATTCTCATCTGTGCTGGACAAGTTCTGATTCCGAACACATAAGTGTTATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp ATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTaGTTATCCTCCTGTTCCCTCAAGTCCATCTCCTATGCATCTGAG +
Preference number: 1 (lower is better)
Translates to: INPVFPISEGHVAVS*LSSCSLKSISYASE
Trigger: CTCAGATGCATAGGAGATGGACTTGAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp GACCTTCACCAATATTTTCATTTCCCTGTCCCCATAAATATTTCCTaGACCTGCTGGAAGTTTCCCATAACTCTATTAGAACATATGACC +
Preference number: 1 (lower is better)
Translates to: DLHQYFHFPVPINIS*TCWKFPITLLEHMT
Trigger: GGTCATATGTTCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACAGGGAAATGAAAATATTGGTGAAGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 90 bp CACCAATATTTTCATTTCCCTGTCCCCATAAATATTTCCTGCACCTaGTGGAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTT +
Preference number: 1 (lower is better)
Translates to: HQYFHFPVPINISCT*WKFPITLLEHMTCV
Trigger: AACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACAGGGAAATGAAAATATTGGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATGGGCAGGCGCAGGGCTaGGTACTGGTGGGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDGQAQG*VLVGLE
Trigger: CTCCAGCCCCACCAGTACCCAGCCCTGCGCCTGCCC...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATAGGGGTGCAGGGACTTaGGGGTGGCCTCTGACGGGG +
Preference number: 2 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDRGAGT*GWPLTG
Trigger: CCCCGTCAGAGGCCACCCCCAAGTCCCTGCACCCCT...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCGGTCATCGTCCCCCTTaGCAGGTCCCCCGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPGHRPP*QVPRQQ
Trigger: CTGCTGCCGGGGGACCTGCCAAGGGGGACGATGACC...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATGCTGGCCACAGCATCTaGGGACAGAATCCAAGTGGG +
Preference number: 2 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDAGHSI*GQNPSG
Trigger: CCCACTTGGATTCTGTCCCCAGATGCTGTGGCCAGC...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 90 bp TCTCCAGCCAACAAGAAGGGGGTGGGGGTGGCACCACTGAAGGGCTaGGTAGAATGGGTACCCGCGCTGCCCTTCGTCCTGGCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: SPANKKGVGVAPLKG*VEWVPALPFVLACS
Trigger: GCTGCAGGCCAGGACGAAGGGCAGCGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGCCACCCCCACCCCCTTCTTGTTGGCTGGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGAGAGCCACGGCCTCTaGCTGGAGCCTGCATCCCTG +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHESHGL*LEPASL
Trigger: CAGGGATGCAGGCTCCAGGCAGAGGCCGTGGCTCTC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp ACTTCCCGGACCCAGCCTGGTGCAGCGTTCTGCACACACAAAGGTGCCTTCTTCACCAGGTGCACCCGCTaGCCACAGGCTGCGCATGCG +
Preference number: 2 (lower is better)
Translates to: TSRTQPGAAFCTHKGAFFTRCTR*PQAAHA
Trigger: CGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGT...GAAGAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR-3UTR CCA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCAGCCACGGCCTCTGCCTaGAGCCTGCATCCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: SELGRQKLGSQPCCWPAAATASA*SLHPCL
Trigger: CAAGCAGGGATGCAGGCTCCAGGCAGAGGCCGTGGC...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 90 bp GGAAAGCCGTGTCCGGGGGCAGGTGGCCTCACAGGCTTGGCTCCTTaGGTGGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATGGTTTC +
Preference number: 2 (lower is better)
Translates to: GKPCPGAGGLTGLAP*VAFLTVGDAEGDGF
Trigger: GAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCGCCTGCATCCCTGCTTaGTCCAGGCTGGCCACAGCA +
Preference number: 2 (lower is better)
Translates to: EPQPAPGQLARCLGCPACACIPA*SRLATA
Trigger: TGCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGC...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCTGGAGCCTGCATCCCTaGTTGCTCCAGGCTGGCCAC +
Preference number: 2 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVWSLHP*LLQAGH
Trigger: GTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCTCCA...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGCTGACCTGAGTCAGTaGCCCAGCTCAGCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHADLSQ*PSSASS
Trigger: GCTGCTGGCTGAGCTGGGGCACTGACTCAGGTCAGC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGGGGTACCAGGCACGTaGACAGCAGGATCCGAGGAG +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHGVPGT*TAGSEE
Trigger: CTCCTCGGATCCTGCTGTGCACGTGCCTGGTACCCC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTGGTCATCGTCCCCCTTaGCAGGTCCCCCGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWAGHRPP*QVPRQQ
Trigger: CTGCTGCCGGGGGACCTGCCAAGGGGGACGATGACC...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCAGATGGGCTGGGTACTaGTGGGGCTGGCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPRWAGY*WGWLSF
Trigger: GAAGGAGAGCCAGCCCCACCAGTACCCAGCCCATCT...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp TTGATGAGTGGAAAGCCGTGTCCGGGGGCAGGTGGCCTCACAGGCTaGGCTCCTTTGGTGGCCTTCCTTACAGTTGGAGACGCGGAGGGA +
Preference number: 2 (lower is better)
Translates to: LMSGKPCPGAGGLTG*APLVAFLTVGDAEG
Trigger: TCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCCACTCATCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATAGTTGGCTGAGGGGGTaGCAGAGTTCCCAGAGGTGC +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHSWLRG*QSSQRC
Trigger: GCACCTCTGGGAACTCTGTCACCCCCTCAGCCAACT...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCCTCGCTGCCCTCATTTaGTCCGCCACGCAGCTTCTC +
Preference number: 2 (lower is better)
Translates to: EPQPAPGQLARCLGCPACLAALI*SATQLL
Trigger: GAGAAGCTGCGTGGCGGAGCAAATGAGGGCAGCGAG...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCACTGCTTGCTCCAGGCTaGCCACAGCATCTGGGGACA +
Preference number: 2 (lower is better)
Translates to: SELGRQKLGSQPCCWPAALLAPG*PQHLGT
Trigger: TGTCCCCAGATGCTGTGGCCAGCCTGGAGCAAGCAG...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTAGGCCTGCCCACCCATaGGGGCTGGGCCACGCCAGA +
Preference number: 2 (lower is better)
Translates to: FKQAGNKPGQETSQVALFRPAHP*GLGHAR
Trigger: TCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCT...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 90 bp CTGCCCACCCATGGGGGCTGGGCCACGCCAGATCATGACATGGCTTaGTCCTGTGGCATGAAACAGTGTCCTAGTCACTGCCTGGGGATG +
Preference number: 2 (lower is better)
Translates to: LPTHGGWATPDHDMA*SCGMKQCPSHCLGM
Trigger: CATCCCCAGGCAGTGACTAGGACACTGTTTCATGCCACAGGACAAAGCCATGTCATGATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTGCATCAGCACCTTCTCTCTGAGAGCCACGGCCTCTaGCTGGAGCCTGCATCCCTG +
Preference number: 2 (lower is better)
Translates to: GISLLDEGHEFLHQHLLSESHGL*LEPASL
Trigger: CAGGGATGCAGGCTCCAGGCAGAGGCCGTGGCTCTC...AGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTGGCACACCATGGCGATaGCCAGGCTCACCCACCTTG +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWAGTPWR*PGSPTL
Trigger: CAAGGTGGGTGAGCCTGGGCATCGCCATGGTGTGCC...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTGCATCAGCACCTTCTCTCTATGCCGTACCAGGGGTaGAGGGACTTGGGGGTGGCC +
Preference number: 2 (lower is better)
Translates to: GISLLDEGHEFLHQHLLSMPYQG*RDLGVA
Trigger: GGCCACCCCCAAGTCCCTGCACCCCTGGTACGGCAT...AGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGAGGAGCAGCCCCAGGCACACCATaGCGATGCCCAGGCTCACCC +
Preference number: 2 (lower is better)
Translates to: VALCRNYGKWRTLIAGGAAPGTP*RCPGSP
Trigger: GGGTGAGCCTGGGCATCGCCATGGTGTGCCTGGGGC...TGCTCCTCCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAGCCCCAGGCACACCATaGCGATGCCCAGGCTCACCC +
Preference number: 2 (lower is better)
Translates to: ALLMSQLASGALFCLSEPAPGTP*RCPGSP
Trigger: GGGTGAGCCTGGGCATCGCCATGGTGTGCCTGGGGC...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGGGGTACTGGTGGGGCTaGCTCTCCTTCTTCTTCCTC +
Preference number: 2 (lower is better)
Translates to: DCQPGTTARTSALHSATQGYWWG*LSFFFL
Trigger: GAGGAAGAAGAAGGAGAGCCAGCCCCACCAGTACCC...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGAACTCCACATCAGCCTaGCGCTGCTCCAGGTTCTGC +
Preference number: 2 (lower is better)
Translates to: DCQPGTTARTSALHSATQNSTSA*RCSRFC
Trigger: GCAGAACCTGGAGCAGCGCCAGGCTGATGTGGAGTT...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGGCCACTTGGGTGGCCTaGGGTTCTGGGTTACTCATT +
Preference number: 2 (lower is better)
Translates to: RQEDPAPELDRFDEREPPATWVA*GSGLLI
Trigger: AATGAGTAACCCAGAACCGCAGGCCACCCAAGTGGC...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGTGTTCACCACTAGGCTaGCCTAGCTCCCCAGAAGAC +
Preference number: 2 (lower is better)
Translates to: RQEDPAPELDRFDEREPPCSPLG*PSSPED
Trigger: GTCTTCTGGGGAGCTAGGGCAGCCTAGTGGTGAACA...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp TTCCCCACGTGCGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTaGATGAACGTGAGCCACCGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: FPTCGKKTQLQSWTG*MNVSHRVCVCVCVC
Trigger: ACACACACACACACACACACACACACGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCGCACGTGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGCAGCACAGAGCGCTCTaGGGGGCTGGACTTGCAACC +
Preference number: 2 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMQHRAL*GAGLAT
Trigger: GGTTGCAAGTCCAGCCCCTCAGAGCGCTCTGTGCTG...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGGCATCCCTTCCAGGCTaGCCTGAGTCAGTGCCCCAG +
Preference number: 2 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMASLPG*PESVPQ
Trigger: CTGGGGCACTGACTCAGGTCAGCCTGGAAGGGATGC...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGACAGAAAGCCTGACTaGGAGAACACCCACCCAAAG +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHDRKPD*ENTHPK
Trigger: CTTTGGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGCCGGCAGCAGAGTGCTaGTGTGGCCTCAAGGCTCCA +
Preference number: 2 (lower is better)
Translates to: NGAYSREQFKPQATSKCWPAAEC*CGLKAP
Trigger: TGGAGCCTTGAGGCCACAGCAGCACTCTGCTGCCGG...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GCCTGTCTGCCTCAGCCACTGCAGCCACACTCAGGCTTGGGTCATTATCCTCTGCCTGGTGCAGCGTTCTaGACACACAAAGGTGCCTTC +
Preference number: 2 (lower is better)
Translates to: ACLPQPLQPHSGLGHYPLPGAAF*THKGAF
Trigger: GAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGG...CAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR-3UTR GCA 90 bp ATGAGCTCCGACTCTCGCCGCACTAGTAGGTGCTTCTCATGGATGAGTTTGAACTGGGGAAGCACTGGGTaGTCTCGGGGCAGGGCGCTT +
Preference number: 2 (lower is better)
Translates to: MSSDSRRTSRCFSWMSLNWGSTG*SRGRAL
Trigger: AAGCGCCCTGCCCCGAGAGCACCCAGTGCTTCCCCA...GTTCAAACTCATCCATGAGAAGCACCTACTAGTGCGGCGAGAGTCGGAGCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CAGCTGGCGCTCAATATTGTCCATCTCACCGTAGATGTCCTCCTCGGGAATGTAGCCACGGCCTCTGCCTaGAGCCTGCATCCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: QLALNIVHLTVDVLLGNVATASA*SLHPCL
Trigger: CAAGCAGGGATGCAGGCTCCAGGCAGAGGCCGTGGC...TACATTCCCGAGGAGGACATCTACGGTGAGATGGACAATATTGAGCGCCAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGATCCGAGGAGCTCTTaGGTACGGCAGGCGGCTCCA +
Preference number: 2 (lower is better)
Translates to: FKQAGNKPGQETSQVALFDPRSS*VRQAAP
Trigger: TGGAGCCGCCTGCCGTACCCAAGAGCTCCTCGGATC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CAGTGCTTAGACCATAAGCTGCCTGGCACAGTCCCCAGTGACAGACTGCCCAGACGCTGCCCTTCGTCCTaGCCTGCAGCATTTGTTCAC +
Preference number: 2 (lower is better)
Translates to: QCLDHKLPGTVPSDRLPRRCPSS*PAAFVH
Trigger: GTGAACAAATGCTGCAGGCCAGGACGAAGGGCAGCG...TCTGGGCAGTCTGTCACTGGGGACTGTGCCAGGCAGCTTATGGTCTAAGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGTCCAGGGCATCCAGCTaGCGCTCAATATTGTCCATC +
Preference number: 2 (lower is better)
Translates to: DCQPGTTARTSALHSATQSRASS*RSILSI
Trigger: GATGGACAATATTGAGCGCCAGCTGGATGCCCTGGA...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp GTTGGAGACGCGGAGGGAGATGGTTTCCGGTTGAAAGGATTCTCCTaGCAGGAAGACTTGATTTGCAGCTGTGGGGATGCGCTCCCCACG +
Preference number: 2 (lower is better)
Translates to: VGDAEGDGFRLKGFS*QEDLICSCGDALPT
Trigger: CGTGGGGAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTGGAAGACAGAAAGCCTaGCTGAGAGAACACCCACCC +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWAGRQKA*LREHPP
Trigger: GGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTCTTCC...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATCCTCTGAAAGACCTCTaGGGTGGTGGCCCTGGTTCC +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHPLKDL*GGGPGS
Trigger: GGAACCAGGGCCACCACCTCAGAGGTCTTTCAGAGG...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATCATTTCACTTGCCCCTaGCATGTGCCACCTTGTTTC +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHHFTCP*HVPPCF
Trigger: GAAACAAGGTGGCACATGTCAGGGGCAAGTGAAATG...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATGCCTACCCTGTGCATTaGCAGCCCCTCTCCTCTGTG +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHAYPVH*QPLSSV
Trigger: CACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGC...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCAGAGATGGTTTCCGGTTaGAAGGATTCTCCTTGCAGG +
Preference number: 2 (lower is better)
Translates to: SELGRQKLGSQPCCWPAAEMVSG*KDSPCR
Trigger: CCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTC...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGGACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTGGCAACTGAGATACCCGGCAGCAGAGTGCTaGTGTGGCCTCAAGGCTCCA +
Preference number: 2 (lower is better)
Translates to: RTASESGETTKGHWQLRYPAAEC*CGLKAP
Trigger: TGGAGCCTTGAGGCCACAGCAGCACTCTGCTGCCGG...GTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp CTGAGATACAAACTTTCCTTGACACAGAGACAGCCTGGTAGAGCCCTCTCCTGGGCTGACCTGAGTCAGTaGCCCAGCTCAGCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: LRYKLSLTQRQPGRALSWADLSQ*PSSASS
Trigger: GCTGCTGGCTGAGCTGGGGCACTGACTCAGGTCAGC...CCAGGAGAGGGCTCTACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GTCCATCTCACCGTAGATGTCCTCCTCGGGAATGTACTGGTCAGCCTGGACCTTAGCAGAGTGCTGCTGTaGCCTCAAGGCTCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: VHLTVDVLLGNVLVSLDLSRVLL*PQGSRR
Trigger: TCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTGCT...AAGGTCCAGGCTGACCAGTACATTCCCGAGGAGGACATCTACGGTGAGATGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCATACACACAGGCCACTTaGGTGGCCTGCGGTTCTGGG +
Preference number: 2 (lower is better)
Translates to: ALLMSQLASGALFCLSEPYTQAT*VACGSG
Trigger: CCCAGAACCGCAGGCCACCCAAGTGGCCTGTGTGTA...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGTTCCCGAGCTTTTCTaGGTCTGCTCCTCCAGGCCT +
Preference number: 2 (lower is better)
Translates to: YARLPCALTAPLLCAVVKVPELF*VCSSRP
Trigger: AGGCCTGGAGGAGCAGACCCAGAAAAGCTCGGGAAC...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp AGAGACCATGCATGGCTGGGGCTCTATGCACGCCTACCCTGTGCATaGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGAAATCCAAGAC +
Preference number: 2 (lower is better)
Translates to: RDHAWLGLYARLPCA*TAPLLCAVVKEIQD
Trigger: GTCTTGGATTTCTTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATAGAGCCCCAGCCATGCATGGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATAGTTTCAAGGACATATaGGCTAGACAGGAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHSFKDI*ARQEGR
Trigger: CCTGCCTTCCTGTCTAGCGCATATGTCCTTGAAACT...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTAGTTCCTTCCCAGGATaGACAAAGGGAGGGACTCTG +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWASSFPG*TKGGTL
Trigger: CAGAGTCCCTCCCTTTGTGCATCCTGGGAAGGAACT...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGTCACTGCCTGGGGATaGAGAAGCCGCAGAGTAGTG +
Preference number: 2 (lower is better)
Translates to: FKQAGNKPGQETSQVALFVTAWG*RSRRVV
Trigger: CACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGAC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTAACAGCCAGAACCAGTaGCCTTCACTCTGCCACACA +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWANSQNQ*PSLCHT
Trigger: TGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTT...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTATCCTCCTCTTCCCTCTaGCGGTCCTCGTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLSSSSL*RSSSRQ
Trigger: CTGCCTGGACGAGGACCGGCAGAGGGAAGAGGAGGA...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCTTAGCCCAGACCAGCTaGAGACCATGGAGGAGGGGA +
Preference number: 2 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLLAQTS*RPWRRG
Trigger: TCCCCTCCTCCATGGTCTCCAGCTGGTCTGGGCTAA...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCATTAGCCCAGACCAGCTaGAGACCATGGAGGAGGGGA +
Preference number: 2 (lower is better)
Translates to: ALLMSQLASGALFCLSEPLAQTS*RPWRRG
Trigger: TCCCCTCCTCCATGGTCTCCAGCTGGTCTGGGCTAA...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGTCCTAGTCACTGCCTaGGGATGCAGAAGCCGCAGA +
Preference number: 2 (lower is better)
Translates to: NGAYSREQFKPQATSKCWVLVTA*GCRSRR
Trigger: TCTGCGGCTTCTGCATCCCCAGGCAGTGACTAGGAC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAGGGCTGGGTACTGGTaGGGCTGGAGATGGGCTGGG +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIRAGYW*GWRWAG
Trigger: CCCAGCCCATCTCCAGCCCCACCAGTACCCAGCCCT...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTCCAAAGGCTCTGCATTaGCAGTGTGACTGGAGCTCT +
Preference number: 2 (lower is better)
Translates to: GAYSREQFKPQATSKCWAPKALH*QCDWSS
Trigger: AGAGCTCCAGTCACACTGCCAATGCAGAGCCTTTGG...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CTTTCTGGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGGTGGCCTCACAGGCTTaGCTCCTTTGGTGGCCTTCC +
Preference number: 2 (lower is better)
Translates to: LSGGSLQKLREMEDIDRRVASQA*LLWWPS
Trigger: GGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCAC...CCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGAGGAGCACTTGCGTTTGATGAGTaGAAAGCCGTGTCCGGGGGC +
Preference number: 2 (lower is better)
Translates to: VALCRNYGKWRTLIAGGALAFDE*KAVSGG
Trigger: GCCCCCGGACACGGCTTTCCACTCATCAAACGCAAG...TGCTCCTCCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTGCATCAGCACCTTCTCTCTTCCTCGGGAATGTACTaGTCAGCCTGGACCTTGCGT +
Preference number: 2 (lower is better)
Translates to: GISLLDEGHEFLHQHLLSSSGMY*SAWTLR
Trigger: ACGCAAGGTCCAGGCTGACCAGTACATTCCCGAGGA...AGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTTGGCACAGTCCCCAGTaGCAGACTGCCCAGACCACA +
Preference number: 2 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLWHSPQ*QTAQTT
Trigger: TGTGGTCTGGGCAGTCTGTCACTGGGGACTGTGCCA...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTGCATCAGCACCTTCTCTCTAGGGGCACTGGCAACTaGGATACAGTGAGTTCCTTC +
Preference number: 2 (lower is better)
Translates to: GISLLDEGHEFLHQHLLSRGTGN*DTVSSF
Trigger: GAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCT...AGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCGATACAAACTTTCCTTaGCACAGAGACAGCCTGGTA +
Preference number: 2 (lower is better)
Translates to: EPQPAPGQLARCLGCPACDTNFP*HRDSLV
Trigger: TACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATC...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATGGACCCCATCTGACCTaGTTCAGGGAGAACAAGGAG +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHGPHLT*FRENKE
Trigger: CTCCTTGTTCTCCCTGAACCAGGTCAGATGGGGTCC...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CTTTCTGGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGGTCCTAGTCACTGCCTaGGGATGCAGAAGCCGCAGA +
Preference number: 2 (lower is better)
Translates to: LSGGSLQKLREMEDIDRRVLVTA*GCRSRR
Trigger: TCTGCGGCTTCTGCATCCCCAGGCAGTGACTAGGAC...CCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGAAATATCTTTGCCACTaGGAAGGACAAGGAGGAACG +
Preference number: 2 (lower is better)
Translates to: RQEDPAPELDRFDEREPPKYLCH*EGQGGT
Trigger: CGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTT...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCGCAGGGACTTGGGGGTaGCCTCTGACGGGGCAGGCG +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSAGTWG*PLTGQA
Trigger: CGCCTGCCCCGTCAGAGGCCACCCCCAAGTCCCTGC...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp GTGGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATGGTTTCCGGTaGAAAGGATTCTCCTTGCAGGAAGACTTGATTTGCAGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: VAFLTVGDAEGDGFR*KGFSLQEDLICSCG
Trigger: CCCACAGCTGCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CAGCTGGCGCTCAATATTGTCCATCTCACCGTAGATGTCCTCCTCGGGAATGTAGGAAGACAGAAAGCCTaGCTGAGAGAACACCCACCC +
Preference number: 2 (lower is better)
Translates to: QLALNIVHLTVDVLLGNVGRQKA*LREHPP
Trigger: GGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTCTTCC...TACATTCCCGAGGAGGACATCTACGGTGAGATGGACAATATTGAGCGCCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCTGGCACAGTCCCCAGTaGCAGACTGCCCAGACCACA +
Preference number: 2 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSWHSPQ*QTAQTT
Trigger: TGTGGTCTGGGCAGTCTGTCACTGGGGACTGTGCCA...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTCTGATGGGCCCATGTTaGCAGGACACAGGTGACTAT +
Preference number: 2 (lower is better)
Translates to: FKQAGNKPGQETSQVALFLMGPC*QDTGDY
Trigger: ATAGTCACCTGTGTCCTGTCAACATGGGCCCATCAG...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATAACAGCCAGAACCAGTaGCCTTCACTCTGCCACACA +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHNSQNQ*PSLCHT
Trigger: TGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTT...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCATGTGGCTGTCAGCTaGTTATCCTCCTGTTCCCTC +
Preference number: 2 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLHVAVS*LSSCSL
Trigger: GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTACATCAGCCTGGCGCTaGTCCAGGTTCTGCTGCTTG +
Preference number: 2 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLTSAWR*SRFCCL
Trigger: CAAGCAGCAGAACCTGGAGCAGCGCCAGGCTGATGT...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTAGCTGGCCACAGCATCTaGGGACAGAATCCAAGTGGG +
Preference number: 2 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLAGHSI*GQNPSG
Trigger: CCCACTTGGATTCTGTCCCCAGATGCTGTGGCCAGC...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCAGACCTCTGAGGTGGTaGCCCTGGTTCCAGGACAGC +
Preference number: 2 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSRPLRW*PWFQDS
Trigger: GCTGTCCTGGAACCAGGGCCACCACCTCAGAGGTCT...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAAGCAGCTCTTTCTGGTaGCTCTCTGCAGAAACTACG +
Preference number: 2 (lower is better)
Translates to: YARLPCALTAPLLCAVVKSSSFW*LSAETT
Trigger: CGTAGTTTCTGCAGAGAGCCACCAGAAAGAGCTGCT...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTTAGGGCTCTTTTCGGGGGTTCTCAGAGGGACATGTaGCTGTCAGCTGCTTATCCT +
Preference number: 2 (lower is better)
Translates to: NSSLRPPVSAGLRALFGGSQRDM*LSAAYP
Trigger: AGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGA...ACCCCCGAAAAGAGCCCTAAGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCCGCAGGGCTGGGTACTaGTGGGGCTGGAGATGGGCT +
Preference number: 2 (lower is better)
Translates to: RKVVLFTEIQTFLDTETARRAGY*WGWRWA
Trigger: AGCCCATCTCCAGCCCCACCAGTACCCAGCCCTGCG...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAATGTCCAGTCCTTTTCTaGCTTGTTGAGAAGGCACCG +
Preference number: 2 (lower is better)
Translates to: YARLPCALTAPLLCAVVKCPVLF*LVEKAP
Trigger: CGGTGCCTTCTCAACAAGCCAGAAAAGGACTGGACA...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp CATCTGGGGACAGAATCCAAGTGGGCAGGGCTAAGTCACAACTGGTaGGGACACAGGGAAGAAGGAAAAATCTTTAGCCCAGACCAGCTG +
Preference number: 2 (lower is better)
Translates to: HLGTESKWAGLSHNW*GHREEGKIFSPDQL
Trigger: CAGCTGGTCTGGGCTAAAGATTTTTCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAGCCCTGCCCACTTGGATTCTGTCCCCAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CAGTGCTTAGACCATAAGCTGCCTGGCACAGTCCCCAGTGACAGACTGCCCAGAAATACAGCTCCTGAGTaGGGTGACATGAGTTTCAAG +
Preference number: 2 (lower is better)
Translates to: QCLDHKLPGTVPSDRLPRNTAPE*GDMSFK
Trigger: CTTGAAACTCATGTCACCTCACTCAGGAGCTGTATT...TCTGGGCAGTCTGTCACTGGGGACTGTGCCAGGCAGCTTATGGTCTAAGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TTGCTCTTGGCTTCTCGTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTGCAGCACAGAGCGCTCTaGGGGGCTGGACTTGCAACC +
Preference number: 2 (lower is better)
Translates to: LLLASRLFPRNFSTFMVLQHRAL*GAGLAT
Trigger: GGTTGCAAGTCCAGCCCCTCAGAGCGCTCTGTGCTG...CAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCAGCCCATTCCCTTCTaGCACAGCACAGAGCGCTCT +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIQPIPF*HSTERS
Trigger: AGAGCGCTCTGTGCTGTGTCAGAAGGGAATGGGCTG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATAGCATCCCTTCCAGGCTaGCCTGAGTCAGTGCCCCAG +
Preference number: 2 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEIASLPG*PESVPQ
Trigger: CTGGGGCACTGACTCAGGTCAGCCTGGAAGGGATGC...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATCATTTCACTTGCCCCTaGCATGTGCCACCTTGTTTC +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHHFTCP*HVPPCF
Trigger: GAAACAAGGTGGCACATGTCAGGGGCAAGTGAAATG...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGCCTCTGCCTGGAGCCTaGATCCCTGCTTGCTCCAGG +
Preference number: 2 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLPLPGA*IPACSR
Trigger: CCTGGAGCAAGCAGGGATGCAGGCTCCAGGCAGAGG...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCCCCACCTGGTACACTaGACATCAGTGTCCTTTCTT +
Preference number: 2 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLPHLVH*TSVSFL
Trigger: AAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCGAAAGACCTCTGAGGTaGTGGCCCTGGTTCCAGGAC +
Preference number: 2 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSERPLR*WPWFQD
Trigger: GTCCTGGAACCAGGGCCACCACCTCAGAGGTCTTTC...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGACAGCAGCTCTTTCTaGTGGCTCTCTGCAGAAACT +
Preference number: 2 (lower is better)
Translates to: NGAYSREQFKPQATSKCWDSSSF*WLSAET
Trigger: AGTTTCTGCAGAGAGCCACCAGAAAGAGCTGCTGTC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTAGGGGCACTGGCAACTaGGATACAGTGAGTTCCTTC +
Preference number: 2 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLRGTGN*DTVSSF
Trigger: GAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCT...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCCTCTGAAAGACCTCTaGGGTGGTGGCCCTGGTTCC +
Preference number: 2 (lower is better)
Translates to: FQINPVFPISEGHVAVSCPLKDL*GGGPGS
Trigger: GGAACCAGGGCCACCACCTCAGAGGTCTTTCAGAGG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATGGAGGAGCAAGGAGCTaGGGAAAGCCCTCGCCACCA +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHGGARS*GKPSPP
Trigger: TGGTGGCGAGGGCTTTCCTCAGCTCCTTGCTCCTCC...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCAGCATCATCCTGGCTaGGATCTCCCAGGTAGGAGA +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIQHHPG*DLPGRR
Trigger: TCTCCTACCTGGGAGATCTCAGCCAGGATGATGCTG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCGGCACACCATGGCGATaGCCAGGCTCACCCACCTTG +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSGTPWR*PGSPTL
Trigger: CAAGGTGGGTGAGCCTGGGCATCGCCATGGTGTGCC...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCACCAGCTGGAGACCATaGAGGAGGGGAAAAGTCACC +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSITSWRP*RRGKVT
Trigger: GGTGACTTTTCCCCTCCTCCATGGTCTCCAGCTGGT...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCTGCTTGCTCCAGGCTaGCCACAGCATCTGGGGACA +
Preference number: 2 (lower is better)
Translates to: FQINPVFPISEGHVAVSCLLAPG*PQHLGT
Trigger: TGTCCCCAGATGCTGTGGCCAGCCTGGAGCAAGCAG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATATGTACTGGTCAGCCTaGACCTTGCGTTTGATGAGT +
Preference number: 2 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHMYWSA*TLRLMS
Trigger: ACTCATCAAACGCAAGGTCCAGGCTGACCAGTACAT...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGATACAAACTTTCCTTaGCACAGAGACAGCCTGGTA +
Preference number: 2 (lower is better)
Translates to: FKQAGNKPGQETSQVALFDTNFP*HRDSLV
Trigger: TACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGTCACTGCCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATAGCTACTGTGTTTAGTTTCAAGGACATATaGGCTAGACAGGAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: SHCLGMQKPQSSVIATVFSFKDI*ARQEGR
Trigger: CCTGCCTTCCTGTCTAGCGCATATGTCCTTGAAACT...AAACACAGTAGCTATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGAAAAAGGTTCCCCACGTaGGGCAAGAAGACCCAGCTC +
Preference number: 2 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGKRFPT*GKKTQL
Trigger: GAGCTGGGTCTTCTTGCCGCACGTGGGGAACCTTTT...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCTGTAAGAACCGAGTGTaGGCAGACCAAAGGAAAACA +
Preference number: 2 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLCKNRV*ADQRKT
Trigger: TGTTTTCCTTTGGTCTGCGCACACTCGGTTCTTACA...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTAGCAGAGTGCTGCTGTaGCCTCAAGGCTCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: MCHLVSPGITLMCSESELSRVLL*PQGSRR
Trigger: TCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTGCT...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGGAAAGACCTCTGAGGTaGTGGCCCTGGTTCCAGGAC +
Preference number: 2 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLERPLR*WPWFQD
Trigger: GTCCTGGAACCAGGGCCACCACCTCAGAGGTCTTTC...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCGGGGTCACATCAGCCTaGGACAGCATCATTCAAGCA +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIGVTSA*DSIIQA
Trigger: TGCTTGAATGATGCTGTCCCAGGCTGATGTGACCCC...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TGTCCCCATAAATATTTCCTGCACCTGCTGGAAGTTTCCCATAACTCTATTAGAGGGTACTGGTGGGGCTaGAGATGGGCTGGGTACTGG +
Preference number: 2 (lower is better)
Translates to: CPHKYFLHLLEVSHNSIRGYWWG*RWAGYW
Trigger: CCAGTACCCAGCCCATCTCCAGCCCCACCAGTACCC...TCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCGGCGTGGATAGCAAGTaGGGAAGCACTGGGTGCTCT +
Preference number: 2 (lower is better)
Translates to: FQINPVFPISEGHVAVSCGVDSK*GSTGCS
Trigger: AGAGCACCCAGTGCTTCCCCACTTGCTATCCACGCC...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTTCCTCTGTGCAGTGGTaGAAGAAATCCAAGACAGGA +
Preference number: 2 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLSSVQW*KKSKTG
Trigger: TCCTGTCTTGGATTTCTTTCACCACTGCACAGAGGA...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TTGCTCTTGGCTTCTCGTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTGCCTTTTCTGGCTTGTTaGGAAGGCACCGGAGCTCGA +
Preference number: 2 (lower is better)
Translates to: LLLASRLFPRNFSTFMVLPFLAC*EGTGAR
Trigger: TCGAGCTCCGGTGCCTTCTCAACAAGCCAGAAAAGG...CAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAACTCCAAAATATCTTTaGCACTGGGAAGGACAAGGA +
Preference number: 2 (lower is better)
Translates to: ALLMSQLASGALFCLSEPTPKYL*HWEGQG
Trigger: TCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGT...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAAGGCCTGCCAGCTTGTaGCAAGCCAATGGGGCGTAC +
Preference number: 2 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIRPASL*QANGAY
Trigger: GTACGCCCCATTGGCTTGGCACAAGCTGGCAGGCCT...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCGCCGCACTAGTAGGTaGTTCTCATGGATGAGTTTG +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIRRTSR*FSWMSL
Trigger: CAAACTCATCCATGAGAAGCACCTACTAGTGCGGCG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATAGGACCCCATCTGACCTaGTTCAGGGAGAACAAGGAG +
Preference number: 2 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEIGPHLT*FRENKE
Trigger: CTCCTTGTTCTCCCTGAACCAGGTCAGATGGGGTCC...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTGTAGGGCTTGGGCTCTaGCTCAGTTCCCGAGCTTTT +
Preference number: 2 (lower is better)
Translates to: MCHLVSPGITLMCSESELVGLGL*LSSRAF
Trigger: AAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTAC...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTAAATACAGCTCCTGAGTaGGGTGACATGAGTTTCAAG +
Preference number: 2 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLNTAPE*GDMSFK
Trigger: CTTGAAACTCATGTCACCTCACTCAGGAGCTGTATT...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCTCTGCATTGGCAGTGTaGCTGGAGCTCTCGGATGAC +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSSALAV*LELSDD
Trigger: GTCATCCGAGAGCTCCAGTCACACTGCCAATGCAGA...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTTAGGGCTCTTTTCGGGGGTTCAGGTGCTCTGTTTTaGCTTTCTGAACCAAAAATT +
Preference number: 2 (lower is better)
Translates to: NSSLRPPVSAGLRALFGGSGALF*LSEPKI
Trigger: AATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGA...ACCCCCGAAAAGAGCCCTAAGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATTCAGCACCTTCTCTCTaGCCCGATCCTCATCTGTCC +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHSAPSL*PDPHLS
Trigger: GGACAGATGAGGATCGGGCCAGAGAGAAGGTGCTGA...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATGACAGAAAGCCTGACTaGGAGAACACCCACCCAAAG +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHDRKPD*ENTHPK
Trigger: CTTTGGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTC...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATAGCAACTGAGATACAGTaGGTTCCTTCCCAGGATGCA +
Preference number: 2 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEIATEIQ*VPSQDA
Trigger: TGCATCCTGGGAAGGAACTCACTGTATCTCAGTTGC...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATCTGATGGGCCCATGTTaGCAGGACACAGGTGACTAT +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHLMGPC*QDTGDY
Trigger: ATAGTCACCTGTGTCCTGTCAACATGGGCCCATCAG...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAGCCTGCATCCCTGCTTaGTCCAGGCTGGCCACAGCA +
Preference number: 2 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRACIPA*SRLATA
Trigger: TGCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGC...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCCCATAAATATTTCCTaGACCTGCTGGAAGTTTCCC +
Preference number: 2 (lower is better)
Translates to: TECAQTKGKHPWICSRSIPINIS*TCWKFP
Trigger: GGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATGAAAGAATTCTTGGCTaGCATGGAGGCTCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHERILG*HGGSGA
Trigger: TGCCCCAGAGCCTCCATGGCAGCCAAGAATTCTTTC...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCCAGGAAGACTTGATTTaGAGCTGTGGGGATGCGCTC +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSQEDLI*SCGDAL
Trigger: GAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTG...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCGCAACTGAGATACAGTaGGTTCCTTCCCAGGATGCA +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSATEIQ*VPSQDA
Trigger: TGCATCCTGGGAAGGAACTCACTGTATCTCAGTTGC...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTTTCCAGGACAGCAAGTaGATCTGGAGAGACTACCAA +
Preference number: 2 (lower is better)
Translates to: MCHLVSPGITLMCSESELFQDSK*IWRDYQ
Trigger: TTGGTAGTCTCTCCAGATTCACTTGCTGTCCTGGAA...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATAGCAGCTCTTTCTGGTaGCTCTCTGCAGAAACTACG +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHSSSFW*LSAETT
Trigger: CGTAGTTTCTGCAGAGAGCCACCAGAAAGAGCTGCT...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAAGGGGTTGTAGGGCTTaGGCTCTGGCTCAGTTCCCG +
Preference number: 2 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRRGCRA*ALAQFP
Trigger: CGGGAACTGAGCCAGAGCCCAAGCCCTACAACCCCT...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCTTCCAGGACAGCAAGTaGATCTGGAGAGACTACCAA +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSFQDSK*IWRDYQ
Trigger: TTGGTAGTCTCTCCAGATTCACTTGCTGTCCTGGAA...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATACCCCACCTGGTACACTaGACATCAGTGTCCTTTCTT +
Preference number: 2 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIPHLVH*TSVSFL
Trigger: AAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGG...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 90 bp TTCTTCTTACTGTCAGACTCGGCCTCTCTTTGGAAATCTTTCTTCTaGATCATAGTTTCCAACATCTTGTCTTCCTCCTCTTCCCTCTGC +
Preference number: 2 (lower is better)
Translates to: FFLLSDSASLWKSFF*IIVSNILSSSSSLC
Trigger: GCAGAGGGAAGAGGAGGAAGACAAGATGTTGGAAACTATGATCAAGAAGAAAGATTTCCAAAGAGAGGCCGAGTCTGACAGTAAGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 90 bp TCTCGTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTGAACTaGCCTTTCTTCTTACTGTCAGACTCGGCCTCTCTTTGGAAATCT +
Preference number: 2 (lower is better)
Translates to: SRLFPRNFSTFMVLN*PFFLLSDSASLWKS
Trigger: AGATTTCCAAAGAGAGGCCGAGTCTGACAGTAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGAAAAAGGATCTGTTATTaGCCACATGGTATGATCCAG +
Preference number: 2 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGKRICY*PHGMIQ
Trigger: CTGGATCATACCATGTGGTCAATAACAGATCCTTTT...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCGCACCTTTATGGTCTTaGACTTGCCTTTCTTCTTAC +
Preference number: 2 (lower is better)
Translates to: RKVVLFTEIQTFLDTETAAPLWS*TCLSSY
Trigger: GTAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGC...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATCCCATAAATATTTCCTaGACCTGCTGGAAGTTTCCC +
Preference number: 2 (lower is better)
Translates to: SQLASGALFCLSEPKIKHPINIS*TCWKFP
Trigger: GGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGG...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCACTCCAAAATATCTTTaGCACTGGGAAGGACAAGGA +
Preference number: 2 (lower is better)
Translates to: FQINPVFPISEGHVAVSCTPKYL*HWEGQG
Trigger: TCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGT...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR TCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAATTGACCACATGGTATaGTCCAGTGTAAGAACCGAG +
Preference number: 2 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIIDHMV*SSVRTE
Trigger: CTCGGTTCTTACACTGGATCATACCATGTGGTCAAT...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAAGTTCCTTCCCAGGATaGACAAAGGGAGGGACTCTG +
Preference number: 2 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRSSFPG*TKGGTL
Trigger: CAGAGTCCCTCCCTTTGTGCATCCTGGGAAGGAACT...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAAGGAAACCAGTCAGGTaGCCCTCTTTATCTTCCTAT +
Preference number: 2 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIRKPVR*PSLSSY
Trigger: ATAGGAAGATAAAGAGGGCCACCTGACTGGTTTCCT...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR GCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAGAATGTTTGTTTATTaGAGCATTGTCGGAAGTAGT +
Preference number: 2 (lower is better)
Translates to: RPKENTLGYVLEASRTRSRMFVY*SIVGSS
Trigger: ACTACTTCCGACAATGCTGCAATAAACAAACATTCT...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CCAGGTGCACCCGCTGCCCACAGGCTGCGCATGCGCTaGTCGGGGGCTGCTGTTTGCCCTGCTCGGACAGGC +
Preference number: 3 (lower is better)
Translates to: PGAPAAHRLRMR*SGAAVCPARTG
Trigger: GCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR GCA 72 bp CGCTGCCCACAGGCTGCGCATGCGCTGCTCGGGGGCTaGTGTTTGCCCTGCTCGGACAGGCTGTCTGGGGAG +
Preference number: 3 (lower is better)
Translates to: RCPQAAHALLGG*CLPCSDRLSGE
Trigger: CTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR GCA 72 bp GTACCGCTGCACCAGGTGCACCCGCTGCCCACAGGCTaGGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTG +
Preference number: 3 (lower is better)
Translates to: VPLHQVHPLPTG*ACAARGLLFAL
Trigger: CAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGTGCAGCGGTAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 72 bp GGGGTGGGGGTGGCACCACTGAAGGGCTTGGTAGAATaGGTACCCGCGCTGCCCTTCGTCCTGGCCTGCAGC +
Preference number: 3 (lower is better)
Translates to: GVGVAPLKGLVE*VPALPFVLACS
Trigger: GCTGCAGGCCAGGACGAAGGGCAGCGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGCCACCCCCACCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR GCA 72 bp TCATCGTCCCCCTTGGCAGGTCCCCCGGCAGCAGAGTaGTGCTGTGGCCTCAAGGCTCCAGGAGAGGAAAGG +
Preference number: 3 (lower is better)
Translates to: SSSPLAGPPAAE*CCGLKAPGEER
Trigger: CCTTTCCTCTCCTGGAGCCTTGAGGCCACAGCAGCACTCTGCTGCCGGGGGACCTGCCAAGGGGGACGATGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCAGCCTGCATCCCTGCTaGCTCCAGGCTGGCCACAGC +
Preference number: 3 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPSLHPC*LQAGHS
Trigger: GCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCT...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GGAGAACAAGGAGAGCCACGGCCTCTGCCTGGAGCCTaGATCCCTGCTTGCTCCAGGCTGGCCACAGCATCT +
Preference number: 3 (lower is better)
Translates to: GEQGEPRPLPGA*IPACSRLATAS
Trigger: AGATGCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCTCCAGGCAGAGGCCGTGGCTCTCCTTGTTCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GCCTCCCATTCTGGCCACCCACTCTCACCTCAGGCCTaGCAGCTTGTGCCAAGCCAATGGGGCGTACAGTCG +
Preference number: 3 (lower is better)
Translates to: ASHSGHPLSPQA*QLVPSQWGVQS
Trigger: CGACTGTACGCCCCATTGGCTTGGCACAAGCTGGCAGGCCTGAGGTGAGAGTGGGTGGCCAGAATGGGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp ACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTaGGCCACGCCAGATCATGACATGGCTTTGTCCTGT +
Preference number: 3 (lower is better)
Translates to: TAPIPGLPTHGG*ATPDHDMALSC
Trigger: ACAGGACAAAGCCATGTCATGATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp CGGGGGCAGGTGGCCTCACAGGCTTGGCTCCTTTGGTaGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATG +
Preference number: 3 (lower is better)
Translates to: RGQVASQAWLLW*PSLQLETRREM
Trigger: CATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp CTGTCTGCCTCAGCCACTGCAGCCACACTCAGGCTTGGGTCATTATCCTCTGCACTCGGGGGCTGCTGTTaGCCCTGCTCGGACAGGCTG +
Preference number: 3 (lower is better)
Translates to: LSASATAATLRLGSLSSALGGCC*PCSDRL
Trigger: CAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAG...TGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR GCA 72 bp GCTCTCCCTCCAAGAAGGCAGCCTCAGCCATCTACCTaGCTCCCATTCTGGCCACCCACTCTCACCTCAGGC +
Preference number: 3 (lower is better)
Translates to: ALPPRRQPQPST*LPFWPPTLTSG
Trigger: GCCTGAGGTGAGAGTGGGTGGCCAGAATGGGAGGCAGGTAGATGGCTGAGGCTGCCTTCTTGGAGGGAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CTTCGGGCCCACTACTGTAAGAGCCTGGGACCAGCGTaGTGGAACACTGCCGACATCGGAAGCAGTGCCGGT +
Preference number: 3 (lower is better)
Translates to: LRAHYCKSLGPA*WNTADIGSSAG
Trigger: ACCGGCACTGCTTCCGATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCTCTTACAGTAGTGGGCCCGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 72 bp TACCAGGCACGTGCACAGCAGGATCCGAGGAGCTCTTaGGTACGGCAGGCGGCTCCAAAGGCTCTGCATTGG +
Preference number: 3 (lower is better)
Translates to: YQARAQQDPRSS*VRQAAPKALHW
Trigger: CCAATGCAGAGCCTTTGGAGCCGCCTGCCGTACCCAAGAGCTCCTCGGATCCTGCTGTGCACGTGCCTGGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp GAAAGCCGTGTCCGGGGGCAGGTGGCCTCACAGGCTTaGCTCCTTTGGTGGCCTTCCTTACAGTTGGAGACG +
Preference number: 3 (lower is better)
Translates to: ESRVRGQVASQA*LLWWPSLQLET
Trigger: CGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp GCGTTTGATGAGTGGAAAGCCGTGTCCGGGGGCAGGTaGCCTCACAGGCTTGGCTCCTTTGGTGGCCTTCCT +
Preference number: 3 (lower is better)
Translates to: AFDEWKAVSGGR*PHRLGSFGGLP
Trigger: AGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCCACTCATCAAACGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp CCTGCCCACCCATGGGGGCTGGGCCACGCCAGATCATaGCATGGCTTTGTCCTGTGGCATGAAACAGTGTCC +
Preference number: 3 (lower is better)
Translates to: PAHPWGLGHARS*HGFVLWHETVS
Trigger: GGACACTGTTTCATGCCACAGGACAAAGCCATGTCATGATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp GAGATGGGCTGGGTACTGGTGGGGCTAGAGATGGGCTaGGTACTGGTGGGGCTGGCTCTCCTTCTTCTTCCT +
Preference number: 3 (lower is better)
Translates to: EMGWVLVGLEMG*VLVGLALLLLP
Trigger: AGGAAGAAGAAGGAGAGCCAGCCCCACCAGTACCCAGCCCATCTCTAGCCCCACCAGTACCCAGCCCATCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp AGGATTCTCCTTGCAGGAAGACTTGATTTGCAGCTGTaGGGATGCGCTCCCCACGGGAGGGGCAGGGTTCCG +
Preference number: 3 (lower is better)
Translates to: RILLAGRLDLQL*GCAPHGRGRVP
Trigger: CGGAACCCTGCCCCTCCCGTGGGGAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGAGAATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATAGATACAAACTTTCCTaGACACAGAGACAGCCTGGT +
Preference number: 3 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDRYKLS*TQRQPG
Trigger: ACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATCT...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CCATGCATGGCTGGGGCTCTATGCACGCCTACCCTGTaGATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAA +
Preference number: 3 (lower is better)
Translates to: PCMAGALCTPTL*IDSPSPLCSGE
Trigger: TTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATAGAGCCCCAGCCATGCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GACCCAGCCTGGTGCAGCGTTCTGCACACACAAAGGTaGCTTCTTCGGGCCCACTACTGTAAGAGCCTGGGA +
Preference number: 3 (lower is better)
Translates to: DPAWCSVLHTQR*LLRAHYCKSLG
Trigger: TCCCAGGCTCTTACAGTAGTGGGCCCGAAGAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 72 bp AATGTACTGGTCAGCCTGGACCTTGCGTTTGATGAGTaGAAAGCCGTGTCCGGGGGCAGGTGGCCTCACAGG +
Preference number: 3 (lower is better)
Translates to: NVLVSLDLAFDE*KAVSGGRWPHR
Trigger: CCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCCACTCATCAAACGCAAGGTCCAGGCTGACCAGTACATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGTCCTTTTCTGGCTTGTaGAGAAGGCACCGGAGCTCG +
Preference number: 3 (lower is better)
Translates to: RQEDPAPELDRFDEREPPSFSGL*RRHRSS
Trigger: CGAGCTCCGGTGCCTTCTCAACAAGCCAGAAAAGGA...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGGTGGCCTCACAGGCTaGGCTCCTTTGGTGGCCTTC +
Preference number: 3 (lower is better)
Translates to: FKQAGNKPGQETSQVALFGGLTG*APLVAF
Trigger: GAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGTGGTCAGCCTGGACCTaGCGTTTGATGAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: DCQPGTTARTSALHSATQWSAWT*RLMSGK
Trigger: CTTTCCACTCATCAAACGCAAGGTCCAGGCTGACCA...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp GCCCATCATCCCCGGACGTGGGGAAGACAGAAAGCCTaGCTGAGAGAACACCCACCCAAAGCATCCCTTCCA +
Preference number: 3 (lower is better)
Translates to: AHHPRTWGRQKA*LREHPPKASLP
Trigger: TGGAAGGGATGCTTTGGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTCTTCCCCACGTCCGGGGATGATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp CCTCTGAGGTGGTGGCCCTGGTTCCAGGACAGCAAGTaGATCTGGAGAGACTACCAAGGGGCACTGGCAACT +
Preference number: 3 (lower is better)
Translates to: PLRWWPWFQDSK*IWRDYQGALAT
Trigger: AGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCCTGGAACCAGGGCCACCACCTCAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp CTCCTGGGTTACAGCAACTGGGTCATAGGGCTCCTCTaGAAGACCTCTGAGGTGGTGGCCCTGGTTCCAGGA +
Preference number: 3 (lower is better)
Translates to: LLGYSNWVIGLL*KTSEVVALVPG
Trigger: TCCTGGAACCAGGGCCACCACCTCAGAGGTCTTTCAGAGGAGCCCTATGACCCAGTTGCTGTAACCCAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CACTGCAGCCACACTCAGGCTTGGGTCATTATCCTCTaGATCTTTAGCTTCTGCCGCCGCTGGCTGCTGCCT +
Preference number: 3 (lower is better)
Translates to: HCSHTQAWVIIL*IFSFCRRWLLP
Trigger: AGGCAGCAGCCAGCGGCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR-3UTR CAA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGGCTAGGCAGCCAACCTaGCTGCTGGCCTGCTGCAAA +
Preference number: 3 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMARQPT*LLACCK
Trigger: TTTGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGC...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp GAGAGGAAACGGAACTGTCTTCAGCCCATTCCCTTCTaGCACAGCACAGAGCGCTCTGAGGGGCTGGACTTG +
Preference number: 3 (lower is better)
Translates to: ERKRNCLQPIPF*HSTERSEGLDL
Trigger: CAAGTCCAGCCCCTCAGAGCGCTCTGTGCTGTGTCAGAAGGGAATGGGCTGAAGACAGTTCCGTTTCCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp ATCATCCCCGGACGTGGGGAAGACAGAAAGCCTGACTaGGAGAACACCCACCCAAAGCATCCCTTCCAGGCT +
Preference number: 3 (lower is better)
Translates to: IIPGRGEDRKPD*ENTHPKHPFQA
Trigger: AGCCTGGAAGGGATGCTTTGGGTGGGTGTTCTCTCAGTCAGGCTTTCTGTCTTCCCCACGTCCGGGGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp ACCATAAGCTGCCTGGCACAGTCCCCAGTGACAGACTaGCCAGACCACAAAAAGGAATGGGCCCATCATCCC +
Preference number: 3 (lower is better)
Translates to: TISCLAQSPVTD*PDHKKEWAHHP
Trigger: GGGATGATGGGCCCATTCCTTTTTGTGGTCTGGGCAGTCTGTCACTGGGGACTGTGCCAGGCAGCTTATGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CCCCCAGTTCCTTACACACAGGCCACTTGGGTGGCCTaGGGTTCTGGGTTACTCATTAGTTCTGCACTGGTG +
Preference number: 3 (lower is better)
Translates to: PPVPYTQATWVA*GSGLLISSALV
Trigger: CACCAGTGCAGAACTAATGAGTAACCCAGAACCGCAGGCCACCCAAGTGGCCTGTGTGTAAGGAACTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp CCTGTCTGCCTCAGCCACTGCAGCCACACTCAGGCTTaGGTCATTATCCTCTGCATCTTTAGCTTCTGCCGC +
Preference number: 3 (lower is better)
Translates to: PVCLSHCSHTQA*VIILCIFSFCR
Trigger: GCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CCA 72 bp CTCTTCTTCCTCAAAGGGGTTGTAGGGCTTGGGCTCTaGCTCAGTTCCCGAGCTTTTCTGGGTCTGCTCCTC +
Preference number: 3 (lower is better)
Translates to: LFFLKGVVGLGL*LSSRAFLGLLL
Trigger: GAGGAGCAGACCCAGAAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTACAACCCCTTTGAGGAAGAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp CACAGGCTTGGCTCCTTTGGTGGCCTTCCTTACAGTTaGAGACGCGGAGGGAGATGGTTTCCGGTTGAAAGG +
Preference number: 3 (lower is better)
Translates to: HRLGSFGGLPYS*RRGGRWFPVER
Trigger: CCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGCAGGGGTGCAGGGACTaGGGGGTGGCCTCTGACGGG +
Preference number: 3 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLQGCRD*GVASDG
Trigger: CCCGTCAGAGGCCACCCCCAAGTCCCTGCACCCCTG...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp CTTTCTGGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGGCACCACTGAAGGGCTaGGTAGAATGGGTACCCGCG +
Preference number: 3 (lower is better)
Translates to: LSGGSLQKLREMEDIDRRAPLKG*VEWVPA
Trigger: CGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGC...CCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR GCA 72 bp CCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTaGCATGACAGCAGCTCTTTCTGGTGGCTCTCTGCA +
Preference number: 3 (lower is better)
Translates to: PGQLARCLGCPA*HDSSSFWWLSA
Trigger: TGCAGAGAGCCACCAGAAAGAGCTGCTGTCATGGCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GGTGAAAGAAATCCAAGACAGGAAAGAATTCTTGGCTaGCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCG +
Preference number: 3 (lower is better)
Translates to: GERNPRQERILG*HGGSGAGQAVP
Trigger: CGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCTTTCCTGTCTTGGATTTCTTTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CGCTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTaGAGAGGCCCACTCCTCATAAACGAGACACCCGCA +
Preference number: 3 (lower is better)
Translates to: RSAQKQPKKCGI*RGPLLINETPA
Trigger: TGCGGGTGTCTCGTTTATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp ATGGCATCTCGCTGCTCGATGAGGGTCATGAGTTCCTaGATCAGCACCTTCTCTCTGGCCCGATCCTCATCT +
Preference number: 3 (lower is better)
Translates to: MASRCSMRVMSS*ISTFSLARSSS
Trigger: AGATGAGGATCGGGCCAGAGAGAAGGTGCTGATGCAGGAACTCATGACCCTCATCGAGCAGCGAGATGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp CTAGGGTGTCCTGCCTGCCATGACAGCAGCTCTTTCTaGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGA +
Preference number: 3 (lower is better)
Translates to: LGCPACHDSSSF*WLSAETTGNGG
Trigger: TCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAGAGCTGCTGTCATGGCAGGCAGGACACCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCAGTTCGGAATCAGAACTaGTCCAGCACAGATGAGAAT +
Preference number: 3 (lower is better)
Translates to: SELGRQKLGSQPCCWPAAVRNQN*SSTDEN
Trigger: ATTCTCATCTGTGCTGGACAAGTTCTGATTCCGAAC...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGGCCTGGACCTTGCGTTaGATGAGTGGAAAGCCGTGT +
Preference number: 3 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMAWTLR*MSGKPC
Trigger: ACACGGCTTTCCACTCATCAAACGCAAGGTCCAGGC...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCCTCGCTGCCCTCATTaGCTCCGCCACGCAGCTTCT +
Preference number: 3 (lower is better)
Translates to: TECAQTKGKHPWICSRSIPRCPH*LRHAAS
Trigger: AGAAGCTGCGTGGCGGAGCAAATGAGGGCAGCGAGG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp CCACGCCAGATCATGACATGGCTTTGTCCTGTGGCATaGAACAGTGTCCTAGTCACTGCCTGGGGATGCAGA +
Preference number: 3 (lower is better)
Translates to: PRQIMTWLCPVA*NSVLVTAWGCR
Trigger: TCTGCATCCCCAGGCAGTGACTAGGACACTGTTTCATGCCACAGGACAAAGCCATGTCATGATCTGGCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp CTTCTTCCTCTTCTTCCTCAAAGGGGTTGTAGGGCTTaGGCTCTGGCTCAGTTCCCGAGCTTTTCTGGGTCT +
Preference number: 3 (lower is better)
Translates to: LLPLLPQRGCRA*ALAQFPSFSGS
Trigger: AGACCCAGAAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTACAACCCCTTTGAGGAAGAAGAGGAAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp GGTGGCCTTCCTTACAGTTGGAGACGCGGAGGGAGATaGTTTCCGGTTGAAAGGATTCTCCTTGCAGGAAGA +
Preference number: 3 (lower is better)
Translates to: GGLPYSWRRGGR*FPVERILLAGR
Trigger: TCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGACAGGAAAGAATTCTaGGCTGCCATGGAGGCTCTG +
Preference number: 3 (lower is better)
Translates to: FKQAGNKPGQETSQVALFDRKEF*AAMEAL
Trigger: CAGAGCCTCCATGGCAGCCAAGAATTCTTTCCTGTC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GCTTTGTCCTGTGGCATGAAACAGTGTCCTAGTCACTaGCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATA +
Preference number: 3 (lower is better)
Translates to: ALSCGMKQCPSH*LGMQKPQSSVI
Trigger: TATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACTAGGACACTGTTTCATGCCACAGGACAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp CCTAACACGCTCTGCTCAGAAACAGCCAAAGAAGTGTaGGATCTGCAGAGGCCCACTCCTCATAAACGAGAC +
Preference number: 3 (lower is better)
Translates to: PNTLCSETAKEV*DLQRPTPHKRD
Trigger: GTCTCGTTTATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAGCGTGTTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTAGATACAAACTTTCCTaGACACAGAGACAGCCTGGT +
Preference number: 3 (lower is better)
Translates to: GAYSREQFKPQATSKCWARYKLS*TQRQPG
Trigger: ACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATCT...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGATTACACACAGGCCACTaGGGTGGCCTGCGGTTCTGG +
Preference number: 3 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGLHTGH*GGLRFW
Trigger: CCAGAACCGCAGGCCACCCAAGTGGCCTGTGTGTAA...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAAGCCTGCATCCCTGCTaGCTCCAGGCTGGCCACAGC +
Preference number: 3 (lower is better)
Translates to: NTLGYVLEASRTRSNHLISLHPC*LQAGHS
Trigger: GCTGTGGCCAGCCTGGAGCAAGCAGGGATGCAGGCT...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCCAGGCTCACCCACCTaGGACATGTGCCTAAGGGCA +
Preference number: 3 (lower is better)
Translates to: FQINPVFPISEGHVAVSCPGSPT*DMCLRA
Trigger: TGCCCTTAGGCACATGTCCAAGGTGGGTGAGCCTGG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTGACGACAGGGAAGAGTaGGCTGAGGGGGTGACAGAG +
Preference number: 3 (lower is better)
Translates to: MCHLVSPGITLMCSESELDDREE*AEGVTE
Trigger: CTCTGTCACCCCCTCAGCCAACTCTTCCCTGTCGTC...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTAACAGGCTTGGCTCCTTaGGTGGCCTTCCTTACAGTT +
Preference number: 3 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLTGLAP*VAFLTV
Trigger: AACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGT...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp GTGAATCTGGAGAGACTACCAAGGGGCACTGGCAACTaGGATACAGTGAGTTCCTTCCCAGGATGCACAAAG +
Preference number: 3 (lower is better)
Translates to: VNLERLPRGTGN*DTVSSFPGCTK
Trigger: CTTTGTGCATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp ACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTaGCAACTGAGATACAGTGAGTTCCTTCCCAGGATG +
Preference number: 3 (lower is better)
Translates to: TASESGETTKGH*QLRYSEFLPRM
Trigger: CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGTTCGGAATCAGAACTaGTCCAGCACAGATGAGAAT +
Preference number: 3 (lower is better)
Translates to: NGAYSREQFKPQATSKCWVRNQN*SSTDEN
Trigger: ATTCTCATCTGTGCTGGACAAGTTCTGATTCCGAAC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAATTGAAAGGATTCTCCTaGCAGGAAGACTTGATTTGC +
Preference number: 3 (lower is better)
Translates to: YARLPCALTAPLLCAVVKLKGFS*QEDLIC
Trigger: GCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAA...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp CTTATGTGTTCGGAATCAGAACTTGTCCAGCACAGATaGGAATCTAACTTGGACCCCACCTGGTACCCCACC +
Preference number: 3 (lower is better)
Translates to: LMCSESELVQHR*ESNLDPTWYPT
Trigger: GGTGGGGTACCAGGTGGGGTCCAAGTTAGATTCTCATCTGTGCTGGACAAGTTCTGATTCCGAACACATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp GTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTaGTTATCCTCCTGTTCCCTCAAGTCCATCTCCTAT +
Preference number: 3 (lower is better)
Translates to: VFPISEGHVAVS*LSSCSLKSISY
Trigger: ATAGGAGATGGACTTGAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp GGGACAGAATCCAAGTGGGCAGGGCTAAGTCACAACTaGTTGGGACACAGGGAAGAAGGAAAAATCTTTAGC +
Preference number: 3 (lower is better)
Translates to: GTESKWAGLSHN*LGHREEGKIFS
Trigger: GCTAAAGATTTTTCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAGCCCTGCCCACTTGGATTCTGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTAGATCATGACATGGCTTaGTCCTGTGGCATGAAACAG +
Preference number: 3 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLDHDMA*SCGMKQ
Trigger: CTGTTTCATGCCACAGGACAAAGCCATGTCATGATC...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TGTCCCCATAAATATTTCCTGCACCTGCTGGAAGTTTCCCATAACTCTATTAGACCTGGCCTGCAGCATTaGTTCACCACTAGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: CPHKYFLHLLEVSHNSIRPGLQH*FTTRLP
Trigger: GGGCAGCCTAGTGGTGAACAAATGCTGCAGGCCAGG...TCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCTCCTTGCAGGAAGACTaGATTTGCAGCTGTGGGGAT +
Preference number: 3 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSSLQED*ICSCGD
Trigger: ATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGA...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCTTGTCCCCTGGGGCCTaGCTCTTGGCTTCTCGTTTA +
Preference number: 3 (lower is better)
Translates to: RKVVLFTEIQTFLDTETALSPGA*LLASRL
Trigger: TAAACGAGAAGCCAAGAGCAAGGCCCCAGGGGACAA...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR TCA 72 bp GAACTGGATTCTGGATGTCTTCTGATGGGCCCATGTTaGCAGGACACAGGTGACTATGAGAAAGGTTGTCCT +
Preference number: 3 (lower is better)
Translates to: ELDSGCLLMGPC*QDTGDYEKGCP
Trigger: AGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATGGGCCCATCAGAAGACATCCAGAATCCAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CCA 72 bp GCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTaGATGTCTTCTGATGGGCCCATGTTGACAGGACAC +
Preference number: 3 (lower is better)
Translates to: AFTTCACRRTGF*MSSDGPMLTGH
Trigger: GTGTCCTGTCAACATGGGCCCATCAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTCTAAGTCACAACTGGTaGGGACACAGGGAAGAAGGA +
Preference number: 3 (lower is better)
Translates to: MCHLVSPGITLMCSESELLSHNW*GHREEG
Trigger: TCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAG...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGCTAAGTCACAACTGGTaGGGACACAGGGAAGAAGGA +
Preference number: 3 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLLSHNW*GHREEG
Trigger: TCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAG...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGAGATCATGACATGGCTTaGTCCTGTGGCATGAAACAG +
Preference number: 3 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGDHDMA*SCGMKQ
Trigger: CTGTTTCATGCCACAGGACAAAGCCATGTCATGATC...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCGACAGGAAAGAATTCTaGGCTGCCATGGAGGCTCTG +
Preference number: 3 (lower is better)
Translates to: RPKENTLGYVLEASRTRSDRKEF*AAMEAL
Trigger: CAGAGCCTCCATGGCAGCCAAGAATTCTTTCCTGTC...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATGGAGATGGTTTCCGGTaGAAAGGATTCTCCTTGCAG +
Preference number: 3 (lower is better)
Translates to: SQLASGALFCLSEPKIKHGDGFR*KGFSLQ
Trigger: CTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCC...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CCA 72 bp AAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTaGCTGTCAGCTGCTTATCCTCCTGTTCCCTCAAGT +
Preference number: 3 (lower is better)
Translates to: KLIQFSQSQRDM*LSAAYPPVPSS
Trigger: ACTTGAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATGACTCCAAAATATCTTaGCCACTGGGAAGGACAAGG +
Preference number: 3 (lower is better)
Translates to: SQLASGALFCLSEPKIKHDSKIS*PLGRTR
Trigger: CCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTC...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp GTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTaGACTTGCCTTTCTTCTTACTGTCAGACTCGGCCT +
Preference number: 3 (lower is better)
Translates to: VYSPETSAPLWS*TCLSSYCQTRP
Trigger: AGGCCGAGTCTGACAGTAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAGAAAAGGATCTGTTATaGACCACATGGTATGATCCA +
Preference number: 3 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIEKDLL*TTWYDP
Trigger: TGGATCATACCATGTGGTCAATAACAGATCCTTTTC...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp GAATGTGCTTATAGGAAGTTGGCCTTGATAAACGGGTaGGAAAAGGATCTGTTATTGACCACATGGTATGAT +
Preference number: 3 (lower is better)
Translates to: ECAYRKLALING*EKDLLLTTWYD
Trigger: ATCATACCATGTGGTCAATAACAGATCCTTTTCTCACCCGTTTATCAAGGCCAACTTCCTATAAGCACATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR TCA 72 bp CCCAGAGACGATCAGACTGTCCAGAAGTACACTAGCTaGATAAATAATGTAACCATTCTAACCACTAGTACA +
Preference number: 3 (lower is better)
Translates to: PRDDQTVQKYTS*INNVTILTTST
Trigger: TGTACTAGTGGTTAGAATGGTTACATTATTTATTCAGCTAGTGTACTTCTGGACAGTCTGATCGTCTCTGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR-3UTR CAA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATATTTATGGTCTTGAACTaGCCTTTCTTCTTACTGTCA +
Preference number: 3 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIFMVLN*PFFLLS
Trigger: TGACAGTAAGAAGAAAGGCAAGTTCAAGACCATAAA...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR GCA 72 bp TTTCATTTCCCTGTCCCCATAAATATTTCCTGCACCTaGTGGAAGTTTCCCATAACTCTATTAGAACATATG +
Preference number: 3 (lower is better)
Translates to: FHFPVPINISCT*WKFPITLLEHM
Trigger: CATATGTTCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACAGGGAAATGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR GCA 72 bp CAATATTTTCATTTCCCTGTCCCCATAAATATTTCCTaGACCTGCTGGAAGTTTCCCATAACTCTATTAGAA +
Preference number: 3 (lower is better)
Translates to: QYFHFPVPINIS*TCWKFPITLLE
Trigger: TTCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACAGGGAAATGAAAATATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 72 bp CCACAGGCTGCGCATGCGCTGCTCGGGGGCTGCTGTTaGCCCTGCTCGGACAGGCTGTCTGGGGAGAGGTCG +
Preference number: 4 (lower is better)
Translates to: PQAAHALLGGCC*PCSDRLSGERS
Trigger: CGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR GCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATGTCTGCCTCAGCCACTaGAGCCACACTCAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDVCLSH*SHTQAW
Trigger: CCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGAC...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGTCCTGGGGGCAGGTGTaGGCCGGCCACCAGGGGGAC +
Preference number: 4 (lower is better)
Translates to: RQEDPAPELDRFDEREPPSWGQV*AGHQGD
Trigger: GTCCCCCTGGTGGCCGGCCCACACCTGCCCCCAGGA...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCTGGCTGCACAGCGGGTaGTGTGGATGTGGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPWLHSG*CGCGGG
Trigger: CCCTCCCCCACATCCACATCACCCGCTGTGCAGCCA...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCATGCCGTACCAGGGGTaGAGGGACTTGGGGGTGGCC +
Preference number: 4 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPMPYQG*RDLGVA
Trigger: GGCCACCCCCAAGTCCCTGCACCCCTGGTACGGCAT...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp TGTCCGGGGGCAGGTGGCCTCACAGGCTTGGCTCCTTaGGTGGCCTTCCTTACAGTTGGAGACGCGGAGGGA +
Preference number: 4 (lower is better)
Translates to: CPGAGGLTGLAP*VAFLTVGDAEG
Trigger: TCCCTCCGCGTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp GCCCACAGGCTGCGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTGCTCGGACACCAAGAGAGCAGGGATaGCCAGTTCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: AHRLRMRCSGAAVCPARTPREQG*PVPFQP
Trigger: TGGCTGAAAAGGAACTGGGCATCCCTGCTCTCTTGG...TGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCTGGGGAAGCACTGGGTaGTCTCGGGGCAGGGCGCTT +
Preference number: 4 (lower is better)
Translates to: EPQPAPGQLARCLGCPACWGSTG*SRGRAL
Trigger: AAGCGCCCTGCCCCGAGAGCACCCAGTGCTTCCCCA...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATAAGAGGTGGCTTGGTTaGGGTGTGGAACTGTACCTC +
Preference number: 4 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDKRWLG*GVELYL
Trigger: GAGGTACAGTTCCACACCCCAACCAAGCCACCTCTT...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATCGTCCCGGAAGGAGCTaGTCAGGTCGCGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHRPGRS*SGRGCP
Trigger: TGGACATCCGCGACCTGAGCAGCTCCTTCCGGGACG...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCAGCCTGGGACCAGCGTaGTGGAACACTGCCGACATC +
Preference number: 4 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPSLGPA*WNTADI
Trigger: GATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCT...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TGCCCACAGGCTGCGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTGCTCGGACAGTCAGGGACACTCATaGAGACCATGTCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: CPQAAHALLGGCCLPCSDSQGHS*RPCHWG
Trigger: ACCCCAATGACATGGTCTCCATGAGTGTCCCTGACT...GTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR CCA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATAGCCACACTCAGGCTTaGGTCATTATCCTCTGCATC +
Preference number: 4 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDSHTQA*VIILCI
Trigger: GATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCT...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 72 bp AACAAGAAGGGGGTGGGGGTGGCACCACTGAAGGGCTaGGTAGAATGGGTACCCGCGCTGCCCTTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: NKKGVGVAPLKG*VEWVPALPFVL
Trigger: CAGGACGAAGGGCAGCGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGCCACCCCCACCCCCTTCTTGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
3UTR CAA 72 bp GGAAAGCCGTGTCCGGGGGCAGGTGGCCTCACAGGCTaGGCTCCTTTGGTGGCCTTCCTTACAGTTGGAGAC +
Preference number: 4 (lower is better)
Translates to: GKPCPGAGGLTG*APLVAFLTVGD
Trigger: GTCTCCAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGTCCTGGTTTGGGTGGTaGGGCAGCAGCTTGGCCAGA +
Preference number: 4 (lower is better)
Translates to: DCQPGTTARTSALHSATQSWFGW*GSSLAR
Trigger: TCTGGCCAAGCTGCTGCCTCACCACCCAAACCAGGA...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCAAGTTGGCTGAGGGGGTaGCAGAGTTCCCAGAGGTGC +
Preference number: 4 (lower is better)
Translates to: SELGRQKLGSQPCCWPAASWLRG*QSSQRC
Trigger: GCACCTCTGGGAACTCTGTCACCCCCTCAGCCAACT...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATAGGGGTTGTAGGGCTTaGGCTCTGGCTCAGTTCCCG +
Preference number: 4 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHRGCRA*ALAQFP
Trigger: CGGGAACTGAGCCAGAGCCCAAGCCCTACAACCCCT...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp TTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTaGCTCCTTGTGTTCCCAGGAGGAGCCCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: FPLRSKPNRWPH*LLVFPGGAPLP
Trigger: GGGCAGAGGGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp AGTCACTGCCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATAGCTACTGTGTTTCCCACAGGCTGCGCATaGGCTGCTCGGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SHCLGMQKPQSSVIATVFPTGCA*AARGLL
Trigger: CAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGG...AAACACAGTAGCTATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGTTCCTGGGGCTTGCTaGGAAGAGGTGGCTTGGTTG +
Preference number: 4 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHVPGAC*EEVAWL
Trigger: CAACCAAGCCACCTCTTCCCAGCAAGCCCCAGGAAC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCCACCAATGTGATCCATaGGGGATCCTTCCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPHQCDP*GILPWR
Trigger: GCGCCAAGGAAGGATCCCCCATGGATCACATTGGTG...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATAGGGGTGCAGGGACTTaGGGGTGGCCTCTGACGGGG +
Preference number: 4 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHRGAGT*GWPLTG
Trigger: CCCCGTCAGAGGCCACCCCCAAGTCCCTGCACCCCT...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp CGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACGTGAGCCACCGTCTGCATTGGCAGTGTaGCTGGAGCTCTCGGATGAC +
Preference number: 4 (lower is better)
Translates to: RQEDPAPELDRFDEREPPSALAV*LELSDD
Trigger: GTCATCCGAGAGCTCCAGTCACACTGCCAATGCAGA...CGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGCCTTTTCTGGCTTGTTaGGAAGGCACCGGAGCTCGA +
Preference number: 4 (lower is better)
Translates to: DCQPGTTARTSALHSATQPFLAC*EGTGAR
Trigger: TCGAGCTCCGGTGCCTTCTCAACAAGCCAGAAAAGG...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp TCTTTAGCTTCTGCCGCCGCTGGCTGCTGCCTTTGCTGTGAAAGGAGCCTAGTTCGTCCCGGAAGGAGCTaGTCAGGTCGCGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: SLASAAAGCCLCCERSLVRPGRS*SGRGCP
Trigger: TGGACATCCGCGACCTGAGCAGCTCCTTCCGGGACG...AACTAGGCTCCTTTCACAGCAAAGGCAGCAGCCAGCGGCGGCAGAAGCTAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCCCTGGTGCAGCGTTCTaGACACACAAAGGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: EPQPAPGQLARCLGCPACPGAAF*THKGAF
Trigger: GAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGG...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCTGTTCACCACTAGGCTaGCCTAGCTCCCCAGAAGAC +
Preference number: 4 (lower is better)
Translates to: EPQPAPGQLARCLGCPACCSPLG*PSSPED
Trigger: GTCTTCTGGGGAGCTAGGGCAGCCTAGTGGTGAACA...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGACCTCGGAGCTGGCCTaGAGCCTGTCTGCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMTSELA*SLSASA
Trigger: GGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGT...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCGTGTCCCTCTTGGCTTaGGAACAGGCGGTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVVSLLA*EQAVPV
Trigger: TACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACAC...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCAGCATGTGTCCCTCTTGGCTTaGGAACAGGCGGTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: RILGCHGGSGAGQAVPQHVSLLA*EQAVPV
Trigger: TACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACAC...ATGCTGCGGTACTGCCTGCCCTGCCCCAGAGCCTCCATGGCAGCCAAGAATTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGAGGGCTGGGTACTGGTaGGGCTGGAGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: NGAYSREQFKPQATSKCWRAGYW*GWRWAG
Trigger: CCCAGCCCATCTCCAGCCCCACCAGTACCCAGCCCT...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp AGGACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTGGCAACTGAGATACTGGCTGCACAGCGGGTaGTGTGGATGTGGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: RTASESGETTKGHWQLRYWLHSG*CGCGGG
Trigger: CCCTCCCCCACATCCACATCACCCGCTGTGCAGCCA...GTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCCCAAGAGAGCAGGGATaGCCAGTTCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: EPQPAPGQLARCLGCPACPREQG*PVPFQP
Trigger: TGGCTGAAAAGGAACTGGGCATCCCTGCTCTCTTGG...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TTCCCGGACCCAGCCTGGTGCAGCGTTCTGCACACACAAAGGTGCCTTCTTCGGTGGAGACCATGTCATTaGGGTCCAAGAGAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: FPDPAWCSVLHTQRCLLRWRPCH*GPREQG
Trigger: TCCCTGCTCTCTTGGACCCCAATGACATGGTCTCCA...CCGAAGAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
3UTR CAA 72 bp GTCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTaGCTGCTGGCCTGCTGCAAAGTACTCGAGCCCTTA +
Preference number: 4 (lower is better)
Translates to: VRAGKAEARQPT*LLACCKVLEPL
Trigger: TAAGGGCTCGAGTACTTTGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 72 bp GCATGGCTGGGGCTCTATGCACGCCTACCCTGTGCATaGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGAA +
Preference number: 4 (lower is better)
Translates to: AWLGLYARLPCA*TAPLLCAVVKE
Trigger: TTCTTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATAGAGCCCCAGCCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
3UTR CAA 72 bp TGCGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTaGATGAACGTGAGCCACCGTGTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: CGKKTQLQSWTG*MNVSHRVCVCV
Trigger: CACACACACACACACACGGTGGCTCACGTTCATCAAACCGGTCCAGCTCTGGAGCTGGGTCTTCTTGCCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGTCCTGGTTTGGGTGGTaGGGCAGCAGCTTGGCCAGA +
Preference number: 4 (lower is better)
Translates to: NGAYSREQFKPQATSKCWSWFGW*GSSLAR
Trigger: TCTGGCCAAGCTGCTGCCTCACCACCCAAACCAGGA...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCGCTGCCATCCTCTCTaGCAGCTTGGGTGTCCCTCT +
Preference number: 4 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLRCHPL*QLGCPS
Trigger: AGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCACCAGGTGCACCCGCTaGCCACAGGCTGCGCATGCG +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSITRCTR*PQAAHA
Trigger: CGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGT...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTAGCCTGGGACCAGCGTaGTGGAACACTGCCGACATC +
Preference number: 4 (lower is better)
Translates to: FKQAGNKPGQETSQVALFSLGPA*WNTADI
Trigger: GATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCT...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATCCGGACCCAGCCTGGTaGAGCGTTCTGCACACACAA +
Preference number: 4 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHPDPAW*SVLHTQ
Trigger: TTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGG...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCTCGCTGCCCTCATTTaGTCCGCCACGCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLLAALI*SATQLL
Trigger: GAGAAGCTGCGTGGCGGAGCAAATGAGGGCAGCGAG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TCAGAGCTGGGAAGGCAGAAGCTAGGCAGCCAACCTTGCTGCTGGCCTGCTGCAAGTCAGGGACACTCATaGAGACCATGTCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: SELGRQKLGSQPCCWPAASQGHS*RPCHWG
Trigger: ACCCCAATGACATGGTCTCCATGAGTGTCCCTGACT...TGCAGCAGGCCAGCAGCAAGGTTGGCTGCCTAGCTTCTGCCTTCCCAGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGGTGAGGCAGCAGCTTaGCCAGAACTGGTGAAGTGG +
Preference number: 4 (lower is better)
Translates to: YARLPCALTAPLLCAVVKGEAAA*PELVKW
Trigger: CCACTTCACCAGTTCTGGCCAAGCTGCTGCCTCACC...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCGGACTGGCCAGTTCCTaGGGCTTGCTGGGAAGAGGT +
Preference number: 4 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLGLASS*GLLGRG
Trigger: ACCTCTTCCCAGCAAGCCCCAGGAACTGGCCAGTCC...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCTCCGCCAAGTACCGCTaGACCAGGTGCACCCGCTGC +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSISAKYR*TRCTRC
Trigger: GCAGCGGGTGCACCTGGTGCAGCGGTACTTGGCGGA...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAACTGCACACACAAAGGTaGCTTCTTCGGGCCCACTAC +
Preference number: 4 (lower is better)
Translates to: YARLPCALTAPLLCAVVKLHTQR*LLRAHY
Trigger: GTAGTGGGCCCGAAGAAGGCACCTTTGTGTGTGCAG...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCTGGGTCATTATCCTCTaGATCTTTAGCTTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVWVIIL*IFSFCR
Trigger: GCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCA...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATACATCAGCCTGGCGCTaGTCCAGGTTCTGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHTSAWR*SRFCCL
Trigger: CAAGCAGCAGAACCTGGAGCAGCGCCAGGCTGATGT...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTTCCTCCTCTTCCCTCTaGCGGTCCTCGTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLSSSSL*RSSSRQ
Trigger: CTGCCTGGACGAGGACCGGCAGAGGGAAGAGGAGGA...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp AGTCACTGCCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATAGCTACTGTGTTTTTCCCGGACCCAGCCTaGTGCAGCGTTCTGCACACA +
Preference number: 4 (lower is better)
Translates to: SHCLGMQKPQSSVIATVFFPDPA*CSVLHT
Trigger: TGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAA...AAACACAGTAGCTATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGGTTCCCGAGCTTTTCTaGGTCTGCTCCTCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMVPELF*VCSSRP
Trigger: AGGCCTGGAGGAGCAGACCCAGAAAAGCTCGGGAAC...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGGGTACTGGTGGGGCTaGCTCTCCTTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FKQAGNKPGQETSQVALFGYWWG*LSFFFL
Trigger: GAGGAAGAAGAAGGAGAGCCAGCCCCACCAGTACCC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTGGGCAGGCGCAGGGCTaGGTACTGGTGGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: MCHLVSPGITLMCSESELGQAQG*VLVGLE
Trigger: CTCCAGCCCCACCAGTACCCAGCCCTGCGCCTGCCC...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCGCAGGGACTTGGGGGTaGCCTCTGACGGGGCAGGCG +
Preference number: 4 (lower is better)
Translates to: FQINPVFPISEGHVAVSCAGTWG*PLTGQA
Trigger: CGCCTGCCCCGTCAGAGGCCACCCCCAAGTCCCTGC...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp GGTTTCCGGTTGAAAGGATTCTCCTTGCAGGAAGACTaGATTTGCAGCTGTGGGGATGCGCTCCCCACGGGA +
Preference number: 4 (lower is better)
Translates to: GFRLKGFSLQED*ICSCGDALPTG
Trigger: TCCCGTGGGGAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCGTCCCGGAAGGAGCTaGTCAGGTCGCGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSIRPGRS*SGRGCP
Trigger: TGGACATCCGCGACCTGAGCAGCTCCTTCCGGGACG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATCCCACAGGCTGCGCATaGGCTGCTCGGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SQLASGALFCLSEPKIKHPTGCA*AARGLL
Trigger: CAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGG...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGCTGCACACACAAAGGTaGCTTCTTCGGGCCCACTAC +
Preference number: 4 (lower is better)
Translates to: NGAYSREQFKPQATSKCWLHTQR*LLRAHY
Trigger: GTAGTGGGCCCGAAGAAGGCACCTTTGTGTGTGCAG...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTCCTGGTGCAGCGTTCTaGACACACAAAGGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: FKQAGNKPGQETSQVALFPGAAF*THKGAF
Trigger: GAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGG...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTCCGGACCCAGCCTGGTaGAGCGTTCTGCACACACAA +
Preference number: 4 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLPDPAW*SVLHTQ
Trigger: TTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGG...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGCACCAATGTGATCCATaGGGGATCCTTCCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: NGAYSREQFKPQATSKCWHQCDP*GILPWR
Trigger: GCGCCAAGGAAGGATCCCCCATGGATCACATTGGTG...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCGGGTACTGGTGGGGCTaGAGATGGGCTGGGTACTGG +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSIGYWWG*RWAGYW
Trigger: CCAGTACCCAGCCCATCTCCAGCCCCACCAGTACCC...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GAGACTACCAAGGGGCACTGGCAACTGAGATACAGTGAGTTCCTTCCCAGGATGTCAGCACCTTCTCTCTaGCCCGATCCTCATCTGTCC +
Preference number: 4 (lower is better)
Translates to: ETTKGHWQLRYSEFLPRMSAPSL*PDPHLS
Trigger: GGACAGATGAGGATCGGGCCAGAGAGAAGGTGCTGA...CATCCTGGGAAGGAACTCACTGTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCGAGAGGTCGTCACCCTaGGCCTCCTCTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: RKVVLFTEIQTFLDTETAERSSP*ASSPGC
Trigger: GCAGCCAGGAGAGGAGGCTCAGGGTGACGACCTCTC...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTGAGAGGTCGTCACCCTaGGCCTCCTCTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: MCHLVSPGITLMCSESELERSSP*ASSPGC
Trigger: GCAGCCAGGAGAGGAGGCTCAGGGTGACGACCTCTC...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp ATGAGCTCCGACTCTCGCCGCACTAGTAGGTGCTTCTCATGGATGAGTTTGAACCTGTCTGCACCAATGTaGTCCATGGGGGATCCTTCC +
Preference number: 4 (lower is better)
Translates to: MSSDSRRTSRCFSWMSLNLSAPM*SMGDPS
Trigger: GGAAGGATCCCCCATGGATCACATTGGTGCAGACAG...GTTCAAACTCATCCATGAGAAGCACCTACTAGTGCGGCGAGAGTCGGAGCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp AATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTTAGGGCTCTTTTCGGGGGTGAGATGGTTTCCGGTTaGAAGGATTCTCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: NSSLRPPVSAGLRALFGGEMVSG*KDSPCR
Trigger: CCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTC...ACCCCCGAAAAGAGCCCTAAGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATATCCGCCAAGTACCGCTaGACCAGGTGCACCCGCTGC +
Preference number: 4 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEISAKYR*TRCTRC
Trigger: GCAGCGGGTGCACCTGGTGCAGCGGTACTTGGCGGA...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGAGGGGTACCAGGCACGTaGACAGCAGGATCCGAGGAG +
Preference number: 4 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGGVPGT*TAGSEE
Trigger: CTCCTCGGATCCTGCTGTGCACGTGCCTGGTACCCC...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCAGGAAGACTTGATTTaGAGCTGTGGGGATGCGCTC +
Preference number: 4 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLQEDLI*SCGDAL
Trigger: GAGCGCATCCCCACAGCTGCAAATCAAGTCTTCCTG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GCCCACTACTGTAAGAGCCTGGGACCAGCGTGCTGGAACACTGCCGACATCGGACGAAGACATTTTCCTTaGAGAGAGATTGGAAGTCGA +
Preference number: 4 (lower is better)
Translates to: AHYCKSLGPACWNTADIGRRHFP*REIGSR
Trigger: TCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCG...TCCGATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCTCTTACAGTAGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR CCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCAGATGGGCTGGGTACTaGTGGGGCTGGCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSRWAGY*WGWLSF
Trigger: GAAGGAGAGCCAGCCCCACCAGTACCCAGCCCATCT...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTTATCCTCCTGTTCCCTCCCAAAGGCTCTGCATTaGCAGTGTGACTGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: FPISEGHVAVSCLSSCSLPKALH*QCDWSS
Trigger: AGAGCTCCAGTCACACTGCCAATGCAGAGCCTTTGG...GAGGGAACAGGAGGATAAGCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp CTCTGCTCAGAAACAGCCAAAGAAGTGTGGGATCTGCAGAGGCCCACTCCTCATCAGGCTTGGCTCCTTTaGTGGCCTTCCTTACAGTTG +
Preference number: 4 (lower is better)
Translates to: LCSETAKEVWDLQRPTPHQAWLL*WPSLQL
Trigger: CAACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTG...ATGAGGAGTGGGCCTCTGCAGATCCCACACTTCTTTGGCTGTTTCTGAGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCGTGGCCTCACAGGCTTaGCTCCTTTGGTGGCCTTCC +
Preference number: 4 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSVASQA*LLWWPS
Trigger: GGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCAC...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp AGTCACTGCCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATAGCTACTGTGTTTTCCTCGGGAATGTACTaGTCAGCCTGGACCTTGCGT +
Preference number: 4 (lower is better)
Translates to: SHCLGMQKPQSSVIATVFSSGMY*SAWTLR
Trigger: ACGCAAGGTCCAGGCTGACCAGTACATTCCCGAGGA...AAACACAGTAGCTATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TTGCTCTTGGCTTCTCGTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTGTCCTCGGAGCTGGCCTaGAGCCTGTCTGCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LLLASRLFPRNFSTFMVLSSELA*SLSASA
Trigger: GGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGA...CAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp AGCCACTGCAGCCACACTCAGGCTTGGGTCATTATCCTCTGCATCTTTAGCTTCCTTGGCCAGAACTGGTaGAGTGGTTGTAGTACTGGG +
Preference number: 4 (lower is better)
Translates to: SHCSHTQAWVIILCIFSFLGQNW*SGCSTG
Trigger: CCCAGTACTACAACCACTTCACCAGTTCTGGCCAAG...GAAGCTAAAGATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR CCA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGGCTGGCTTCTTCTTTaGCTCTGTCTGCACCAATGT +
Preference number: 4 (lower is better)
Translates to: NGAYSREQFKPQATSKCWGWLLL*LCLHQC
Trigger: ACATTGGTGCAGACAGAGCCAAAGAAGAAGCCAGCC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAGGCTGGCTTCTTCTTTaGCTCTGTCTGCACCAATGT +
Preference number: 4 (lower is better)
Translates to: ALLMSQLASGALFCLSEPGWLLL*LCLHQC
Trigger: ACATTGGTGCAGACAGAGCCAAAGAAGAAGCCAGCC...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCCGCAGGGCTGGGTACTaGTGGGGCTGGAGATGGGCT +
Preference number: 4 (lower is better)
Translates to: RPKENTLGYVLEASRTRSRRAGY*WGWRWA
Trigger: AGCCCATCTCCAGCCCCACCAGTACCCAGCCCTGCG...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGGATCCGAGGAGCTCTTaGGTACGGCAGGCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLDPRSS*VRQAAP
Trigger: TGGAGCCGCCTGCCGTACCCAAGAGCTCCTCGGATC...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCCGCTGCCCTTCGTCCTaGCCTGCAGCATTTGTTCAC +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSIRCPSS*PAAFVH
Trigger: GTGAACAAATGCTGCAGGCCAGGACGAAGGGCAGCG...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTATGGAGACCATGTCATTaGGGTCCAAGAGAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLWRPCH*GPREQG
Trigger: TCCCTGCTCTCTTGGACCCCAATGACATGGTCTCCA...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGGACAGCAAGTGAATCTGGAGAGACTACCAAGGGGCACTGGCAACTGAGATACAGTCAGGGACACTCATaGAGACCATGTCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: RTASESGETTKGHWQLRYSQGHS*RPCHWG
Trigger: ACCCCAATGACATGGTCTCCATGAGTGTCCCTGACT...GTATCTCAGTTGCCAGTGCCCCTTGGTAGTCTCTCCAGATTCACTTGCTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp ACCGAGTGTGCGCAGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCGTAGGGCTTGGGCTCTaGCTCAGTTCCCGAGCTTTT +
Preference number: 4 (lower is better)
Translates to: TECAQTKGKHPWICSRSIVGLGL*LSSRAF
Trigger: AAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTAC...GATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCTGCGCACACTCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCTCACAAGGCCACTGCTaGCACTCTGCTCCACCGTGC +
Preference number: 4 (lower is better)
Translates to: RPKENTLGYVLEASRTRSSQGHC*HSAPPC
Trigger: GCACGGTGGAGCAGAGTGTCAGCAGTGGCCTTGTGA...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCCGCTGCCATCCTCTCTaGCAGCTTGGGTGTCCCTCT +
Preference number: 4 (lower is better)
Translates to: RPKENTLGYVLEASRTRSRCHPL*QLGCPS
Trigger: AGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCG...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp ATAAGCAGCTACCTTATTTCCTCTGAGAAGCAAGCCCAACAGGTGGCCCCACTTAGGGTCATGAGTTCCTaGATCAGCACCTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: ISSYLISSEKQAQQVAPLRVMSS*ISTFSL
Trigger: CAGAGAGAAGGTGCTGATGCAGGAACTCATGACCCT...AAGTGGGGCCACCTGTTGGGCTTGCTTCTCAGAGGAAATAAGGTAGCTGCTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TGTCAGCATTTACAACTTGTGCCTGTAGGAGAACTGGATTCTGGATGTCTTCTGGGTGAGGCAGCAGCTTaGCCAGAACTGGTGAAGTGG +
Preference number: 4 (lower is better)
Translates to: CQHLQLVPVGELDSGCLLGEAAA*PELVKW
Trigger: CCACTTCACCAGTTCTGGCCAAGCTGCTGCCTCACC...CAGAAGACATCCAGAATCCAGTTCTCCTACAGGCACAAGTTGTAAATGCTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGAACGGAGGTCCTTTCCTGGTTTaGGTGGTGAGGCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: RNEDSKISLPLGRTRRNGGPFLV*VVRQQL
Trigger: AAGCTGCTGCCTCACCACCCAAACCAGGAAAGGACC...TCCGTTCCTCCTTGTCCTTCCCAGTGGCAAAGATATTTTGGAGTCTTCGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCTTGCGTTTGATGAGTaGAAAGCCGTGTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: FQINPVFPISEGHVAVSCLAFDE*KAVSGG
Trigger: GCCCCCGGACACGGCTTTCCACTCATCAAACGCAAG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCAACTCCACATCAGCCTaGCGCTGCTCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: FQINPVFPISEGHVAVSCNSTSA*RCSRFC
Trigger: GCAGAACCTGGAGCAGCGCCAGGCTGATGTGGAGTT...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR TCA 90 bp TTCAAGCAAGCTGGTAACAAACCCGGGCAGGAAACCAGTCAGGTGGCCCTCTTTGCACCTTTATGGTCTTaGACTTGCCTTTCTTCTTAC +
Preference number: 4 (lower is better)
Translates to: FKQAGNKPGQETSQVALFAPLWS*TCLSSY
Trigger: GTAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGC...AAAGAGGGCCACCTGACTGGTTTCCTGCCCGGGTTTGTTACCAGCTTGCTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR GCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAACCAGGTGCACCCGCTaGCCACAGGCTGCGCATGCG +
Preference number: 4 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRTRCTR*PQAAHA
Trigger: CGCATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGT...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp TGTCCCCATAAATATTTCCTGCACCTGCTGGAAGTTTCCCATAACTCTATTAGAGTCTGCCTCAGCCACTaGAGCCACACTCAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: CPHKYFLHLLEVSHNSIRVCLSH*SHTQAW
Trigger: CCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGAC...TCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATAGGTCCTTTCCTGGTTTaGGTGGTGAGGCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEIGPFLV*VVRQQL
Trigger: AAGCTGCTGCCTCACCACCCAAACCAGGAAAGGACC...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATATTCCCGGACCCAGCCTaGTGCAGCGTTCTGCACACA +
Preference number: 4 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIFPDPA*CSVLHT
Trigger: TGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAA...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCAGCCACACTCAGGCTTaGGTCATTATCCTCTGCATC +
Preference number: 4 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSSHTQA*VIILCI
Trigger: GATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCT...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCCTTGCTGGGAAGAGGTaGCTTGGTTGGGGTGTGGAA +
Preference number: 4 (lower is better)
Translates to: RKVVLFTEIQTFLDTETALAGKR*LGWGVE
Trigger: TTCCACACCCCAACCAAGCCACCTCTTCCCAGCAAG...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCTCAGCTCTTGTCCCCTaGGGCCTTGCTCTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: RPKENTLGYVLEASRTRSSALVP*GLALGF
Trigger: GAAGCCAAGAGCAAGGCCCCAGGGGACAAGAGCTGA...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp ACAGAATCCAAGTGGGCAGGGCTAAGTCACAACTGGTaGGGACACAGGGAAGAAGGAAAAATCTTTAGCCCA +
Preference number: 4 (lower is better)
Translates to: TESKWAGLSHNW*GHREEGKIFSP
Trigger: TGGGCTAAAGATTTTTCCTTCTTCCCTGTGTCCCAACCAGTTGTGACTTAGCCCTGCCCACTTGGATTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCCTTGGCCAGAACTGGTaGAGTGGTTGTAGTACTGGG +
Preference number: 4 (lower is better)
Translates to: RKVVLFTEIQTFLDTETALGQNW*SGCSTG
Trigger: CCCAGTACTACAACCACTTCACCAGTTCTGGCCAAG...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAGGCGTGGATAGCAAGTaGGGAAGCACTGGGTGCTCT +
Preference number: 4 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIGVDSK*GSTGCS
Trigger: AGAGCACCCAGTGCTTCCCCACTTGCTATCCACGCC...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp CATGTTGACAGGACACAGGTGACTATGAGAAAGGTTGTCCTGTTCACTGAGATATCCAGGGCATCCAGCTaGCGCTCAATATTGTCCATC +
Preference number: 4 (lower is better)
Translates to: HVDRTQVTMRKVVLFTEISRASS*RSILSI
Trigger: GATGGACAATATTGAGCGCCAGCTGGATGCCCTGGA...TATCTCAGTGAACAGGACAACCTTTCTCATAGTCACCTGTGTCCTGTCAACATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTTGTCCAGTCCTTTTCTaGCTTGTTGAGAAGGCACCG +
Preference number: 4 (lower is better)
Translates to: MCHLVSPGITLMCSESELCPVLF*LVEKAP
Trigger: CGGTGCCTTCTCAACAAGCCAGAAAAGGACTGGACA...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAATAGGCCTGACTCAGTaGCCCAGGACCACTGCTGGG +
Preference number: 4 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRIGLTQ*PRTTAG
Trigger: CCCAGCAGTGGTCCTGGGCCACTGAGTCAGGCCTAT...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp TTCCCCAGAAACTTCAGCACCTTTATGGTCTTGAACTaGCCTTTCTTCTTACTGTCAGACTCGGCCTCTCTT +
Preference number: 4 (lower is better)
Translates to: FPRNFSTFMVLN*PFFLLSDSASL
Trigger: AAGAGAGGCCGAGTCTGACAGTAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGCTGAAGTTTCTGGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR GCA 90 bp AGACCAAAGGAAAACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCTGGGTCATTATCCTCTaGATCTTTAGCTTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: RPKENTLGYVLEASRTRSWVIIL*IFSFCR
Trigger: GCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCA...GCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTTTTCCTTTGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGACTGTCTGCACCAATGTaGTCCATGGGGGATCCTTCC +
Preference number: 4 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRLSAPM*SMGDPS
Trigger: GGAAGGATCCCCCATGGATCACATTGGTGCAGACAG...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCGAAGACATTTTCCTTaGAGAGAGATTGGAAGTCGA +
Preference number: 4 (lower is better)
Translates to: FQINPVFPISEGHVAVSCRRHFP*REIGSR
Trigger: TCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TGTCCCCATAAATATTTCCTGCACCTGCTGGAAGTTTCCCATAACTCTATTAGAATGTACTGGTCAGCCTaGACCTTGCGTTTGATGAGT +
Preference number: 4 (lower is better)
Translates to: CPHKYFLHLLEVSHNSIRMYWSA*TLRLMS
Trigger: ACTCATCAAACGCAAGGTCCAGGCTGACCAGTACAT...TCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp CTGTCAGACTCGGCCTCTCTTTGGAAATCTTTCTTCTaGATCATAGTTTCCAACATCTTGTCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: LSDSASLWKSFF*IIVSNILSSSS
Trigger: AGAGGAGGAAGACAAGATGTTGGAAACTATGATCAAGAAGAAAGATTTCCAAAGAGAGGCCGAGTCTGACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR TCA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGACTTGGCCAGAACTGGTaGAGTGGTTGTAGTACTGGG +
Preference number: 4 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRLGQNW*SGCSTG
Trigger: CCCAGTACTACAACCACTTCACCAGTTCTGGCCAAG...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp TCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAAAAATTAAACATCGAAGACATTTTCCTTaGAGAGAGATTGGAAGTCGA +
Preference number: 4 (lower is better)
Translates to: SQLASGALFCLSEPKIKHRRHFP*REIGSR
Trigger: TCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCG...ATGTTTAATTTTTGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CCA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAAGTAGGTGCTTCTCATaGATGAGTTTGAACCAGTCC +
Preference number: 4 (lower is better)
Translates to: NTLGYVLEASRTRSNHLISRCFS*MSLNQS
Trigger: GGACTGGTTCAAACTCATCCATGAGAAGCACCTACT...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
3UTR CAA 72 bp CTTGCCTTTCTTCTTACTGTCAGACTCGGCCTCTCTTaGGAAATCTTTCTTCTTGATCATAGTTTCCAACAT +
Preference number: 4 (lower is better)
Translates to: LAFLLTVRLGLS*EIFLLDHSFQH
Trigger: ATGTTGGAAACTATGATCAAGAAGAAAGATTTCCAAAGAGAGGCCGAGTCTGACAGTAAGAAGAAAGGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS GCA 90 bp AGGTGCACCCGCTGCCCACAGGCTGCGCATGCGCTGCTCGGGGGCTaGTGTTTGCCCTGCTCGGACAGGCTGTCTGGGGAGAGGTCGTCA +
Preference number: 5 (lower is better)
Translates to: RCTRCPQAAHALLGG*CLPCSDRLSGERSS
Trigger: TGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGCAGCGGGTGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 90 bp TGCGCTGCTCGGGGGCTGCTGTTTGCCCTGCTCGGACAGGCTGTCTaGGGAGAGGTCGTCACCCTGAGCCTCCTCTCCTGGCTGCACAGC +
Preference number: 5 (lower is better)
Translates to: CAARGLLFALLGQAV*GEVVTLSLLSWLHS
Trigger: GCTGTGCAGCCAGGAGAGGAGGCTCAGGGTGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS TCA 90 bp TGTTTGCCCTGCTCGGACAGGCTGTCTGGGGAGAGGTCGTCACCCTaGGCCTCCTCTCCTGGCTGCACAGCGGGTGATGTGGATGTGGGG +
Preference number: 5 (lower is better)
Translates to: CLPCSDRLSGERSSP*ASSPGCTAGDVDVG
Trigger: CCCCACATCCACATCACCCGCTGTGCAGCCAGGAGAGGAGGCTCAGGGTGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GCCCACAGGCTGCGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTGCTCGGACAATGGAGACCATGTCATaGGGGTCCAAGAGAGCAGGG +
Preference number: 5 (lower is better)
Translates to: AHRLRMRCSGAAVCPARTMETMS*GSKRAG
Trigger: CCCTGCTCTCTTGGACCCCAATGACATGGTCTCCAT...TGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR CAA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCCTCGGGGGCTGCTGTTaGCCCTGCTCGGACAGGCTG +
Preference number: 5 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVLGGCC*PCSDRL
Trigger: CAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAG...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 90 bp TGGGAAGAGGTGGCTTGGTTGGGGTGTGGAACTGTACCTCGGAGCTaGCCTGGAGCCTGTCTGCCTCAGCCACTGCAGCCACACTCAGGC +
Preference number: 5 (lower is better)
Translates to: WEEVAWLGCGTVPRS*PGACLPQPLQPHSG
Trigger: GCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCACCTCTTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 90 bp GGCCTGGAGCCTGTCTGCCTCAGCCACTGCAGCCACACTCAGGCTTaGGTCATTATCCTCTGCATCTTTAGCTTCTGCCGCCGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: GLEPVCLSHCSHTQA*VIILCIFSFCRRWL
Trigger: CAGCCAGCGGCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGCTCCTCGCTGCCCTCATTaGCTCCGCCACGCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: GAYSREQFKPQATSKCWAPRCPH*LRHAAS
Trigger: AGAAGCTGCGTGGCGGAGCAAATGAGGGCAGCGAGG...AGCCCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS TCA 90 bp CAATGTGATCCATGGGGGATCCTTCCTTGGCGCTGCCATCCTCTCTaGCAGCTTGGGTGTCCCTCTTGGCTTGGGAACAGGCGGTTCCTG +
Preference number: 5 (lower is better)
Translates to: QCDPWGILPWRCHPL*QLGCPSWLGNRRFL
Trigger: CAGGAACCGCCTGTTCCCAAGCCAAGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCGCCAAGGAAGGATCCCCCATGGATCACATTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GACTGCCAACCCGGCACAACAGCCAGAACCAGTGCCCTTCACTCTGCCACACAGATGGAGACCATGTCATaGGGGTCCAAGAGAGCAGGG +
Preference number: 5 (lower is better)
Translates to: DCQPGTTARTSALHSATQMETMS*GSKRAG
Trigger: CCCTGCTCTCTTGGACCCCAATGACATGGTCTCCAT...CTGTGTGGCAGAGTGAAGGGCACTGGTTCTGGCTGTTGTGCCGGGTTGGCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp CTGAGATACAAACTTTCCTTGACACAGAGACAGCCTGGTAGAGCCCTCTCCTGGCTCGGGGGCTGCTGTTaGCCCTGCTCGGACAGGCTG +
Preference number: 5 (lower is better)
Translates to: LRYKLSLTQRQPGRALSWLGGCC*PCSDRL
Trigger: CAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAG...CCAGGAGAGGGCTCTACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGGGTCCTTTCCTGGTTaGGGTGGTGAGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: YARLPCALTAPLLCAVVKGSFPG*GGEAAA
Trigger: AGCTGCTGCCTCACCACCCAAACCAGGAAAGGACCC...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCCAGCCACACTCAGGCTaGGGTCATTATCCTCTGCAT +
Preference number: 5 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVQPHSG*GHYPLH
Trigger: ATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTG...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp AGCTGGAGACCATGGAGGAGGGGAAAAGTCACCCAGAGACTCCCTCCCACGGTCACAGGCTTGGCTCCTTaGGTGGCCTTCCTTACAGTT +
Preference number: 5 (lower is better)
Translates to: SWRPWRRGKVTQRLPPTVTGLAP*VAFLTV
Trigger: AACTGTAAGGAAGGCCACCAAAGGAGCCAAGCCTGT...GACCGTGGGAGGGAGTCTCTGGGTGACTTTTCCCCTCCTCCATGGTCTCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGGTGGCCTCACAGGCTaGGCTCCTTTGGTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: NGAYSREQFKPQATSKCWGGLTG*APLVAF
Trigger: GAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp AGTCACTGCCTGGGGATGCAGAAGCCGCAGAGTAGTGTCATAGCTACTGTGTTTCTCCACCGTGCCATCTaGCTGCAGGCTAGACCGAGG +
Preference number: 5 (lower is better)
Translates to: SHCLGMQKPQSSVIATVFLHRAI*LQARPR
Trigger: CCTCGGTCTAGCCTGCAGCAAGATGGCACGGTGGAG...AAACACAGTAGCTATGACACTACTCTGCGGCTTCTGCATCCCCAGGCAGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GCTCTCCTGATGTCACAGCTGGCCTCAGGTGCTCTGTTTTGCCTTTCTGAACCAGGTGTCCCTCTTGGCTaGGGAACAGGCGGTTCCTGT +
Preference number: 5 (lower is better)
Translates to: ALLMSQLASGALFCLSEPGVPLG*GTGGSC
Trigger: ACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACACC...TGGTTCAGAAAGGCAAAACAGAGCACCTGAGGCCAGCTGTGACATCAGGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp CACACAGCACCCATCCCAGGCCTGCCCACCCATGGGGGCTGGGCCACGCCAGATTTTATGGTCTTGAACTaGCCTTTCTTCTTACTGTCA +
Preference number: 5 (lower is better)
Translates to: HTAPIPGLPTHGGWATPDFMVLN*PFFLLS
Trigger: TGACAGTAAGAAGAAAGGCAAGTTCAAGACCATAAA...ATCTGGCGTGGCCCAGCCCCCATGGGTGGGCAGGCCTGGGATGGGTGCTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TATGCACGCCTACCCTGTGCATTGACAGCCCCTCTCCTCTGTGCAGTGGTGAAAGGGCTGGCTTCTTCTTaGGCTCTGTCTGCACCAATG +
Preference number: 5 (lower is better)
Translates to: YARLPCALTAPLLCAVVKGLASS*ALSAPM
Trigger: CATTGGTGCAGACAGAGCCAAAGAAGAAGCCAGCCC...TTTCACCACTGCACAGAGGAGAGGGGCTGTCAATGCACAGGGTAGGCGTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTCAGGGGTGCAGGGACTaGGGGGTGGCCTCTGACGGG +
Preference number: 5 (lower is better)
Translates to: MCHLVSPGITLMCSESELQGCRD*GVASDG
Trigger: CCCGTCAGAGGCCACCCCCAAGTCCCTGCACCCCTG...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TTCCCGGACCCAGCCTGGTGCAGCGTTCTGCACACACAAAGGTGCCTTCTTCGGTCGAAGACATTTTCCTaGGAGAGAGATTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: FPDPAWCSVLHTQRCLLRSKTFS*ERDWKS
Trigger: CGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGA...CCGAAGAAGGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229004.2
CDS-3UTR CAA 90 bp GAGCCCCAGCCAGCACCAGGACAGTTAGCTAGATGTCTAGGGTGTCCTGCCTGCTCGAAGACATTTTCCTaGGAGAGAGATTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: EPQPAPGQLARCLGCPACSKTFS*ERDWKS
Trigger: CGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGA...GCAGGCAGGACACCCTAGACATCTAGCTAACTGTCCTGGTGCTGGCTGGGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp AATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGGCCACCAGTAAGTGCTGGGAAGAGGTGGCTTGGTaGGGGTGTGGAACTGTACCT +
Preference number: 5 (lower is better)
Translates to: NGAYSREQFKPQATSKCWEEVAW*GCGTVP
Trigger: AGGTACAGTTCCACACCCCAACCAAGCCACCTCTTC...CCAGCACTTACTGGTGGCCTGAGGCTTGAATTGTTCACGACTGTACGCCCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCTTGAAAGGATTCTCCTaGCAGGAAGACTTGATTTGC +
Preference number: 5 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPLKGFS*QEDLIC
Trigger: GCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAA...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGAGGAGCATCCTTTTCTGGCTTGTaGAGAAGGCACCGGAGCTCG +
Preference number: 5 (lower is better)
Translates to: VALCRNYGKWRTLIAGGASFSGL*RRHRSS
Trigger: CGAGCTCCGGTGCCTTCTCAACAAGCCAGAAAAGGA...TGCTCCTCCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GAAGCAAGCCCAACAGGTGGCCCCACTTGCTCCTTGTGTTCCCAGGAGGAGCCCAGACTCGGCCTCTCTTaGGAAATCTTTCTTCTTGAT +
Preference number: 5 (lower is better)
Translates to: EASPTGGPTCSLCSQEEPRLGLS*EIFLLD
Trigger: ATCAAGAAGAAAGATTTCCAAAGAGAGGCCGAGTCT...GGGCTCCTCCTGGGAACACAAGGAGCAAGTGGGGCCACCTGTTGGGCTTGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCGGGTCCTTTCCTGGTTaGGGTGGTGAGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSGSFPG*GGEAAA
Trigger: AGCTGCTGCCTCACCACCCAAACCAGGAAAGGACCC...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GGAAAACCCAGGACAAGTGTAGCCCACTGTGACAAACTCAACTTTGATGTCAGCATGGGGGATCCTTCCTaGGCGCTGCCATCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: GKPRTSVAHCDKLNFDVSMGDPS*ALPSSL
Trigger: CAGAGAGGATGGCAGCGCCAAGGAAGGATCCCCCAT...GCTGACATCAAAGTTGAGTTTGTCACAGTGGGCTACACTTGTCCTGGGTTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp CTTTCTGGTGGCTCTCTGCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGTTGTCCCCTGGGGCCTaGCTCTTGGCTTCTCGTTTA +
Preference number: 5 (lower is better)
Translates to: LSGGSLQKLREMEDIDRRLSPGA*LLASRL
Trigger: TAAACGAGAAGCCAAGAGCAAGGCCCCAGGGGACAA...CCTGCGATCAATGTCCTCCATTTCCCGTAGTTTCTGCAGAGAGCCACCAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TACCCCACCTGGTACACTGCACATCAGTGTCCTTTCTTTGGGCTGTTGACACTAGCCTGGACCTTGCGTTaGATGAGTGGAAAGCCGTGT +
Preference number: 5 (lower is better)
Translates to: YPTWYTAHQCPFFGLLTLAWTLR*MSGKPC
Trigger: ACACGGCTTTCCACTCATCAAACGCAAGGTCCAGGC...TAGTGTCAACAGCCCAAAGAAAGGACACTGATGTGCAGTGTACCAGGTGGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCGGTGTCCCTCTTGGCTaGGGAACAGGCGGTTCCTGT +
Preference number: 5 (lower is better)
Translates to: FQINPVFPISEGHVAVSCGVPLG*GTGGSC
Trigger: ACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACACC...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp ATGTGCCACCTTGTTTCCCCAGGGATAACACTTATGTGTTCGGAATCAGAACTTGCACCACTGAAGGGCTaGGTAGAATGGGTACCCGCG +
Preference number: 5 (lower is better)
Translates to: MCHLVSPGITLMCSESELAPLKG*VEWVPA
Trigger: CGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGC...AAGTTCTGATTCCGAACACATAAGTGTTATCCCTGGGGAAACAAGGTGGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp CTGAGATACAAACTTTCCTTGACACAGAGACAGCCTGGTAGAGCCCTCTCCTGGGGAGATGGTTTCCGGTaGAAAGGATTCTCCTTGCAG +
Preference number: 5 (lower is better)
Translates to: LRYKLSLTQRQPGRALSWGDGFR*KGFSLQ
Trigger: CTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCC...CCAGGAGAGGGCTCTACCAGGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 90 bp GGACACTCATGGAGACCATGTCATTGGGGTCCAAGAGAGCAGGGATaGCCAGTTCCTTTTCAGCCACTTCAAAGGCCAATCGATTATTCT +
Preference number: 5 (lower is better)
Translates to: GHSWRPCHWGPREQG*PVPFQPLQRPIDYS
Trigger: AGAATAATCGATTGGCCTTTGAAGTGGCTGAAAAGGAACTGGGCATCCCTGCTCTCTTGGACCCCAATGACATGGTCTCCATGAGTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040320.10
ENSMUST00000229004.2
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp TGTCCCCATAAATATTTCCTGCACCTGCTGGAAGTTTCCCATAACTCTATTAGAGCCAGTTCCTGGGGCTaGCTGGGAAGAGGTGGCTTG +
Preference number: 5 (lower is better)
Translates to: CPHKYFLHLLEVSHNSIRASSWG*LGRGGL
Trigger: CAAGCCACCTCTTCCCAGCAAGCCCCAGGAACTGGC...TCTAATAGAGTTATGGGAAACTTCCAGCAGGTGCAGGAAATATTTATGGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCCCTGGGGCCTTGCTCTaGGCTTCTCGTTTATTCCCC +
Preference number: 5 (lower is better)
Translates to: FQINPVFPISEGHVAVSCPGALL*ASRLFP
Trigger: GGGGAATAAACGAGAAGCCAAGAGCAAGGCCCCAGG...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TTGCTCTTGGCTTCTCGTTTATTCCCCAGAAACTTCAGCACCTTTATGGTCTTGCAGCCACACTCAGGCTaGGGTCATTATCCTCTGCAT +
Preference number: 5 (lower is better)
Translates to: LLLASRLFPRNFSTFMVLQPHSG*GHYPLH
Trigger: ATGCAGAGGATAATGACCCAAGCCTGAGTGTGGCTG...CAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCTGGTCAGCCTGGACCTaGCGTTTGATGAGTGGAAAG +
Preference number: 5 (lower is better)
Translates to: RKVVLFTEIQTFLDTETAWSAWT*RLMSGK
Trigger: CTTTCCACTCATCAAACGCAAGGTCCAGGCTGACCA...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp AACACCCTTGGATATGTTCTAGAAGCATCAAGAACAAGGAGCAACCACCTAATAGGGCTGGCTTCTTCTTaGGCTCTGTCTGCACCAATG +
Preference number: 5 (lower is better)
Translates to: NTLGYVLEASRTRSNHLIGLASS*ALSAPM
Trigger: CATTGGTGCAGACAGAGCCAAAGAAGAAGCCAGCCC...TATTAGGTGGTTGCTCCTTGTTCTTGATGCTTCTAGAACATATCCAAGGGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGAATGGGGGATCCTTCCTaGGCGCTGCCATCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRMGDPS*ALPSSL
Trigger: CAGAGAGGATGGCAGCGCCAAGGAAGGATCCCCCAT...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGACCTGGCCTGCAGCATTaGTTCACCACTAGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRPGLQH*FTTRLP
Trigger: GGGCAGCCTAGTGGTGAACAAATGCTGCAGGCCAGG...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp TTTCAAATTAATCCAGTTTTCCCAATCTCAGAGGGACATGTGGCTGTCAGCTGCTCGAAGACATTTTCCTaGGAGAGAGATTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: FQINPVFPISEGHVAVSCSKTFS*ERDWKS
Trigger: CGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGA...GCAGCTGACAGCCACATGTCCCTCTGAGATTGGGAAAACTGGATTAATTTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS-3UTR CAA 90 bp AGAAAGGTTGTCCTGTTCACTGAGATACAAACTTTCCTTGACACAGAGACAGCCAGCACCTTTATGGTCTaGAACTTGCCTTTCTTCTTA +
Preference number: 5 (lower is better)
Translates to: RKVVLFTEIQTFLDTETASTFMV*NLPFFL
Trigger: TAAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGCT...GGCTGTCTCTGTGTCAAGGAAAGTTTGTATCTCAGTGAACAGGACAACCTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS-3UTR CAA 90 bp GAAGTTTCCCATAACTCTATTAGAACATATGACCTGTGTTCTTGTCCTAATAGATCCTTGCAGGAAGACTaGATTTGCAGCTGTGGGGAT +
Preference number: 5 (lower is better)
Translates to: EVSHNSIRTYDLCSCPNRSLQED*ICSCGD
Trigger: ATCCCCACAGCTGCAAATCAAGTCTTCCTGCAAGGA...TCTATTAGGACAAGAACACAGGTCATATGTTCTAATAGAGTTATGGGAAACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 72 bp GCTGCGCATGCGCTGCTCGGGGGCTGCTGTTTGCCCTaGTCGGACAGGCTGTCTGGGGAGAGGTCGTCACCC +
Preference number: 6 (lower is better)
Translates to: AAHALLGGCCLP*SDRLSGERSSP
Trigger: GGGTGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 72 bp GGTGTGGGCCGGCCACCAGGGGGACTGGCCAGTTCCTaGGGCTTGCTGGGAAGAGGTGGCTTGGTTGGGGTG +
Preference number: 6 (lower is better)
Translates to: GVGRPPGGLASS*GLLGRGGLVGV
Trigger: CACCCCAACCAAGCCACCTCTTCCCAGCAAGCCCCAGGAACTGGCCAGTCCCCCTGGTGGCCGGCCCACACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 72 bp AGGCTGAACTCTCGGAAGCCTTCCTGGGGGCAGGTGTaGGCCGGCCACCAGGGGGACTGGCCAGTTCCTGGG +
Preference number: 6 (lower is better)
Translates to: RLNSRKPSWGQV*AGHQGDWPVPG
Trigger: CCCAGGAACTGGCCAGTCCCCCTGGTGGCCGGCCCACACCTGCCCCCAGGAAGGCTTCCGAGAGTTCAGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 72 bp CACAGGCTGCGCATGCGCTGCTCGGGGGCTGCTGTTTaGCCTGCTCGGACAGGCTGTCTGGGGAGAGGTCGT +
Preference number: 6 (lower is better)
Translates to: HRLRMRCSGAAV*PARTGCLGRGR
Trigger: ACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCGCATGCGCAGCCTGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 72 bp CGGGGGCTGCTGTTTGCCCTGCTCGGACAGGCTGTCTaGGGAGAGGTCGTCACCCTGAGCCTCCTCTCCTGG +
Preference number: 6 (lower is better)
Translates to: RGLLFALLGQAV*GEVVTLSLLSW
Trigger: CCAGGAGAGGAGGCTCAGGGTGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS GCA 72 bp GTGGAACTGTACCTCGGAGCTGGCCTGGAGCCTGTCTaGCTCAGCCACTGCAGCCACACTCAGGCTTGGGTC +
Preference number: 6 (lower is better)
Translates to: VELYLGAGLEPV*LSHCSHTQAWV
Trigger: GACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGTACAGTTCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 72 bp AGGCCACTGCTGACACTCTGCTCCACCGTGCCATCTTaGTGCAGGCTAGACCGAGGCCTTGGCGTTGGGGGA +
Preference number: 6 (lower is better)
Translates to: RPLLTLCSTVPS*CRLDRGLGVGG
Trigger: TCCCCCAACGCCAAGGCCTCGGTCTAGCCTGCAGCAAGATGGCACGGTGGAGCAGAGTGTCAGCAGTGGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 72 bp CCTGTAGTCTTCCTCGGAGCTGGCCTGGAGCCTGTCTaGCTCAGCCACTGCAGCCACACTCAGGCTTGGGTC +
Preference number: 6 (lower is better)
Translates to: PVVFLGAGLEPV*LSHCSHTQAWV
Trigger: GACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGAAGACTACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS CAA 72 bp AAGGCCACTGCTGACACTCTGCTCCACCGTGCCATCTaGCTGCAGGCTAGACCGAGGCCTTGGCGTTGGGGG +
Preference number: 6 (lower is better)
Translates to: KATADTLLHRAI*LQARPRPWRWG
Trigger: CCCCCAACGCCAAGGCCTCGGTCTAGCCTGCAGCAAGATGGCACGGTGGAGCAGAGTGTCAGCAGTGGCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS GCA 72 bp CTCGGAGCTGGCCTGGAGCCTGTCTGCCTCAGCCACTaGAGCCACACTCAGGCTTGGGTCATTATCCTCTGC +
Preference number: 6 (lower is better)
Translates to: LGAGLEPVCLSH*SHTQAWVIILC
Trigger: GCAGAGGATAATGACCCAAGCCTGAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 72 bp TTGGTTGGGGTGTGGAACTGTACCTCGGAGCTGGCCTaGAGCCTGTCTGCCTCAGCCACTGCAGCCACACTC +
Preference number: 6 (lower is better)
Translates to: LVGVWNCTSELA*SLSASATAATL
Trigger: GAGTGTGGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 72 bp TGGGGCTTGCTGGGAAGAGGTGGCTTGGTTGGGGTGTaGAACTGTACCTCGGAGCTGGCCTGGAGCCTGTCT +
Preference number: 6 (lower is better)
Translates to: WGLLGRGGLVGV*NCTSELAWSLS
Trigger: AGACAGGCTCCAGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCACCTCTTCCCAGCAAGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 72 bp CAGTTCCTGGGGCTTGCTGGGAAGAGGTGGCTTGGTTaGGGTGTGGAACTGTACCTCGGAGCTGGCCTGGAG +
Preference number: 6 (lower is better)
Translates to: QFLGLAGKRWLG*GVELYLGAGLE
Trigger: CTCCAGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCACCTCTTCCCAGCAAGCCCCAGGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 72 bp TGGCCAGTTCCTGGGGCTTGCTGGGAAGAGGTGGCTTaGTTGGGGTGTGGAACTGTACCTCGGAGCTGGCCT +
Preference number: 6 (lower is better)
Translates to: WPVPGACWEEVA*LGCGTVPRSWP
Trigger: AGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCACCTCTTCCCAGCAAGCCCCAGGAACTGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CCA 72 bp GGGACTGGCCAGTTCCTGGGGCTTGCTGGGAAGAGGTaGCTTGGTTGGGGTGTGGAACTGTACCTCGGAGCT +
Preference number: 6 (lower is better)
Translates to: GTGQFLGLAGKR*LGWGVELYLGA
Trigger: AGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCACCTCTTCCCAGCAAGCCCCAGGAACTGGCCAGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS TCA 72 bp CCATGGGGGATCCTTCCTTGGCGCTGCCATCCTCTCTaGCAGCTTGGGTGTCCCTCTTGGCTTGGGAACAGG +
Preference number: 6 (lower is better)
Translates to: PWGILPWRCHPL*QLGCPSWLGNR
Trigger: CCTGTTCCCAAGCCAAGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCGCCAAGGAAGGATCCCCCATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CCA 72 bp GATCCTTCCTTGGCGCTGCCATCCTCTCTGACAGCTTaGGTGTCCCTCTTGGCTTGGGAACAGGCGGTTCCT +
Preference number: 6 (lower is better)
Translates to: DPSLALPSSLTA*VSLLAWEQAVP
Trigger: AGGAACCGCCTGTTCCCAAGCCAAGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCGCCAAGGAAGGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040320.10
ENSMUST00000229031.2
CDS CAA 72 bp GCGCTGCCATCCTCTCTGACAGCTTGGGTGTCCCTCTaGGCTTGGGAACAGGCGGTTCCTGTAGTCTTCCGT +
Preference number: 6 (lower is better)
Translates to: ALPSSLTAWVSL*AWEQAVPVVFR
Trigger: ACGGAAGACTACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040320.10
CDS CAA 72 bp GCGCTGCCATCCTCTCTGACAGCTTGGGTGTCCCTCTaGGCTTGGGAACAGGCGGTTCCTGTAGTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: ALPSSLTAWVSL*AWEQAVPVVFL
Trigger: GAGGAAGACTACAGGAACCGCCTGTTCCCAAGCCAAGAGGGACACCCAAGCTGTCAGAGAGGATGGCAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229031.2
CDS CAA 90 bp TCAGCCACTTCAAAGGCCAATCGATTATTCTCGAAGACATTTTCCTaGGAGAGAGATTGGAAGTCGAGCAGGTCGGGCCGGTGCCGGTGC +
Preference number: 6 (lower is better)
Translates to: SATSKANRLFSKTFS*ERDWKSSRSGRCRC
Trigger: GCACCGGCACCGGCCCGACCTGCTCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGAGAATAATCGATTGGCCTTTGAAGTGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040320.10
ENSMUST00000229004.2
ENSMUST00000229031.2
CDS GCA 72 bp TGGAGACCATGTCATTGGGGTCCAAGAGAGCAGGGATaGCCAGTTCCTTTTCAGCCACTTCAAAGGCCAATC +
Preference number: 6 (lower is better)
Translates to: WRPCHWGPREQG*PVPFQPLQRPI
Trigger: GATTGGCCTTTGAAGTGGCTGAAAAGGAACTGGGCATCCCTGCTCTCTTGGACCCCAATGACATGGTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040320.10
ENSMUST00000229004.2
ENSMUST00000229031.2
CDS CCA 72 bp CAAAGGCCAATCGATTATTCTCGAAGACATTTTCCTTaGAGAGAGATTGGAAGTCGAGCAGGTCGGGCCGGT +
Preference number: 6 (lower is better)
Translates to: QRPIDYSRRHFP*REIGSRAGRAG
Trigger: ACCGGCCCGACCTGCTCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGAGAATAATCGATTGGCCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040320.10
ENSMUST00000229004.2
ENSMUST00000229031.2