Pregenerated sensors for MIA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089661Ensembl transcript IDs: ENSMUST00000071986.13, ENSMUST00000121848.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCCCCGGACAATGCTACTaGGGAAATAGCCCAGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGPGQCY*GNSPGG Trigger: CCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGG...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCATAGCCCAGGCGGGCTaGCAGGTCTCCATAGTAACC | + |
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Preference number: 4 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGIAQAG*QVSIVT Trigger: GGTTACTATGGAGACCTGGCAGCCCGCCTGGGCTAT...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGAACCTCCCTGAACACTaGCTCCCCAGAAAAGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: CHWLLYLHRAGRVTAGIANLPEH*LPRKGA Trigger: GGCGCCTTTTCTGGGGAGGCAGTGTTCAGGGAGGTT...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGATAGCCCAGGCGGGCTaGCAGGTCTCCATAGTAACC | + |
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Preference number: 4 (lower is better) Translates to: CHWLLYLHRAGRVTAGIAIAQAG*QVSIVT Trigger: GGTTACTATGGAGACCTGGCAGCCCGCCTGGGCTAT...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR TCA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCAGCCCTGCTAGGCCCTaGAAAAACAGACAAGACGAC | + |
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Preference number: 4 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGSPARP*KNRQDD Trigger: GTCGTCTTGTCTGTTTTTTCAGGGCCTAGCAGGGCT...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | CATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAAACCTCCCTGAACACTaGCTCCCCAGAAAAGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: HWLLYLHRAGRVTAGIAVNLPEH*LPRKGA Trigger: GGCGCCTTTTCTGGGGAGGCAGTGTTCAGGGAGGTT...TACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CCA 90 bp | GTTTGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATACCCGGACAATGCTACTaGGGAAATAGCCCAGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: VCHWLLYLHRAGRVTAGIPGQCY*GNSPGG Trigger: CCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGG...TATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCAAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071986.13 |
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| CDS-3UTR TCA 90 bp | CATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAAGCCCTGCTAGGCCCTaGAAAAACAGACAAGACGAC | + |
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Preference number: 4 (lower is better) Translates to: HWLLYLHRAGRVTAGIAVSPARP*KNRQDD Trigger: GTCGTCTTGTCTGTTTTTTCAGGGCCTAGCAGGGCT...TACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | GTTTGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGGTCCTCCCGGACAATaGTACTGGGGAAATAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VCHWLLYLHRAGRVTAGIGPPGQ*YWGNSP Trigger: TGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACC...TATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071986.13 |
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| CDS-3UTR CCA 90 bp | CATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTACACGGCCCTTCAACTTaGAGAAGACATACACCACTT | + |
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Preference number: 4 (lower is better) Translates to: HWLLYLHRAGRVTAGIAVHGPST*RRHTPL Trigger: AAGTGGTGTATGTCTTCTCCAAGTTGAAGGGCCGTG...TACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CCA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCAAGACATACACCACTTaGCCCCTATATATAGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGKTYTT*PLYIVK Trigger: CTTGACTATATATAGGGGCCAAGTGGTGTATGTCTT...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CCA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGAAGACATACACCACTTaGCCCCTATATATAGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: CHWLLYLHRAGRVTAGIAKTYTT*PLYIVK Trigger: CTTGACTATATATAGGGGCCAAGTGGTGTATGTCTT...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR GCA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGTCTTCATATCAATTTTaGCAGGTTTCAGAGTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: CHWLLYLHRAGRVTAGIASSYQF*QVSESG Trigger: ACCTGACTCTGAAACCTGGCAAAATTGATATGAAGA...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS GCA 90 bp | CAGGTCCTCCCGGACAATGCTACTGGGGAAATAGCCCAGGCGGGCTaGCAGGTCTCCATAGTAACCTCCCTGAACACTGCCTCCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: QVLPDNATGEIAQAG*QVSIVTSLNTASPE Trigger: TTCTGGGGAGGCAGTGTTCAGGGAGGTTACTATGGAGACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS TCA 90 bp | CCAGTCAGCCAGCTTGGGCATAGCTCGATCAGCCCTGCTAGGCCCTaGAAAAACAGACAAGACGACGATGCCAAGGAGCACTGGGGACCA | + |
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Preference number: 5 (lower is better) Translates to: PVSQLGHSSISPARP*KNRQDDDAKEHWGP Trigger: TGGTCCCCAGTGCTCCTTGGCATCGTCGTCTTGTCTGTTTTTTCAGGGCCTAGCAGGGCTGATCGAGCTATGCCCAAGCTGGCTGACTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCTTCCAGTCAGCCAGCTaGGGCATAGCTCGATCAGCC | + |
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Preference number: 5 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGFQSAS*GIARSA Trigger: GGCTGATCGAGCTATGCCCAAGCTGGCTGACTGGAA...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS CCA 90 bp | CAATTTTGCCAGGTTTCAGAGTCAGGTCCTCCCGGACAATGCTACTaGGGAAATAGCCCAGGCGGGCTGCCAGGTCTCCATAGTAACCTC | + |
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Preference number: 5 (lower is better) Translates to: QFCQVSESGPPGQCY*GNSPGGLPGLHSNL Trigger: GAGGTTACTATGGAGACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTGACTCTGAAACCTGGCAAAATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | CATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTATTCCAGTCAGCCAGCTaGGGCATAGCTCGATCAGCC | + |
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Preference number: 5 (lower is better) Translates to: HWLLYLHRAGRVTAGIAVFQSAS*GIARSA Trigger: GGCTGATCGAGCTATGCCCAAGCTGGCTGACTGGAA...TACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCCCACGGCCCTTCAACTaGGAGAAGACATACACCACT | + |
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Preference number: 5 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGPRPFN*EKTYTT Trigger: AGTGGTGTATGTCTTCTCCAAGTTGAAGGGCCGTGG...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS GCA 90 bp | TCATATCAATTTTGCCAGGTTTCAGAGTCAGGTCCTCCCGGACAATaGTACTGGGGAAATAGCCCAGGCGGGCTGCCAGGTCTCCATAGT | + |
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Preference number: 5 (lower is better) Translates to: SYQFCQVSESGPPGQ*YWGNSPGGLPGLHS Trigger: ACTATGGAGACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTGACTCTGAAACCTGGCAAAATTGATATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGCCACGGCCCTTCAACTaGGAGAAGACATACACCACT | + |
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Preference number: 5 (lower is better) Translates to: CHWLLYLHRAGRVTAGIAPRPFN*EKTYTT Trigger: AGTGGTGTATGTCTTCTCCAAGTTGAAGGGCCGTGG...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | TGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGTAGGCGTCTTCATATCAATTTaGCCAGGTTTCAGAGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: WLLYLHRAGRVTAGIAVGVFISI*PGFRVR Trigger: CCTGACTCTGAAACCTGGCAAAATTGATATGAAGAC...GCCTACCGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | TGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGCGGAAGACATACACCACTaGGCCCCTATATATAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: CHWLLYLHRAGRVTAGIAEDIHH*APIYSQ Trigger: TTGACTATATATAGGGGCCAAGTGGTGTATGTCTTC...CGCTATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS-3UTR CAA 90 bp | GTTTGCCATTGGCTGCTGTATTTGCATAGAGCCGGAAGGGTAACTGCAGGGATAGTCTTCATATCAATTTaGCCAGGTTTCAGAGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: VCHWLLYLHRAGRVTAGIVFISI*PGFRVR Trigger: CCTGACTCTGAAACCTGGCAAAATTGATATGAAGAC...TATCCCTGCAGTTACCCTTCCGGCTCTATGCAAATACAGCAGCCAATGGCAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071986.13 |
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| CDS GCA 72 bp | CCGGACAATGCTACTGGGGAAATAGCCCAGGCGGGCTaGCAGGTCTCCATAGTAACCTCCCTGAACACTGCC | + |
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Preference number: 6 (lower is better) Translates to: PDNATGEIAQAG*QVSIVTSLNTA Trigger: GGCAGTGTTCAGGGAGGTTACTATGGAGACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS CCA 72 bp | CAGGTTTCAGAGTCAGGTCCTCCCGGACAATGCTACTaGGGAAATAGCCCAGGCGGGCTGCCAGGTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: QVSESGPPGQCY*GNSPGGLPGLH Trigger: ATGGAGACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTGACTCTGAAACCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS CAA 72 bp | CATTCCTCGTCCGCACACAGCTTCCAGTCAGCCAGCTaGGGCATAGCTCGATCAGCCCTGCTAGGCCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: HSSSAHSFQSAS*GIARSALLGPE Trigger: TTCAGGGCCTAGCAGGGCTGATCGAGCTATGCCCAAGCTGGCTGACTGGAAGCTGTGTGCGGACGAGGAATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS GCA 72 bp | TTTTGCCAGGTTTCAGAGTCAGGTCCTCCCGGACAATaGTACTGGGGAAATAGCCCAGGCGGGCTGCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: FCQVSESGPPGQ*YWGNSPGGLPG Trigger: ACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTGACTCTGAAACCTGGCAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS TCA 72 bp | CAGCTTGGGCATAGCTCGATCAGCCCTGCTAGGCCCTaGAAAAACAGACAAGACGACGATGCCAAGGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: QLGHSSISPARP*KNRQDDDAKEH Trigger: GTGCTCCTTGGCATCGTCGTCTTGTCTGTTTTTTCAGGGCCTAGCAGGGCTGATCGAGCTATGCCCAAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS CCA 72 bp | CCACGGCCCTTCAACTTGGAGAAGACATACACCACTTaGCCCCTATATATAGTCAAGAAGCGGCAATCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PRPFNLEKTYTT*PLYIVKKRQSG Trigger: CCCTGATTGCCGCTTCTTGACTATATATAGGGGCCAAGTGGTGTATGTCTTCTCCAAGTTGAAGGGCCGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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| CDS CAA 72 bp | CCCACGGCCCTTCAACTTGGAGAAGACATACACCACTaGGCCCCTATATATAGTCAAGAAGCGGCAATCAGG | + |
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Preference number: 6 (lower is better) Translates to: PTALQLGEDIHH*APIYSQEAAIR Trigger: CCTGATTGCCGCTTCTTGACTATATATAGGGGCCAAGTGGTGTATGTCTTCTCCAAGTTGAAGGGCCGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071986.13 ENSMUST00000121848.2 |
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