Pregenerated sensors for MGP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030218Ensembl transcript IDs: ENSMUST00000032342.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCAACCCGCAGAAGGAAGGAGTGGGCCAGCCAGCTAGGAGATCATGTAAGGAGCTTCGTAGCACAGGGTTaGCACGGCCAGCGCAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: STRRRKEWASQLGDHVRSFVAQG*HGQRSQ Trigger: CTGGCTGCGCTGGCCGTGGCAACCCTGTGCTACGAA...GCTCCTTACATGATCTCCTAGCTGGCTGGCCCACTCCTTCCTTCTGCGGGTTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS-3UTR CCA 90 bp | CAGAAGGAAGGAGTGGGCCAGCCAGCTAGGAGATCATGTAAGGAGCAAGCAACACCAGCGCAGCCAGGATaGCCAGAGGGAGCAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QKEGVGQPARRSCKEQATPAQPG*PEGAGS Trigger: AGAGCCTGCTCCCTCTGGCCATCCTGGCTGCGCTGG...TGTTGCTTGCTCCTTACATGATCTCCTAGCTGGCTGGCCCACTCCTTCCTTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS GCA 90 bp | GATTTCATAGGACTCCATGCTTTCGTGAGATTCGTAGCACAGGGTTaGCACGGCCAGCGCAGCCAGGATGGCCAGAGGGAGCAGGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: DFIGLHAFVRFVAQG*HGQRSQDGQREQAL Trigger: AAGAGCCTGCTCCCTCTGGCCATCCTGGCTGCGCTGGCCGTGGCAACCCTGTGCTACGAATCTCACGAAAGCATGGAGTCCTATGAAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS-3UTR CAA 90 bp | TCTTTCATTACTTTCAACCCGCAGAAGGAAGGAGTGGGCCAGCCAGCTAGGAGAATTCGTAGCACAGGGTaGCCACGGCCAGCGCAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SFITFNPQKEGVGQPARRIRSTG*PRPAQP Trigger: TGGCTGCGCTGGCCGTGGCAACCCTGTGCTACGAAT...TCTCCTAGCTGGCTGGCCCACTCCTTCCTTCTGCGGGTTGAAAGTAATGAAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS TCA 90 bp | TTGCGTTCCTGGACTCTCTTTTGGGCTTTAGCTCGCCACCTCTGCTaGGGGGACATAAAGGTGTTGGCATTTCTCCTGTTGATGAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: LRSWTLFWALARHLC*GDIKVLAFLLLMKG Trigger: TCCCTTCATCAACAGGAGAAATGCCAACACCTTTATGTCCCCTCAGCAGAGGTGGCGAGCTAAAGCCCAAAAGAGAGTCCAGGAACGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS-3UTR CAA 90 bp | ACTGTTCTTTCATTACTTTCAACCCGCAGAAGGAAGGAGTGGGCCAGCCAGCTATTCCTGGACTCTCTTTaGGGCTTTAGCTCGCCACCT | + |
|
Preference number: 5 (lower is better) Translates to: TVLSLLSTRRRKEWASQLFLDSL*GFSSPP Trigger: AGGTGGCGAGCTAAAGCCCAAAAGAGAGTCCAGGAA...TAGCTGGCTGGCCCACTCCTTCCTTCTGCGGGTTGAAAGTAATGAAAGAACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS-3UTR CAA 90 bp | TTCATTACTTTCAACCCGCAGAAGGAAGGAGTGGGCCAGCCAGCTAGGAGATCATTGGCATTTCTCCTGTaGATGAAGGGACTGATTTCA | + |
|
Preference number: 5 (lower is better) Translates to: FITFNPQKEGVGQPARRSLAFLL*MKGLIS Trigger: TGAAATCAGTCCCTTCATCAACAGGAGAAATGCCAA...TGATCTCCTAGCTGGCTGGCCCACTCCTTCCTTCTGCGGGTTGAAAGTAATGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS GCA 72 bp | GGACTCCATGCTTTCGTGAGATTCGTAGCACAGGGTTaGCACGGCCAGCGCAGCCAGGATGGCCAGAGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: GLHAFVRFVAQG*HGQRSQDGQRE Trigger: CTCCCTCTGGCCATCCTGGCTGCGCTGGCCGTGGCAACCCTGTGCTACGAATCTCACGAAAGCATGGAGTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS CAA 72 bp | AGGACTCCATGCTTTCGTGAGATTCGTAGCACAGGGTaGCCACGGCCAGCGCAGCCAGGATGGCCAGAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: RTPCFREIRSTG*PRPAQPGWPEG Trigger: TCCCTCTGGCCATCCTGGCTGCGCTGGCCGTGGCAACCCTGTGCTACGAATCTCACGAAAGCATGGAGTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS CAA 72 bp | CTCGTAGGCAGGCTTGTTGCGTTCCTGGACTCTCTTTaGGGCTTTAGCTCGCCACCTCTGCTGAGGGGACAT | + |
|
Preference number: 6 (lower is better) Translates to: LVGRLVAFLDSL*GFSSPPLLRGH Trigger: ATGTCCCCTCAGCAGAGGTGGCGAGCTAAAGCCCAAAAGAGAGTCCAGGAACGCAACAAGCCTGCCTACGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS CAA 90 bp | TCTGTTGATCTCGTAGGCAGGCTTGTTGCGTTCCTGGACTCTCTTTaGGGCTTTAGCTCGCCACCTCTGCTGAGGGGACATAAAGGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: SVDLVGRLVAFLDSL*GFSSPPLLRGHKGV Trigger: AACACCTTTATGTCCCCTCAGCAGAGGTGGCGAGCTAAAGCCCAAAAGAGAGTCCAGGAACGCAACAAGCCTGCCTACGAGATCAACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||
| CDS TCA 72 bp | TGGACTCTCTTTTGGGCTTTAGCTCGCCACCTCTGCTaGGGGGACATAAAGGTGTTGGCATTTCTCCTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: WTLFWALARHLC*GDIKVLAFLLL Trigger: CAACAGGAGAAATGCCAACACCTTTATGTCCCCTCAGCAGAGGTGGCGAGCTAAAGCCCAAAAGAGAGTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032342.3 |
||