RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MGAT5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036155

Ensembl transcript IDs: ENSMUST00000038361.11, ENSMUST00000171405.2

Found 333 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCTGTTCAGCTAGGCAGAAGCTCCTCCTGGCCACAGGGAGGCGCTaGGCAGCAGCCGCCGGCCAGGAAGTCTACTCTACCAGCTGGGGC +
Preference number: 1 (lower is better)
Translates to: CCSARQKLLLATGRR*AAAAGQEVYSTSWG
Trigger: GCCCCAGCTGGTAGAGTAGACTTCCTGGCCGGCGGCTGCTGCCCAGCGCCTCCCTGTGGCCAGGAGGAGCTTCTGCCTAGCTGAACAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp TGGCCTGTTACCTTGCAATGCTCCTTGTGTATCTCCTACCCACGCTaGCTTCCACAGGCAACTACCCCCGACCCCAGCGTGTGCTCCAGC +
Preference number: 1 (lower is better)
Translates to: WPVTLQCSLCISYPR*LPQATTPDPSVCSS
Trigger: GCTGGAGCACACGCTGGGGTCGGGGGTAGTTGCCTGTGGAAGCCAGCGTGGGTAGGAGATACACAAGGAGCATTGCAAGGTAACAGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 90 bp AACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTaGATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCT +
Preference number: 1 (lower is better)
Translates to: NSSPGPKISGSGQSP*MSLCPLALPSGATS
Trigger: AGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTCAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR TCA 90 bp GGCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTaGCAGGTTCAATGCCCATACACAGGTCAGGTCAGTTTCCCCTTG +
Preference number: 1 (lower is better)
Translates to: GSTRAVGAFFAVFHT*QVQCPYTGQVSFPL
Trigger: CAAGGGGAAACTGACCTGACCTGTGTATGGGCATTGAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GGAAAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTTGGAACTTaGTGGGGCCCTCAGGACACCACAGGCATTTATTTCCCCACCAAG +
Preference number: 1 (lower is better)
Translates to: GKQPLSSAAQPVFGT*WGPQDTTGIYFPTK
Trigger: CTTGGTGGGGAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp CCCTGCCGGTTGAATGTCAGCACTGTCACCCACAGCCTTCAGGTTTaGAAACTTAGGCAGATTGCCACAACTCTGGAGTGCAGCCCCGAG +
Preference number: 1 (lower is better)
Translates to: PCRLNVSTVTHSLQV*KLRQIATTLECSPE
Trigger: CTCGGGGCTGCACTCCAGAGTTGTGGCAATCTGCCTAAGTTTCCAAACCTGAAGGCTGTGGGTGACAGTGCTGACATTCAACCGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp AAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTTGGAACTTGGTaGGGCCCTCAGGACACCACAGGCATTTATTTCCCCACCAAGGTT +
Preference number: 1 (lower is better)
Translates to: KQPLSSAAQPVFGTW*GPQDTTGIYFPTKV
Trigger: AACCTTGGTGGGGAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp ACACACAGGAAAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTTaGAACTTGGTGGGGCCCTCAGGACACCACAGGCATTTATTTCCC +
Preference number: 1 (lower is better)
Translates to: THRKAASLICSPACL*NLVGPSGHHRHLFP
Trigger: GGGAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTCCTGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp CCCACAGCCTTCAGGTTTGGAAACTTAGGCAGATTGCCACAACTCTaGAGTGCAGCCCCGAGGCCCACTCTAAGGGAAAAGTCCTTTCCC +
Preference number: 1 (lower is better)
Translates to: PTAFRFGNLGRLPQL*SAAPRPTLREKSFP
Trigger: GGGAAAGGACTTTTCCCTTAGAGTGGGCCTCGGGGCTGCACTCCAGAGTTGTGGCAATCTGCCTAAGTTTCCAAACCTGAAGGCTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp CGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGGTCTTGAACTaGGGAAGAGGAATAGGAATGTGGAGAGACCCTGACCTCAAGGCC +
Preference number: 1 (lower is better)
Translates to: REKELFWVVWVRVLN*GRGIGMWRDPDLKA
Trigger: GGCCTTGAGGTCAGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 90 bp CCAGCTCCAGGCTGCTGGCTTCCTGAAGGACTACAGACCTATTCCTaGCATCTGTCTACTCTAACGGACACACAGACAGAGGGGAAGAGA +
Preference number: 1 (lower is better)
Translates to: PAPGCWLPEGLQTYS*HLSTLTDTQTEGKR
Trigger: TCTCTTCCCCTCTGTCTGTGTGTCCGTTAGAGTAGACAGATGGCAGGAATAGGTCTGTAGTCCTTCAGGAAGCCAGCAGCCTGGAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp AGAGGTAGAAGAGGATTGGTTCACTCGCCAGCATGGAGAGAACTGTaGGAGGTGTCTCCAGAAACTCACACGTGTACAGAGCACAGGAGC +
Preference number: 1 (lower is better)
Translates to: RGRRGLVHSPAWREL*EVSPETHTCTEHRS
Trigger: GCTCCTGTGCTCTGTACACGTGTGAGTTTCTGGAGACACCTCCCACAGTTCTCTCCATGCTGGCGAGTGAACCAATCCTCTTCTACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GAAGGCAACTCGAATGAGAGGAGCCCATTTCCAGCTCCAGGCTGCTaGCTTCCTGAAGGACTACAGACCTATTCCTGCCATCTGTCTACT +
Preference number: 1 (lower is better)
Translates to: EGNSNERSPFPAPGC*LPEGLQTYSCHLST
Trigger: AGTAGACAGATGGCAGGAATAGGTCTGTAGTCCTTCAGGAAGCCAGCAGCCTGGAGCTGGAAATGGGCTCCTCTCATTCGAGTTGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 90 bp GAGGGCTGGTTTTCTGCCTCAGCAACATGTCAGCTAGAGCTAGGGTaGTGGAGCATGAGACCCCTCACTACCTTGGTCATCATCAGATTC +
Preference number: 1 (lower is better)
Translates to: EGWFSASATCQLELG*WSMRPLTTLVIIRF
Trigger: GAATCTGATGATGACCAAGGTAGTGAGGGGTCTCATGCTCCATCACCCTAGCTCTAGCTGACATGTTGCTGAGGCAGAAAACCAGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 90 bp CACCACAGGCATTTATTTCCCCACCAAGGTTATGTGCCTTTTAGCTaGCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGC +
Preference number: 1 (lower is better)
Translates to: HHRHLFPHQGYVPFS*HLPSTPGIHQFWQC
Trigger: GCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTGGTGGGGAAATAAATGCCTGTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 90 bp CCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTaGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTC +
Preference number: 1 (lower is better)
Translates to: PFSCHLPSTPGIHQF*QCCDSDWLCFQGHF
Trigger: GAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 90 bp GGCATTTATTTCCCCACCAAGGTTATGTGCCTTTTAGCTGCCATCTaGCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACA +
Preference number: 1 (lower is better)
Translates to: GIYFPTKVMCLLAAI*QAHLGSTSSGNAVT
Trigger: TGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTGGTGGGGAAATAAATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 90 bp CTCAAGGCCCGGAAGCATCTGCGGGTGGAGACAAAGTTGCCTTCCTaGCTGTTTATAGTTATCTGCAACATGGGGATTAGTTTCGGCTTG +
Preference number: 1 (lower is better)
Translates to: LKARKHLRVETKLPS*LFIVICNMGISFGL
Trigger: CAAGCCGAAACTAATCCCCATGTTGCAGATAACTATAAACAGGCAGGAAGGCAACTTTGTCTCCACCCGCAGATGCTTCCGGGCCTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 90 bp GAGGGTACTAAAGGATTCTTGGCACCCTTGGCCCTAGTCTGGGGGTaGATGTGTATACACCACACACTGGAACATACACAAAACACACAG +
Preference number: 1 (lower is better)
Translates to: EGTKGFLAPLALVWG*MCIHHTLEHTQNTQ
Trigger: CTGTGTGTTTTGTGTATGTTCCAGTGTGTGGTGTATACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTTAGTACCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GTTCTAAGAGTGAGTTCCCTGGATTGCAGCAATATCAGACATCAATaGGGGCAAGGCACAAAGCCTCGTGCTACTAACTCTAGGACTGGC +
Preference number: 1 (lower is better)
Translates to: VLRVSSLDCSNIRHQ*GQGTKPRATNSRTG
Trigger: GCCAGTCCTAGAGTTAGTAGCACGAGGCTTTGTGCCTTGCCCCCATTGATGTCTGATATTGCTGCAATCCAGGGAACTCACTCTTAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 90 bp TTGAAGACACAGACGTCAACGGCCATGAGCTTAACAGCAAGGTTGTaGCAGGAACTACAGTGGAAGGGACATCACCATGTCCTTTGGCAT +
Preference number: 1 (lower is better)
Translates to: LKTQTSTAMSLTARL*QELQWKGHHHVLWH
Trigger: ATGCCAAAGGACATGGTGATGTCCCTTCCACTGTAGTTCCTGTCACAACCTTGCTGTTAAGCTCATGGCCGTTGACGTCTGTGTCTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTaGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGAATGTGGAGA +
Preference number: 1 (lower is better)
Translates to: GMGFITREKELFWVV*VRVLNWGRGIGMWR
Trigger: TCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GTCTTGTGTGCCTGCATACACTGGGACATGTGTGTGCACACACTGTaGACAAATGTAGTTATTCAAGGCTGGAACAATCTGCTATCAGCC +
Preference number: 1 (lower is better)
Translates to: VLCACIHWDMCVHTL*TNVVIQGWNNLLSA
Trigger: GGCTGATAGCAGATTGTTCCAGCCTTGAATAACTACATTTGTCCACAGTGTGTGCACACACATGTCCCAGTGTATGCAGGCACACAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 90 bp GACATGTGTGTGCACACACTGTGGACAAATGTAGTTATTCAAGGCTaGAACAATCTGCTATCAGCCTTCGACAGCACCCAGCCTTCAAAA +
Preference number: 1 (lower is better)
Translates to: DMCVHTLWTNVVIQG*NNLLSAFDSTQPSK
Trigger: TTTTGAAGGCTGGGTGCTGTCGAAGGCTGATAGCAGATTGTTCCAGCCTTGAATAACTACATTTGTCCACAGTGTGTGCACACACATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 90 bp CTATTCTCTTTAATACATGGGCTAAGCTCTAAGCAAAAACAAATCTaGTTCCCATATCTGCTACATTCCGGCTTCTGTGGGAGCTGTAGA +
Preference number: 1 (lower is better)
Translates to: LFSLIHGLSSKQKQI*FPYLLHSGFCGSCR
Trigger: TCTACAGCTCCCACAGAAGCCGGAATGTAGCAGATATGGGAAGCAGATTTGTTTTTGCTTAGAGCTTAGCCCATGTATTAAAGAGAATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 90 bp ACACAGAAATGCACAAGGCATGGTCCCTCTCAGGAGTTCTTACTCTaGAAAAGCTTTCACCTTCTGAAGCAACTTACTCTCTCTTTTAAT +
Preference number: 1 (lower is better)
Translates to: TQKCTRHGPSQEFLL*KSFHLLKQLTLSFN
Trigger: ATTAAAAGAGAGAGTAAGTTGCTTCAGAAGGTGAAAGCTTTTTCAGAGTAAGAACTCCTGAGAGGGACCATGCCTTGTGCATTTCTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp CCTTCCTGGCAGCTGAACCTGGGCAGAGGTGATTCCAGGCAGGCCTaGAGGGACCCCTGTCAGTGCTTAGGGCCAGTACCCGCCCTGACA +
Preference number: 2 (lower is better)
Translates to: PSWQLNLGRGDSRQA*RDPCQCLGPVPALT
Trigger: TGTCAGGGCGGGTACTGGCCCTAAGCACTGACAGGGGTCCCTCAAGGCCTGCCTGGAATCACCTCTGCCCAGGTTCAGCTGCCAGGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp CCCACAGTGGCCCCTCAAGCAAGCCACAGCCCCTCTGCACCCTGCTaGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGAATTAACA +
Preference number: 2 (lower is better)
Translates to: PTVAPQASHSPSAPC*ALQNKKGPKVGELT
Trigger: TGTTAATTCGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGCTGTGGCTTGCTTGAGGGGCCACTGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR TCA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGCTCTGCTGCCACCTGTaGCCAGGAGTGAAGCCCCAC +
Preference number: 2 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVLCCHL*PGVKPH
Trigger: GTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAG...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR GCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCCACCCTGCTTGGCGCTaGAGAACAAGAAGGGCCCGA +
Preference number: 2 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFHPAWR*RTRRAR
Trigger: TCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTG...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACCTTGGCCCTGCCCAGTaGAGCCACGTCTTTCCCGTC +
Preference number: 2 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDLGPAQ*SHVFPV
Trigger: GACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAG...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCCCTCTGCACCCTGCTTaGCGCTGCAGAACAAGAAGG +
Preference number: 2 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPPLHPA*RCRTRR
Trigger: CCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGG...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp AGACATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGTGTCTTTGTGCCCCTTaGCCCTGCCCAGTGGAGCCA +
Preference number: 2 (lower is better)
Translates to: RHLFSLLPPVTRSEAPQWCLCAP*PCPVEP
Trigger: TGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACA...CCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCGTCTACTCTACCAGCTaGGGCTGGGTGGACAATGCT +
Preference number: 2 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFVYSTS*GWVDNA
Trigger: AGCATTGTCCACCCAGCCCCAGCTGGTAGAGTAGAC...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGGGCAGAAGCTCCTCCTaGCCACAGGGAGGCGCTGGG +
Preference number: 2 (lower is better)
Translates to: GMGFITREKELFWVVWVRGRSSS*PQGGAG
Trigger: CCCAGCGCCTCCCTGTGGCCAGGAGGAGCTTCTGCC...CCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR TCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCTCTGGTCAGAGTCCCTaGATGTCTTTGTGCCCCTTG +
Preference number: 2 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPSGQSP*MSLCPL
Trigger: CAAGGGGCACAAAGACATTCAGGGACTCTGACCAGA...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGACTTGGCCCTGCCCAGTaGAGCCACGTCTTTCCCGTC +
Preference number: 2 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGLGPAQ*SHVFPV
Trigger: GACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAG...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp CCAGAAATTAGGACCAAGCTATGTAGGGGGAGGGGGAGGAAGGGACACACACACCCTGTCTTTGGAACTTaGTGGGGCCCTCAGGACACC +
Preference number: 2 (lower is better)
Translates to: PEIRTKLCRGRGRKGHTHPVFGT*WGPQDT
Trigger: GGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGG...GTGTGTGTGTCCCTTCCTCCCCCTCCCCCTACATAGCTTGGTCCTAATTTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp AGGAAAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTTGGAACTaGGTGGGGCCCTCAGGACACCACAGGCATTTATTTCCCCACCAA +
Preference number: 2 (lower is better)
Translates to: RKAASLICSPACLWN*VGPSGHHRHLFPHQ
Trigger: TTGGTGGGGAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp CACACACAGGAAAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTaGGAACTTGGTGGGGCCCTCAGGACACCACAGGCATTTATTTCC +
Preference number: 2 (lower is better)
Translates to: HTQESSLSHLQPSLS*ELGGALRTPQAFIS
Trigger: GGAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTCCTGTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCTCTGCACCCTGCTTaGCGCTGCAGAACAAGAAGG +
Preference number: 2 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPPLHPA*RCRTRR
Trigger: CCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGG...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp GGGGAGGGGGAGGAAGGGACACACACACACAGGAAAGCAGCCTCTCTCATCTGCTGCTGTGACAGTGACTaGCTGTGTTTTCAAGGCCAT +
Preference number: 2 (lower is better)
Translates to: GEGEEGTHTHRKAASLICCCDSD*LCFQGH
Trigger: ATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCA...GCAGATGAGAGAGGCTGCTTTCCTGTGTGTGTGTGTCCCTTCCTCCCCCTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCAAAGATCTCAGGCTCTaGTCAGAGTCCCTGAATGTC +
Preference number: 2 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPKDLRL*SESLNV
Trigger: GACATTCAGGGACTCTGACCAGAGCCTGAGATCTTT...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACGCATTTATGTGGTGCTaGGGATGGAACCCAGGACTT +
Preference number: 2 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDAFMWC*GWNPGL
Trigger: AAGTCCTGGGTTCCATCCCCAGCACCACATAAATGC...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCCTTGTAGCCAAGACATaGGGACAAAGGCCTTGCTTT +
Preference number: 2 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFLVAKT*GQRPCF
Trigger: AAAGCAAGGCCTTTGTCCCCATGTCTTGGCTACAAG...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR TCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCAAGCATTCTACAAACTaGGCTACATCCCCCTGCTTA +
Preference number: 2 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFKHSTN*ATSPCL
Trigger: TAAGCAGGGGGATGTAGCTCAGTTTGTAGAATGCTT...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCAAAGTCCTTCCCAATTaGCTCAATTCCCTCTTCCTG +
Preference number: 2 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPKVLPN*LNSLFL
Trigger: CAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTT...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 90 bp ATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGGTCTaGAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTGACCTC +
Preference number: 2 (lower is better)
Translates to: ITREKELFWVVWVRV*NWGRGIGMWRDPDL
Trigger: GAGGTCAGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp TCAGATTCAGAGATAGGGTCTGGTCCTGAGGGTACTAAAGGATTCTaGGCACCCTTGGCCCTAGTCTGGGGGTGCATGTGTATACACCAC +
Preference number: 2 (lower is better)
Translates to: SDSEIGSGPEGTKGF*APLALVWGCMCIHH
Trigger: GTGGTGTATACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTTAGTACCCTCAGGACCAGACCCTATCTCTGAATCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR TCA 90 bp GGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCGGACATTCCTTACATTaGGGAGAACCCAGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: GYVPFSCHLPSTPGIHQFGHSLH*GEPRFL
Trigger: CAGGAACCTGGGTTCTCCTCAATGTAAGGAATGTCC...GAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR GCA 90 bp TTATGTAGCCAAGGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTGTGCCCCTTGGCCCTaGCCAGTGGAGCCACGTCTT +
Preference number: 2 (lower is better)
Translates to: LCSQGECLVLLTLFLTCICAPWP*PVEPRL
Trigger: AAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACA...AATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR GCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACACTCTGTTTCTTACCTaGATTTATGTGGTGCTGGGG +
Preference number: 2 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDTLFLT*IYVVLG
Trigger: CCCCAGCACCACATAAATGCAGGTAAGAAACAGAGT...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp ATTCCTTACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTGTCTTTGTGCCCCTTaGCCCTGCCCAGTGGAGCCA +
Preference number: 2 (lower is better)
Translates to: IPYIEENPGSCSNLFPCGCLCAP*PCPVEP
Trigger: TGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACA...ACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACGTTCCCTTGTGGTTTTaGTGTAAACTGGGATGCACT +
Preference number: 2 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDVPLWF*CKLGCT
Trigger: AGTGCATCCCAGTTTACACCAAAACCACAAGGGAAC...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR TCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGAATGCTTGGTCCTCCTaGCTCTGTTTCTTACCTGCA +
Preference number: 2 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQNAWSS*LCFLPA
Trigger: TGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATT...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR GCA 90 bp CTATTCTCTTTAATACATGGGCTAAGCTCTAAGCAAAAACAAATCTGCTTCCCACCCGACCCCAGCGTGTaGTCCAGCTGTGGCGGGTGG +
Preference number: 2 (lower is better)
Translates to: LFSLIHGLSSKQKQICFPPDPSV*SSCGGW
Trigger: CCACCCGCCACAGCTGGAGCACACGCTGGGGTCGGG...TGGGAAGCAGATTTGTTTTTGCTTAGAGCTTAGCCCATGTATTAAAGAGAATAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR TCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTGGACATTCCTTACATTaGGGAGAACCCAGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCGHSLH*GEPRFL
Trigger: CAGGAACCTGGGTTCTCCTCAATGTAAGGAATGTCC...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR TCA 90 bp TCCCAGCCAAAGAACAGACAGCTATTTCCAAACACTCACCTAAAACAAACGATTACCTGTGACCAGGAGTaGAGCCCCACAGTGGCCCCT +
Preference number: 2 (lower is better)
Translates to: SQPKNRQLFPNTHLKQTITCDQE*SPTVAP
Trigger: AGGGGCCACTGTGGGGCTTCACTCCTGGTCACAGGT...AATCGTTTGTTTTAGGTGAGTGTTTGGAAATAGCTGTCTGTTCTTTGGCTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR GCA 90 bp ATTCCTTACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTGGTGTAAACTGGGATaGACTGGCTGTGGCTGGAGC +
Preference number: 2 (lower is better)
Translates to: IPYIEENPGSCSNLFPCGWCKLG*TGCGWS
Trigger: GCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCA...ACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGAAAGTCCTTCCCAATTaGCTCAATTCCCTCTTCCTG +
Preference number: 2 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQKVLPN*LNSLFL
Trigger: CAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTT...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR TCA 90 bp TCAAAAGGTCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATTGGTGGTTCTCTGGTCAGAGTCCCTaGATGTCTTTGTGCCCCTTG +
Preference number: 2 (lower is better)
Translates to: SKGPSKKPLECSRTYWWFSGQSP*MSLCPL
Trigger: CAAGGGGCACAAAGACATTCAGGGACTCTGACCAGA...GAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGACCTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGACTAAACTCAAGCCCTaGACCAAAGATCTCAGGCTC +
Preference number: 2 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGTKLKP*TKDLRL
Trigger: GAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 90 bp TTAACCCTAGAAGTGACAGTAGAAAACAAGCGAACCAGGATCCATTaGAAGACACAGACGTCAACGGCCATGAGCTTAACAGCAAGGTTG +
Preference number: 2 (lower is better)
Translates to: LTLEVTVENKRTRIH*KTQTSTAMSLTARL
Trigger: CAACCTTGCTGTTAAGCTCATGGCCGTTGACGTCTGTGTCTTCAAATGGATCCTGGTTCGCTTGTTTTCTACTGTCACTTCTAGGGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CCA 90 bp TGTTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTAACTAAACTCAAGCCCTaGACCAAAGATCTCAGGCTC +
Preference number: 2 (lower is better)
Translates to: CFLPAFMWCWGWNPGLHLTKLKP*TKDLRL
Trigger: GAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT...TAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CCA 90 bp TCCCAGCCAAAGAACAGACAGCTATTTCCAAACACTCACCTAAAACAAACGATTGCATTTATGTGGTGCTaGGGATGGAACCCAGGACTT +
Preference number: 2 (lower is better)
Translates to: SQPKNRQLFPNTHLKQTIAFMWC*GWNPGL
Trigger: AAGTCCTGGGTTCCATCCCCAGCACCACATAAATGC...AATCGTTTGTTTTAGGTGAGTGTTTGGAAATAGCTGTCTGTTCTTTGGCTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR GCA 90 bp CTATTCTCTTTAATACATGGGCTAAGCTCTAAGCAAAAACAAATCTGCTTCCCAGAACACACACAGAAATaGACAAGGCATGGTCCCTCT +
Preference number: 2 (lower is better)
Translates to: LFSLIHGLSSKQKQICFPEHTQK*TRHGPS
Trigger: AGAGGGACCATGCCTTGTGCATTTCTGTGTGTGTTC...TGGGAAGCAGATTTGTTTTTGCTTAGAGCTTAGCCCATGTATTAAAGAGAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp CTCAAAAGGTCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATaGGTGGTTCAATTTCAGGTAATAAATTCAGCCTTGTTTCACAGA +
Preference number: 2 (lower is better)
Translates to: LKRSLKETPGMFQNI*VVQFQVINSALFHR
Trigger: TCTGTGAAACAAGGCTGAATTTATTACCTGAAATTGAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGACCTTTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 90 bp AAGGGATTTCCTGGGGGCTGTAGATTCAGTTGCTCCCTCTTTCCGTaGAACAAATTGAAAATTCTATTATTGCATTATAGCGGAGTAAAA +
Preference number: 2 (lower is better)
Translates to: KGFPGGCRFSCSLFP*NKLKILLLHYSGVK
Trigger: TTTTACTCCGCTATAATGCAATAATAGAATTTTCAATTTGTTCAACGGAAAGAGGGAGCAACTGAATCTACAGCCCCCAGGAAATCCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGATGTCTTTGTGCCCCTaGGCCCTGCCCAGTGGAGCC +
Preference number: 3 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVMSLCP*ALPSGA
Trigger: GGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACAT...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp GGGACACACACACACAGGAAAGCAGCCTCTCTCATCTaGAGCCCAGCCTGTCTTTGGAACTTGGTGGGGCCC +
Preference number: 3 (lower is better)
Translates to: GTHTHRKAASLI*SPACLWNLVGP
Trigger: GGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTCCTGTGTGTGTGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp AAAGGTGGGGATTCCGGCATACTGCCTAGGCCAACCTaGTGTCAGGCCCTCACAGGGGCTGCTCAAACTCCA +
Preference number: 3 (lower is better)
Translates to: KGGDSGILPRPT*CQALTGAAQTP
Trigger: TGGAGTTTGAGCAGCCCCTGTGAGGGCCTGACAGCAGGTTGGCCTAGGCAGTATGCCGGAATCCCCACCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp ACCTTGCAATGCTCCTTGTGTATCTCCTACCCACGCTaGCTTCCACAGGCAACTACCCCCGACCCCAGCGTG +
Preference number: 3 (lower is better)
Translates to: TLQCSLCISYPR*LPQATTPDPSV
Trigger: CACGCTGGGGTCGGGGGTAGTTGCCTGTGGAAGCCAGCGTGGGTAGGAGATACACAAGGAGCATTGCAAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CAA 90 bp CAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCCCCCTCTGCACCCTGCTaGGCGCTGCAGAACAAGAAG +
Preference number: 3 (lower is better)
Translates to: QCCDSDWLCFQGHFPPPPPSAPC*ALQNKK
Trigger: CTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGG...GGGAGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR TCA 72 bp GAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTaGCCTCAAGGCCCGGAAGCATCTGCGGGTGGAGAC +
Preference number: 3 (lower is better)
Translates to: ELGKRNRNVERP*PQGPEASAGGD
Trigger: GTCTCCACCCGCAGATGCTTCCGGGCCTTGAGGTCAGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp ACACACAGCCCTCGGTCGCCAATGCTTTGTAAGTGCTaGCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGT +
Preference number: 3 (lower is better)
Translates to: THSPRSPMLCKC*LHQGCGCLLCC
Trigger: ACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGCCAGCACTTACAAAGCATTGGCGACCGAGGGCTGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 72 bp ATGGGGATTAGTTTCGGCTTGGCGCCCCCTGCCGGTTaGATGTCAGCACTGTCACCCACAGCCTTCAGGTTT +
Preference number: 3 (lower is better)
Translates to: MGISFGLAPPAG*MSALSPTAFRF
Trigger: AAACCTGAAGGCTGTGGGTGACAGTGCTGACATTCAACCGGCAGGGGGCGCCAAGCCGAAACTAATCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp TGTGGAGAGACCCTGACCTCAAGGCCCGGAAGCATCTaGGGGTGGAGACAAAGTTGCCTTCCTGCCTGTTTA +
Preference number: 3 (lower is better)
Translates to: CGETLTSRPGSI*GWRQSCLPACL
Trigger: TAAACAGGCAGGAAGGCAACTTTGTCTCCACCCGCAGATGCTTCCGGGCCTTGAGGTCAGGGTCTCTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp ATTACACACAGCCCTCGGTCGCCAATGCTTTGTAAGTaGTGGCTCCACCAGGGCTGTGGGTGCCTTCTTTGC +
Preference number: 3 (lower is better)
Translates to: ITHSPRSPMLCK*WLHQGCGCLLC
Trigger: GCAAAGAAGGCACCCACAGCCCTGGTGGAGCCAGCACTTACAAAGCATTGGCGACCGAGGGCTGTGTGTAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp ACTGGCTGTGGCTGGAGCGGTACTAAACTCAAGCCCTaGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTG +
Preference number: 3 (lower is better)
Translates to: TGCGWSGTKLKP*TKDLRLWSESL
Trigger: CAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCAGCCACAGCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp GGGATCCACCAGTTCTGGCAATGCTGTGACAGTGACTaGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCC +
Preference number: 3 (lower is better)
Translates to: GIHQFWQCCDSD*LCFQGHFPPPP
Trigger: GGGAGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCAGAACTGGTGGATCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp AAGTGCTGGCTCCACCAGGGCTGTGGGTGCCTTCTTTaGTGTCTTCCACACCTGACAGGTTCAATGCCCATA +
Preference number: 3 (lower is better)
Translates to: KCWLHQGCGCLL*CLPHLTGSMPI
Trigger: TATGGGCATTGAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGCCAGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp TGGAAGGTTCAATTACACACAGCCCTCGGTCGCCAATaGTTTGTAAGTGCTGGCTCCACCAGGGCTGTGGGT +
Preference number: 3 (lower is better)
Translates to: WKVQLHTALGRQ*FVSAGSTRAVG
Trigger: ACCCACAGCCCTGGTGGAGCCAGCACTTACAAAGCATTGGCGACCGAGGGCTGTGTGTAATTGAACCTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp CCTCTCTCATCTGCAGCCCAGCCTGTCTTTGGAACTTaGTGGGGCCCTCAGGACACCACAGGCATTTATTTC +
Preference number: 3 (lower is better)
Translates to: PLSSAAQPVFGT*WGPQDTTGIYF
Trigger: GAAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp CCGGCCAGGAAGTCTACTCTACCAGCTGGGGCTGGGTaGACAATGCTAACAGCAAGAGGTAGAAGAGGATTG +
Preference number: 3 (lower is better)
Translates to: PARKSTLPAGAG*TMLTARGRRGL
Trigger: CAATCCTCTTCTACCTCTTGCTGTTAGCATTGTCCACCCAGCCCCAGCTGGTAGAGTAGACTTCCTGGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CAA 90 bp CCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGATGTTTTGTTTTCAGTTaGAATGAGTCTCCGGACTTT +
Preference number: 3 (lower is better)
Translates to: PLCTLLGAAEQEGPEGGRCFVFS*NESPDF
Trigger: AAAGTCCGGAGACTCATTCAAACTGAAAACAAAACA...TCGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CAA 90 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGCCCTCTGCACCCTGCTaGGCGCTGCAGAACAAGAAG +
Preference number: 3 (lower is better)
Translates to: GMGFITREKELFWVVWVRPSAPC*ALQNKK
Trigger: CTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGG...CCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGAGCCAAGGAGAATGCTaGGTCCTCCTGACTCTGTTT +
Preference number: 3 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVSQGEC*VLLTLF
Trigger: AAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCT...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp CTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATaGTGTGACAGTGACTGGCTGTGTTTTCAAGGCCAT +
Preference number: 3 (lower is better)
Translates to: LPSTPGIHQFWQ*CDSDWLCFQGH
Trigger: ATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp AACTCGAATGAGAGGAGCCCATTTCCAGCTCCAGGCTaGTGGCTTCCTGAAGGACTACAGACCTATTCCTGC +
Preference number: 3 (lower is better)
Translates to: NSNERSPFPAPG*WLPEGLQTYSC
Trigger: GCAGGAATAGGTCTGTAGTCCTTCAGGAAGCCAGCAGCCTGGAGCTGGAAATGGGCTCCTCTCATTCGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp CCACTCACAGGATTAATCTTGGGTAGGATGGGAATGTaGCAGAGGTGTAACCAGCCTGCTGGGAGCCATCCT +
Preference number: 3 (lower is better)
Translates to: PLTGLILGRMGM*QRCNQPAGSHP
Trigger: AGGATGGCTCCCAGCAGGCTGGTTACACCTCTGCCACATTCCCATCCTACCCAAGATTAATCCTGTGAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp GTTTGGAAACTTAGGCAGATTGCCACAACTCTGGAGTaGAGCCCCGAGGCCCACTCTAAGGGAAAAGTCCTT +
Preference number: 3 (lower is better)
Translates to: VWKLRQIATTLE*SPEAHSKGKVL
Trigger: AAGGACTTTTCCCTTAGAGTGGGCCTCGGGGCTGCACTCCAGAGTTGTGGCAATCTGCCTAAGTTTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp AGAGGATTGGTTCACTCGCCAGCATGGAGAGAACTGTaGGAGGTGTCTCCAGAAACTCACACGTGTACAGAG +
Preference number: 3 (lower is better)
Translates to: RGLVHSPAWREL*EVSPETHTCTE
Trigger: CTCTGTACACGTGTGAGTTTCTGGAGACACCTCCCACAGTTCTCTCCATGCTGGCGAGTGAACCAATCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp TTCAGGTTTGGAAACTTAGGCAGATTGCCACAACTCTaGAGTGCAGCCCCGAGGCCCACTCTAAGGGAAAAG +
Preference number: 3 (lower is better)
Translates to: FRFGNLGRLPQL*SAAPRPTLREK
Trigger: CTTTTCCCTTAGAGTGGGCCTCGGGGCTGCACTCCAGAGTTGTGGCAATCTGCCTAAGTTTCCAAACCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 72 bp CAGACGTCAACGGCCATGAGCTTAACAGCAAGGTTGTaGCAGGAACTACAGTGGAAGGGACATCACCATGTC +
Preference number: 3 (lower is better)
Translates to: QTSTAMSLTARL*QELQWKGHHHV
Trigger: GACATGGTGATGTCCCTTCCACTGTAGTTCCTGTCACAACCTTGCTGTTAAGCTCATGGCCGTTGACGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp GGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTaGATTTATGTGGTGCTGGGGATGGAACCCAGGACT +
Preference number: 3 (lower is better)
Translates to: GECLVLLTLFLT*IYVVLGMEPRT
Trigger: AGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp GACACCACAGGCATTTATTTCCCCACCAAGGTTATGTaGCTTTTAGCTGCCATCTGCCAAGCACACCTGGGA +
Preference number: 3 (lower is better)
Translates to: DTTGIYFPTKVM*LLAAICQAHLG
Trigger: TCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTGGTGGGGAAATAAATGCCTGTGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp TGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTaGAGCGGTACTAAACTCAAGCCCTGGACCAAAGAT +
Preference number: 3 (lower is better)
Translates to: WFWCKLGCTGCG*SGTKLKPWTKD
Trigger: ATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp GAACACACGAGTCCTGACTTCAGATTCCTATCCAGGTaGAAGGTTCAATTACACACAGCCCTCGGTCGCCAA +
Preference number: 3 (lower is better)
Translates to: EHTSPDFRFLSR*KVQLHTALGRQ
Trigger: TTGGCGACCGAGGGCTGTGTGTAATTGAACCTTCCACCTGGATAGGAATCTGAAGTCAGGACTCGTGTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp GGTACTAAAGGATTCTTGGCACCCTTGGCCCTAGTCTaGGGGTGCATGTGTATACACCACACACTGGAACAT +
Preference number: 3 (lower is better)
Translates to: GTKGFLAPLALV*GCMCIHHTLEH
Trigger: ATGTTCCAGTGTGTGGTGTATACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTTAGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp CATTTATTTCCCCACCAAGGTTATGTGCCTTTTAGCTaGCATCTGCCAAGCACACCTGGGATCCACCAGTTC +
Preference number: 3 (lower is better)
Translates to: HLFPHQGYVPFS*HLPSTPGIHQF
Trigger: GAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTGGTGGGGAAATAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR GCA 72 bp GAGACAAAGTTGCCTTCCTGCCTGTTTATAGTTATCTaGAACATGGGGATTAGTTTCGGCTTGGCGCCCCCT +
Preference number: 3 (lower is better)
Translates to: ETKLPSCLFIVI*NMGISFGLAPP
Trigger: AGGGGGCGCCAAGCCGAAACTAATCCCCATGTTGCAGATAACTATAAACAGGCAGGAAGGCAACTTTGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp AAAGGATTCTTGGCACCCTTGGCCCTAGTCTGGGGGTaGATGTGTATACACCACACACTGGAACATACACAA +
Preference number: 3 (lower is better)
Translates to: KGFLAPLALVWG*MCIHHTLEHTQ
Trigger: TTGTGTATGTTCCAGTGTGTGGTGTATACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp TGTTCTAACCTGTTCCCTTGTGGTTTTGGTGTAAACTaGGATGCACTGGCTGTGGCTGGAGCGGTACTAAAC +
Preference number: 3 (lower is better)
Translates to: CSNLFPCGFGVN*DALAVAGAVLN
Trigger: GTTTAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTTAGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp GTGAGTTCCCTGGATTGCAGCAATATCAGACATCAATaGGGGCAAGGCACAAAGCCTCGTGCTACTAACTCT +
Preference number: 3 (lower is better)
Translates to: VSSLDCSNIRHQ*GQGTKPRATNS
Trigger: AGAGTTAGTAGCACGAGGCTTTGTGCCTTGCCCCCATTGATGTCTGATATTGCTGCAATCCAGGGAACTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTaGGTTGTGTGGGTCAGGGTCTTGAACTGGGGAAGA +
Preference number: 3 (lower is better)
Translates to: GMGFITREKELF*VVWVRVLNWGR
Trigger: TCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp CGGAAGCATCTGCGGGTGGAGACAAAGTTGCCTTCCTaGCTGTTTATAGTTATCTGCAACATGGGGATTAGT +
Preference number: 3 (lower is better)
Translates to: RKHLRVETKLPS*LFIVICNMGIS
Trigger: ACTAATCCCCATGTTGCAGATAACTATAAACAGGCAGGAAGGCAACTTTGTCTCCACCCGCAGATGCTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp TTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTaGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGA +
Preference number: 3 (lower is better)
Translates to: FITREKELFWVV*VRVLNWGRGIG
Trigger: TCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CCA 72 bp GTGCACACACTGTGGACAAATGTAGTTATTCAAGGCTaGAACAATCTGCTATCAGCCTTCGACAGCACCCAG +
Preference number: 3 (lower is better)
Translates to: VHTLWTNVVIQG*NNLLSAFDSTQ
Trigger: CTGGGTGCTGTCGAAGGCTGATAGCAGATTGTTCCAGCCTTGAATAACTACATTTGTCCACAGTGTGTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 72 bp TGTATGCACCCAGGTAGAGATCAAGAGAAGAACAGATaGTTTCCCAGACCAAAAAGTTCCATGCGCCATCTC +
Preference number: 3 (lower is better)
Translates to: CMHPGRDQEKNR*FPRPKSSMRHL
Trigger: GAGATGGCGCATGGAACTTTTTGGTCTGGGAAATCATCTGTTCTTCTCTTGATCTCTACCTGGGTGCATACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 72 bp TTTTGTTATGTAGCCAAGGAGAATGCTTGGTCCTCCTaGCTCTGTTTCTTACCTGCATTTATGTGGTGCTGG +
Preference number: 3 (lower is better)
Translates to: FCYVAKENAWSS*LCFLPAFMWCW
Trigger: CCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp CTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGGATaGAACCCAGGACTTCATTTATGCTATGCAAGCATT +
Preference number: 3 (lower is better)
Translates to: LCFLPAFMWCWG*NPGLHLCYASI
Trigger: AATGCTTGCATAGCATAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CCA 72 bp CAATTTTCTGAGATAGGGTCTCTTGTAGCCAAGACATaGGGACAAAGGCCTTGCTTTTGTTATGTAGCCAAG +
Preference number: 3 (lower is better)
Translates to: QFSEIGSLVAKT*GQRPCFCYVAK
Trigger: CTTGGCTACATAACAAAAGCAAGGCCTTTGTCCCCATGTCTTGGCTACAAGAGACCCTATCTCAGAAAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR-3UTR CAA 90 bp CTATTCTCTTTAATACATGGGCTAAGCTCTAAGCAAAAACAAATCTGCTTCCCAACCTTGCAATGCTCCTaGTGTATCTCCTACCCACGC +
Preference number: 3 (lower is better)
Translates to: LFSLIHGLSSKQKQICFPTLQCS*CISYPR
Trigger: GCGTGGGTAGGAGATACACAAGGAGCATTGCAAGGT...TGGGAAGCAGATTTGTTTTTGCTTAGAGCTTAGCCCATGTATTAAAGAGAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR GCA 72 bp TTAATACATGGGCTAAGCTCTAAGCAAAAACAAATCTaGTTCCCATATCTGCTACATTCCGGCTTCTGTGGG +
Preference number: 3 (lower is better)
Translates to: LIHGLSSKQKQI*FPYLLHSGFCG
Trigger: CCCACAGAAGCCGGAATGTAGCAGATATGGGAAGCAGATTTGTTTTTGCTTAGAGCTTAGCCCATGTATTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR TCA 72 bp AGGACAGCCTTAAGTGCCACAAAATCTGGGGAAGAGTaGAACTCTGAGAGAGGTAAATTCAATACTTTCATT +
Preference number: 3 (lower is better)
Translates to: RTALSATKSGEE*NSERGKFNTFI
Trigger: AATGAAAGTATTGAATTTACCTCTCTCAGAGTTTCACTCTTCCCCAGATTTTGTGGCACTTAAGGCTGTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GCCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGCAAGCGACACCAAGCTaGGGACAGCCGTGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: APLHPAWRCRTRRARRWAQATPS*GQPWWS
Trigger: ACTCCACCACGGCTGTCCCCAGCTTGGTGTCGCTTG...CGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCTCAGCCAGCTTCACCTaGAGGGCGCTGAGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFSASFT*RALRGG
Trigger: GCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGA...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GCCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGAGCAGGAGGTCCCCTTaGAACACACAGTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: APLHPAWRCRTRRARRWASRRSP*NTQCLL
Trigger: GAGCAAGCACTGTGTGTTCCAAGGGGACCTCCTGCT...CGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp CCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGATTGCAGAGGGCCACTTaGCCCTTGATGAAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: PLCTLLGAAEQEGPEGGRLQRAT*PLMKSR
Trigger: CCGGGACTTCATCAAGGGCCAAGTGGCCCTCTGCAA...TCGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GCCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGTGTCCTTCATCCACTTaGTTTTCCCCTCGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: APLHPAWRCRTRRARRWACPSST*FSPRSG
Trigger: CCCACTGCGAGGGGAAAATCAAGTGGATGAAGGACA...CGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp GCCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGTCCCGGAGAAGAAACTaGAGGTCACGTCCACTGAGA +
Preference number: 4 (lower is better)
Translates to: APLHPAWRCRTRRARRWASRRRN*RSRPLR
Trigger: TCTCAGTGGACGTGACCTGCAGTTTCTTCTCCGGGA...CGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp CAGCTGAACCTGGGCAGAGGTGATTCCAGGCAGGCCTaGAGGGACCCCTGTCAGTGCTTAGGGCCAGTACCC +
Preference number: 4 (lower is better)
Translates to: QLNLGRGDSRQA*RDPCQCLGPVP
Trigger: GGGTACTGGCCCTAAGCACTGACAGGGGTCCCTCAAGGCCTGCCTGGAATCACCTCTGCCCAGGTTCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGGAGCTGCTCTCGGGCTaGGTCCGCTGCTGGATGGTG +
Preference number: 4 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVELLSG*VRCWMV
Trigger: CACCATCCAGCAGCGGACTCAGCCCGAGAGCAGCTC...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGATGCTGGATGGTGAAGTaGAGAAGCATCATGCCCCAG +
Preference number: 4 (lower is better)
Translates to: PLCTLLGAAEQEGPEGGRCWMVK*RSIMPQ
Trigger: CTGGGGCATGATGCTTCTGCACTTCACCATCCAGCA...TCGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGACCTTTGACTCGAGCTTaGCAATGCGCTGCAGGATGT +
Preference number: 4 (lower is better)
Translates to: PLCTLLGAAEQEGPEGGRPLTRA*QCAAGC
Trigger: ACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGG...TCGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGACATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGTCACCTGCAGGGCGCTaGGGGGCGGCCACATCACTT +
Preference number: 4 (lower is better)
Translates to: RHLFSLLPPVTRSEAPQWSPAGR*GAATSL
Trigger: AAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGA...CCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCAGGAAGGCTCGCAGATaGGCTGGCTCTCCTGGCACA +
Preference number: 4 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPRKARR*AGSPGT
Trigger: TGTGCCAGGAGAGCCAGCTCATCTGCGAGCCTTCCT...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCTCGCTGGAGTTCAGGTaGTGCTCCACCACGAAGCCC +
Preference number: 4 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPSLEFR*CSTTKP
Trigger: GGGCTTCGTGGTGGAGCAGCACCTGAACTCCAGCGA...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTTCAGCCAGCTTCACCTaGAGGGCGCTGAGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPSASFT*RALRGG
Trigger: GCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGA...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCCCGTGGTGGAGTTGGTaGAGTTCGCTCCTGTGCCGT +
Preference number: 4 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFPWWSW*SSLLCR
Trigger: ACGGCACAGGAGCGAACTCCACCAACTCCACCACGG...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GAATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGGGCGGCCACATCACTTaGCCATGGCAGAAGTCCTGT +
Preference number: 4 (lower is better)
Translates to: ECLCAPWPCPVEPRLSRLGGHIT*PWQKSC
Trigger: ACAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCC...CAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GAAAGCAGCCTCTCTCATCTGCAGCCCAGCCTGTCTTaGGAACTTGGTGGGGCCCTCAGGACACCACAGGCA +
Preference number: 4 (lower is better)
Translates to: ESSLSHLQPSLS*ELGGALRTPQA
Trigger: TGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGCTGCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp TTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGAGTTAATTCCAGAGGGCCACCGCTaGATGCTGTCTCCGCAATCT +
Preference number: 4 (lower is better)
Translates to: LCPLALPSGATSFPSELIPEGHR*MLSPQS
Trigger: AGATTGCGGAGACAGCATTCAGCGGTGGCCCTCTGG...AATTAACTCAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGAGTTAATTCAGCCGTGGTGGAGTTaGTGGAGTTCGCTCCTGTGC +
Preference number: 4 (lower is better)
Translates to: LCPLALPSGATSFPSELIQPWWS*WSSLLC
Trigger: GCACAGGAGCGAACTCCACCAACTCCACCACGGCTG...AATTAACTCAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp CTGGCTGTGGCTGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCCAAGCGACACCAAGCTaGGGACAGCCGTGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: LAVAGAVLNSSPGPKISGQATPS*GQPWWS
Trigger: ACTCCACCACGGCTGTCCCCAGCTTGGTGTCGCTTG...GCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCAGCCACAGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGAGTTAATTGGCTCGCAGATGAGCTaGCTCTCCTGGCACACCTGT +
Preference number: 4 (lower is better)
Translates to: LCPLALPSGATSFPSELIGSQMS*LSWHTC
Trigger: ACAGGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCC...AATTAACTCAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp CCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAGCGGTACTAGGGCTCCGGCACAACTaGAGAGCAGGAGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: PCGFGVNWDALAVAGAVLGLRHN*RAGGPL
Trigger: AAGGGGACCTCCTGCTCTTCAGTTGTGCCGGAGCCC...TAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGGGGCTCCGGCACAACTaGAGAGCAGGAGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQGLRHN*RAGGPL
Trigger: AAGGGGACCTCCTGCTCTTCAGTTGTGCCGGAGCCC...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CCAGAAATTAGGACCAAGCTATGTAGGGGGAGGGGGAGGAAGGGACACACACACGTCCACTCCATAGTCTaGGTAGCAGGGGTCCGAGCG +
Preference number: 4 (lower is better)
Translates to: PEIRTKLCRGRGRKGHTHVHSIV*VAGVRA
Trigger: CGCTCGGACCCCTGCTACGCAGACTATGGAGTGGAC...GTGTGTGTGTCCCTTCCTCCCCCTCCCCCTACATAGCTTGGTCCTAATTTCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR GCA 90 bp GCCCCTCTGCACCCTGCTTGGCGCTGCAGAACAAGAAGGGCCCGAAGGTGGGCGAGAAACTATCCACTTTaGCATACACAAGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: APLHPAWRCRTRRARRWARNYPL*HTQGTG
Trigger: ACCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCT...CGCCCACCTTCGGGCCCTTCTTGTTCTGCAGCGCCAAGCAGGGTGCAGAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CTGGCTGTGGCTGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCACCTGTTTGCAGGACTaGCCTGGCTCAGCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: LAVAGAVLNSSPGPKISGTCLQD*PGSASF
Trigger: GAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGT...GCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCAGCCACAGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGACATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGGGCTCGCAGATGAGCTaGCTCTCCTGGCACACCTGT +
Preference number: 4 (lower is better)
Translates to: RHLFSLLPPVTRSEAPQWGSQMS*LSWHTC
Trigger: ACAGGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCC...CCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp TTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGAGTTAATTGGTCTTGTGGCCTTTTaGCTGGGCATAGCTCGCATG +
Preference number: 4 (lower is better)
Translates to: LCPLALPSGATSFPSELIGLVAF*LGIARM
Trigger: CATGCGAGCTATGCCCAGTCAAAAGGCCACAAGACC...AATTAACTCAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GGGGAGGGGGAGGAAGGGACACACACACACAGGAAAGCAGCCTCTCTCATCTGCTCCTTGTTGAGGTGTTaGAAGAAGGAAGGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: GEGEEGTHTHRKAASLICSLLRC*KKEGSQ
Trigger: CTGCGAGCCTTCCTTCTTTCAACACCTCAACAAGGA...GCAGATGAGAGAGGCTGCTTTCCTGTGTGTGTGTGTCCCTTCCTCCCCCTCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR GCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTTCGCTGGAGTTCAGGTaGTGCTCCACCACGAAGCCC +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPSLEFR*CSTTKP
Trigger: GGGCTTCGTGGTGGAGCAGCACCTGAACTCCAGCGA...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGCCTGGCACACCTGTTTaGAGGACTGCCCTGGCTCAG +
Preference number: 4 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSEPGTPV*RTALAQ
Trigger: CTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCAGG...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCAGCCGTGGTGGAGTTaGTGGAGTTCGCTCCTGTGC +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPQPWWS*WSSLLC
Trigger: GCACAGGAGCGAACTCCACCAACTCCACCACGGCTG...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp CCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAGCGGTACTAGGCCTCCAGGGGAGCTaGGCCTTCATAAGGGAATCC +
Preference number: 4 (lower is better)
Translates to: PCGFGVNWDALAVAGAVLGLQGS*AFIRES
Trigger: GGATTCCCTTATGAAGGCCCAGCTCCCCTGGAGGCC...TAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCGGCCTCCAGGGGAGCTaGGCCTTCATAAGGGAATCC +
Preference number: 4 (lower is better)
Translates to: GYVPFSCHLPSTPGIHQFGLQGS*AFIRES
Trigger: GGATTCCCTTATGAAGGCCCAGCTCCCCTGGAGGCC...GAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGACCGTGGTGGAGTTGGTaGAGTTCGCTCCTGTGCCGT +
Preference number: 4 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGPWWSW*SSLLCR
Trigger: ACGGCACAGGAGCGAACTCCACCAACTCCACCACGG...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGGAGATCCGGATGTCATaGCCCAGCAGGTACAGAGAT +
Preference number: 4 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVEIRMS*PSRYRD
Trigger: ATCTCTGTACCTGCTGGGCCATGACATCCGGATCTC...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACTCTGTCTCCTACAGTTaGACAGCCAGACCGGTTTCC +
Preference number: 4 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDSVSYS*TARPVS
Trigger: GGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGA...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTGGCGGCCACATCACTTaGCCATGGCAGAAGTCCTGT +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPGGHIT*PWQKSC
Trigger: ACAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCC...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp CAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCCCACAGTGCTTGCTCTTaGGGTAGAAGGAGGGCACCA +
Preference number: 4 (lower is better)
Translates to: QCCDSDWLCFQGHFPPPPHSACS*GRRRAP
Trigger: TGGTGCCCTCCTTCTACCCCAAGAGCAAGCACTGTG...GGGAGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTCGCTGGTGTGTGGGGTaGGCTCCGGCACAACTGAAG +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCRWCVG*APAQLK
Trigger: CTTCAGTTGTGCCGGAGCCCACCCCACACACCAGCG...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GCCTCTCTCATCTGCAGCCCAGCCTGTCTTTGGAACTaGGTGGGGCCCTCAGGACACCACAGGCATTTATTT +
Preference number: 4 (lower is better)
Translates to: ASLICSPACLWN*VGPSGHHRHLF
Trigger: AAATAAATGCCTGTGGTGTCCTGAGGGCCCCACCAAGTTCCAAAGACAGGCTGGGCTGCAGATGAGAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp GAGATAGGGTCTGGTCCTGAGGGTACTAAAGGATTCTaGGCACCCTTGGCCCTAGTCTGGGGGTGCATGTGT +
Preference number: 4 (lower is better)
Translates to: EIGSGPEGTKGF*APLALVWGCMC
Trigger: ACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTTAGTACCCTCAGGACCAGACCCTATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp CCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAGCGGTACTATCGCTCCTGTGCCGTTaGCCAGATTGTCCACCTTTG +
Preference number: 4 (lower is better)
Translates to: PCGFGVNWDALAVAGAVLSLLCR*PDCPPL
Trigger: CAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGA...TAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GAATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGGTGTTGGCTTGCCAATaGAGAAGTCTGTGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: ECLCAPWPCPVEPRLSRLVLACQ*RSLCFC
Trigger: GCAAAAACACAGACTTCTTCATTGGCAAGCCAACAC...CAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp ATTCCTTACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTCACCTGCAGGGCGCTaGGGGGCGGCCACATCACTT +
Preference number: 4 (lower is better)
Translates to: IPYIEENPGSCSNLFPCGSPAGR*GAATSL
Trigger: AAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGA...ACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GAATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGGGTCCTTTTCCTTGTTaGGGTGTTGAAAGAAGGAAG +
Preference number: 4 (lower is better)
Translates to: ECLCAPWPCPVEPRLSRLGPFPC*GVERRK
Trigger: CTTCCTTCTTTCAACACCTCAACAAGGAAAAGGACC...CAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACGTCCTTGTACAGTTCTaGGCTTTGGCAGGTCACCTT +
Preference number: 4 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDVLVQF*ALAGHL
Trigger: AAGGTGACCTGCCAAAGCTCAGAACTGTACAAGGAC...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACGTCCCTGTTCTCCTCTaGCAGTGCCTTAATGTACCT +
Preference number: 4 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDVPVLL*QCLNVP
Trigger: AGGTACATTAAGGCACTGGCAGAGGAGAACAGGGAC...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp ACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTGAATGTCCACTCCATAGTCTaGGTAGCAGGGGTCCGAGCG +
Preference number: 4 (lower is better)
Translates to: TKLKPWTKDLRLWSESLNVHSIV*VAGVRA
Trigger: CGCTCGGACCCCTGCTACGCAGACTATGGAGTGGAC...ATTCAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp GGGGAGGGGGAGGAAGGGACACACACACACAGGAAAGCAGCCTCTCTCATCTGCACAAGGGACTGGTTCTaGCTTTTGATCTCGTTGATG +
Preference number: 4 (lower is better)
Translates to: GEGEEGTHTHRKAASLICTRDWF*LLISLM
Trigger: CATCAACGAGATCAAAAGGCAGAACCAGTCCCTTGT...GCAGATGAGAGAGGCTGCTTTCCTGTGTGTGTGTGTCCCTTCCTCCCCCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR GCA 90 bp ACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTGAATCCTGGCACACCTGTTTaGAGGACTGCCCTGGCTCAG +
Preference number: 4 (lower is better)
Translates to: TKLKPWTKDLRLWSESLNPGTPV*RTALAQ
Trigger: CTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCAGG...ATTCAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp ATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCTCTGTCTCCTACAGTTaGACAGCCAGACCGGTTTCC +
Preference number: 4 (lower is better)
Translates to: MCLLAAICQAHLGSTSSGSVSYS*TARPVS
Trigger: GGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGA...GCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp TCTGGTCCTGAGGGTACTAAAGGATTCTTGGCACCCTaGGCCCTAGTCTGGGGGTGCATGTGTATACACCAC +
Preference number: 4 (lower is better)
Translates to: SGPEGTKGFLAP*ALVWGCMCIHH
Trigger: GTGGTGTATACACATGCACCCCCAGACTAGGGCCAAGGGTGCCAAGAATCCTTTAGTACCCTCAGGACCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGCTGTCTCCGCAATCTTaGAGCCCGATTCCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQLSPQS*SPIPWS
Trigger: TGACCAAGGAATCGGGCTTCAAGATTGCGGAGACAG...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp ATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCTGCTTTTGGGAGGGTTaGACTTGGGGTTCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: MCLLAAICQAHLGSTSSGCFWEG*TWGSGK
Trigger: CTTTCCTGAACCCCAAGTTCAACCCTCCCAAAAGCA...GCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp ATTCTTACCCAAATCCTTCTCCAAGTTCAAGGACAGCTCCTGGAGCCTACGATGAGGAAGGCTCGCAGATaGGCTGGCTCTCCTGGCACA +
Preference number: 4 (lower is better)
Translates to: ILTQILLQVQGQLLEPTMRKARR*AGSPGT
Trigger: TGTGCCAGGAGAGCCAGCTCATCTGCGAGCCTTCCT...CATCGTAGGCTCCAGGAGCTGTCCTTGAACTTGGAGAAGGATTTGGGTAAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCGGTCCTTTTCCTTGTTaGGGTGTTGAAAGAAGGAAG +
Preference number: 4 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFGPFPC*GVERRK
Trigger: CTTCCTTCTTTCAACACCTCAACAAGGAAAAGGACC...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR GCA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCGGAGAAGAAACTaGAGGTCACGTCCACTGAGA +
Preference number: 4 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSESRRRN*RSRPLR
Trigger: TCTCAGTGGACGTGACCTGCAGTTTCTTCTCCGGGA...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCCGCCGATGAAGACTTCTaGGTAAGGATGCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: QCCDSDWLCFQGHFPPPPADEDF*VRMLGC
Trigger: ACATCCCAGCATCCTTACGCAGAAGTCTTCATCGGC...GGGAGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp GGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCGGAACACACAGTGCTTaGTCTTGGGGTAGAAGGAGG +
Preference number: 4 (lower is better)
Translates to: GYVPFSCHLPSTPGIHQFGTHSA*SWGRRR
Trigger: CCTCCTTCTACCCCAAGAGCAAGCACTGTGTGTTCC...GAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GTGTGGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTGAGATCCGGATGTCATaGCCCAGCAGGTACAGAGAT +
Preference number: 4 (lower is better)
Translates to: VWVRVLNWGRGIGMWRDPEIRMS*PSRYRD
Trigger: ATCTCTGTACCTGCTGGGCCATGACATCCGGATCTC...AGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GCTCCACCAGGGCTGTGGGTGCCTTCTTTGCTGTCTTCCACACCTGACAGGTTCGAATGTTCTTGGTACTaGAGCCATAAACAGTGGCGT +
Preference number: 4 (lower is better)
Translates to: APPGLWVPSLLSSTPDRFECSWY*SHKQWR
Trigger: ACGCCACTGTTTATGGCTCCAGTACCAAGAACATTC...GAACCTGTCAGGTGTGGAAGACAGCAAAGAAGGCACCCACAGCCCTGGTGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAATGAGCTGGCTCTCCTaGCACACCTGTTTGCAGGAC +
Preference number: 4 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGMSWLS*HTCLQD
Trigger: GTCCTGCAAACAGGTGTGCCAGGAGAGCCAGCTCAT...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp ACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTGAATTTGCAGAGGGCCACTTaGCCCTTGATGAAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: TKLKPWTKDLRLWSESLNLQRAT*PLMKSR
Trigger: CCGGGACTTCATCAAGGGCCAAGTGGCCCTCTGCAA...ATTCAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GGGTGGACAATGCTAACAGCAAGAGGTAGAAGAGGATaGGTTCACTCGCCAGCATGGAGAGAACTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: GWTMLTARGRRG*VHSPAWRELWE
Trigger: CTCCCACAGTTCTCTCCATGCTGGCGAGTGAACCAATCCTCTTCTACCTCTTGCTGTTAGCATTGTCCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp AGTTTCCCCTTGATGGGTCACTTGGCCATCCATATCTaGCTAACTGAGGAGGCCTGGGAGCTGTCGTCCATT +
Preference number: 4 (lower is better)
Translates to: SFPLMGHLAIHI*LTEEAWELSSI
Trigger: AATGGACGACAGCTCCCAGGCCTCCTCAGTTAGCAAGATATGGATGGCCAAGTGACCCATCAAGGGGAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp TACACAGGTCAGGTCAGTTTCCCCTTGATGGGTCACTaGGCCATCCATATCTTGCTAACTGAGGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: YTGQVSFPLMGH*AIHILLTEEAW
Trigger: CCAGGCCTCCTCAGTTAGCAAGATATGGATGGCCAAGTGACCCATCAAGGGGAAACTGACCTGACCTGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTGCATCATGCCCCAGATaGAGCCGAAAGTCACCAGGA +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCASCPR*SRKSPG
Trigger: TCCTGGTGACTTTCGGCTTCATCTGGGGCATGATGC...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGACTGTCTCCGCAATCTTaGAGCCCGATTCCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGLSPQS*SPIPWS
Trigger: TGACCAAGGAATCGGGCTTCAAGATTGCGGAGACAG...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGGGTCTTGTGGCCTTTTaGCTGGGCATAGCTCGCATG +
Preference number: 4 (lower is better)
Translates to: GMGFITREKELFWVVWVRGLVAF*LGIARM
Trigger: CATGCGAGCTATGCCCAGTCAAAAGGCCACAAGACC...CCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GTGTGGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTGGGTATGAGGGAACATaGTGTAAAACTGCTGCGGGT +
Preference number: 4 (lower is better)
Translates to: VWVRVLNWGRGIGMWRDPGYEGT*CKTAAG
Trigger: ACCCGCAGCAGTTTTACACCATGTTCCCTCATACCC...AGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTGGAGCCATAAACAGTaGCGTGCACTTCCATGTACG +
Preference number: 4 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSEWSHKQ*RALPCT
Trigger: CGTACATGGAAGTGCACGCCACTGTTTATGGCTCCA...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGAGTTAATTGAATGTTCTTGGTACTaGAGCCATAAACAGTGGCGT +
Preference number: 4 (lower is better)
Translates to: LCPLALPSGATSFPSELIECSWY*SHKQWR
Trigger: ACGCCACTGTTTATGGCTCCAGTACCAAGAACATTC...AATTAACTCAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GGAATGGGATTTATAACACGGGAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGATGAGCTGGCTCTCCTaGCACACCTGTTTGCAGGAC +
Preference number: 4 (lower is better)
Translates to: GMGFITREKELFWVVWVRMSWLS*HTCLQD
Trigger: GTCCTGCAAACAGGTGTGCCAGGAGAGCCAGCTCAT...CCTGACCCACACAACCCAGAAGAGCTCTTTCTCCCGTGTTATAAATCCCATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp TTATGTAGCCAAGGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTCGCTGGTGTGTGGGGTaGGCTCCGGCACAACTGAAG +
Preference number: 4 (lower is better)
Translates to: LCSQGECLVLLTLFLTCIRWCVG*APAQLK
Trigger: CTTCAGTTGTGCCGGAGCCCACCCCACACACCAGCG...AATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAAAAAAGCCCAGCTTCTaGGAGGACAACTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGKKPSF*EDNFQG
Trigger: TCCCTGGAAGTTGTCCTCTCAGAAGCTGGGCTTTTT...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGTCGCTCCTGTGCCGTTaGCCAGATTGTCCACCTTTG +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGSLLCR*PDCPPL
Trigger: CAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGA...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp TTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTATGCCAGAGGGCCACCGCTaGATGCTGTCTCCGCAATCT +
Preference number: 4 (lower is better)
Translates to: FLTCIYVVLGMEPRTSFMPEGHR*MLSPQS
Trigger: AGATTGCGGAGACAGCATTCAGCGGTGGCCCTCTGG...CATAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp ATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCGCAGGTACAGAGATGTaGTTAAGTCACTCCACTGAA +
Preference number: 4 (lower is better)
Translates to: MCLLAAICQAHLGSTSSGAGTEM*LSHSTE
Trigger: TTCAGTGGAGTGACTTAATCACATCTCTGTACCTGC...GCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTACCTGTTTGCAGGACTaGCCTGGCTCAGCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGTCLQD*PGSASF
Trigger: GAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGT...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTGGAACACACAGTGCTTaGTCTTGGGGTAGAAGGAGG +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCGTHSA*SWGRRR
Trigger: CCTCCTTCTACCCCAAGAGCAAGCACTGTGTGTTCC...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TTATGTAGCCAAGGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTAGCTGGGGACAGCCGTaGTGGAGTTGGTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: LCSQGECLVLLTLFLTCISWGQP*WSWWSS
Trigger: CGAACTCCACCAACTCCACCACGGCTGTCCCCAGCT...AATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTAGAGACTTGATAGCTTaGATCCACGCGTCAGCCATT +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPRDLIA*IHASAI
Trigger: AATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCT...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp GTGTGGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTCAGCTCTCTCAGTGTTaGCTTGCCAATGAAGAAGTC +
Preference number: 4 (lower is better)
Translates to: VWVRVLNWGRGIGMWRDPQLSQC*LANEEV
Trigger: GACTTCTTCATTGGCAAGCCAACACTGAGAGAGCTG...AGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp CGCTCGATCTCCCAGACAGAGAGGACATTCCTTACATaGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCC +
Preference number: 4 (lower is better)
Translates to: RSISQTERTFLT*RRTQVPVLTCS
Trigger: GGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAATGTCCTCTCTGTCTGGGAGATCGAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GAGAAAGAGCTCTTCTGGGTTGTGTGGGTCAGGGTCTaGAACTGGGGAAGAGGAATAGGAATGTGGAGAGAC +
Preference number: 4 (lower is better)
Translates to: EKELFWVVWVRV*NWGRGIGMWRD
Trigger: GTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACACAACCCAGAAGAGCTCTTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTAAAAAGCCCAGCTTCTaGGAGGACAACTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCKKPSF*EDNFQG
Trigger: TCCCTGGAAGTTGTCCTCTCAGAAGCTGGGCTTTTT...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGCAGATTGTCCACCTTTaGCTCGAGCTTGCCAATGCG +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGQIVHL*LELANA
Trigger: CGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTG...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGTGTCCTTCATCCACTTaGTTTTCCCCTCGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGCPSST*FSPRSG
Trigger: CCCACTGCGAGGGGAAAATCAAGTGGATGAAGGACA...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp TGGCAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTGCAGGTACAGAGATGTaGTTAAGTCACTCCACTGAA +
Preference number: 4 (lower is better)
Translates to: WQCCDSDWLCFQGHFPPPAGTEM*LSHSTE
Trigger: TTCAGTGGAGTGACTTAATCACATCTCTGTACCTGC...AGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTGTCCTTGTACAGTTCTaGGCTTTGGCAGGTCACCTT +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCVLVQF*ALAGHL
Trigger: AAGGTGACCTGCCAAAGCTCAGAACTGTACAAGGAC...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGACAAGGGACTGGTTCTaGCTTTTGATCTCGTTGATG +
Preference number: 4 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQTRDWF*LLISLM
Trigger: CATCAACGAGATCAAAAGGCAGAACCAGTCCCTTGT...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GGTAGGAGAGTTTTTGGGCCACTCACAGGATTAATCTaGGGTAGGATGGGAATGTGGCAGAGGTGTAACCAG +
Preference number: 4 (lower is better)
Translates to: GRRVFGPLTGLI*GRMGMWQRCNQ
Trigger: CTGGTTACACCTCTGCCACATTCCCATCCTACCCAAGATTAATCCTGTGAGTGGCCCAAAAACTCTCCTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp TCAAAAGGTCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATTGGTGGTTCGCATCATGCCCCAGATaGAGCCGAAAGTCACCAGGA +
Preference number: 4 (lower is better)
Translates to: SKGPSKKPLECSRTYWWFASCPR*SRKSPG
Trigger: TCCTGGTGACTTTCGGCTTCATCTGGGGCATGATGC...GAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGACCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTGTCAGGAGCCCCAGGTaGACAAGGATTTTCTTCCGT +
Preference number: 4 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGVRSPR*TRIFFR
Trigger: ACGGAAGAAAATCCTTGTTCACCTGGGGCTCCTGAC...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTTTTGCTTTTGGGAGGGTTaGACTTGGGGTTCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: DRPQSPSQLAQFPLPVLFCFWEG*TWGSGK
Trigger: CTTTCCTGAACCCCAAGTTCAACCCTCCCAAAAGCA...AAACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp GATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTTTTCCTTGTTGAGGTGTTaGAAGAAGGAAGGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: DRPQSPSQLAQFPLPVLFSLLRC*KKEGSQ
Trigger: CTGCGAGCCTTCCTTCTTTCAACACCTCAACAAGGA...AAACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTTGCTGGATGGTGAAGTaGAGAAGCATCATGCCCCAG +
Preference number: 4 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGCWMVK*RSIMPQ
Trigger: CTGGGGCATGATGCTTCTGCACTTCACCATCCAGCA...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp ATTCCTTACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTCCTTTGACTCGAGCTTaGCAATGCGCTGCAGGATGT +
Preference number: 4 (lower is better)
Translates to: IPYIEENPGSCSNLFPCGPLTRA*QCAAGC
Trigger: ACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGG...ACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR GCA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGAGAAACTATCCACTTTaGCATACACAAGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSERNYPL*HTQGTG
Trigger: ACCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCT...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGGGGTATGAGGGAACATaGTGTAAAACTGCTGCGGGT +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGGYEGT*CKTAAG
Trigger: ACCCGCAGCAGTTTTACACCATGTTCCCTCATACCC...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp ATTCCTTACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTGTGGTGAATGTCGCTaGAGTTCAGGTGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: IPYIEENPGSCSNLFPCGCGECR*SSGAAP
Trigger: TGGAGCAGCACCTGAACTCCAGCGACATTCACCACA...ACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTAAGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTCCATACACAAGGGACTaGTTCTGCCTTTTGATCTCG +
Preference number: 4 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCPYTRD*FCLLIS
Trigger: CGAGATCAAAAGGCAGAACCAGTCCCTTGTGTATGG...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp ATTCTTACCCAAATCCTTCTCCAAGTTCAAGGACAGCTCCTGGAGCCTACGATGTGGAGCCATAAACAGTaGCGTGCACTTCCATGTACG +
Preference number: 4 (lower is better)
Translates to: ILTQILLQVQGQLLEPTMWSHKQ*RALPCT
Trigger: CGTACATGGAAGTGCACGCCACTGTTTATGGCTCCA...CATCGTAGGCTCCAGGAGCTGTCCTTGAACTTGGAGAAGGATTTGGGTAAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CCA 90 bp GGCCCGAAGGTGGGCGAATTAACAGTGAGGAACAAAAGGAAACTGTTCAACCCCCACATCACTTGGCCATaGCAGAAGTCCTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: GPKVGELTVRNKRKLFNPHITWP*QKSCFS
Trigger: TGAAAAACAGGACTTCTGCCATGGCCAAGTGATGTG...GGGGTTGAACAGTTTCCTTTTGTTCCTCACTGTTAATTCGCCCACCTTCGGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TGTTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTACACAGTGCTTGCTCTTaGGGTAGAAGGAGGGCACCA +
Preference number: 4 (lower is better)
Translates to: CFLPAFMWCWGWNPGLHLHSACS*GRRRAP
Trigger: TGGTGCCCTCCTTCTACCCCAAGAGCAAGCACTGTG...TAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GTTCAATGCCCATACACAGGTCAGGTCAGTTTCCCCTaGATGGGTCACTTGGCCATCCATATCTTGCTAACT +
Preference number: 4 (lower is better)
Translates to: VQCPYTGQVSFP*MGHLAIHILLT
Trigger: AGTTAGCAAGATATGGATGGCCAAGTGACCCATCAAGGGGAAACTGACCTGACCTGTGTATGGGCATTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp TGTTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTACAGATTGTCCACCTTTaGCTCGAGCTTGCCAATGCG +
Preference number: 4 (lower is better)
Translates to: CFLPAFMWCWGWNPGLHLQIVHL*LELANA
Trigger: CGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTG...TAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp TTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTATGGTCAGGAGCCCCAGGTaGACAAGGATTTTCTTCCGT +
Preference number: 4 (lower is better)
Translates to: FLTCIYVVLGMEPRTSFMVRSPR*TRIFFR
Trigger: ACGGAAGAAAATCCTTGTTCACCTGGGGCTCCTGAC...CATAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp ACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGTCCCTGAATGTGTTGGCTTGCCAATaGAGAAGTCTGTGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: TKLKPWTKDLRLWSESLNVLACQ*RSLCFC
Trigger: GCAAAAACACAGACTTCTTCATTGGCAAGCCAACAC...ATTCAGGGACTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGCCATACACAAGGGACTaGTTCTGCCTTTTGATCTCG +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGPYTRD*FCLLIS
Trigger: CGAGATCAAAAGGCAGAACCAGTCCCTTGTGTATGG...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR TCA 90 bp CAAGGTTATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGAGTGTTTTCTTAAATTaGGCAAGTCCCACAATATCG +
Preference number: 4 (lower is better)
Translates to: QGYVPFSCHLPSTPGIHQSVFLN*ASPTIS
Trigger: CGATATTGTGGGACTTGCTCAATTTAAGAAAACACT...CTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACATAACCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTCAGAAAGCTGTTGTCTaGGGTATGAGGGAACATGGT +
Preference number: 4 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGQKAVV*GMREHG
Trigger: ACCATGTTCCCTCATACCCCAGACAACAGCTTTCTG...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTCAGCTCTCTCAGTGTTaGCTTGCCAATGAAGAAGTC +
Preference number: 4 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGQLSQC*LANEEV
Trigger: GACTTCTTCATTGGCAAGCCAACACTGAGAGAGCTG...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGCACATCACTTGGCCATaGCAGAAGTCCTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGHITWP*QKSCFS
Trigger: TGAAAAACAGGACTTCTGCCATGGCCAAGTGATGTG...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CCA 90 bp TGTTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTACAGAAAGCTGTTGTCTaGGGTATGAGGGAACATGGT +
Preference number: 4 (lower is better)
Translates to: CFLPAFMWCWGWNPGLHLQKAVV*GMREHG
Trigger: ACCATGTTCCCTCATACCCCAGACAACAGCTTTCTG...TAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp GAAGTGACAGTAGAAAACAAGCGAACCAGGATCCATTaGAAGACACAGACGTCAACGGCCATGAGCTTAACA +
Preference number: 4 (lower is better)
Translates to: EVTVENKRTRIH*KTQTSTAMSLT
Trigger: TGTTAAGCTCATGGCCGTTGACGTCTGTGTCTTCAAATGGATCCTGGTTCGCTTGTTTTCTACTGTCACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR GCA 90 bp TCCCAGCCAAAGAACAGACAGCTATTTCCAAACACTCACCTAAAACAAACGATTGCCGATGAAGACTTCTaGGTAAGGATGCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: SQPKNRQLFPNTHLKQTIADEDF*VRMLGC
Trigger: ACATCCCAGCATCCTTACGCAGAAGTCTTCATCGGC...AATCGTTTGTTTTAGGTGAGTGTTTGGAAATAGCTGTCTGTTCTTTGGCTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp CACCTATTGCTAATTCTCTTAATAACTAGACTAGGCTaGGTTAGTCCCAAGAGCAGGAACACACCAGAGGAA +
Preference number: 4 (lower is better)
Translates to: HLLLILLITRLG*VSPKSRNTPEE
Trigger: TTCCTCTGGTGTGTTCCTGCTCTTGGGACTAACCAAGCCTAGTCTAGTTATTAAGAGAATTAGCAATAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR TCA 90 bp AGCATTCTACAAACTGAGCTACATCCCCCTGCTTATAGACATCTCTTTTCTCTGAGTGTTTTCTTAAATTaGGCAAGTCCCACAATATCG +
Preference number: 4 (lower is better)
Translates to: SILQTELHPPAYRHLFSLSVFLN*ASPTIS
Trigger: CGATATTGTGGGACTTGCTCAATTTAAGAAAACACT...CAGAGAAAAGAGATGTCTATAAGCAGGGGGATGTAGCTCAGTTTGTAGAATGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
3UTR CAA 72 bp TCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATaGGTGGTTCAATTTCAGGTAATAAATTCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: SLKETPGMFQNI*VVQFQVINSAL
Trigger: CAAGGCTGAATTTATTACCTGAAATTGAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
3UTR CAA 72 bp ATATTGGTGGTTCAATTTCAGGTAATAAATTCAGCCTaGTTTCACAGAGTGCTGAAGACTGGCAAATTTCCC +
Preference number: 4 (lower is better)
Translates to: ILVVQFQVINSA*FHRVLKTGKFP
Trigger: GGGAAATTTGCCAGTCTTCAGCACTCTGTGAAACAAGGCTGAATTTATTACCTGAAATTGAACCACCAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS GCA 90 bp GGCTCGCAGATGAGCTGGCTCTCCTGGCACACCTGTTTGCAGGACTaGCCTGGCTCAGCCAGCTTCACCTGCAGGGCGCTGAGGGGCGGC +
Preference number: 5 (lower is better)
Translates to: GSQMSWLSWHTCLQD*PGSASFTCRALRGG
Trigger: GCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 90 bp TGGCACACCTGTTTGCAGGACTGCCCTGGCTCAGCCAGCTTCACCTaGAGGGCGCTGAGGGGCGGCCACATCACTTGGCCATGGCAGAAG +
Preference number: 5 (lower is better)
Translates to: WHTCLQDCPGSASFT*RALRGGHITWPWQK
Trigger: CTTCTGCCATGGCCAAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp CTGAGGTCAAGGATCTGCTCCCGTAACATGGAGCTGCTCTCGGGCTaGGTCCGCTGCTGGATGGTGAAGTGCAGAAGCATCATGCCCCAG +
Preference number: 5 (lower is better)
Translates to: LRSRICSRNMELLSG*VRCWMVKCRSIMPQ
Trigger: CTGGGGCATGATGCTTCTGCACTTCACCATCCAGCAGCGGACTCAGCCCGAGAGCAGCTCCATGTTACGGGAGCAGATCCTTGACCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp TGGGGACAGCCGTGGTGGAGTTGGTGGAGTTCGCTCCTGTGCCGTTaGCCAGATTGTCCACCTTTGACTCGAGCTTGCCAATGCGCTGCA +
Preference number: 5 (lower is better)
Translates to: WGQPWWSWWSSLLCR*PDCPPLTRACQCAA
Trigger: TGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGGCTGTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GTGTGGGTCAGGGTCTTGAACTGGGGAAGAGGAATAGGAATGTGGAGAGACCCTGGGCGGCCACATCACTaGGCCATGGCAGAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: VWVRVLNWGRGIGMWRDPGRPHH*AMAEVL
Trigger: CAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCCC...AGGGTCTCTCCACATTCCTATTCCTCTTCCCCAGTTCAAGACCCTGACCCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CAA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACGAGCAGGAGGTCCCCTaGGAACACACAGTGCTTGCT +
Preference number: 5 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDEQEVP*EHTVLA
Trigger: AGCAAGCACTGTGTGTTCCAAGGGGACCTCCTGCTC...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 90 bp CATGACACCAGCGTAGGGGCCATCCACCACGTCCCTGTTCTCCTCTaGCAGTGCCTTAATGTACCTCTTGCTGAGGTCAAGGATCTGCTC +
Preference number: 5 (lower is better)
Translates to: HDTSVGAIHHVPVLL*QCLNVPLAEVKDLL
Trigger: GAGCAGATCCTTGACCTCAGCAAGAGGTACATTAAGGCACTGGCAGAGGAGAACAGGGACGTGGTGGATGGCCCCTACGCTGGTGTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGACCTTTGACTCGAGCTaGCCAATGCGCTGCAGGATG +
Preference number: 5 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVTFDSS*PMRCRM
Trigger: CATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGT...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCCCAGATTGTCCACCTTaGACTCGAGCTTGCCAATGC +
Preference number: 5 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPPDCPP*TRACQC
Trigger: GCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGG...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGTTCTCCGCCAGAGACTaGATAGCTTGGATCCACGCG +
Preference number: 5 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVFSARD*IAWIHA
Trigger: CGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAA...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GAATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGTTCTTCATTATCTCCTaGAGCTCAGCCAGTGAGGCC +
Preference number: 5 (lower is better)
Translates to: ECLCAPWPCPVEPRLSRLFFIIS*SSASEA
Trigger: GGCCTCACTGGCTGAGCTCAAGGAGATAATGAAGAA...CAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCCCTTCTGTCTCCTACAGTaGGACAGCCAGACCGGTTTC +
Preference number: 5 (lower is better)
Translates to: HLFSLLPPVTRSEAPQWPFCLLQ*DSQTGF
Trigger: GAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAA...GGGCCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp TATCCAGCAAGACGGCGAGCGTTTTCTTCAGATCATAGGCTGTCATaGCACCAGCGTAGGGGCCATCCACCACGTCCCTGTTCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: YPARRRAFSSDHRLS*HQRRGHPPRPCSPL
Trigger: CAGAGGAGAACAGGGACGTGGTGGATGGCCCCTACGCTGGTGTCATGACAGCCTATGATCTGAAGAAAACGCTCGCCGTCTTGCTGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp CCCAGGGGGTCTTGTGGCCTTTTGACTGGGCATAGCTCGCATGATTaGACTCAGGTTCTGTTCCAAAGGAGTCTAGCACCCGGAGCATGC +
Preference number: 5 (lower is better)
Translates to: PRGSCGLLTGHSSHD*TQVLFQRSLAPGAC
Trigger: GCATGCTCCGGGTGCTAGACTCCTTTGGAACAGAACCTGAGTTCAATCATGCGAGCTATGCCCAGTCAAAAGGCCACAAGACCCCCTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GAATGTCTTTGTGCCCCTTGGCCCTGCCCAGTGGAGCCACGTCTTTCCCGTCTGCAGAAACTATCCACTTaGCCATACACAAGGGACTGG +
Preference number: 5 (lower is better)
Translates to: ECLCAPWPCPVEPRLSRLQKLST*PYTRDW
Trigger: CCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCTG...CAGACGGGAAAGACGTGGCTCCACTGGGCAGGGCCAAGGGGCACAAAGACATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGGGCACCAGGATGTCCTaGTACAGTTCTGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVGTRMS*YSSELW
Trigger: CCAAAGCTCAGAACTGTACAAGGACATCCTGGTGCC...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTTTAGGGCCACTTGGCCCTaGATGAAGTCCCGGCAGGGG +
Preference number: 5 (lower is better)
Translates to: DRPQSPSQLAQFPLPVLFRATWP*MKSRQG
Trigger: CCCCTGCCGGGACTTCATCAAGGGCCAAGTGGCCCT...AAACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp GTTGGTGGAGTTCGCTCCTGTGCCGTTGACCAGATTGTCCACCTTTaGCTCGAGCTTGCCAATGCGCTGCAGGATGTTATCCAGCAAGAC +
Preference number: 5 (lower is better)
Translates to: VGGVRSCAVDQIVHL*LELANALQDVIQQD
Trigger: GTCTTGCTGGATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGACCTTTGACTCGAGCTaGCCAATGCGCTGCAGGATG +
Preference number: 5 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSETFDSS*PMRCRM
Trigger: CATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGT...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CCAGAAATTAGGACCAAGCTATGTAGGGGGAGGGGGAGGAAGGGACACACACACCAGAGACTTGATAGCTaGGATCCACGCGTCAGCCAT +
Preference number: 5 (lower is better)
Translates to: PEIRTKLCRGRGRKGHTHQRLDS*DPRVSH
Trigger: ATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTG...GTGTGTGTGTCCCTTCCTCCCCCTCCCCCTACATAGCTTGGTCCTAATTTCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CAA 90 bp TGGAGCGGTACTAAACTCAAGCCCTGGACCAAAGATCTCAGGCTCTGGTCAGAGGCTGTCTCCGCAATCTaGAAGCCCGATTCCTTGGTC +
Preference number: 5 (lower is better)
Translates to: WSGTKLKPWTKDLRLWSEAVSAI*KPDSLV
Trigger: GACCAAGGAATCGGGCTTCAAGATTGCGGAGACAGC...CTCTGACCAGAGCCTGAGATCTTTGGTCCAGGGCTTGAGTTTAGTACCGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CAATGCTGTGACAGTGACTGGCTGTGTTTTCAAGGCCATTTCCCTCCCCCTCCCAGCCCAACGAACAGCTaGGTTTCCCGGAGAAGAAAC +
Preference number: 5 (lower is better)
Translates to: QCCDSDWLCFQGHFPPPPSPTNS*VSRRRN
Trigger: GTTTCTTCTCCGGGAAACCAAGCTGTTCGTTGGGCT...GGGAGGGGGAGGGAAATGGCCTTGAAAACACAGCCAGTCACTGTCACAGCATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp ATGTGCCTTTTAGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAGCCCAACGAACAGCTaGGTTTCCCGGAGAAGAAAC +
Preference number: 5 (lower is better)
Translates to: MCLLAAICQAHLGSTSSGSPTNS*VSRRRN
Trigger: GTTTCTTCTCCGGGAAACCAAGCTGTTCGTTGGGCT...GCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCTAAAAGGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACAGTGCTGCTTTTGGGAGGGTaGAACTTGGGGTTCAGGAAA +
Preference number: 5 (lower is better)
Translates to: AICQAHLGSTSSGNAVTVLLLGG*NLGFRK
Trigger: TTTCCTGAACCCCAAGTTCAACCCTCCCAAAAGCAG...CACTGTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp CCGGTTTCCAACAACCTTCTTCATTATCTCCTTGAGCTCAGCCAGTaGGGCCGAGATCCGGATGTCATGGCCCAGCAGGTACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: PVSNNLLHYLLELSQ*GRDPDVMAQQVQRC
Trigger: ACATCTCTGTACCTGCTGGGCCATGACATCCGGATCTCGGCCTCACTGGCTGAGCTCAAGGAGATAATGAAGAAGGTTGTTGGAAACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAGCGGTACTACCAGATTGTCCACCTTaGACTCGAGCTTGCCAATGC +
Preference number: 5 (lower is better)
Translates to: PCGFGVNWDALAVAGAVLPDCPP*TRACQC
Trigger: GCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGG...TAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGATTCTCCGCCAGAGACTaGATAGCTTGGATCCACGCG +
Preference number: 5 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGFSARD*IAWIHA
Trigger: CGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAA...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TACATTGAGGAGAACCCAGGTTCCTGTTCTAACCTGTTCCCTTGTGGTTTTGGTGGGCGGCCACATCACTaGGCCATGGCAGAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: YIEENPGSCSNLFPCGFGGRPHH*AMAEVL
Trigger: CAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCCC...ACCAAAACCACAAGGGAACAGGTTAGAACAGGAACCTGGGTTCTCCTCAATGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp CAGGTCACCTTATACTTCAGCAGGTCCTTTTCCTTGTTGAGGTGTTaGAAGAAGGAAGGCTCGCAGATGAGCTGGCTCTCCTGGCACACC +
Preference number: 5 (lower is better)
Translates to: QVTLYFSRSFSLLRC*KKEGSQMSWLSWHT
Trigger: GGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCCTTCCTTCTTTCAACACCTCAACAAGGAAAAGGACCTGCTGAAGTATAAGGTGACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 90 bp CCGTTGACCAGATTGTCCACCTTTGACTCGAGCTTGCCAATGCGCTaGAGGATGTTATCCAGCAAGACGGCGAGCGTTTTCTTCAGATCA +
Preference number: 5 (lower is better)
Translates to: PLTRLSTFDSSLPMR*RMLSSKTASVFFRS
Trigger: TGATCTGAAGAAAACGCTCGCCGTCTTGCTGGATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 90 bp TTCCTCTTCTCAAGGTTTTGTTTCTCCGCCAGAGACTTGATAGCTTaGATCCACGCGTCAGCCATTCGCCGGATCCGAAGCCTCATCCAA +
Preference number: 5 (lower is better)
Translates to: FLFSRFCFSARDLIA*IHASAIRRIRSLIQ
Trigger: TTGGATGAGGCTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAGAAGAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AACCTGTTCCCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGACAGAGACTTGATAGCTaGGATCCACGCGTCAGCCAT +
Preference number: 5 (lower is better)
Translates to: NLFPCGFGVNWDALAVAGQRLDS*DPRVSH
Trigger: ATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTG...TCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGGGAACAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp CCTTGTGGTTTTGGTGTAAACTGGGATGCACTGGCTGTGGCTGGAGCGGTACTATTCTTCATTATCTCCTaGAGCTCAGCCAGTGAGGCC +
Preference number: 5 (lower is better)
Translates to: PCGFGVNWDALAVAGAVLFFIIS*SSASEA
Trigger: GGCCTCACTGGCTGAGCTCAAGGAGATAATGAAGAA...TAGTACCGCTCCAGCCACAGCCAGTGCATCCCAGTTTACACCAAAACCACAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGACATCTCTTTTCTCTGCTGCCACCTGTGACCAGGAGTGAAGCCCCACAGTGGCAGAAACTATCCACTTaGCCATACACAAGGGACTGG +
Preference number: 5 (lower is better)
Translates to: RHLFSLLPPVTRSEAPQWQKLST*PYTRDW
Trigger: CCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCTG...CCACTGTGGGGCTTCACTCCTGGTCACAGGTGGCAGCAGAGAAAAGAGATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTTATGTGGTGCTGGGTTTGCAGAGGGCCACTaGGCCCTTGATGAAGTCCCG +
Preference number: 5 (lower is better)
Translates to: RMLGPPDSVSYLHLCGAGFAEGH*ALDEVP
Trigger: CGGGACTTCATCAAGGGCCAAGTGGCCCTCTGCAAA...CCCAGCACCACATAAATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTATGACAGCCGTGGTGGAGTaGGTGGAGTTCGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: FLTCIYVVLGMEPRTSFMTAVVE*VEFAPV
Trigger: CACAGGAGCGAACTCCACCAACTCCACCACGGCTGT...CATAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGCTGCCATCTGCCAAGCACACCTGGGATCCACCAGTTCTGGCAATGCTGTGACCTTCATAGGGATTTTTaGCTCTCCAAGGTAAACGAG +
Preference number: 5 (lower is better)
Translates to: SCHLPSTPGIHQFWQCCDLHRDF*LSKVNE
Trigger: CTCGTTTACCTTGGAGAGCAAAAAATCCCTATGAAG...GTCACAGCATTGCCAGAACTGGTGGATCCCAGGTGTGCTTGGCAGATGGCAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGGATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTTTCTGTCTCCTACAGTaGGACAGCCAGACCGGTTTC +
Preference number: 5 (lower is better)
Translates to: RIGPKVLPNWLNSLFLFCFCLLQ*DSQTGF
Trigger: GAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAA...ACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GGCCCGAAGGTGGGCGAATTAACAGTGAGGAACAAAAGGAAACTGTTCAACCCCTTGGGAGGGTTGAACTaGGGGTTCAGGAAAGCACAT +
Preference number: 5 (lower is better)
Translates to: GPKVGELTVRNKRKLFNPLGGLN*GFRKAH
Trigger: ATGTGCTTTCCTGAACCCCAAGTTCAACCCTCCCAA...GGGGTTGAACAGTTTCCTTTTGTTCCTCACTGTTAATTCGCCCACCTTCGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GGCCCGAAGGTGGGCGAATTAACAGTGAGGAACAAAAGGAAACTGTTCAACCCCCTGCTTTTGGGAGGGTaGAACTTGGGGTTCAGGAAA +
Preference number: 5 (lower is better)
Translates to: GPKVGELTVRNKRKLFNPLLLGG*NLGFRK
Trigger: TTTCCTGAACCCCAAGTTCAACCCTCCCAAAAGCAG...GGGGTTGAACAGTTTCCTTTTGTTCCTCACTGTTAATTCGCCCACCTTCGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp GATCGGCCCCAAAGTCCTTCCCAATTGGCTCAATTCCCTCTTCCTGTTTTGTTTGGCACCAGGATGTCCTaGTACAGTTCTGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: DRPQSPSQLAQFPLPVLFGTRMS*YSSELW
Trigger: CCAAAGCTCAGAACTGTACAAGGACATCCTGGTGCC...AAACAAAACAGGAAGAGGGAATTGAGCCAATTGGGAAGGACTTTGGGGCCGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TCAAAAGGTCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATTGGTGGTTCGAGCAGGAGGTCCCCTaGGAACACACAGTGCTTGCT +
Preference number: 5 (lower is better)
Translates to: SKGPSKKPLECSRTYWWFEQEVP*EHTVLA
Trigger: AGCAAGCACTGTGTGTTCCAAGGGGACCTCCTGCTC...GAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS TCA 90 bp CGAACAGCTTGGTTTCCCGGAGAAGAAACTGCAGGTCACGTCCACTaGGAATGCCATGGTTTTTCACGTAACTGGGAATGTTCTTGGTAC +
Preference number: 5 (lower is better)
Translates to: RTAWFPGEETAGHVH*ECHGFSRNWECSWY
Trigger: GTACCAAGAACATTCCCAGTTACGTGAAAAACCATGGCATTCTCAGTGGACGTGACCTGCAGTTTCTTCTCCGGGAAACCAAGCTGTTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TTATGTAGCCAAGGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTGCTGTCTCCGCAATCTaGAAGCCCGATTCCTTGGTC +
Preference number: 5 (lower is better)
Translates to: LCSQGECLVLLTLFLTCIAVSAI*KPDSLV
Trigger: GACCAAGGAATCGGGCTTCAAGATTGCGGAGACAGC...AATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TTATGTAGCCAAGGAGAATGCTTGGTCCTCCTGACTCTGTTTCTTACCTGCATTGGGTCTTGTGGCCTTTaGACTGGGCATAGCTCGCAT +
Preference number: 5 (lower is better)
Translates to: LCSQGECLVLLTLFLTCIGSCGL*TGHSSH
Trigger: ATGCGAGCTATGCCCAGTCAAAAGGCCACAAGACCC...AATGCAGGTAAGAAACAGAGTCAGGAGGACCAAGCATTCTCCTTGGCTACATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGCATTCTACAAACTGAGCTACATCCCCCTGCTTATAGACATCTCTTTTCTCTGGGGTCTTGTGGCCTTTaGACTGGGCATAGCTCGCAT +
Preference number: 5 (lower is better)
Translates to: SILQTELHPPAYRHLFSLGSCGL*TGHSSH
Trigger: ATGCGAGCTATGCCCAGTCAAAAGGCCACAAGACCC...CAGAGAAAAGAGATGTCTATAAGCAGGGGGATGTAGCTCAGTTTGTAGAATGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp AGCATTCTACAAACTGAGCTACATCCCCCTGCTTATAGACATCTCTTTTCTCTGTTGGGAGGGTTGAACTaGGGGTTCAGGAAAGCACAT +
Preference number: 5 (lower is better)
Translates to: SILQTELHPPAYRHLFSLLGGLN*GFRKAH
Trigger: ATGTGCTTTCCTGAACCCCAAGTTCAACCCTCCCAA...CAGAGAAAAGAGATGTCTATAAGCAGGGGGATGTAGCTCAGTTTGTAGAATGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS-3UTR CAA 90 bp TCAAAAGGTCCCTCAAAGAAACCCCTGGAATGTTCCAGAACATATTGGTGGTTCTTTTCAATGAAAGCGTaGATTCTCTGCAGCATGCCT +
Preference number: 5 (lower is better)
Translates to: SKGPSKKPLECSRTYWWFFSMKA*ILCSMP
Trigger: AGGCATGCTGCAGAGAATCAACGCTTTCATTGAAAA...GAACCACCAATATGTTCTGGAACATTCCAGGGGTTTCTTTGAGGGACCTTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038361.11
CDS-3UTR CAA 90 bp TGTTTCTTACCTGCATTTATGTGGTGCTGGGGATGGAACCCAGGACTTCATTTATTTTCAATGAAAGCGTaGATTCTCTGCAGCATGCCT +
Preference number: 5 (lower is better)
Translates to: CFLPAFMWCWGWNPGLHLFSMKA*ILCSMP
Trigger: AGGCATGCTGCAGAGAATCAACGCTTTCATTGAAAA...TAAATGAAGTCCTGGGTTCCATCCCCAGCACCACATAAATGCAGGTAAGAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 90 bp CACAATATCGATATAAATCAGCTCAACGATTCTGTCTCCTACAGTTaGACAGCCAGACCGGTTTCCAACAACCTTCTTCATTATCTCCTT +
Preference number: 5 (lower is better)
Translates to: HNIDINQLNDSVSYS*TARPVSNNLLHYLL
Trigger: AAGGAGATAATGAAGAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTGATTTATATCGATATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 90 bp TACTGGAGCCATAAACAGTGGCGTGCACTTCCATGTACGTGTGAATaGTATCCAGGTAGATTTTCTTATTCTTCCAGAAACTATCCACTT +
Preference number: 5 (lower is better)
Translates to: YWSHKQWRALPCTCE*YPGRFSYSSRNYPL
Trigger: AAGTGGATAGTTTCTGGAAGAATAAGAAAATCTACCTGGATATCATTCACACGTACATGGAAGTGCACGCCACTGTTTATGGCTCCAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 72 bp TGTTTGCAGGACTGCCCTGGCTCAGCCAGCTTCACCTaGAGGGCGCTGAGGGGCGGCCACATCACTTGGCCA +
Preference number: 6 (lower is better)
Translates to: CLQDCPGSASFT*RALRGGHITWP
Trigger: TGGCCAAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp AAGAAGGAAGGCTCGCAGATGAGCTGGCTCTCCTGGCACACCTGTTaGCAGGACTGCCCTGGCTCAGCCAGCTTCACCTGCAGGGCGCTG +
Preference number: 6 (lower is better)
Translates to: KKEGSQMSWLSWHTC*QDCPGSASFTCRAL
Trigger: CAGCGCCCTGCAGGTGAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCAGGAGAGCCAGCTCATCTGCGAGCCTTCCTTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp AGATCCGCTGGTGTGTGGGGTGGGCTCCGGCACAACTaGAGAGCAGGAGGTCCCCTTGGAACACACAGTGCT +
Preference number: 6 (lower is better)
Translates to: RSAGVWGGLRHN*RAGGPLGTHSA
Trigger: AGCACTGTGTGTTCCAAGGGGACCTCCTGCTCTTCAGTTGTGCCGGAGCCCACCCCACACACCAGCGGATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp CTGGGGACAGCCGTGGTGGAGTTGGTGGAGTTCGCTCCTGTGCCGTaGACCAGATTGTCCACCTTTGACTCGAGCTTGCCAATGCGCTGC +
Preference number: 6 (lower is better)
Translates to: LGTAVVELVEFAPVP*TRLSTFDSSLPMRC
Trigger: GCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGGCTGTCCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp AGGATCTGCTCCCGTAACATGGAGCTGCTCTCGGGCTaGGTCCGCTGCTGGATGGTGAAGTGCAGAAGCATC +
Preference number: 6 (lower is better)
Translates to: RICSRNMELLSG*VRCWMVKCRSI
Trigger: GATGCTTCTGCACTTCACCATCCAGCAGCGGACTCAGCCCGAGAGCAGCTCCATGTTACGGGAGCAGATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp GCCGTGGTGGAGTTGGTGGAGTTCGCTCCTGTGCCGTaGACCAGATTGTCCACCTTTGACTCGAGCTTGCCA +
Preference number: 6 (lower is better)
Translates to: AVVELVEFAPVP*TRLSTFDSSLP
Trigger: TGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp GTGGGCTCCGGCACAACTGAAGAGCAGGAGGTCCCCTaGGAACACACAGTGCTTGCTCTTGGGGTAGAAGGA +
Preference number: 6 (lower is better)
Translates to: VGSGTTEEQEVP*EHTVLALGVEG
Trigger: TCCTTCTACCCCAAGAGCAAGCACTGTGTGTTCCAAGGGGACCTCCTGCTCTTCAGTTGTGCCGGAGCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp GCCGTGGTGGAGTTGGTGGAGTTCGCTCCTGTGCCGTTGACCAGATaGTCCACCTTTGACTCGAGCTTGCCAATGCGCTGCAGGATGTTA +
Preference number: 6 (lower is better)
Translates to: AVVELVEFAPVPLTR*STFDSSLPMRCRML
Trigger: TAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp AGACGGCGAGCGTTTTCTTCAGATCATAGGCTGTCATaGCACCAGCGTAGGGGCCATCCACCACGTCCCTGT +
Preference number: 6 (lower is better)
Translates to: RRRAFSSDHRLS*HQRRGHPPRPC
Trigger: ACAGGGACGTGGTGGATGGCCCCTACGCTGGTGTCATGACAGCCTATGATCTGAAGAAAACGCTCGCCGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp CCGTGGTGGAGTTGGTGGAGTTCGCTCCTGTGCCGTTaGCCAGATTGTCCACCTTTGACTCGAGCTTGCCAA +
Preference number: 6 (lower is better)
Translates to: PWWSWWSSLLCR*PDCPPLTRACQ
Trigger: TTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 72 bp CCACTGAACGAGTTCACCCAGAGGGCCACCGCTGAATaGTGTCTCCGCAATCTTGAAGCCCGATTCCTTGGT +
Preference number: 6 (lower is better)
Translates to: PLNEFTQRATAE*CLRNLEARFLG
Trigger: ACCAAGGAATCGGGCTTCAAGATTGCGGAGACAGCATTCAGCGGTGGCCCTCTGGGTGAACTCGTTCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp TTCACCTGCAGGGCGCTGAGGGGCGGCCACATCACTTaGCCATGGCAGAAGTCCTGTTTTTCAATGAAAGCG +
Preference number: 6 (lower is better)
Translates to: FTCRALRGGHIT*PWQKSCFSMKA
Trigger: CGCTTTCATTGAAAAACAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp GAGTTGGTGGAGTTCGCTCCTGTGCCGTTGACCAGATaGTCCACCTTTGACTCGAGCTTGCCAATGCGCTGC +
Preference number: 6 (lower is better)
Translates to: ELVEFAPVPLTR*STFDSSLPMRC
Trigger: GCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp CTTCACCTGCAGGGCGCTGAGGGGCGGCCACATCACTaGGCCATGGCAGAAGTCCTGTTTTTCAATGAAAGC +
Preference number: 6 (lower is better)
Translates to: LHLQGAEGRPHH*AMAEVLFFNES
Trigger: GCTTTCATTGAAAAACAGGACTTCTGCCATGGCCAAGTGATGTGGCCGCCCCTCAGCGCCCTGCAGGTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TCCACCACGTCCCTGTTCTCCTCTGCCAGTGCCTTAATGTACCTCTaGCTGAGGTCAAGGATCTGCTCCCGTAACATGGAGCTGCTCTCG +
Preference number: 6 (lower is better)
Translates to: STTSLFSSASALMYL*LRSRICSRNMELLS
Trigger: CGAGAGCAGCTCCATGTTACGGGAGCAGATCCTTGACCTCAGCAAGAGGTACATTAAGGCACTGGCAGAGGAGAACAGGGACGTGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TTCGCTCCTGTGCCGTTGACCAGATTGTCCACCTTTGACTCGAGCTaGCCAATGCGCTGCAGGATGTTATCCAGCAAGACGGCGAGCGTT +
Preference number: 6 (lower is better)
Translates to: FAPVPLTRLSTFDSS*PMRCRMLSSKTASV
Trigger: AACGCTCGCCGTCTTGCTGGATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp GGCCTTCATAAGGGAATCCGAGCCCAACGAACAGCTTaGTTTCCCGGAGAAGAAACTGCAGGTCACGTCCAC +
Preference number: 6 (lower is better)
Translates to: GLHKGIRAQRTA*FPGEETAGHVH
Trigger: GTGGACGTGACCTGCAGTTTCTTCTCCGGGAAACCAAGCTGTTCGTTGGGCTCGGATTCCCTTATGAAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp GTTCGCTCCTGTGCCGTTGACCAGATTGTCCACCTTTaGCTCGAGCTTGCCAATGCGCTGCAGGATGTTATC +
Preference number: 6 (lower is better)
Translates to: VRSCAVDQIVHL*LELANALQDVI
Trigger: GATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp CCCAGCAGGTACAGAGATGTGATTAAGTCACTCCACTaGACGAGTTCACCCAGAGGGCCACCGCTGAATGCT +
Preference number: 6 (lower is better)
Translates to: PSRYRDVIKSLH*TSSPRGPPLNA
Trigger: AGCATTCAGCGGTGGCCCTCTGGGTGAACTCGTTCAGTGGAGTGACTTAATCACATCTCTGTACCTGCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp TCAAGGTTTTGTTTCTCCGCCAGAGACTTGATAGCTTaGATCCACGCGTCAGCCATTCGCCGGATCCGAAGC +
Preference number: 6 (lower is better)
Translates to: SRFCFSARDLIA*IHASAIRRIRS
Trigger: GCTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp TTGAGCTCAGCCAGTGAGGCCGAGATCCGGATGTCATaGCCCAGCAGGTACAGAGATGTGATTAAGTCACTC +
Preference number: 6 (lower is better)
Translates to: LSSASEAEIRMS*PSRYRDVIKSL
Trigger: GAGTGACTTAATCACATCTCTGTACCTGCTGGGCCATGACATCCGGATCTCGGCCTCACTGGCTGAGCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp TTCCTCTCGGTTATTGAGATCCACAGTCCAGACGTGTaGCCGGCCGATGAAGACTTCTGCGTAAGGATGCTG +
Preference number: 6 (lower is better)
Translates to: FLSVIEIHSPDV*PADEDFCVRML
Trigger: CAGCATCCTTACGCAGAAGTCTTCATCGGCCGGCCACACGTCTGGACTGTGGATCTCAATAACCGAGAGGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp GTGCCGTTGACCAGATTGTCCACCTTTGACTCGAGCTaGCCAATGCGCTGCAGGATGTTATCCAGCAAGACG +
Preference number: 6 (lower is better)
Translates to: VPLTRLSTFDSS*PMRCRMLSSKT
Trigger: CGTCTTGCTGGATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp CTCAAGGTTTTGTTTCTCCGCCAGAGACTTGATAGCTaGGATCCACGCGTCAGCCATTCGCCGGATCCGAAG +
Preference number: 6 (lower is better)
Translates to: LKVLFLRQRLDS*DPRVSHSPDPK
Trigger: CTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TTAATTTTCTCAAGCGACACCAAGCTGGGGACAGCCGTGGTGGAGTaGGTGGAGTTCGCTCCTGTGCCGTTGACCAGATTGTCCACCTTT +
Preference number: 6 (lower is better)
Translates to: LIFSSDTKLGTAVVE*VEFAPVPLTRLSTF
Trigger: AAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAACTCCACCACGGCTGTCCCCAGCTTGGTGTCGCTTGAGAAAATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp AACAACCTTCTTCATTATCTCCTTGAGCTCAGCCAGTaGGGCCGAGATCCGGATGTCATGGCCCAGCAGGTA +
Preference number: 6 (lower is better)
Translates to: NNLLHYLLELSQ*GRDPDVMAQQV
Trigger: TACCTGCTGGGCCATGACATCCGGATCTCGGCCTCACTGGCTGAGCTCAAGGAGATAATGAAGAAGGTTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 72 bp AGATTGTCCACCTTTGACTCGAGCTTGCCAATGCGCTaGAGGATGTTATCCAGCAAGACGGCGAGCGTTTTC +
Preference number: 6 (lower is better)
Translates to: RLSTFDSSLPMR*RMLSSKTASVF
Trigger: GAAAACGCTCGCCGTCTTGCTGGATAACATCCTGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 72 bp CAGGTTCTGTTCCAAAGGAGTCTAGCACCCGGAGCATaGACTGGTAATGAACCCAGGATGGCCCTAGTGTTT +
Preference number: 6 (lower is better)
Translates to: QVLFQRSLAPGA*TGNEPRMALVF
Trigger: AAACACTAGGGCCATCCTGGGTTCATTACCAGTGCATGCTCCGGGTGCTAGACTCCTTTGGAACAGAACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp TCCCTGTTCTCCTCTGCCAGTGCCTTAATGTACCTCTaGCTGAGGTCAAGGATCTGCTCCCGTAACATGGAG +
Preference number: 6 (lower is better)
Translates to: SLFSSASALMYL*LRSRICSRNME
Trigger: CTCCATGTTACGGGAGCAGATCCTTGACCTCAGCAAGAGGTACATTAAGGCACTGGCAGAGGAGAACAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp TTCCTCTTCTCAAGGTTTTGTTTCTCCGCCAGAGACTaGATAGCTTGGATCCACGCGTCAGCCATTCGCCGG +
Preference number: 6 (lower is better)
Translates to: FLFSRFCFSARD*IAWIHASAIRR
Trigger: CCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAGAAGAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TTTCCTCTTCTCAAGGTTTTGTTTCTCCGCCAGAGACTTGATAGCTaGGATCCACGCGTCAGCCATTCGCCGGATCCGAAGCCTCATCCA +
Preference number: 6 (lower is better)
Translates to: FPLLKVLFLRQRLDS*DPRVSHSPDPKPHP
Trigger: TGGATGAGGCTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAGAAGAGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TTCTTCCGTTTCCTCTTCTCAAGGTTTTGTTTCTCCGCCAGAGACTaGATAGCTTGGATCCACGCGTCAGCCATTCGCCGGATCCGAAGC +
Preference number: 6 (lower is better)
Translates to: FFRFLFSRFCFSARD*IAWIHASAIRRIRS
Trigger: GCTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAGAAGAGGAAACGGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS GCA 72 bp AGCCCAACGAACAGCTTGGTTTCCCGGAGAAGAAACTaGAGGTCACGTCCACTGAGAATGCCATGGTTTTTC +
Preference number: 6 (lower is better)
Translates to: SPTNSLVSRRRN*RSRPLRMPWFF
Trigger: GAAAAACCATGGCATTCTCAGTGGACGTGACCTGCAGTTTCTTCTCCGGGAAACCAAGCTGTTCGTTGGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp GAGGGCACCAGGATGTCCTTGTACAGTTCTGAGCTTTaGCAGGTCACCTTATACTTCAGCAGGTCCTTTTCC +
Preference number: 6 (lower is better)
Translates to: EGTRMSLYSSEL*QVTLYFSRSFS
Trigger: GGAAAAGGACCTGCTGAAGTATAAGGTGACCTGCCAAAGCTCAGAACTGTACAAGGACATCCTGGTGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp ATGGCTTTTACTGCATCTTCTACTTCCTCTCGGTTATaGAGATCCACAGTCCAGACGTGTGGCCGGCCGATG +
Preference number: 6 (lower is better)
Translates to: MAFTASSTSSRL*RSTVQTCGRPM
Trigger: CATCGGCCGGCCACACGTCTGGACTGTGGATCTCAATAACCGAGAGGAAGTAGAAGATGCAGTAAAAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp CCCCAGGTGAACAAGGATTTTCTTCCGTTTCCTCTTCTCAAGGTTTaGTTTCTCCGCCAGAGACTTGATAGCTTGGATCCACGCGTCAGC +
Preference number: 6 (lower is better)
Translates to: PQVNKDFLPFPLLKV*FLRQRLDSLDPRVS
Trigger: GCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGAGAAACAAAACCTTGAGAAGAGGAAACGGAAGAAAATCCTTGTTCACCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp TCTTGTGGCCTTTTGACTGGGCATAGCTCGCATGATTaGACTCAGGTTCTGTTCCAAAGGAGTCTAGCACCC +
Preference number: 6 (lower is better)
Translates to: SCGLLTGHSSHD*TQVLFQRSLAP
Trigger: GGGTGCTAGACTCCTTTGGAACAGAACCTGAGTTCAATCATGCGAGCTATGCCCAGTCAAAAGGCCACAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp TGGTTTAAGATGGCTTTTACTGCATCTTCTACTTCCTCTCGGTTATaGAGATCCACAGTCCAGACGTGTGGCCGGCCGATGAAGACTTCT +
Preference number: 6 (lower is better)
Translates to: WFKMAFTASSTSSRL*RSTVQTCGRPMKTS
Trigger: AGAAGTCTTCATCGGCCGGCCACACGTCTGGACTGTGGATCTCAATAACCGAGAGGAAGTAGAAGATGCAGTAAAAGCCATCTTAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp CATGGTTTTTCACGTAACTGGGAATGTTCTTGGTACTaGAGCCATAAACAGTGGCGTGCACTTCCATGTACG +
Preference number: 6 (lower is better)
Translates to: HGFSRNWECSWY*SHKQWRALPCT
Trigger: CGTACATGGAAGTGCACGCCACTGTTTATGGCTCCAGTACCAAGAACATTCCCAGTTACGTGAAAAACCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp GAATGCCATGGTTTTTCACGTAACTGGGAATGTTCTTaGTACTGGAGCCATAAACAGTGGCGTGCACTTCCA +
Preference number: 6 (lower is better)
Translates to: ECHGFSRNWECS*YWSHKQWRALP
Trigger: TGGAAGTGCACGCCACTGTTTATGGCTCCAGTACCAAGAACATTCCCAGTTACGTGAAAAACCATGGCATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 72 bp CGATATAAATCAGCTCAACGATTCTGTCTCCTACAGTaGGACAGCCAGACCGGTTTCCAACAACCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: RYKSAQRFCLLQ*DSQTGFQQPSS
Trigger: TGAAGAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTGATTTATATCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp GATATAAATCAGCTCAACGATTCTGTCTCCTACAGTTaGACAGCCAGACCGGTTTCCAACAACCTTCTTCAT +
Preference number: 6 (lower is better)
Translates to: DINQLNDSVSYS*TARPVSNNLLH
Trigger: ATGAAGAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTGATTTATATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CAA 90 bp CCACAATATCGATATAAATCAGCTCAACGATTCTGTCTCCTACAGTaGGACAGCCAGACCGGTTTCCAACAACCTTCTTCATTATCTCCT +
Preference number: 6 (lower is better)
Translates to: PQYRYKSAQRFCLLQ*DSQTGFQQPSSLSP
Trigger: AGGAGATAATGAAGAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTGATTTATATCGATATTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS TCA 72 bp CATAAACAGTGGCGTGCACTTCCATGTACGTGTGAATaGTATCCAGGTAGATTTTCTTATTCTTCCAGAAAC +
Preference number: 6 (lower is better)
Translates to: HKQWRALPCTCE*YPGRFSYSSRN
Trigger: GTTTCTGGAAGAATAAGAAAATCTACCTGGATATCATTCACACGTACATGGAAGTGCACGCCACTGTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2
CDS CCA 72 bp CATGTGAACTCATATGGCATATACGGCTCAATCTTCTaGTTTAAGATGGCTTTTACTGCATCTTCTACTTCC +
Preference number: 6 (lower is better)
Translates to: HVNSYGIYGSIF*FKMAFTASSTS
Trigger: GGAAGTAGAAGATGCAGTAAAAGCCATCTTAAACCAGAAGATTGAGCCGTATATGCCATATGAGTTCACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038361.11
ENSMUST00000171405.2