RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MGAT4E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046367

Ensembl transcript IDs: ENSMUST00000052911.8, ENSMUST00000172898.2, ENSMUST00000185836.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGGGATCAGAGTCAGCCAGGTGGACCAGCACTGTCATTTGTTTCTaGTCGGATGTGGAGGAGGTGTGGTACAGGGAGGCCAGTGTATCC +
Preference number: 1 (lower is better)
Translates to: VGSESARWTSTVICF*SDVEEVWYREASVS
Trigger: GGATACACTGGCCTCCCTGTACCACACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCACCTGGCTGACTCTGATCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp AGTCAGCCAGGTGGACCAGCACTGTCATTTGTTTCTGCTCGGATGTaGAGGAGGTGTGGTACAGGGAGGCCAGTGTATCCAAGAGGCCAT +
Preference number: 1 (lower is better)
Translates to: SQPGGPALSFVSARM*RRCGTGRPVYPRGH
Trigger: ATGGCCTCTTGGATACACTGGCCTCCCTGTACCACACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCACCTGGCTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp CGGATGATAGTTCTCCTGAGCCAGGTGGGATCAGAGTCAGCCAGGTaGACCAGCACTGTCATTTGTTTCTGCTCGGATGTGGAGGAGGTG +
Preference number: 1 (lower is better)
Translates to: RMIVLLSQVGSESAR*TSTVICFCSDVEEV
Trigger: CACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCACCTGGCTGACTCTGATCCCACCTGGCTCAGGAGAACTATCATCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 90 bp GAGGTGAGTCAACCTGTGGTAAAAGAGAAATGGTCGGCAGAGGATTaGACTTTGCTGGCCCAGGAGGGTGCGGAAGTGAAGGAGCAGCCA +
Preference number: 1 (lower is better)
Translates to: EVSQPVVKEKWSAED*TLLAQEGAEVKEQP
Trigger: TGGCTGCTCCTTCACTTCCGCACCCTCCTGGGCCAGCAAAGTTCAATCCTCTGCCGACCATTTCTCTTTTACCACAGGTTGACTCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp TGGACCAGCACTGTCATTTGTTTCTGCTCGGATGTGGAGGAGGTGTaGTACAGGGAGGCCAGTGTATCCAAGAGGCCATTTGGACCCTCT +
Preference number: 1 (lower is better)
Translates to: WTSTVICFCSDVEEV*YREASVSKRPFGPS
Trigger: AGAGGGTCCAAATGGCCTCTTGGATACACTGGCCTCCCTGTACCACACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 90 bp CCAGTGTATCCAAGAGGCCATTTGGACCCTCTCGTGACTCTGAGGTaGTCCCCACTGTCAGCCATGTCTTTCTTCTCTGCTGGATTTCTT +
Preference number: 1 (lower is better)
Translates to: PVYPRGHLDPLVTLR*SPLSAMSFFSAGFL
Trigger: AAGAAATCCAGCAGAGAAGAAAGACATGGCTGACAGTGGGGATCACCTCAGAGTCACGAGAGGGTCCAAATGGCCTCTTGGATACACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp GTTTCGTGGCAAAGCTCATTAGGAAGGCATGGTCTACATTCTGCTTaGAGTAGATCTGCCCCCGAGAGACCTTGTTCTGGGCATCGTTCA +
Preference number: 1 (lower is better)
Translates to: VSWQSSLGRHGLHSA*SRSAPERPCSGHRS
Trigger: TGAACGATGCCCAGAACAAGGTCTCTCGGGGGCAGATCTACTCCAAGCAGAATGTAGACCATGCCTTCCTAATGAGCTTTGCCACGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR GCA 90 bp GTAGATATGCCTGATCATGAGACCACCGACCTGATTAGCGTTCACTaGCAGCTTCACGCAGCTTACTTTATACCCAATGCTTTCCAGAAT +
Preference number: 1 (lower is better)
Translates to: VDMPDHETTDLISVH*QLHAAYFIPNAFQN
Trigger: ATTCTGGAAAGCATTGGGTATAAAGTAAGCTGCGTGAAGCTGGCAGTGAACGCTAATCAGGTCGGTGGTCTCATGATCAGGCATATCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp AATTGGGGGCACAAAAGACATTGTCCTCTATCAAGAGGAAGTAAGTaGAGAGTTTCGTGGCAAAGCTCATTAGGAAGGCATGGTCTACAT +
Preference number: 1 (lower is better)
Translates to: NWGHKRHCPLSRGSK*RVSWQSSLGRHGLH
Trigger: ATGTAGACCATGCCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGATAGAGGACAATGTCTTTTGTGCCCCCAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp ATCCGTGATGGAGCCCGTTCTTACTTGCACTCTGTTGAGGTTCGCTaGATTGTTCAAAATCACTGTCAAATAGTTCCCTGTAGTGACATT +
Preference number: 1 (lower is better)
Translates to: IRDGARSYLHSVEVR*IVQNHCQIVPCSDI
Trigger: AATGTCACTACAGGGAACTATTTGACAGTGATTTTGAACAATCCAGCGAACCTCAACAGAGTGCAAGTAAGAACGGGCTCCATCACGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 90 bp AAAAGACATTGTCCTCTATCAAGAGGAAGTAAGTGGAGAGTTTCGTaGCAAAGCTCATTAGGAAGGCATGGTCTACATTCTGCTTGGAGT +
Preference number: 1 (lower is better)
Translates to: KRHCPLSRGSKWRVS*QSSLGRHGLHSAWS
Trigger: ACTCCAAGCAGAATGTAGACCATGCCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGATAGAGGACAATGTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CAA 90 bp AGGAGGAAGTGGGCCAGGAGTGGAAGGTCCCTGCTGTGGAGAAGTTaGCCCAGGAAGCCCATATTAGAGAACTCGAGGAGCACCCATGTG +
Preference number: 2 (lower is better)
Translates to: RRKWARSGRSLLWRS*PRKPILENSRSTHV
Trigger: CACATGGGTGCTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTCCACAGCAGGGACCTTCCACTCCTGGCCCACTTCCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CCA 90 bp CCAGAGTATAGGCCTCCTGCGGGGAGTGGGTATCAGAGAACCTCATATCCGTGTCGAGAGACCTTGTTCTaGGCATCGTTCACAGCGGGG +
Preference number: 2 (lower is better)
Translates to: PEYRPPAGSGYQRTSYPCRETLF*ASFTAG
Trigger: CCCCGCTGTGAACGATGCCCAGAACAAGGTCTCTCG...ACACGGATATGAGGTTCTCTGATACCCACTCCCCGCAGGAGGCCTATACTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CCA 90 bp CGGGGTAGGCATCAGGTGGGGCGTGGATCAGTAACAATTGCCCTGTCAAGATCTGATGTGGAGGAGGTGTaGTACAGGGAGGCCAGTGTA +
Preference number: 2 (lower is better)
Translates to: RGRHQVGRGSVTIALSRSDVEEV*YREASV
Trigger: TACACTGGCCTCCCTGTACCACACCTCCTCCACATC...AGATCTTGACAGGGCAATTGTTACTGATCCACGCCCCACCTGATGCCTACCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR GCA 90 bp TCCATCTGCCCTTGCACAAGCCGGCCCAGCAGGGTAAAGCTGGTGCATTGTGGCTGGATCAGTAACAATTaGCCTGTCAAGATCTGGGAC +
Preference number: 2 (lower is better)
Translates to: SICPCTSRPSRVKLVHCGWISNN*PVKIWD
Trigger: GTCCCAGATCTTGACAGGGCAATTGTTACTGATCCA...GCCACAATGCACCAGCTTTACCCTGCTGGGCCGGCTTGTGCAAGGGCAGATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR GCA 90 bp GTCCCTGCTGTGGAGAAGTTTGCCCAGGAAGCCCATATTAGAGAACTCGAGGAGACTGTCATTTGTTTCTaGTCGGATGTGGAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: VPAVEKFAQEAHIRELEETVICF*SDVEEV
Trigger: CACCTCCTCCACATCCGAGCAGAAACAAATGACAGT...CTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTCCACAGCAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CCA 90 bp CCAGAGTATAGGCCTCCTGCGGGGAGTGGGTATCAGAGAACCTCATATCCGTGTAAGTGGAGAGTTTCGTaGCAAAGCTCATTAGGAAGG +
Preference number: 2 (lower is better)
Translates to: PEYRPPAGSGYQRTSYPCKWRVS*QSSLGR
Trigger: CCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTT...ACACGGATATGAGGTTCTCTGATACCCACTCCCCGCAGGAGGCCTATACTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CCA 90 bp TGTAGGACCAGAAGAACGACTCATCCAGAGTATAGGCCTCCTGCGGGGAGTGGGGGAGGATCCTTTTCATaGCCTATTAAGGTCTTGTTC +
Preference number: 2 (lower is better)
Translates to: CRTRRTTHPEYRPPAGSGGGSFS*PIKVLF
Trigger: GAACAAGACCTTAATAGGCCATGAAAAGGATCCTCC...CCCACTCCCCGCAGGAGGCCTATACTCTGGATGAGTCGTTCTTCTGGTCCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR GCA 90 bp GAGAAGTTTGCCCAGGAAGCCCATATTAGAGAACTCGAGGAGCACCCATGTGTTCATGTCTTTCTTCTCTaGTGGATTTCTTTCAGATAC +
Preference number: 2 (lower is better)
Translates to: EKFAQEAHIRELEEHPCVHVFLL*WISFRY
Trigger: GTATCTGAAAGAAATCCAGCAGAGAAGAAAGACATG...AACACATGGGTGCTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR GCA 90 bp TATACGGATCAGGAGGATCCTTTTCATGGCCTATTAAGGTCTTGTTCTCAAAAGTTGAAGGTGATGTTCTaGCAGTCATCAAGTGATCTG +
Preference number: 2 (lower is better)
Translates to: YTDQEDPFHGLLRSCSQKLKVMF*QSSSDL
Trigger: CAGATCACTTGATGACTGGCAGAACATCACCTTCAA...CTTTTGAGAACAAGACCTTAATAGGCCATGAAAAGGATCCTCCTGATCCGTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CCA 90 bp ATTGTTCAAAATCACTGTCAAATAGTTCCCTGTAGTGACATTGTAGGACCAGAATCAAGAGGAAGTAAGTaGAGAGTTTCGTGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: IVQNHCQIVPCSDIVGPESRGSK*RVSWQS
Trigger: GCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGA...TTCTGGTCCTACAATGTCACTACAGGGAACTATTTGACAGTGATTTTGAACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 72 bp GGCCCAGGAGGGTGCGGAAGTGAAGGAGCAGCCAGTTaGGAGGTCGCTCCTTGTGGAAGAGGAGGAGGAAGT +
Preference number: 3 (lower is better)
Translates to: GPGGCGSEGAAS*EVAPCGRGGGS
Trigger: ACTTCCTCCTCCTCTTCCACAAGGAGCGACCTCTCAACTGGCTGCTCCTTCACTTCCGCACCCTCCTGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 72 bp AGGAGGAAGTGGGCCAGGAGTGGAAGGTCCCTGCTGTaGAGAAGTTTGCCCAGGAAGCCCATATTAGAGAAC +
Preference number: 3 (lower is better)
Translates to: RRKWARSGRSLL*RSLPRKPILEN
Trigger: GTTCTCTAATATGGGCTTCCTGGGCAAACTTCTCCACAGCAGGGACCTTCCACTCCTGGCCCACTTCCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 72 bp CCAAGAGGCCATTTGGACCCTCTCGTGACTCTGAGGTaGTCCCCACTGTCAGCCATGTCTTTCTTCTCTGCT +
Preference number: 3 (lower is better)
Translates to: PRGHLDPLVTLR*SPLSAMSFFSA
Trigger: AGCAGAGAAGAAAGACATGGCTGACAGTGGGGATCACCTCAGAGTCACGAGAGGGTCCAAATGGCCTCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CAA 90 bp TGTAGGACCAGAAGAACGACTCATCCAGAGTATAGGCCTCCTGCGGGGAGTGGGTTCGAGCGAATGTGGTaGACAAAATTGGGGGCACAA +
Preference number: 3 (lower is better)
Translates to: CRTRRTTHPEYRPPAGSGFERMW*TKLGAQ
Trigger: TTGTGCCCCCAATTTTGTCAACCACATTCGCTCGAA...CCCACTCCCCGCAGGAGGCCTATACTCTGGATGAGTCGTTCTTCTGGTCCTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 72 bp CAATTGCCCTGTCAAGATCTGGGACCTGTAGAGACTTaGAATCCGGATGATAGTTCTCCTGAGCCAGGTGGG +
Preference number: 3 (lower is better)
Translates to: QLPCQDLGPVET*NPDDSSPEPGG
Trigger: CCCACCTGGCTCAGGAGAACTATCATCCGGATTTCAAGTCTCTACAGGTCCCAGATCTTGACAGGGCAATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR TCA 72 bp CAGCTTACTTTATACCCAATGCTTTCCAGAATGAACTaGTCCATCTGCCCTTGCACAAGCCGGCCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: QLTLYPMLSRMN*SICPCTSRPSR
Trigger: CCTGCTGGGCCGGCTTGTGCAAGGGCAGATGGATCAGTTCATTCTGGAAAGCATTGGGTATAAAGTAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 72 bp CAAAGCTCATTAGGAAGGCATGGTCTACATTCTGCTTaGAGTAGATCTGCCCCCGAGAGACCTTGTTCTGGG +
Preference number: 3 (lower is better)
Translates to: QSSLGRHGLHSA*SRSAPERPCSG
Trigger: CCCAGAACAAGGTCTCTCGGGGGCAGATCTACTCCAAGCAGAATGTAGACCATGCCTTCCTAATGAGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CAA 90 bp GTCGTCGTCATCGTCATCGTTGTCAATTTGGACATCTTTTCTGTTTTTGGCATTTTGAGAGGTCGCTCCTaGTGGAAGAGGAGGAGGAAG +
Preference number: 3 (lower is better)
Translates to: VVVIVIVVNLDIFSVFGILRGRS*WKRRRK
Trigger: CTTCCTCCTCCTCTTCCACAAGGAGCGACCTCTCAA...AATGCCAAAAACAGAAAAGATGTCCAAATTGACAACGATGACGATGACGACGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CAA 90 bp GAGAAGTTTGCCCAGGAAGCCCATATTAGAGAACTCGAGGAGCACCCATGTGTTATTTCTTTCAGATACTaGAAGGTGATGTTCTGCCAG +
Preference number: 3 (lower is better)
Translates to: EKFAQEAHIRELEEHPCVISFRY*KVMFCQ
Trigger: CTGGCAGAACATCACCTTCAAGTATCTGAAAGAAAT...AACACATGGGTGCTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR-3UTR CAA 90 bp AAAAGACATTGTCCTCTATCAAGAGGAAGTAAGTGGAGAGTTTCGTGGCAAAGCGACCAGCACTGTCATTaGTTTCTGCTCGGATGTGGA +
Preference number: 3 (lower is better)
Translates to: KRHCPLSRGSKWRVSWQSDQHCH*FLLGCG
Trigger: TCCACATCCGAGCAGAAACAAATGACAGTGCTGGTC...GCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGATAGAGGACAATGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR GCA 72 bp ATGTACTTTCCATCCGTGATGGAGCCCGTTCTTACTTaGACTCTGTTGAGGTTCGCTGGATTGTTCAAAATC +
Preference number: 3 (lower is better)
Translates to: MYFPSVMEPVLT*TLLRFAGLFKI
Trigger: GATTTTGAACAATCCAGCGAACCTCAACAGAGTGCAAGTAAGAACGGGCTCCATCACGGATGGAAAGTACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 72 bp TGTCCTCTATCAAGAGGAAGTAAGTGGAGAGTTTCGTaGCAAAGCTCATTAGGAAGGCATGGTCTACATTCT +
Preference number: 3 (lower is better)
Translates to: CPLSRGSKWRVS*QSSLGRHGLHS
Trigger: AGAATGTAGACCATGCCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGATAGAGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CCA 72 bp CACAAAAGACATTGTCCTCTATCAAGAGGAAGTAAGTaGAGAGTTTCGTGGCAAAGCTCATTAGGAAGGCAT +
Preference number: 3 (lower is better)
Translates to: HKRHCPLSRGSK*RVSWQSSLGRH
Trigger: ATGCCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTTACTTCCTCTTGATAGAGGACAATGTCTTTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CAA 72 bp TGGGCCAGGAGTGGAAGGTCCCTGCTGTGGAGAAGTTaGCCCAGGAAGCCCATATTAGAGAACTCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: WARSGRSLLWRS*PRKPILENSRS
Trigger: GCTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTCCACAGCAGGGACCTTCCACTCCTGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CAA 72 bp GGGATCAGAGTCAGCCAGGTGGACCAGCACTGTCATTaGTTTCTGCTCGGATGTGGAGGAGGTGTGGTACAG +
Preference number: 4 (lower is better)
Translates to: GIRVSQVDQHCH*FLLGCGGGVVQ
Trigger: CTGTACCACACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCACCTGGCTGACTCTGATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
3UTR CAA 72 bp GATGTACTTTCCATCCGTGATGGAGCCCGTTCTTACTaGCACTCTGTTGAGGTTCGCTGGATTGTTCAAAAT +
Preference number: 4 (lower is better)
Translates to: DVLSIRDGARSY*HSVEVRWIVQN
Trigger: ATTTTGAACAATCCAGCGAACCTCAACAGAGTGCAAGTAAGAACGGGCTCCATCACGGATGGAAAGTACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185836.2
CDS TCA 72 bp CCAAGAGGCCATTTGGACCCTCTCGTGACTCTGAGGTaGTCCCCACTGTCAGCCATGCTTGAGAAGCGTGAC +
Preference number: 6 (lower is better)
Translates to: PRGHLDPLVTLR*SPLSAMLEKRD
Trigger: GTCACGCTTCTCAAGCATGGCTGACAGTGGGGATCACCTCAGAGTCACGAGAGGGTCCAAATGGCCTCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052911.8
ENSMUST00000172898.2