Pregenerated sensors for MGAT4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035057Ensembl transcript IDs: ENSMUST00000038692.6
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGAGACGATCACCACAGAGTCCTCCTCTTCTTCGGGAGTCATTCTaGAGAGAACAGAGGTCAGCGTTTGCTTCAGGTAGGTGTGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: QRRSPQSPPLLRESF*REQRSAFASGRCGS Trigger: GGAACCACACCTACCTGAAGCAAACGCTGACCTCTGTTCTCTCCAGAATGACTCCCGAAGAAGAGGAGGACTCTGTGGTGATCGTCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS TCA 90 bp | AGGAAGTACTTTAAGACTTCAAATTGGTTAGGAAGTGTTTCATGCTaGCTCAATATGCTCCCCTTCTTCTCAAGGAAGTTCCCTGATGAT | + |
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Preference number: 5 (lower is better) Translates to: RKYFKTSNWLGSVSC*LNMLPFFSRKFPDD Trigger: ATCATCAGGGAACTTCCTTGAGAAGAAGGGGAGCATATTGAGTCAGCATGAAACACTTCCTAACCAATTTGAAGTCTTAAAGTACTTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS GCA 90 bp | TGGGCATACAGCATCAGAATACAGAAGTCCAATACTTGTTTTATTTaGCAACTTTCTGAGTCCGTCTTCGTTTTCTTGTCCAGTAATGTT | + |
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Preference number: 5 (lower is better) Translates to: WAYSIRIQKSNTCFI*QLSESVFVFLSSNV Trigger: AACATTACTGGACAAGAAAACGAAGACGGACTCAGAAAGTTGGCAAATAAAACAAGTATTGGACTTCTGTATTCTGATGCTGTATGCCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS GCA 72 bp | GGTGTGGTTCCCTCTGTTAATGGTGGAGATTCCCAGTaGAAAGGAAACGCCTGCTCTCCCTTTGCTAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GVVPSVNGGDSQ*KGNACSPFASG Trigger: GCCACTAGCAAAGGGAGAGCAGGCGTTTCCTTTGCACTGGGAATCTCCACCATTAACAGAGGGAACCACACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CAA 72 bp | TTCGGGAGTCATTCTGGAGAGAACAGAGGTCAGCGTTaGCTTCAGGTAGGTGTGGTTCCCTCTGTTAATGGT | + |
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Preference number: 6 (lower is better) Translates to: FGSHSGENRGQR*LQVGVVPSVNG Trigger: ACCATTAACAGAGGGAACCACACCTACCTGAAGCAAACGCTGACCTCTGTTCTCTCCAGAATGACTCCCGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS GCA 72 bp | AGGGTGGGTATTGAAATGACCTCCAAGACGCCGGACTaGACTTGCTTTCTGAATTTGGTTTTAACCATGCGA | + |
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Preference number: 6 (lower is better) Translates to: RVGIEMTSKTPD*TCFLNLVLTMR Trigger: TCGCATGGTTAAAACCAAATTCAGAAAGCAAGTGCAGTCCGGCGTCTTGGAGGTCATTTCAATACCCACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CAA 72 bp | TGCTCCCCTTCTTCTCAAGGAAGTTCCCTGATGATCTaGTTGTGTGGGCAGCTTTACGCTTCATTTGATACA | + |
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Preference number: 6 (lower is better) Translates to: CSPSSQGSSLMI*LCGQLYASFDT Trigger: TGTATCAAATGAAGCGTAAAGCTGCCCACACAACAAGATCATCAGGGAACTTCCTTGAGAAGAAGGGGAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CAA 90 bp | GACTCAATATGCTCCCCTTCTTCTCAAGGAAGTTCCCTGATGATCTaGTTGTGTGGGCAGCTTTACGCTTCATTTGATACAAGACTTGCA | + |
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Preference number: 6 (lower is better) Translates to: DSICSPSSQGSSLMI*LCGQLYASFDTRLA Trigger: TGCAAGTCTTGTATCAAATGAAGCGTAAAGCTGCCCACACAACAAGATCATCAGGGAACTTCCTTGAGAAGAAGGGGAGCATATTGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS GCA 72 bp | GGTATTGAAATGACCTCCAAGACGCCGGACTGCACTTaGTTTCTGAATTTGGTTTTAACCATGCGAACAACA | + |
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Preference number: 6 (lower is better) Translates to: GIEMTSKTPDCT*FLNLVLTMRTT Trigger: TGTTGTTCGCATGGTTAAAACCAAATTCAGAAAGCAAGTGCAGTCCGGCGTCTTGGAGGTCATTTCAATACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CCA 72 bp | CGATATCATCTTCTAGCTGTAAATAATACGTGGCCTTaGGCTGGGCATACAGCATCAGAATACAGAAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: RYHLLAVNNTWP*AGHTASEYRSP Trigger: TGGACTTCTGTATTCTGATGCTGTATGCCCAGCCCAAGGCCACGTATTATTTACAGCTAGAAGATGATATCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CAA 72 bp | TCCCCTTCTTCTCAAGGAAGTTCCCTGATGATCTTGTaGTGTGGGCAGCTTTACGCTTCATTTGATACAAGA | + |
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Preference number: 6 (lower is better) Translates to: SPSSQGSSLMIL*CGQLYASFDTR Trigger: TCTTGTATCAAATGAAGCGTAAAGCTGCCCACACAACAAGATCATCAGGGAACTTCCTTGAGAAGAAGGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS CAA 90 bp | TCAATATGCTCCCCTTCTTCTCAAGGAAGTTCCCTGATGATCTTGTaGTGTGGGCAGCTTTACGCTTCATTTGATACAAGACTTGCATTA | + |
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Preference number: 6 (lower is better) Translates to: SICSPSSQGSSLMIL*CGQLYASFDTRLAL Trigger: TAATGCAAGTCTTGTATCAAATGAAGCGTAAAGCTGCCCACACAACAAGATCATCAGGGAACTTCCTTGAGAAGAAGGGGAGCATATTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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| CDS TCA 72 bp | TTTAAGACTTCAAATTGGTTAGGAAGTGTTTCATGCTaGCTCAATATGCTCCCCTTCTTCTCAAGGAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: FKTSNWLGSVSC*LNMLPFFSRKF Trigger: GAACTTCCTTGAGAAGAAGGGGAGCATATTGAGTCAGCATGAAACACTTCCTAACCAATTTGAAGTCTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038692.6 |
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