Pregenerated sensors for MGARP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037161Ensembl transcript IDs: ENSMUST00000038154.12, ENSMUST00000108046.8, ENSMUST00000141156.3
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGCAGCCCCCTCCTGGCTaGTATCAGCGCCCTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKQPPPG*YQRPPG Trigger: GCCAGGAGGGCGCTGATACCAGCCAGGAGGGGGCTG...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTCAGCCCCCTCCTGGCTaGTATCAGCGCCCTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVQPPPG*YQRPPG Trigger: GCCAGGAGGGCGCTGATACCAGCCAGGAGGGGGCTG...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGTATCAGCCCCCTCCTaGCTGGTATCAGCGCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKVSAPS*LVSAPS Trigger: GGAGGGCGCTGATACCAGCCAGGAGGGGGCTGATAC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGTATCAGCCCCCTCCTaGCTGGTATCAGCGCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVVSAPS*LVSAPS Trigger: GGAGGGCGCTGATACCAGCCAGGAGGGGGCTGATAC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGTATCAGCGCCCTCCTaGCTGGTATCAGCCCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKVSAPS*LVSAPS Trigger: GGAGGGGGCTGATACCAGCCAGGAGGGCGCTGATAC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGCAGCCTCCTCCTTGGTaGTATCAGCGCCCTCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKQPPPW*YQRPPG Trigger: GCCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTG...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTCAGCCTCCTCCTTGGTaGTATCAGCGCCCTCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVQPPPW*YQRPPG Trigger: GCCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTG...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGCAGCGCCAGAGTCTTaGACACAGCCCTGCGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVAAPES*TQPCGD Trigger: ATCTCCGCAGGGCTGTGTCCAAGACTCTGGCGCTGC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038154.12 |
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| CDS-3UTR TCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGGTTTCTTCTTCTTGTaGCTCAGGCTGGGCAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKGFFFL*LRLGRG Trigger: CCCCCTGCCCAGCCTGAGTCACAAGAAGAAGAAACC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTATCCTGGTCTGGGGCTaGACTCTCCACCTCCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVILVWG*TLHLLS Trigger: ACTCAGGAGGTGGAGAGTGCAGCCCCAGACCAGGAT...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGATCCTGGTCTGGGGCTaGACTCTCCACCTCCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKILVWG*TLHLLS Trigger: ACTCAGGAGGTGGAGAGTGCAGCCCCAGACCAGGAT...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGAACGTCATCCTGGTCTaGGGCTGCACTCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKNVILV*GCTLHL Trigger: GAGGTGGAGAGTGCAGCCCCAGACCAGGATGACGTT...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTAACGTCATCCTGGTCTaGGGCTGCACTCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVNVILV*GCTLHL Trigger: GAGGTGGAGAGTGCAGCCCCAGACCAGGATGACGTT...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGTCTTGTGACTCAGGCTaGGCAGGGGGTTCTGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKSCDSG*AGGSEP Trigger: AGGCTCAGAACCCCCTGCCCAGCCTGAGTCACAAGA...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTTCTTGTGACTCAGGCTaGGCAGGGGGTTCTGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVSCDSG*AGGSEP Trigger: AGGCTCAGAACCCCCTGCCCAGCCTGAGTCACAAGA...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR TCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGAGTGTCTCCAGGCTCTaGACACACTTGCTCGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKSVSRL*THLLGF Trigger: GAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACT...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR TCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTAGTGTCTCCAGGCTCTaGACACACTTGCTCGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVSVSRL*THLLGF Trigger: GAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACT...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGGCCTGAGACTCTTCTaGAAGCACAACTGCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKGLRLF*KHNCSL Trigger: GAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGGCCTGAGACTCTTCTaGAAGCACAACTGCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVGLRLF*KHNCSL Trigger: GAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTTTCTGGAAGCACAACTaGAGCCTCTGGGACTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVFWKHN*SLWDFL Trigger: GAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAA...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTCACAACTGCAGCCTCTaGGACTTCCTCAGCATCTAC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVHNCSL*DFLSIY Trigger: GTAGATGCTGAGGAAGTCCCAGAGGCTGCAGTTGTG...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTTCGGCTTCTGCCACATaGTCTTCCTTTTCACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVSASAT*SSFSPG Trigger: TCCAGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGA...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGTCGGCTTCTGCCACATaGTCTTCCTTTTCACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKSASAT*SSFSPG Trigger: TCCAGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGA...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTCACTTGCTCGGCTTCTaGCACATGCTCTTCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVHLLGF*HMLFLF Trigger: GAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTG...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR GCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGCACTTGCTCGGCTTCTaGCACATGCTCTTCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKHLLGF*HMLFLF Trigger: GAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTG...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGCTCTTCCTTTTCACCTaGAAGTGGTTGCAACTCCGC | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKLFLFT*KWLQLR Trigger: GCGGAGTTGCAACCACTTCCAGGTGAAAAGGAAGAG...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTCTCTTCCTTTTCACCTaGAAGTGGTTGCAACTCCGC | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVLFLFT*KWLQLR Trigger: GCGGAGTTGCAACCACTTCCAGGTGAAAAGGAAGAG...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR TCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGAATATCCACCAGCACTaGCTGTCACACCTACAACCA | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKNIHQH*LSHLQP Trigger: TGGTTGTAGGTGTGACAGTCAGTGCTGGTGGATATT...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR TCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTAATATCCACCAGCACTaGCTGTCACACCTACAACCA | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVNIHQH*LSHLQP Trigger: TGGTTGTAGGTGTGACAGTCAGTGCTGGTGGATATT...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGTTTCCTCTGTGACCTaGGTTTCTTCTTCTTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKVSSVT*VSSSCD Trigger: GTCACAAGAAGAAGAAACCCAGGTCACAGAGGAAAC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGTTTCCTCTGTGACCTaGGTTTCTTCTTCTTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVVSSVT*VSSSCD Trigger: GTCACAAGAAGAAGAAACCCAGGTCACAGAGGAAAC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGGTAATAGATCATATTaGAGCCAGATGTTCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKGNRSY*SQMFQG Trigger: TCCCTGGAACATCTGGCTCCAATATGATCTATTACC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGGTAATAGATCATATTaGAGCCAGATGTTCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: KRKAKENQSDTGCIDNSVGNRSY*SQMFQG Trigger: TCCCTGGAACATCTGGCTCCAATATGATCTATTACC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CCA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGTCAGGAATTCAAGACTaGAACCCAGGAAGTCTAATT | + |
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Preference number: 4 (lower is better) Translates to: EFTANPVIWSYIEQSKRKSGIQD*NPGSLI Trigger: AATTAGACTTCCTGGGTTCCAGTCTTGAATTCCTGA...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108046.8 |
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| CDS CCA 90 bp | TCCTGGCTGGTATCAGCCCCCTCCTGGCTGGTATCAGCGCCCTCCTaGCTAGTATCAGCCCCCTCATTGCAAACGTCATCCTGGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: SWLVSAPSWLVSAPS*LVSAPSLQTSSWSG Trigger: CCCAGACCAGGATGACGTTTGCAATGAGGGGGCTGATACTAGCCAGGAGGGCGCTGATACCAGCCAGGAGGGGGCTGATACCAGCCAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS GCA 90 bp | GACCTCGGAGGGGGCGGAGGCCTGAGACTCTTCTGGAAGCACAACTaGAGCCTCTGGGACTTCCTCAGCATCTACCGATTCAGCTTCCGT | + |
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Preference number: 5 (lower is better) Translates to: DLGGGGGLRLFWKHN*SLWDFLSIYRFSFR Trigger: ACGGAAGCTGAATCGGTAGATGCTGAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCCTCCGCCCCCTCCGAGGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 90 bp | GGGGGCGGAGGCCTGAGACTCTTCTGGAAGCACAACTGCAGCCTCTaGGACTTCCTCAGCATCTACCGATTCAGCTTCCGTTACAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: GGGGLRLFWKHNCSL*DFLSIYRFSFRYSS Trigger: ACTGCTGTAACGGAAGCTGAATCGGTAGATGCTGAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCCTCCGCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS TCA 90 bp | GTAATAGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTGGATaGCATTCGGCGAAGAGATGCGTCCTTCCCCAGCGGCGCGGGACC | + |
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Preference number: 5 (lower is better) Translates to: VIDHIGARCSREFPG*HSAKRCVLPQRRGT Trigger: GGTCCCGCGCCGCTGGGGAAGGACGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCTATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038154.12 ENSMUST00000141156.3 |
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| CDS CCA 90 bp | CCAGGTAATAGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTaGATGACATTCGGCGAAGAGATGCGTCCTTCCCCAGCGGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: PGNRSYWSQMFQGIS*MTFGEEMRPSPAAR Trigger: CCGCGCCGCTGGGGAAGGACGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCTATTACCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038154.12 ENSMUST00000141156.3 |
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| CDS CCA 90 bp | GCTGTTTCCTCTGTGACCTGGGTTTCTTCTTCTTGTGACTCAGGCTaGGCAGGGGGTTCTGAGCCTAAGGGAGGGCTTTCTTCTAGTTCG | + |
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Preference number: 5 (lower is better) Translates to: AVSSVTWVSSSCDSG*AGGSEPKGGLSSSS Trigger: CGAACTAGAAGAAAGCCCTCCCTTAGGCTCAGAACCCCCTGCCCAGCCTGAGTCACAAGAAGAAGAAACCCAGGTCACAGAGGAAACAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS GCA 90 bp | GCAGTGTCTCCAGGCTCTGAACACACTTGCTCGGCTTCTGCCACATaGTCTTCCTTTTCACCTGGAAGTGGTTGCAACTCCGCCTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: AVSPGSEHTCSASAT*SSFSPGSGCNSAFV Trigger: AACAAAGGCGGAGTTGCAACCACTTCCAGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGGCAGCGCCAGAGTCTaGGACACAGCCCTGCGGAGA | + |
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Preference number: 5 (lower is better) Translates to: EFTANPVIWSYIEQSKRKGSARV*DTALRR Trigger: TCTCCGCAGGGCTGTGTCCAAGACTCTGGCGCTGCC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038154.12 |
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| CDS CCA 90 bp | CCAGGTAATAGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTaGATGACATTCGGCGAAGAGATGCGGAGATCAGGAATTCAAGAC | + |
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Preference number: 5 (lower is better) Translates to: PGNRSYWSQMFQGIS*MTFGEEMRRSGIQD Trigger: GTCTTGAATTCCTGATCTCCGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCTATTACCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108046.8 |
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| CDS TCA 90 bp | GTAATAGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTGGATaGCATTCGGCGAAGAGATGCGGAGATCAGGAATTCAAGACTGGA | + |
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Preference number: 5 (lower is better) Translates to: VIDHIGARCSREFPG*HSAKRCGDQEFKTG Trigger: TCCAGTCTTGAATTCCTGATCTCCGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCTATTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108046.8 |
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| CDS-3UTR CAA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGTACCTTCAGCCTCCTaGCTGTTATCAGCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: KRKAKENQSDTGCIDNSVVPSAS*LLSASS Trigger: GGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTAC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGTACCTTCAGCCTCCTaGCTGTTATCAGCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: EFTANPVIWSYIEQSKRKVPSAS*LLSASS Trigger: GGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTAC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGGTTGCAACTCCGCCTTaGTTTGTTCTTTCGGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: EFTANPVIWSYIEQSKRKVATPP*FVLSVQ Trigger: CTGAACCGAAAGAACAAACAAAGGCGGAGTTGCAAC...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTGTTGCAACTCCGCCTTaGTTTGTTCTTTCGGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: KRKAKENQSDTGCIDNSVVATPP*FVLSVQ Trigger: CTGAACCGAAAGAACAAACAAAGGCGGAGTTGCAAC...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | AAGAGAAAGGCAAAGGAAAATCAAAGTGACACCGGTTGCATAGATAACTCAGTTTACGTCTCACTTGCTTaGATGTTAAAGCCTTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: KRKAKENQSDTGCIDNSVYVSLA*MLKPCK Trigger: CTTACAAGGCTTTAACATCAAAGCAAGTGAGACGTA...AACTGAGTTATCTATGCAACCGGTGTCACTTTGATTTTCCTTTGCCTTTCTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS-3UTR CAA 90 bp | GAGTTCACAGCAAACCCAGTAATCTGGTCTTACATAGAACAAAGTAAGAGAAAGTACGTCTCACTTGCTTaGATGTTAAAGCCTTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: EFTANPVIWSYIEQSKRKYVSLA*MLKPCK Trigger: CTTACAAGGCTTTAACATCAAAGCAAGTGAGACGTA...CTTTCTCTTACTTTGTTCTATGTAAGACCAGATTACTGGGTTTGCTGTGAACTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | AGGGACCTCGGAGGGGGCGGAGGCCTGAGACTCTTCTaGAAGCACAACTGCAGCCTCTGGGACTTCCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RDLGGGGGLRLF*KHNCSLWDFLS Trigger: GCTGAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCCTCCGCCCCCTCCGAGGTCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CAA 90 bp | TCGGAGATCGAGCGCGGGTCCTCAGTAGTGGTACCTTCAGCCTCCTaGCTGTTATCAGCCTCCTCCTTGGTGGTATCAGCGCCCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SEIERGSSVVVPSAS*LLSASSLVVSAPSW Trigger: CCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTACCACTACTGAGGACCCGCGCTCGATCTCCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS TCA 72 bp | ACGTCATCCTGGTCTGGGGCTGCACTCTCCACCTCCTaGGTAGACTCAGGGACACTCTCGGTAGTCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: TSSWSGAALSTS*VDSGTLSVVST Trigger: GGTGGAGACTACCGAGAGTGTCCCTGAGTCTACTCAGGAGGTGGAGAGTGCAGCCCCAGACCAGGATGACGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | GTATCAGCCCCCTCCTGGCTGGTATCAGCGCCCTCCTaGCTAGTATCAGCCCCCTCATTGCAAACGTCATCC | + |
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Preference number: 6 (lower is better) Translates to: VSAPSWLVSAPS*LVSAPSLQTSS Trigger: GGATGACGTTTGCAATGAGGGGGCTGATACTAGCCAGGAGGGCGCTGATACCAGCCAGGAGGGGGCTGATAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CAA 72 bp | GTATCAGCGCCCTCCTGGCTAGTATCAGCCCCCTCATaGCAAACGTCATCCTGGTCTGGGGCTGCACTCTCC | + |
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Preference number: 6 (lower is better) Translates to: VSAPSWLVSAPS*QTSSWSGAALS Trigger: GGAGAGTGCAGCCCCAGACCAGGATGACGTTTGCAATGAGGGGGCTGATACTAGCCAGGAGGGCGCTGATAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS GCA 72 bp | AGCCCCCTCATTGCAAACGTCATCCTGGTCTGGGGCTaGACTCTCCACCTCCTGAGTAGACTCAGGGACACT | + |
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Preference number: 6 (lower is better) Translates to: SPLIANVILVWG*TLHLLSRLRDT Trigger: AGTGTCCCTGAGTCTACTCAGGAGGTGGAGAGTGCAGCCCCAGACCAGGATGACGTTTGCAATGAGGGGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | TACCTTCAGCCTCCTTGCTGTTATCAGCCTCCTCCTTaGTGGTATCAGCGCCCTCCTGGCTGGTATCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: YLQPPCCYQPPP*WYQRPPGWYQP Trigger: GGGCTGATACCAGCCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CAA 72 bp | GTACCTTCAGCCTCCTTGCTGTTATCAGCCTCCTCCTaGGTGGTATCAGCGCCCTCCTGGCTGGTATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: VPSASLLLSASS*VVSAPSWLVSA Trigger: GGCTGATACCAGCCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CAA 72 bp | GAGCGCGGGTCCTCAGTAGTGGTACCTTCAGCCTCCTaGCTGTTATCAGCCTCCTCCTTGGTGGTATCAGCG | + |
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Preference number: 6 (lower is better) Translates to: ERGSSVVVPSAS*LLSASSLVVSA Trigger: CGCTGATACCACCAAGGAGGAGGCTGATAACAGCAAGGAGGCTGAAGGTACCACTACTGAGGACCCGCGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CAA 72 bp | GCCAGAGTCTTGGACACAGCCCCAGCTCTAATAGAGTaGCAGTCCCGTGCTCCCCAGCAGTCGCTTAATGGC | + |
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Preference number: 6 (lower is better) Translates to: ARVLDTAPALIE*QSRAPQQSLNG Trigger: GCCATTAAGCGACTGCTGGGGAGCACGGGACTGCAACTCTATTAGAGCTGGGGCTGTGTCCAAGACTCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141156.3 |
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| CDS CCA 72 bp | AGTATCAGCCCCCTCATTGCAAACGTCATCCTGGTCTaGGGCTGCACTCTCCACCTCCTGAGTAGACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SISPLIANVILV*GCTLHLLSRLR Trigger: CCTGAGTCTACTCAGGAGGTGGAGAGTGCAGCCCCAGACCAGGATGACGTTTGCAATGAGGGGGCTGATACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | GGCCTGAGACTCTTCTGGAAGCACAACTGCAGCCTCTaGGACTTCCTCAGCATCTACCGATTCAGCTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: GLRLFWKHNCSL*DFLSIYRFSFR Trigger: ACGGAAGCTGAATCGGTAGATGCTGAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | TCTGTGACCTGGGTTTCTTCTTCTTGTGACTCAGGCTaGGCAGGGGGTTCTGAGCCTAAGGGAGGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SVTWVSSSCDSG*AGGSEPKGGLS Trigger: AGAAAGCCCTCCCTTAGGCTCAGAACCCCCTGCCCAGCCTGAGTCACAAGAAGAAGAAACCCAGGTCACAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS TCA 72 bp | CATATTGGAGCCAGATGTTCCAGGGAATTTCCTGGATaGCATTCGGCGAAGAGATGCGTCCTTCCCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: HIGARCSREFPG*HSAKRCVLPQR Trigger: CCGCTGGGGAAGGACGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038154.12 ENSMUST00000141156.3 |
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| CDS TCA 72 bp | CGATTCAGCTTCCGTTACAGCAGTGTCTCCAGGCTCTaGACACACTTGCTCGGCTTCTGCCACATGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RFSFRYSSVSRL*THLLGFCHMLF Trigger: GAAGAGCATGTGGCAGAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACTGCTGTAACGGAAGCTGAATCG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS GCA 72 bp | CCAGGCTCTGAACACACTTGCTCGGCTTCTGCCACATaGTCTTCCTTTTCACCTGGAAGTGGTTGCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: PGSEHTCSASAT*SSFSPGSGCNS Trigger: GGAGTTGCAACCACTTCCAGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTGTGTTCAGAGCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS GCA 72 bp | TCCGTTACAGCAGTGTCTCCAGGCTCTGAACACACTTaGTCGGCTTCTGCCACATGCTCTTCCTTTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: SVTAVSPGSEHT*SASATCSSFSP Trigger: AGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACTGCTGTAACGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS CCA 72 bp | AGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTaGATGACATTCGGCGAAGAGATGCGTCCTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: RSYWSQMFQGIS*MTFGEEMRPSP Trigger: TGGGGAAGGACGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038154.12 ENSMUST00000141156.3 |
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| CDS CAA 90 bp | TTGCTCGGCTTCTGCCACATGCTCTTCCTTTTCACCTGGAAGTGGTaGCAACTCCGCCTTTGTTTGTTCTTTCGGTTCAGCTACATGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LLGFCHMLFLFTWKW*QLRLCLFFRFSYMF Trigger: GAACATGTAGCTGAACCGAAAGAACAAACAAAGGCGGAGTTGCAACCACTTCCAGGTGAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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| CDS TCA 72 bp | CATATTGGAGCCAGATGTTCCAGGGAATTTCCTGGATaGCATTCGGCGAAGAGATGCGGAGATCAGGAATTC | + |
|
Preference number: 6 (lower is better) Translates to: HIGARCSREFPG*HSAKRCGDQEF Trigger: GAATTCCTGATCTCCGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108046.8 |
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| CDS CCA 72 bp | AGATCATATTGGAGCCAGATGTTCCAGGGAATTTCCTaGATGACATTCGGCGAAGAGATGCGGAGATCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSYWSQMFQGIS*MTFGEEMRRSG Trigger: TCCTGATCTCCGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108046.8 |
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| CDS TCA 72 bp | ATGTTAAAGCCTTGTAAGTGTAATATCCACCAGCACTaGCTGTCACACCTACAACCAGGTAATAGATCATAT | + |
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Preference number: 6 (lower is better) Translates to: MLKPCKCNIHQH*LSHLQPGNRSY Trigger: ATATGATCTATTACCTGGTTGTAGGTGTGACAGTCAGTGCTGGTGGATATTACACTTACAAGGCTTTAACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038154.12 ENSMUST00000108046.8 ENSMUST00000141156.3 |
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