Pregenerated sensors for MFSD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019080Ensembl transcript IDs: ENSMUST00000019224.9
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACGGGGTTGCCTGGTGCCAGCGGGGGATGGGTATTAGAGCCAGCTaGGTCCTCAGGCCTGTGTTTCTGCTCCACCCTAGCGAGTCCATG | + |
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Preference number: 1 (lower is better) Translates to: HGVAWCQRGMGIRAS*VLRPVFLLHPSESM Trigger: CATGGACTCGCTAGGGTGGAGCAGAAACACAGGCCTGAGGACTCAGCTGGCTCTAATACCCATCCCCCGCTGGCACCAGGCAACCCCGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR TCA 90 bp | GCTGAGAGGCCGATGACCACCTTACATGGGAGGGTGCCACATGATTaGGGCATGAGGCAAGCCAGACTGTGGCCACTACTCCGAGGGTGT | + |
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Preference number: 1 (lower is better) Translates to: AERPMTTLHGRVPHD*GMRQARLWPLLRGC Trigger: ACACCCTCGGAGTAGTGGCCACAGTCTGGCTTGCCTCATGCCTCAATCATGTGGCACCCTCCCATGTAAGGTGGTCATCGGCCTCTCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 90 bp | GCTGGACCGGCGCTTCTGGAGGAAGTACCTACACCTGGACTTTCATaGCCTGATGCACCTAGCTACAGAAGAGCTCCTGCTGAGAGGCCG | + |
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Preference number: 1 (lower is better) Translates to: AGPALLEEVPTPGLS*PDAPSYRRAPAERP Trigger: CGGCCTCTCAGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCGGTCCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 90 bp | TTTCTGCTCCACCCTAGCGAGTCCATGCTACCCAGCCCAGGTGTATaGGCTGGACCGGCGCTTCTGGAGGAAGTACCTACACCTGGACTT | + |
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Preference number: 1 (lower is better) Translates to: FLLHPSESMLPSPGV*AGPALLEEVPTPGL Trigger: AAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCGGTCCAGCCCATACACCTGGGCTGGGTAGCATGGACTCGCTAGGGTGGAGCAGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 90 bp | TGTGGCCACTACTCCGAGGGTGTCAGGCTCACCAAGGCCATGATGTaGCCATCACTGACTGTCAGGCAAAACCTTCTGGCTGCAGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: CGHYSEGVRLTKAMM*PSLTVRQNLLAAGR Trigger: CCTTCCTGCAGCCAGAAGGTTTTGCCTGACAGTCAGTGATGGCCACATCATGGCCTTGGTGAGCCTGACACCCTCGGAGTAGTGGCCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 90 bp | AGTCCATGCTACCCAGCCCAGGTGTATGGGCTGGACCGGCGCTTCTaGAGGAAGTACCTACACCTGGACTTTCATGCCCTGATGCACCTA | + |
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Preference number: 1 (lower is better) Translates to: SPCYPAQVYGLDRRF*RKYLHLDFHALMHL Trigger: TAGGTGCATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCGGTCCAGCCCATACACCTGGGCTGGGTAGCATGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 90 bp | GTAGCTCAGATGAGGTTACATGCTATCCTCCCACAGCTTCAGGACTaGGAGGACCAAATACGCCGGGATGTCCGCCAGCTCCTGTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: VAQMRLHAILPQLQD*EDQIRRDVRQLLSL Trigger: CAGGGACAGGAGCTGGCGGACATCCCGGCGTATTTGGTCCTCCCAGTCCTGAAGCTGTGGGAGGATAGCATGTAACCTCATCTGAGCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CAA 90 bp | GGGCTGTGGCCCGCATCTTCCATGGCATTGGTGAGGGCCACGGGGTaGCCTGGTGCCAGCGGGGGATGGGTATTAGAGCCAGCTGAGTCC | + |
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Preference number: 2 (lower is better) Translates to: GLWPASSMALVRATG*PGASGGWVLEPAES Trigger: GGACTCAGCTGGCTCTAATACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAATGCCATGGAAGATGCGGGCCACAGCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR CCA 90 bp | GACTGGGAGGACCAAATACGCCGGGATGTCCGCCAGCTCCTGTCCCTGAGGCCACCCAGGTGTATGGGCTaGACCGGCGCTTCTGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: DWEDQIRRDVRQLLSLRPPRCMG*TGASGG Trigger: TCCTCCAGAAGCGCCGGTCCAGCCCATACACCTGGG...TGGCCTCAGGGACAGGAGCTGGCGGACATCCCGGCGTATTTGGTCCTCCCAGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGTGAGGGCCACGGGGTTGCCTGGTGCCAGCGGGGGATGGGTATTAGAGCCAACACCTGGACTTTCATaGCCTGATGCACCTAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: LVRATGLPGASGGWVLEPTPGLS*PDAPSY Trigger: GTAGCTAGGTGCATCAGGGCATGAAAGTCCAGGTGT...TGGCTCTAATACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR TCA 90 bp | GACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGCACATGATTGAGGCATaGGGCAAGCCAGACTGTGGC | + |
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Preference number: 2 (lower is better) Translates to: DPTVQSLLGSRFPWLLRVHMIEA*GKPDCG Trigger: GCCACAGTCTGGCTTGCCTCATGCCTCAATCATGTG...CACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR CCA 90 bp | GCTTGGGACAGTGACATGGCCCCATTCAACCCTGACCCCACAGTTCAATCCCTGACCAAGGCCATGATGTaGCCATCACTGACTGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: AWDSDMAPFNPDPTVQSLTKAMM*PSLTVR Trigger: CCTGACAGTCAGTGATGGCCACATCATGGCCTTGGT...CAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGGCCATGTCACTGTCCCAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR TCA 90 bp | CACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGTGATTAGGGTGCCACATGATTaGGGCATGAGGCAAGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: HSSIPAWLKVSLAAPGVIRVPHD*GMRQAR Trigger: TCTGGCTTGCCTCATGCCTCAATCATGTGGCACCCT...AATCACACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR CCA 90 bp | GGACTTTCATGCCCTGATGCACCTAGCTACAGAAGAGCTCCTGCTGAGAGGCCGTCAGGCAAAACCTTCTaGCTGCAGGAAGGGGATAAG | + |
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Preference number: 2 (lower is better) Translates to: GLSCPDAPSYRRAPAERPSGKTF*LQEGDK Trigger: CTTATCCCCTTCCTGCAGCCAGAAGGTTTTGCCTGA...CGGCCTCTCAGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR GCA 90 bp | AAAGGTTTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGGCATTGGTGAGGGCCGCAAAACCTTCTGGCTaGAGGAAGGGGATAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: KGFQEGLWPASSMALVRAAKPSG*RKGIRR Trigger: TCTTCTTATCCCCTTCCTGCAGCCAGAAGGTTTTGC...GGCCCTCACCAATGCCATGGAAGATGCGGGCCACAGCCCTTCCTGAAAACCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR GCA 90 bp | CACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGTGATTCAGTTTGAGGAGAGCTaGATTTCCTGTGTCCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: HSSIPAWLKVSLAAPGVIQFEES*ISCVPD Trigger: GTCTGGGACACAGGAAATGCAGCTCTCCTCAAACTG...AATCACACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR GCA 90 bp | CCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTATTTTACATGACAGATaGTATGGTAGCTCAGATGAG | + |
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Preference number: 2 (lower is better) Translates to: PHSTLTPQFNPCLAQGFLILHDR*YGSSDE Trigger: CTCATCTGAGCTACCATAGCATCTGTCATGTAAAAT...AAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 72 bp | GTGAGGGCCACGGGGTTGCCTGGTGCCAGCGGGGGATaGGTATTAGAGCCAGCTGAGTCCTCAGGCCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: VRATGLPGASGG*VLEPAESSGLC Trigger: ACACAGGCCTGAGGACTCAGCTGGCTCTAATACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR TCA 72 bp | GCCTGGTGCCAGCGGGGGATGGGTATTAGAGCCAGCTaGGTCCTCAGGCCTGTGTTTCTGCTCCACCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: AWCQRGMGIRAS*VLRPVFLLHPS Trigger: GCTAGGGTGGAGCAGAAACACAGGCCTGAGGACTCAGCTGGCTCTAATACCCATCCCCCGCTGGCACCAGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 72 bp | CACCCTAGCGAGTCCATGCTACCCAGCCCAGGTGTATaGGCTGGACCGGCGCTTCTGGAGGAAGTACCTACA | + |
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Preference number: 3 (lower is better) Translates to: HPSESMLPSPGV*AGPALLEEVPT Trigger: TGTAGGTACTTCCTCCAGAAGCGCCGGTCCAGCCCATACACCTGGGCTGGGTAGCATGGACTCGCTAGGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR TCA 72 bp | ACCAAATACGCCGGGATGTCCGCCAGCTCCTGTCCCTaGGGCCAGAAGAAAGGTTTTCAGGAAGGGCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: TKYAGMSASSCP*GQKKGFQEGLW Trigger: CCACAGCCCTTCCTGAAAACCTTTCTTCTGGCCTCAGGGACAGGAGCTGGCGGACATCCCGGCGTATTTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 72 bp | GTATTAGAGCCAGCTGAGTCCTCAGGCCTGTGTTTCTaGTCCACCCTAGCGAGTCCATGCTACCCAGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: VLEPAESSGLCF*STLASPCYPAQ Trigger: CTGGGCTGGGTAGCATGGACTCGCTAGGGTGGAGCAGAAACACAGGCCTGAGGACTCAGCTGGCTCTAATAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 72 bp | TGGCCCCATTCAACCCTGACCCCACAGTTCAATCCCTaGTTGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGT | + |
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Preference number: 3 (lower is better) Translates to: WPHSTLTPQFNP*LAQGFLGCSGC Trigger: ACACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR TCA 72 bp | CCGATGACCACCTTACATGGGAGGGTGCCACATGATTaGGGCATGAGGCAAGCCAGACTGTGGCCACTACTC | + |
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Preference number: 3 (lower is better) Translates to: PMTTLHGRVPHD*GMRQARLWPLL Trigger: GAGTAGTGGCCACAGTCTGGCTTGCCTCATGCCTCAATCATGTGGCACCCTCCCATGTAAGGTGGTCATCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 72 bp | ATGAGGTTACATGCTATCCTCCCACAGCTTCAGGACTaGGAGGACCAAATACGCCGGGATGTCCGCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: MRLHAILPQLQD*EDQIRRDVRQL Trigger: GAGCTGGCGGACATCCCGGCGTATTTGGTCCTCCCAGTCCTGAAGCTGTGGGAGGATAGCATGTAACCTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR TCA 72 bp | CACCTAGCTACAGAAGAGCTCCTGCTGAGAGGCCGATaGCCACCTTACATGGGAGGGTGCCACATGATTGAG | + |
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Preference number: 3 (lower is better) Translates to: HLATEELLLRGR*PPYMGGCHMIE Trigger: CTCAATCATGTGGCACCCTCCCATGTAAGGTGGTCATCGGCCTCTCAGCAGGAGCTCTTCTGTAGCTAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CCA 72 bp | TACTCCGAGGGTGTCAGGCTCACCAAGGCCATGATGTaGCCATCACTGACTGTCAGGCAAAACCTTCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: YSEGVRLTKAMM*PSLTVRQNLLA Trigger: AGCCAGAAGGTTTTGCCTGACAGTCAGTGATGGCCACATCATGGCCTTGGTGAGCCTGACACCCTCGGAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 72 bp | GCGCTTCTGGAGGAAGTACCTACACCTGGACTTTCATaGCCTGATGCACCTAGCTACAGAAGAGCTCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: ALLEEVPTPGLS*PDAPSYRRAPA Trigger: AGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR-3UTR CAA 90 bp | CGGCGCTTCTGGAGGAAGTACCTACACCTGGACTTTCATGCCCTGATGCACCTAAACATAGCCTTCAGTTaGAGGAGAGCTGCATTTCCT | + |
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Preference number: 3 (lower is better) Translates to: RRFWRKYLHLDFHALMHLNIAFS*RRAAFP Trigger: AGGAAATGCAGCTCTCCTCAAACTGAAGGCTATGTT...TAGGTGCATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 72 bp | CATGACAGATGCTATGGTAGCTCAGATGAGGTTACATaGTATCCTCCCACAGCTTCAGGACTGGGAGGACCA | + |
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Preference number: 3 (lower is better) Translates to: HDRCYGSSDEVT*YPPTASGLGGP Trigger: TGGTCCTCCCAGTCCTGAAGCTGTGGGAGGATAGCATGTAACCTCATCTGAGCTACCATAGCATCTGTCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR GCA 72 bp | GTGGCCATCACTGACTGTCAGGCAAAACCTTCTGGCTaGAGGAAGGGGATAAGAAGATCCAAACTGCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: VAITDCQAKPSG*RKGIRRSKLQN Trigger: ATTCTGCAGTTTGGATCTTCTTATCCCCTTCCTGCAGCCAGAAGGTTTTGCCTGACAGTCAGTGATGGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CAA 72 bp | TTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGGCATaGGTGAGGGCCACGGGGTTGCCTGGTGCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: FQEGLWPASSMA*VRATGLPGASG Trigger: CCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAATGCCATGGAAGATGCGGGCCACAGCCCTTCCTGAAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CAA 72 bp | CCCGCATCTTCCATGGCATTGGTGAGGGCCACGGGGTaGCCTGGTGCCAGCGGGGGATGGGTATTAGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PASSMALVRATG*PGASGGWVLEP Trigger: TGGCTCTAATACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAATGCCATGGAAGATGCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | TCCATGGCATTGGTGAGGGCCACGGGGTTGCCTGGTGCCAGCGGGGGATGGGTACCTGGGCTGTTGAGGTaGAAGAGCAGAGCAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SMALVRATGLPGASGGWVPGLLR*KSRAVW Trigger: CCAGACTGCTCTGCTCTTCCACCTCAACAGCCCAGG...TACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAATGCCATGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | GACTGGGAGGACCAAATACGCCGGGATGTCCGCCAGCTCCTGTCCCTGAGGCCAAGGAGGAGCCAGCAATaGAGCAGGTCACAGCACCCA | + |
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Preference number: 4 (lower is better) Translates to: DWEDQIRRDVRQLLSLRPRRSQQ*SRSQHP Trigger: TGGGTGCTGTGACCTGCTCCATTGCTGGCTCCTCCT...TGGCCTCAGGGACAGGAGCTGGCGGACATCCCGGCGTATTTGGTCCTCCCAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR TCA 90 bp | GACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGGTGGGGTGTATGCTCTaGGGCCTGAGGCCATGGCAG | + |
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Preference number: 4 (lower is better) Translates to: DPTVQSLLGSRFPWLLRVVGCML*GLRPWQ Trigger: CTGCCATGGCCTCAGGCCTCAGAGCATACACCCCAC...CACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR TCA 90 bp | CTACTCCGAGGGTGTCAGGCTCACCAAGGCCATGATGTGGCCATCACTGACTGTTGGCCCCTGGGCTGTTaGGGTGGAAGAGCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLRGCQAHQGHDVAITDCWPLGC*GGRAEQ Trigger: CTGCTCTGCTCTTCCACCTCAACAGCCCAGGGGCCA...ACAGTCAGTGATGGCCACATCATGGCCTTGGTGAGCCTGACACCCTCGGAGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | CTGGACCGGCGCTTCTGGAGGAAGTACCTACACCTGGACTTTCATGCCCTGATGGTCCACGCTGGCCCCTaGGCTGTTGAGGTGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LDRRFWRKYLHLDFHALMVHAGP*AVEVEE Trigger: CTCTTCCACCTCAACAGCCCAGGGGCCAGCGTGGAC...CATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCGGTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR TCA 90 bp | GGACTTTCATGCCCTGATGCACCTAGCTACAGAAGAGCTCCTGCTGAGAGGCCGAAACTGCCCCTCTCATaGCTGTGCCAGGGTCCACGC | + |
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Preference number: 4 (lower is better) Translates to: GLSCPDAPSYRRAPAERPKLPLS*LCQGPR Trigger: GCGTGGACCCTGGCACAGTCATGAGAGGGGCAGTTT...CGGCCTCTCAGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR GCA 90 bp | CTACTCCGAGGGTGTCAGGCTCACCAAGGCCATGATGTGGCCATCACTGACTGTCACATCCTGCACCGCTaGACCCAGATTCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLRGCQAHQGHDVAITDCHILHR*TQIQQQ Trigger: CTGCTGCTGAATCTGGGTGCAGCGGTGCAGGATGTG...ACAGTCAGTGATGGCCACATCATGGCCTTGGTGAGCCTGACACCCTCGGAGTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR TCA 90 bp | CACCTGGACTTTCATGCCCTGATGCACCTAGCTACAGAAGAGCTCCTGCTGAGACACCCAGCTTGTAGGTaGGCACAAAGCCCGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: HLDFHALMHLATEELLLRHPACR*AQSPLS Trigger: GGACAGCGGGCTTTGTGCTCACCTACAAGCTGGGTG...TCTCAGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCCAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | GCTTGGGACAGTGACATGGCCCCATTCAACCCTGACCCCACAGTTCAATCCCTGGTGGCCAAGAGAGAGTaGGGAAGAGGACCAACAGTC | + |
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Preference number: 4 (lower is better) Translates to: AWDSDMAPFNPDPTVQSLVAKRE*GRGPTV Trigger: GACTGTTGGTCCTCTTCCCCACTCTCTCTTGGCCAC...CAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGGCCATGTCACTGTCCCAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | GGACTTTCATGCCCTGATGCACCTAGCTACAGAAGAGCTCCTGCTGAGAGGCCGGAGGCAGAAGCACCATaGTCCAGCAGGAGAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GLSCPDAPSYRRAPAERPEAEAP*SSRRSG Trigger: TCCACTTCTCCTGCTGGACCATGGTGCTTCTGCCTC...CGGCCTCTCAGCAGGAGCTCTTCTGTAGCTAGGTGCATCAGGGCATGAAAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CAA 72 bp | CCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTaGGCTCAAGGTTTCCTTGGCTGCTCCGGGTGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PHSTLTPQFNPC*AQGFLGCSGCD Trigger: ATCACACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR TCA 90 bp | CGGCGCTTCTGGAGGAAGTACCTACACCTGGACTTTCATGCCCTGATGCACCTACAGAACAGGCAGGGCTaGGAGTACAAGGAAGACAGC | + |
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Preference number: 4 (lower is better) Translates to: RRFWRKYLHLDFHALMHLQNRQG*EYKEDS Trigger: GCTGTCTTCCTTGTACTCTCAGCCCTGCCTGTTCTG...TAGGTGCATCAGGGCATGAAAGTCCAGGTGTAGGTACTTCCTCCAGAAGCGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR GCA 90 bp | CCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTGAAGTGGAAACAGGCTaGCAGCACCCTGCTCACCCA | + |
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Preference number: 4 (lower is better) Translates to: PHSTLTPQFNPCLAQGFLEVETG*QHPAHP Trigger: TGGGTGAGCAGGGTGCTGGCAGCCTGTTTCCACTTC...AAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR GCA 90 bp | GATGAGGTTACATGCTATCCTCCCACAGCTTCAGGACTGGGAGGACCAAATACGCTCCCAAGGCGGAGCTaGAGCACTGTCTTCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: DEVTCYPPTASGLGGPNTLPRRS*STVFNS Trigger: GCTGTTGAAGACAGTGCTGCAGCTCCGCCTTGGGAG...CGTATTTGGTCCTCCCAGTCCTGAAGCTGTGGGAGGATAGCATGTAACCTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR GCA 90 bp | CCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTTTACCTGGGAGCAGCTTaGCCAACAGTTCCAGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: PHSTLTPQFNPCLAQGFLYLGAA*PTVPEW Trigger: CCACTCTGGAACTGTTGGGCAAGCTGCTCCCAGGTA...AAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR GCA 90 bp | TTGAGGAGAGCTGCATTTCCTGTGTCCCAGACATCCAGGCCATACATAGCTTTACCTGTTTGGCCAGCTTaGGGAGGAGGCAACACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LRRAAFPVSQTSRPYIALPVWPA*GGGNTA Trigger: GGCTGTGTTGCCTCCTCCGCAAGCTGGCCAAACAGG...TAAAGCTATGTATGGCCTGGATGTCTGGGACACAGGAAATGCAGCTCTCCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | GCCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTCCAACAGTTCCAGAGTaGCCAGGAAGCTGTAATGTG | + |
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Preference number: 4 (lower is better) Translates to: APFNPDPTVQSLLGSRFPPTVPE*PGSCNV Trigger: CACATTACAGCTTCCTGGCCACTCTGGAACTGTTGG...AGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| 3UTR CAA 72 bp | CCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTaGGCTGCTCCGGGTGTGATTTTACATGACAGATGC | + |
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Preference number: 4 (lower is better) Translates to: PHSSIPAWLKVS*AAPGVILHDRC Trigger: GCATCTGTCATGTAAAATCACACCCGGAGCAGCCAAGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | ATTTCCTGTGTCCCAGACATCCAGGCCATACATAGCTTTATTGGCTTTATAGACCTTCAACAGCTTCAGTaGCTGCCAGTGCCTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: ISCVPDIQAIHSFIGFIDLQQLQ*LPVPGQ Trigger: CTGGCCAGGCACTGGCAGCCACTGAAGCTGTTGAAG...GTCTATAAAGCCAATAAAGCTATGTATGGCCTGGATGTCTGGGACACAGGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CCA 90 bp | ATTTCCTGTGTCCCAGACATCCAGGCCATACATAGCTTTATTGGCTTTATAGACAAATGGGAAGCAAACTaGACTGCAGTCCATAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ISCVPDIQAIHSFIGFIDKWEAN*TAVHRA Trigger: TGCCCTATGGACTGCAGTCCAGTTTGCTTCCCATTT...GTCTATAAAGCCAATAAAGCTATGTATGGCCTGGATGTCTGGGACACAGGAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CAA 90 bp | TTCCATGGCATTGGTGAGGGCCACGGGGTTGCCTGGTGCCAGCGGGGGATGGGTCTGGCCCCTGGGCTGTaGAGGTGGAAGAGCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: FHGIGEGHGVAWCQRGMGLAPGL*RWKSRA Trigger: TGCTCTGCTCTTCCACCTCAACAGCCCAGGGGCCAG...ACCCATCCCCCGCTGGCACCAGGCAACCCCGTGGCCCTCACCAATGCCATGGAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 90 bp | CTCCCAAGGCGGAGCTGCAGCACTGTCTTCAACAGCTTCAGTGGCTaGCAGTGCCTGGCCAGTAGAGCCCCACCCAAGGAGGAGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LPRRSCSTVFNSFSG*QCLASRAPPKEEPA Trigger: TGCTGGCTCCTCCTTGGGTGGGGCTCTACTGGCCAGGCACTGGCAGCCACTGAAGCTGTTGAAGACAGTGCTGCAGCTCCGCCTTGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 90 bp | GCCAGTGCCTGGCCAGTAGAGCCCCACCCAAGGAGGAGCCAGCAATaGAGCAGGTCACAGCACCCAAGCCACTCCATAGCCCCAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: ASAWPVEPHPRRSQQ*SRSQHPSHSIAPSL Trigger: CAGACTTGGGGCTATGGAGTGGCTTGGGTGCTGTGACCTGCTCCATTGCTGGCTCCTCCTTGGGTGGGGCTCTACTGGCCAGGCACTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 90 bp | GCGGTGCCCACGCCAGCTTTAACAGCCATGGAGCATACAATCCCTTaGTTAGACCCACGCGCGTTAGGGAGAGGCCACGGGCCCGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: AVPTPALTAMEHTIP*LDPRALGRGHGPAV Trigger: TACTGCGGGCCCGTGGCCTCTCCCTAACGCGCGTGGGTCTAACCAAGGGATTGTATGCTCCATGGCTGTTAAAGCTGGCGTGGGCACCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 90 bp | TCCACGCTGGCCCCTGGGCTGTTGAGGTGGAAGAGCAGAGCAGTCTaGCAAGCCAAACTCCCAAGGCGGAGCTGCAGCACTGTCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: STLAPGLLRWKSRAV*QAKLPRRSCSTVFN Trigger: GTTGAAGACAGTGCTGCAGCTCCGCCTTGGGAGTTTGGCTTGCCAGACTGCTCTGCTCTTCCACCTCAACAGCCCAGGGGCCAGCGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 90 bp | GCACCCAAGCCACTCCATAGCCCCAAGTCTGAGGCAGAAGCACCATaGTCCAGCAGGAGAAGTGGAAACAGGCTGCCAGCACCCTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: APKPLHSPKSEAEAP*SSRRSGNRLPAPCS Trigger: TGAGCAGGGTGCTGGCAGCCTGTTTCCACTTCTCCTGCTGGACCATGGTGCTTCTGCCTCAGACTTGGGGCTATGGAGTGGCTTGGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 90 bp | TTTGGCTCTAGGAGTTGCACAGCGAGTGTGTCCAGAGCCACATCCTaGACCGCTGCACCCAGATTCAGCAGCAGTAGCAGCCCCATCACG | + |
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Preference number: 5 (lower is better) Translates to: FGSRSCTASVSRATS*TAAPRFSSSSSPIT Trigger: CGTGATGGGGCTGCTACTGCTGCTGAATCTGGGTGCAGCGGTGCAGGATGTGGCTCTGGACACACTCGCTGTGCAACTCCTAGAGCCAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 90 bp | ACCTGTACAGTGTTCCCAGGTCCCAACTCCTTTGGCTCTAGGAGTTaGACAGCGAGTGTGTCCAGAGCCACATCCTGCACCGCTGCACCC | + |
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Preference number: 5 (lower is better) Translates to: TCTVFPGPNSFGSRS*TASVSRATSCTAAP Trigger: GGGTGCAGCGGTGCAGGATGTGGCTCTGGACACACTCGCTGTGCAACTCCTAGAGCCAAAGGAGTTGGGACCTGGGAACACTGTACAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS-3UTR CAA 90 bp | GCCCCATTCAACCCTGACCCCACAGTTCAATCCCTGCTTGGCTCAAGGTTTCCTCCCTGTTTGGCCAGCTaGCGGAGGAGGCAACACAGC | + |
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Preference number: 5 (lower is better) Translates to: APFNPDPTVQSLLGSRFPPCLAS*RRRQHS Trigger: GCTGTGTTGCCTCCTCCGCAAGCTGGCCAAACAGGG...AGGAAACCTTGAGCCAAGCAGGGATTGAACTGTGGGGTCAGGGTTGAATGGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS TCA 72 bp | CCAGCAGTCCACACACCAAGCCCAGGGACAGTGTGCTaGGTGTTAACCAGACCCGCGGGGTGCCCCGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PAVHTPSPGTVC*VLTRPAGCPAC Trigger: ACAGGCGGGGCACCCCGCGGGTCTGGTTAACACTCAGCACACTGTCCCTGGGCTTGGTGTGTGGACTGCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS TCA 72 bp | ACAGGCTGCCAGCACCCTGCTCACCCAGCTTGTAGGTaGGCACAAAGCCCGCTGTCCAGAGGGTCCCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: TGCQHPAHPACR*AQSPLSRGSQA Trigger: TGCCTGGGACCCTCTGGACAGCGGGCTTTGTGCTCACCTACAAGCTGGGTGAGCAGGGTGCTGGCAGCCTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | CCCTCTCATGACTGTGCCAGGGTCCACGCTGGCCCCTaGGCTGTTGAGGTGGAAGAGCAGAGCAGTCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: PSHDCARVHAGP*AVEVEEQSSLA Trigger: TGCCAGACTGCTCTGCTCTTCCACCTCAACAGCCCAGGGGCCAGCGTGGACCCTGGCACAGTCATGAGAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CAA 90 bp | AGCGGTGCCCACGCCAGCTTTAACAGCCATGGAGCATACAATCCCTaGGTTAGACCCACGCGCGTTAGGGAGAGGCCACGGGCCCGCAGT | + |
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Preference number: 6 (lower is better) Translates to: SGAHASFNSHGAYNP*VRPTRVRERPRARS Trigger: ACTGCGGGCCCGTGGCCTCTCCCTAACGCGCGTGGGTCTAACCAAGGGATTGTATGCTCCATGGCTGTTAAAGCTGGCGTGGGCACCGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | TGGCCAGTAGAGCCCCACCCAAGGAGGAGCCAGCAATaGAGCAGGTCACAGCACCCAAGCCACTCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: WPVEPHPRRSQQ*SRSQHPSHSIA Trigger: GGCTATGGAGTGGCTTGGGTGCTGTGACCTGCTCCATTGCTGGCTCCTCCTTGGGTGGGGCTCTACTGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | GCCCCTGGGCTGTTGAGGTGGAAGAGCAGAGCAGTCTaGCAAGCCAAACTCCCAAGGCGGAGCTGCAGCACT | + |
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Preference number: 6 (lower is better) Translates to: APGLLRWKSRAV*QAKLPRRSCST Trigger: AGTGCTGCAGCTCCGCCTTGGGAGTTTGGCTTGCCAGACTGCTCTGCTCTTCCACCTCAACAGCCCAGGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | CGCGCGTTAGGGAGAGGCCACGGGCCCGCAGTAAAATaGGAAGCAAACTGGACTGCAGTCCATAGGGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RALGRGHGPAVK*EANWTAVHRAD Trigger: GTCTGCCCTATGGACTGCAGTCCAGTTTGCTTCCCATTTTACTGCGGGCCCGTGGCCTCTCCCTAACGCGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 72 bp | AGGAGTTGCACAGCGAGTGTGTCCAGAGCCACATCCTaGACCGCTGCACCCAGATTCAGCAGCAGTAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSCTASVSRATS*TAAPRFSSSSS Trigger: GCTGCTACTGCTGCTGAATCTGGGTGCAGCGGTGCAGGATGTGGCTCTGGACACACTCGCTGTGCAACTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 72 bp | GTGTTCCCAGGTCCCAACTCCTTTGGCTCTAGGAGTTaGACAGCGAGTGTGTCCAGAGCCACATCCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: VFPGPNSFGSRS*TASVSRATSCT Trigger: GGTGCAGGATGTGGCTCTGGACACACTCGCTGTGCAACTCCTAGAGCCAAAGGAGTTGGGACCTGGGAACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | ACGCCAGCTTTAACAGCCATGGAGCATACAATCCCTTaGTTAGACCCACGCGCGTTAGGGAGAGGCCACGGG | + |
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Preference number: 6 (lower is better) Translates to: TPALTAMEHTIP*LDPRALGRGHG Trigger: CCCGTGGCCTCTCCCTAACGCGCGTGGGTCTAACCAAGGGATTGTATGCTCCATGGCTGTTAAAGCTGGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CCA 72 bp | CCACTCCATAGCCCCAAGTCTGAGGCAGAAGCACCATaGTCCAGCAGGAGAAGTGGAAACAGGCTGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PLHSPKSEAEAP*SSRRSGNRLPA Trigger: TGCTGGCAGCCTGTTTCCACTTCTCCTGCTGGACCATGGTGCTTCTGCCTCAGACTTGGGGCTATGGAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CAA 72 bp | CACGCCAGCTTTAACAGCCATGGAGCATACAATCCCTaGGTTAGACCCACGCGCGTTAGGGAGAGGCCACGG | + |
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Preference number: 6 (lower is better) Translates to: HASFNSHGAYNP*VRPTRVRERPR Trigger: CCGTGGCCTCTCCCTAACGCGCGTGGGTCTAACCAAGGGATTGTATGCTCCATGGCTGTTAAAGCTGGCGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS TCA 72 bp | ACTGGGTGCCAGGCGGAGATCCAGAACAGGCAGGGCTaGGAGTACAAGGAAGACAGCAAAGCAGAGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: TGCQAEIQNRQG*EYKEDSKAEMW Trigger: CCACATCTCTGCTTTGCTGTCTTCCTTGTACTCTCAGCCCTGCCTGTTCTGGATCTCCGCCTGGCACCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS GCA 72 bp | GTAGCCTGCAGGGCTCTGGGTGCTAGCTGGCTACAGTaGATCATCACAGTGAATGTGGCAGTGGTGACCACA | + |
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Preference number: 6 (lower is better) Translates to: VACRALGASWLQ*IITVNVAVVTT Trigger: TGTGGTCACCACTGCCACATTCACTGTGATGATGCACTGTAGCCAGCTAGCACCCAGAGCCCTGCAGGCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CAA 72 bp | CGACCACCTGTACAGTGTTCCCAGGTCCCAACTCCTTaGGCTCTAGGAGTTGCACAGCGAGTGTGTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: RPPVQCSQVPTP*ALGVAQRVCPE Trigger: CTCTGGACACACTCGCTGTGCAACTCCTAGAGCCAAAGGAGTTGGGACCTGGGAACACTGTACAGGTGGTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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| CDS CAA 90 bp | GCTTGTAAGCGACCACCTGTACAGTGTTCCCAGGTCCCAACTCCTTaGGCTCTAGGAGTTGCACAGCGAGTGTGTCCAGAGCCACATCCT | + |
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Preference number: 6 (lower is better) Translates to: ACKRPPVQCSQVPTP*ALGVAQRVCPEPHP Trigger: AGGATGTGGCTCTGGACACACTCGCTGTGCAACTCCTAGAGCCAAAGGAGTTGGGACCTGGGAACACTGTACAGGTGGTCGCTTACAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019224.9 |
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