Pregenerated sensors for MFSD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027775Ensembl transcript IDs: ENSMUST00000029344.10
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGAGAATACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTaGGCCGAGCAGGCACCCAGCCCATTCATAAGCATGTCAAGGCTC | + |
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Preference number: 1 (lower is better) Translates to: LENTLKRRKSRWTTL*AEQAPSPFISMSRL Trigger: GAGCCTTGACATGCTTATGAATGGGCTGGGTGCCTGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGTATTCTCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 90 bp | GTTCTTAACCACCGAGTCATCTCTCCAGCCCTTGGTGCCAAAGCTTaGAGCATACAAGGCTATGTACCCCACGTACCTTACACCTATAAA | + |
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Preference number: 1 (lower is better) Translates to: VLNHRVISPALGAKA*SIQGYVPHVPYTYK Trigger: TTTATAGGTGTAAGGTACGTGGGGTACATAGCCTTGTATGCTTCAAGCTTTGGCACCAAGGGCTGGAGAGATGACTCGGTGGTTAAGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 90 bp | ATAGAGTCACTAACAAACCAGGCAATGTCCCTGCTCTCATGGAGCTaGCAATCTAAGGACGATCAAATACACCCCAAGCCCACAATGCCA | + |
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Preference number: 1 (lower is better) Translates to: IESLTNQAMSLLSWS*QSKDDQIHPKPTMP Trigger: TGGCATTGTGGGCTTGGGGTGTATTTGATCGTCCTTAGATTGTCAGCTCCATGAGAGCAGGGACATTGCCTGGTTTGTTAGTGACTCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR TCA 90 bp | TCCCCACACCTCATGTGGACACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAAAAAGGAAGTCTTCCTaGAGGTTTCCAGTCAGCCGC | + |
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Preference number: 2 (lower is better) Translates to: SPHLMWTQWEDRTSAEGPKRKSS*RFPVSR Trigger: GCGGCTGACTGGAAACCTTCAGGAAGACTTCCTTTT...TGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTGTCCACATGAGGTGTGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR GCA 90 bp | TCCCCACACCTCATGTGGACACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCACTTCCAAAGGCTTGCTaGTCAGCAGCCATCACTAAC | + |
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Preference number: 2 (lower is better) Translates to: SPHLMWTQWEDRTSAEGPLPKAC*SAAITN Trigger: GTTAGTGATGGCTGCTGAGCAGCAAGCCTTTGGAAG...TGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTGTCCACATGAGGTGTGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR GCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTCGTCCCAGCAGAAGATaGAGATCCTTACAGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCRPSRR*RSLQRS Trigger: AGACCTCTGTAAGGATCTGCATCTTCTGCTGGGACG...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR CAA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTaGACATGTGCTATGAGAGTCACATGTAGTCAAAGCCTCGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: HSGKTGPVQRGQFIY*TCAMRVTCSQSLEA Trigger: AGCTTCGAGGCTTTGACTACATGTGACTCTCATAGCACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR GCA 90 bp | AAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTGCTATGAGACCTTACAGAGGTCTTTaGCTGAATGTTCCAGATTCC | + |
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Preference number: 2 (lower is better) Translates to: KTGPVQRGQFIYLTCAMRPYRGL*LNVPDS Trigger: GGAATCTGGAACATTCAGGCAAAGACCTCTGTAAGG...TCTCATAGCACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR GCA 90 bp | GATCCCTGGGAGCTGGAGTTAGGTGACTATGAGTGGCCCCATGTGGATGCTGAATTTGTGGCTTTTTCCTaGTATAATACAAAGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: DPWELELGDYEWPHVDAEFVAFS*YNTKER Trigger: CCTTTCCTTTGTATTATAGCAGGAAAAAGCCACAAA...TTCAGCATCCACATGGGGCCACTCATAGTCACCTAACTCCAGCTCCCAGGGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR TCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTGTAGCCATCATAAACTaGAGGACACTTTTATTGTCT | + |
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Preference number: 2 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCVAIIN*RTLLLS Trigger: AGACAATAAAAGTGTCCTTCAGTTTATGATGGCTAC...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR GCA 90 bp | TCTGTACTGCTTAAGATTCAGCAGGGCACTGGATCCCTGGGAGCTGGAGTTAGGATCAAGTCTACCTTTTaGATTGGTTTTATGGATCCA | + |
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Preference number: 2 (lower is better) Translates to: SVLLKIQQGTGSLGAGVRIKSTF*IGFMDP Trigger: TGGATCCATAAAACCAATGCAAAAGGTAGACTTGAT...CCTAACTCCAGCTCCCAGGGATCCAGTGCCCTGCTGAATCTTAAGCAGTACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR CCA 90 bp | GGCCAGTTCATATACTTGACATGTGCTATGAGAGTCACATGTAGTCAAAGCCTCGACCCTCCTGTTTTGTaGCTTTTTCCTGCTATAATA | + |
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Preference number: 2 (lower is better) Translates to: GQFIYLTCAMRVTCSQSLDPPVL*LFPAII Trigger: TATTATAGCAGGAAAAAGCCACAAAACAGGAGGGTC...GAGGCTTTGACTACATGTGACTCTCATAGCACATGTCAAGTATATGAACTGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR CCA 90 bp | AGAGAATACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTGAGCCGAGCATGCAGATTTGATTTCTaGAAATTATCTTCCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: REYTQEKEIEMDNPVSRACRFDF*KLSSTG Trigger: TCCTGTGGAAGATAATTTCCAGAAATCAAATCTGCA...TGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGTATTCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR CAA 90 bp | AGAAGTTTCTATGTTAGGATGATTCTGAGCTGGAAACTACGGTTTTaGTTTAAGTCAGATGGAACCAGGTTAGAGTGTGCACTAGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: RSFYVRMILSWKLRF*FKSDGTRLECALEN Trigger: ATTCTCTAGTGCACACTCTAACCTGGTTCCATCTGACTTAAACAAAAACCGTAGTTTCCAGCTCAGAATCATCCTAACATAGAAACTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR CCA 72 bp | GCATGTCAAGGCTCCCCACACCTCATGTGGACACAGTaGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCAT | + |
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Preference number: 3 (lower is better) Translates to: ACQGSPHLMWTQ*EDRTSAEGPVH Trigger: ATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTGTCCACATGAGGTGTGGGGAGCCTTGACATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR CAA 90 bp | TCCCCACACCTCATGTGGACACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCATCCTTACAGAGGTCTTaGCCTGAATGTTCCAGATTC | + |
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Preference number: 3 (lower is better) Translates to: SPHLMWTQWEDRTSAEGPSLQRS*PECSRF Trigger: GAATCTGGAACATTCAGGCAAAGACCTCTGTAAGGA...TGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTGTCCACATGAGGTGTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR-3UTR CAA 90 bp | GATCCCTGGGAGCTGGAGTTAGGTGACTATGAGTGGCCCCATGTGGATGCTGAAAAAACTTCCAAAGGCTaGCTGCTCAGCAGCCATCAC | + |
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Preference number: 3 (lower is better) Translates to: DPWELELGDYEWPHVDAEKTSKG*LLSSHH Trigger: GTGATGGCTGCTGAGCAGCAAGCCTTTGGAAGTTTT...TTCAGCATCCACATGGGGCCACTCATAGTCACCTAACTCCAGCTCCCAGGGATC 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 72 bp | CACCGAGTCATCTCTCCAGCCCTTGGTGCCAAAGCTTaGAGCATACAAGGCTATGTACCCCACGTACCTTAC | + |
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Preference number: 3 (lower is better) Translates to: HRVISPALGAKA*SIQGYVPHVPY Trigger: GTAAGGTACGTGGGGTACATAGCCTTGTATGCTTCAAGCTTTGGCACCAAGGGCTGGAGAGATGACTCGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 72 bp | ACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTaGGCCGAGCAGGCACCCAGCCCATTCATAAGCATG | + |
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Preference number: 3 (lower is better) Translates to: TLKRRKSRWTTL*AEQAPSPFISM Trigger: CATGCTTATGAATGGGCTGGGTGCCTGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 72 bp | AAGCCCACAATGCCACAAATTCCTGACAAATCAAAGTaGGCTAAAAAGGCACAGGATGAGGCTTTAAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: KPTMPQIPDKSK*AKKAQDEALKF Trigger: GAACTTTAAAGCCTCATCCTGTGCCTTTTTAGCTCACTTTGATTTGTCAGGAATTTGTGGCATTGTGGGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR TCA 72 bp | CACGACCAGAAACAAACCTTCCACAACACATGGTTATaGAAGGCTAAGATAGTCTGCATGAATCACTTTAAG | + |
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Preference number: 3 (lower is better) Translates to: HDQKQTFHNTWL*KAKIVCMNHFK Trigger: CTTAAAGTGATTCATGCAGACTATCTTAGCCTTTCATAACCATGTGTTGTGGAAGGTTTGTTTCTGGTCGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR GCA 72 bp | AATCTAAGGACGATCAAATACACCCCAAGCCCACAATaGCACAAATTCCTGACAAATCAAAGTGAGCTAAAA | + |
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Preference number: 3 (lower is better) Translates to: NLRTIKYTPSPQ*HKFLTNQSELK Trigger: TTTTAGCTCACTTTGATTTGTCAGGAATTTGTGGCATTGTGGGCTTGGGGTGTATTTGATCGTCCTTAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | TCTGTACTGCTTAAGATTCAGCAGGGCACTGGATCCCTGGGAGCTGGAGTTAGGAGCCAAGGAAGCACATaGGCGACAGCACCACGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SVLLKIQQGTGSLGAGVRSQGST*ATAPRA Trigger: GGCTCGTGGTGCTGTCGCTCATGTGCTTCCTTGGCT...CCTAACTCCAGCTCCCAGGGATCCAGTGCCCTGCTGAATCTTAAGCAGTACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CCA 90 bp | AAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTGCTATGAGAACGCCCAGGGTCATGTaGCCAGCTGAGCCCAGTAAT | + |
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Preference number: 4 (lower is better) Translates to: KTGPVQRGQFIYLTCAMRTPRVM*PAEPSN Trigger: ATTACTGGGCTCAGCTGGCCACATGACCCTGGGCGT...TCTCATAGCACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | TCTGTACTGCTTAAGATTCAGCAGGGCACTGGATCCCTGGGAGCTGGAGTTAGGAAGAAACACAGGCAATaGAGAACACCTCCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SVLLKIQQGTGSLGAGVRKKHRQ*RTPPAA Trigger: TGCTGCTGGAGGTGTTCTTCATTGCCTGTGTTTCTT...CCTAACTCCAGCTCCCAGGGATCCAGTGCCCTGCTGAATCTTAAGCAGTACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTCATACAGCCATCCCATaGGGTTCATATTCACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCHTAIP*GSYSLC Trigger: GCACAGTGAATATGAACCTCATGGGATGGCTGTATG...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR GCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTGGTTCATATTCACTGTaGTTCCAATTCTGGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCGSYSL*FQFWPC Trigger: GCATGGCCAGAATTGGAAGCACAGTGAATATGAACC...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTACACATAGCAATCCATaGGTTCCAAAAGGTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCTHSNP*VPKGEG Trigger: GCCTTCACCTTTTGGAACCCATGGATTGCTATGTGT...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | AGAGAATACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTGAGCCGAGCACAATTCTGGCCATGCTaGGTTGAAGTCCAAACACCA | + |
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Preference number: 4 (lower is better) Translates to: REYTQEKEIEMDNPVSRAQFWPC*VEVQTP Trigger: TGGTGTTTGGACTTCAACTCAGCATGGCCAGAATTG...TGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGTATTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | AGAGAATACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTGAGCCGAGCAAGGCATACAGCAGCATaGATTTCGTGGTGTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: REYTQEKEIEMDNPVSRARHTAA*ISWCSL Trigger: AAGTGAACACCACGAAATTCATGCTGCTGTATGCCT...TGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGTATTCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | AGATGCAGATCCTTACAGAGGTCTTTGCCTGAATGTTCCAGATTCCGTAAACTGGACCACAGCCAGCAGTaGCAAAGAAACACAGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: RCRSLQRSLPECSRFRKLDHSQQ*QRNTGN Trigger: ATTGCCTGTGTTTCTTTGTCACTGCTGGCTGTGGTC...CAGTTTACGGAATCTGGAACATTCAGGCAAAGACCTCTGTAAGGATCTGCATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CCA 90 bp | AAGGAAAGGCTTCATCCGCAGGACGCCCTTATTAGAAATCGTCCCAGCAGAAGAACAGCATATGTATTCTaGGCAACTGCTAAGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: KERLHPQDALIRNRPSRRTAYVF*ATAKDS Trigger: AGAGTCCTTAGCAGTTGCCCAGAATACATATGCTGT...TCTTCTGCTGGGACGATTTCTAATAAGGGCGTCCTGCGGATGAAGCCTTTCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CCA 90 bp | AGATGCAGATCCTTACAGAGGTCTTTGCCTGAATGTTCCAGATTCCGTAAACTGTATGAATGCCACCATTaGCCACAATGCACAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: RCRSLQRSLPECSRFRKLYECHH*PQCTGQ Trigger: CTGGCCTGTGCATTGTGGCCAATGGTGGCATTCATA...CAGTTTACGGAATCTGGAACATTCAGGCAAAGACCTCTGTAAGGATCTGCATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| 3UTR CAA 72 bp | AAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTaGACATGTGCTATGAGAGTCACATGTAGTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: KTGPVQRGQFIY*TCAMRVTCSQS Trigger: GCTTTGACTACATGTGACTCTCATAGCACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR TCA 90 bp | AAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTGCTATGAGATGGAGACATGGGAGCTaGTATGATATACACGATACT | + |
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Preference number: 4 (lower is better) Translates to: KTGPVQRGQFIYLTCAMRWRHGS*YDIHDT Trigger: AGTATCGTGTATATCATATCAGCTCCCATGTCTCCA...TCTCATAGCACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR GCA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTATGAAGTATTTTCTCTaGTCTCCGATCCAAATAAGC | + |
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Preference number: 4 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCMKYFL*SPIQIS Trigger: GCTTATTTGGATCGGAGAGCAGAGAAAATACTTCAT...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS GCA 90 bp | CTGCCGAAGCCAAGGAAGCACATGAGCGACAGCACCACGAGCCGGTaGGCCAGGCGGCTGGGGTCGCAGAGCGCGGACAGAGCGCGAGGG | + |
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Preference number: 5 (lower is better) Translates to: LPKPRKHMSDSTTSR*ARRLGSQSADRARG Trigger: CCCTCGCGCTCTGTCCGCGCTCTGCGACCCCAGCCGCCTGGCGCACCGGCTCGTGGTGCTGTCGCTCATGTGCTTCCTTGGCTTCGGCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CAA 90 bp | TCTGTACTGCTTAAGATTCAGCAGGGCACTGGATCCCTGGGAGCTGGAGTTAGGTCTGGCCATGCTGAGTaGAAGTCCAAACACCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: SVLLKIQQGTGSLGAGVRSGHAE*KSKHQV Trigger: AACCTGGTGTTTGGACTTCAACTCAGCATGGCCAGA...CCTAACTCCAGCTCCCAGGGATCCAGTGCCCTGCTGAATCTTAAGCAGTACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CAA 90 bp | CACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCAGTTCATATACTTGACATGTTCCATGAAGAAAACTTaGCCCAGCCCGATGAACGGG | + |
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Preference number: 5 (lower is better) Translates to: HSGKTGPVQRGQFIYLTCSMKKT*PSPMNG Trigger: CCCGTTCATCGGGCTGGGCAAAGTTTTCTTCATGGA...ACATGTCAAGTATATGAACTGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CAA 90 bp | TCCCCACACCTCATGTGGACACAGTGGGAAGACAGGACCAGTGCAGAGGGGCCATCCGTTCCCTTTGTTTaGCAGAATAATTTAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: SPHLMWTQWEDRTSAEGPSVPFV*QNNLDS Trigger: GGAATCTAAATTATTCTGCAAAACAAAGGGAACGGA...TGGCCCCTCTGCACTGGTCCTGTCTTCCCACTGTGTCCACATGAGGTGTGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS-3UTR CAA 90 bp | AGAGAATACACTCAAGAGAAGGAAATCGAGATGGACAACCCTGTGAGCCGAGCAACCCAGATGATGTTCTaGCCTGTTTTATCCACCAAG | + |
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Preference number: 5 (lower is better) Translates to: REYTQEKEIEMDNPVSRATQMMF*PVLSTK Trigger: CTTGGTGGATAAAACAGGCAAGAACATCATCTGGGT...TGCTCGGCTCACAGGGTTGTCCATCTCGATTTCCTTCTCTTGAGTGTATTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS CCA 72 bp | GGGTCGCAGAGCGCGGACAGAGCGCGAGGGGCGCCATaGACTGCGCTGTCCGCCTCGCGGCGGCCCCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: GSQSADRARGAP*TALSASRRPPS Trigger: GCTTGGGGGCCGCCGCGAGGCGGACAGCGCAGTCCATGGCGCCCCTCGCGCTCTGTCCGCGCTCTGCGACCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS TCA 72 bp | CCAGCAAGGATAGCGATGACGGCCAGCCCGAGGTTCTaGATAGACTGCATGAATCCATATGCAGTCCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: PARIAMTASPRF*IDCMNPYAVPS Trigger: GCTGGGGACTGCATATGGATTCATGCAGTCTATTCAGAACCTCGGGCTGGCCGTCATCGCTATCCTTGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS TCA 72 bp | ACACGAGGGTGGCGGCCACCGCATACAGGACCCAGATaGTGTTCTTGCCTGTTTTATCCACCAAGAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: TRGWRPPHTGPR*CSCLFYPPRVQ Trigger: TTGGACTCTTGGTGGATAAAACAGGCAAGAACATCATCTGGGTCCTGTATGCGGTGGCCGCCACCCTCGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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| CDS CAA 90 bp | GACACGAGGGTGGCGGCCACCGCATACAGGACCCAGATGATGTTCTaGCCTGTTTTATCCACCAAGAGTCCAAATAATGGAGACATGGGA | + |
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Preference number: 6 (lower is better) Translates to: DTRVAATAYRTQMMF*PVLSTKSPNNGDMG Trigger: TCCCATGTCTCCATTATTTGGACTCTTGGTGGATAAAACAGGCAAGAACATCATCTGGGTCCTGTATGCGGTGGCCGCCACCCTCGTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029344.10 |
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