Pregenerated sensors for MFNG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018169Ensembl transcript IDs: ENSMUST00000018313.6
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGTCACCCAGAGGCCCTGCCAGGGACCATCTGCCAGTGTGCACTaGACTGAGAGCCCTCAGGACTGCTTGGGAGGTGAGGGAGTGGTC | + |
|
Preference number: 1 (lower is better) Translates to: PVTQRPCQGPSASVH*TESPQDCLGGEGVV Trigger: GACCACTCCCTCACCTCCCAAGCAGTCCTGAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTCCCTGGCAGGGCCTCTGGGTGACAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 90 bp | CCAAGCAGTGTCCATATCGTAGCCTTTCCTGTCACCCAGAGGCCCTaGCAGGGACCATCTGCCAGTGTGCACTGGACTGAGAGCCCTCAG | + |
|
Preference number: 1 (lower is better) Translates to: PSSVHIVAFPVTQRP*QGPSASVHWTESPQ Trigger: CTGAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTCCCTGGCAGGGCCTCTGGGTGACAGGAAAGGCTACGATATGGACACTGCTTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR TCA 90 bp | ACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGACAGTaGCCAAAGGTCGGTTGCAATTGGCACCTGAGCCTTCTGGGCTTC | + |
|
Preference number: 1 (lower is better) Translates to: TGSHGSSSQQRRLGQ*PKVGCNWHLSLLGF Trigger: GAAGCCCAGAAGGCTCAGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | GACCATCTGCCAGTGTGCACTGGACTGAGAGCCCTCAGGACTGCTTaGGAGGTGAGGGAGTGGTCAGGCAGTAGCATCCATCATCCTTTG | + |
|
Preference number: 1 (lower is better) Translates to: DHLPVCTGLRALRTA*EVREWSGSSIHHPL Trigger: CAAAGGATGATGGATGCTACTGCCTGACCACTCCCTCACCTCCCAAGCAGTCCTGAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | TCCAGAAACCCTTCTATTGGCTTTGCTCAGTTCCACTGGGTCACATaGCAGCTCCTCACAGCAGAGAAGGCTGGGACAGTGACCAAAGGT | + |
|
Preference number: 1 (lower is better) Translates to: SRNPSIGFAQFHWVT*QLLTAEKAGTVTKG Trigger: ACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 90 bp | GGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTaGTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAA | + |
|
Preference number: 1 (lower is better) Translates to: GSWAGNVFQKPFYWL*SVPLGHMAAPHSRE Trigger: TTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | GGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCTCAGTTCCACTaGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGACAGTG | + |
|
Preference number: 1 (lower is better) Translates to: GMYSRNPSIGFAQFH*VTWQLLTAEKAGTV Trigger: CACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | AAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTaGCTTTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGC | + |
|
Preference number: 1 (lower is better) Translates to: KMGSWAGNVFQKPFY*LCSVPLGHMAAPHS Trigger: GCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | GTTTCCCCAGATTCAGCCGTCACACCCACATTCATAGTAGGAAGATaGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGC | + |
|
Preference number: 1 (lower is better) Translates to: VSPDSAVTPTFIVGR*GLGLGMYSRNPSIG Trigger: GCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAATGTGGGTGTGACGGCTGAATCTGGGGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 90 bp | AGATTCAGCCGTCACACCCACATTCATAGTAGGAAGATGGGGTCTTaGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCTCA | + |
|
Preference number: 1 (lower is better) Translates to: RFSRHTHIHSRKMGS*AGNVFQKPFYWLCS Trigger: TGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAATGTGGGTGTGACGGCTGAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR GCA 90 bp | TGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGACGTCACCCAGAGGCCCTaGCAGGGACCATCTGCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: CSVPLGHMAAPHSREGWDVTQRP*QGPSAS Trigger: ACTGGCAGATGGTCCCTGGCAGGGCCTCTGGGTGAC...GTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR CCA 90 bp | CTCACAGCAGAGAAGGCTGGGACAGTGACCAAAGGTCGGTTGCAATTGGCACCTGCCCTCAGGACTGCTTaGGAGGTGAGGGAGTGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: LTAEKAGTVTKGRLQLAPALRTA*EVREWS Trigger: TGACCACTCCCTCACCTCCCAAGCAGTCCTGAGGGC...AGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR TCA 90 bp | CTCACAGCAGAGAAGGCTGGGACAGTGACCAAAGGTCGGTTGCAATTGGCACCTCAGTGTGCACTGGACTaGGAGCCCTCAGGACTGCTT | + |
|
Preference number: 2 (lower is better) Translates to: LTAEKAGTVTKGRLQLAPQCALD*EPSGLL Trigger: AAGCAGTCCTGAGGGCTCTCAGTCCAGTGCACACTG...AGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR GCA 90 bp | GCCCAAGACACCCTCAACACCAAGCAGTGTCCATATCGTAGCCTTTCCTGTCACGAGAGCCCTCAGGACTaGTTGGGAGGTGAGGGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: AQDTLNTKQCPYRSLSCHESPQD*LGGEGV Trigger: CACTCCCTCACCTCCCAAGCAGTCCTGAGGGCTCTC...GTGACAGGAAAGGCTACGATATGGACACTGCTTGGTGTTGAGGGTGTCTTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CAA 90 bp | CAGCTCCTCACAGCAGAGAAGGCTGGGACAGTGACCAAAGGTCGGTaGCAATTGGCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGGTCC | + |
|
Preference number: 2 (lower is better) Translates to: QLLTAEKAGTVTKGR*QLAPEPSGLLKSRS Trigger: GGACCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR TCA 90 bp | AGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCTTCACCCTCAGGAGGGTaGGGACCCCTATCCCCTCCC | + |
|
Preference number: 2 (lower is better) Translates to: RWGLGLGMYSRNPSIGFASPSGG*GPLSPP Trigger: GGGAGGGGATAGGGGTCCTCACCCTCCTGAGGGTGA...AGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR TCA 90 bp | CTTTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGTCTCTAAGGAATGACTaGGGCCAAAGCCAGAGGCTA | + |
|
Preference number: 2 (lower is better) Translates to: LCSVPLGHMAAPHSREGWSLRND*GQSQRL Trigger: TAGCCTCTGGCTTTGGCCTCAGTCATTCCTTAGAGA...CCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CAA 90 bp | GAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATaGGCTTTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: EDGVLGWECIPETLL*ALLSSTGSHGSSSQ Trigger: CTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR GCA 90 bp | GAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGGACCATCTGCCAGTGTaGACTGGACTGAGAGCCCTC | + |
|
Preference number: 2 (lower is better) Translates to: EDGVLGWECIPETLLLALDHLPV*TGLRAL Trigger: GAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTC...CAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCTCAGTTGGGAGGTGAGGGAGTaGTCAGGCAGTAGCATCCAT | + |
|
Preference number: 2 (lower is better) Translates to: GVLGWECIPETLLLALLSWEVRE*SGSSIH Trigger: ATGGATGCTACTGCCTGACCACTCCCTCACCTCCCA...ACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR CCA 90 bp | TTCATAGTAGGAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTTTCCACTGGGTCACATaGCAGCTCCTCACAGCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: FIVGRWGLGLGMYSRNPSFHWVT*QLLTAE Trigger: CTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAA...AGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 72 bp | TCACCCAGAGGCCCTGCCAGGGACCATCTGCCAGTGTaGACTGGACTGAGAGCCCTCAGGACTGCTTGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: SPRGPARDHLPV*TGLRALRTAWE Trigger: CTCCCAAGCAGTCCTGAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTCCCTGGCAGGGCCTCTGGGTGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 72 bp | CCCCTATCCCCTCCCACACACCAACTCAAGCGTTCCTaGCGCCTCTGTGGTATGACCAGCCCAAGACACCCT | + |
|
Preference number: 3 (lower is better) Translates to: PLSPPTHQLKRS*RLCGMTSPRHP Trigger: AGGGTGTCTTGGGCTGGTCATACCACAGAGGCGGCAGGAACGCTTGAGTTGGTGTGTGGGAGGGGATAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 72 bp | GTCCATATCGTAGCCTTTCCTGTCACCCAGAGGCCCTaGCAGGGACCATCTGCCAGTGTGCACTGGACTGAG | + |
|
Preference number: 3 (lower is better) Translates to: VHIVAFPVTQRP*QGPSASVHWTE Trigger: CTCAGTCCAGTGCACACTGGCAGATGGTCCCTGGCAGGGCCTCTGGGTGACAGGAAAGGCTACGATATGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 72 bp | CCAGTGTGCACTGGACTGAGAGCCCTCAGGACTGCTTaGGAGGTGAGGGAGTGGTCAGGCAGTAGCATCCAT | + |
|
Preference number: 3 (lower is better) Translates to: PVCTGLRALRTA*EVREWSGSSIH Trigger: ATGGATGCTACTGCCTGACCACTCCCTCACCTCCCAAGCAGTCCTGAGGGCTCTCAGTCCAGTGCACACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR-3UTR CAA 90 bp | GCCCAAGACACCCTCAACACCAAGCAGTGTCCATATCGTAGCCTTTCCTGTCACAGCCCTCAGGACTGCTaGGGAGGTGAGGGAGTGGTC | + |
|
Preference number: 3 (lower is better) Translates to: AQDTLNTKQCPYRSLSCHSPQDC*GGEGVV Trigger: GACCACTCCCTCACCTCCCAAGCAGTCCTGAGGGCT...GTGACAGGAAAGGCTACGATATGGACACTGCTTGGTGTTGAGGGTGTCTTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR TCA 72 bp | CACACCAACTCAAGCGTTCCTGCCGCCTCTGTGGTATaGCCAGCCCAAGACACCCTCAACACCAAGCAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: HTNSSVPAASVV*PAQDTLNTKQC Trigger: ACACTGCTTGGTGTTGAGGGTGTCTTGGGCTGGTCATACCACAGAGGCGGCAGGAACGCTTGAGTTGGTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR TCA 72 bp | CATGGCAGCTCCTCACAGCAGAGAAGGCTGGGACAGTaGCCAAAGGTCGGTTGCAATTGGCACCTGAGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: HGSSSQQRRLGQ*PKVGCNWHLSL Trigger: AAGGCTCAGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 72 bp | CCTTCTATTGGCTTTGCTCAGTTCCACTGGGTCACATaGCAGCTCCTCACAGCAGAGAAGGCTGGGACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: PSIGFAQFHWVT*QLLTAEKAGTV Trigger: CACTGTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 72 bp | TCCAGAAACCCTTCTATTGGCTTTGCTCAGTTCCACTaGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: SRNPSIGFAQFH*VTWQLLTAEKA Trigger: AGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR TCA 72 bp | CCTGGCCTTCTCCCAATGACTCTAGTCTCTAAGGAATaGCTGAGGCCAAAGCCAGAGGCTAGATTCCATGCA | + |
|
Preference number: 3 (lower is better) Translates to: PGLLPMTLVSKE*LRPKPEARFHA Trigger: TGCATGGAATCTAGCCTCTGGCTTTGGCCTCAGTCATTCCTTAGAGACTAGAGTCATTGGGAGAAGGCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR GCA 72 bp | GCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTaGTCAGTTCCACTGGGTCACATGGCAGCTCCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: AGNVFQKPFYWL*SVPLGHMAAPH Trigger: GTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 72 bp | GATTCAGCCGTCACACCCACATTCATAGTAGGAAGATaGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCT | + |
|
Preference number: 3 (lower is better) Translates to: DSAVTPTFIVGR*GLGLGMYSRNP Trigger: AGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAATGTGGGTGTGACGGCTGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CCA 72 bp | CGTCACACCCACATTCATAGTAGGAAGATGGGGTCTTaGGCTGGGAATGTATTCCAGAAACCCTTCTATTGG | + |
|
Preference number: 3 (lower is better) Translates to: RHTHIHSRKMGS*AGNVFQKPFYW Trigger: CCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAATGTGGGTGTGACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | GGCCCTGCCAGGGACCATCTGCCAGTGTGCACTGGACTGAGAGCCCTCAGGACTACCTGCTCCGGAAGCTaGGCGGCCCCCAGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GPARDHLPVCTGLRALRTTCSGS*AAPSSC Trigger: GCAGCTGCTGGGGGCCGCCCAGCTTCCGGAGCAGGT...AGTCCTGAGGGCTCTCAGTCCAGTGCACACTGGCAGATGGTCCCTGGCAGGGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR GCA 90 bp | TTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGAGCGGCCCCCAGCAGCTaGAGGGTTTCCAGGTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LLSSTGSHGSSSQQRRLGAAPSS*RVSRCE Trigger: CTCACACCTGGAAACCCTGCAGCTGCTGGGGGCCGC...TCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | TTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGATGCAGCTCAGAGGCGTaGATGGGCCGGTTCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LLSSTGSHGSSSQQRRLGCSSEA*MGRFRL Trigger: CAGCCTGAACCGGCCCATCCACGCCTCTGAGCTGCA...TCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR TCA 90 bp | TGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGGACCATCGGGGAGCCGGATaGGAGCAGAAGTGTCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: CSVPLGHMAAPHSREGWDHRGAG*EQKCPQ Trigger: TTGTGGACACTTCTGCTCTCATCCGGCTCCCCGATG...GTCCCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | CAATTGGCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGGTCCATTGGCCAGCTGGAGGGGTCCTCTTCATaGGAGAAGGGGCCCGGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: QLAPEPSGLLKSRSIGQLEGSSS*EKGPGS Trigger: GCTACCGGGCCCCTTCTCCCATGAAGAGGACCCCTC...CAGCTGGCCAATGGACCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR TCA 90 bp | ACACCAAGCAGTGTCCATATCGTAGCCTTTCCTGTCACCCAGAGGCCCTGCCAGCCAGCTTGCACTCGATaGTGTAGCCCACAGTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TPSSVHIVAFPVTQRPCQPACTR*CSPQCS Trigger: ACTGCACTGTGGGCTACATCATCGAGTGCAAGCTGG...CTGGCAGGGCCTCTGGGTGACAGGAAAGGCTACGATATGGACACTGCTTGGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR TCA 90 bp | CTCACAGCAGAGAAGGCTGGGACAGTGACCAAAGGTCGGTTGCAATTGGCACCTCAGGACAGAGCAGGATaGCTGTGCTCTGCAGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: LTAEKAGTVTKGRLQLAPQDRAG*LCSAEQ Trigger: CTGTTCTGCAGAGCACAGTCATCCTGCTCTGTCCTG...AGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CAA 72 bp | GAGAAGGCTGGGACAGTGACCAAAGGTCGGTTGCAATaGGCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EKAGTVTKGRLQ*APEPSGLLKSR Trigger: CCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CAA 72 bp | ACAGCAGAGAAGGCTGGGACAGTGACCAAAGGTCGGTaGCAATTGGCACCTGAGCCTTCTGGGCTTCTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: TAEKAGTVTKGR*QLAPEPSGLLK Trigger: CTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTGCAACCGACCTTTGGTCACTGTCCCAGCCTTCTCTGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR GCA 90 bp | CTTTGCTCAGTTCCACTGGGTCACATGGCAGCTCCTCACAGCAGAGAAGGCTGGAAGATGAATGTCTGTTaGCTGATCCTGGAGACCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LCSVPLGHMAAPHSREGWKMNVC*LILETH Trigger: GTGGGTCTCCAGGATCAGGCAACAGACATTCATCTT...CCAGCCTTCTCTGCTGTGAGGAGCTGCCATGTGACCCAGTGGAACTGAGCAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR GCA 90 bp | CAATTGGCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGGTCCATTGGCCAGCTGGAAGGCATCGAACTCTaGAGCCATCTTGCAGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: QLAPEPSGLLKSRSIGQLEGIEL*SHLAGQ Trigger: CTGTCCTGCAAGATGGCTGCAGAGTTCGATGCCTTC...CAGCTGGCCAATGGACCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR GCA 90 bp | GCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGGTCCATTGGCCAGCTGAGCAGCAATGTTTTCAACAGCTaGAGCAGAGCCTTGGGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: APEPSGLLKSRSIGQLSSNVFNS*SRALGF Trigger: GAACCCCAAGGCTCTGCTGCAGCTGTTGAAAACATT...GCTGCTCAGCTGGCCAATGGACCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | GAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGGGAGCCGCTGGCCCATaGCACCATCTTCAAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: EDGVLGWECIPETLLLALGAAGP*HHLQSQ Trigger: CTGGCTTTGAAGATGGTGCCATGGGCCAGCGGCTCC...CAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR GCA 90 bp | GGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCTCAGTGGTTCAGGCTGGGCTTaGCCACATAGACATCACGGT | + |
|
Preference number: 4 (lower is better) Translates to: GVLGWECIPETLLLALLSGSGWA*PHRHHG Trigger: ACCGTGATGTCTATGTGGGCAAGCCCAGCCTGAACC...ACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | CAATTGGCACCTGAGCCTTCTGGGCTTCTAAAGTCTAGGTCCATTGGCCAGCTGGCTGCAGCAGAGCCTTaGGGTTCACATAGTTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QLAPEPSGLLKSRSIGQLAAAEP*GSHSCH Trigger: ATGACAACTATGTGAACCCCAAGGCTCTGCTGCAGC...CAGCTGGCCAATGGACCTAGACTTTAGAAGCCCAGAAGGCTCAGGTGCCAATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | TTCATAGTAGGAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTTGGGCCGGTTCAGGCTaGGCTTGCCCACATAGACAT | + |
|
Preference number: 4 (lower is better) Translates to: FIVGRWGLGLGMYSRNPSWAGSG*ACPHRH Trigger: ATGTCTATGTGGGCAAGCCCAGCCTGAACCGGCCCA...AGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTCCTACTATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CCA 90 bp | AACACCAAGCAGTGTCCATATCGTAGCCTTTCCTGTCACCCAGAGGCCCTGCCAATCTTCAAAGCCAGTTaGCGGTTGATGCAGAAACCA | + |
|
Preference number: 4 (lower is better) Translates to: NTKQCPYRSLSCHPEALPIFKAS*RLMQKP Trigger: TGGTTTCTGCATCAACCGCCAACTGGCTTTGAAGAT...TGGCAGGGCCTCTGGGTGACAGGAAAGGCTACGATATGGACACTGCTTGGTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| 3UTR CAA 72 bp | GTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATaGGCTTTGCTCAGTTCCACTGGGTCACATGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VLGWECIPETLL*ALLSSTGSHGS Trigger: GCTGCCATGTGACCCAGTGGAACTGAGCAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 90 bp | CCTGGGTTCCGTTGGTTCAGCCTGAGCGCGCCCTGTATCATCCTCTaGGACAAACTTGAGTGGTATCGTAGAGACAGGAGCCCCACGCAC | + |
|
Preference number: 5 (lower is better) Translates to: PGFRWFSLSAPCIIL*DKLEWYRRDRSPTH Trigger: GTGCGTGGGGCTCCTGTCTCTACGATACCACTCAAGTTTGTCCCAGAGGATGATACAGGGCGCGCTCAGGCTGAACCAACGGAACCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 90 bp | ATCCTGGAGACCCACGTGTCTAGTAGCAGGTCCAGGCGGGAGCGATaGAAGGCCCAGGTAGTCTTGACTGCGATGAAGATGTCGCCTAGC | + |
|
Preference number: 5 (lower is better) Translates to: ILETHVSSSRSRRER*KAQVVLTAMKMSPS Trigger: GCTAGGCGACATCTTCATCGCAGTCAAGACTACCTGGGCCTTCCATCGCTCCCGCCTGGACCTGCTACTAGACACGTGGGTCTCCAGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS TCA 90 bp | TCTTGCAGGACAGAGCAGGATGACTGTGCTCTGCAGAACAGTTGGTaGCCACGAGGTGCGGGCCTAGTCTCTCCTGGAGGCGTTCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: SCRTEQDDCALQNSW*PRGAGLVSPGGVHL Trigger: CAGATGAACGCCTCCAGGAGAGACTAGGCCCGCACCTCGTGGTCACCAACTGTTCTGCAGAGCACAGTCATCCTGCTCTGTCCTGCAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CAA 90 bp | AGGACTGCTTGGGAGGTGAGGGAGTGGTCAGGCAGTAGCATCCATCATCCTTTGTGCTCTGCAGAACAGTaGGTGACCACGAGGTGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: RTAWEVREWSGSSIHHPLCSAEQ*VTTRCG Trigger: CCCGCACCTCGTGGTCACCAACTGTTCTGCAGAGCA...CAAAGGATGATGGATGCTACTGCCTGACCACTCCCTCACCTCCCAAGCAGTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS GCA 90 bp | GTGGCAGAACCACCTGAGGCCACTGACCAAGAAGGCATCGAACTCTaGAGCCATCTTGCAGGACAGAGCAGGATGACTGTGCTCTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: VAEPPEATDQEGIEL*SHLAGQSRMTVLCR Trigger: TCTGCAGAGCACAGTCATCCTGCTCTGTCCTGCAAGATGGCTGCAGAGTTCGATGCCTTCTTGGTCAGTGGCCTCAGGTGGTTCTGCCAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS-3UTR CAA 90 bp | GAAGATGGGGTCTTGGGCTGGGAATGTATTCCAGAAACCCTTCTATTGGCTTTGCATCTTCAAAGCCAGTaGGCGGTTGATGCAGAAACC | + |
|
Preference number: 5 (lower is better) Translates to: EDGVLGWECIPETLLLALHLQSQ*AVDAET Trigger: GGTTTCTGCATCAACCGCCAACTGGCTTTGAAGATG...CAAAGCCAATAGAAGGGTTTCTGGAATACATTCCCAGCCCAAGACCCCATCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | TCGCCTAGCTGCAGCTCCAGGGGTCCTGGGTTCCGTTaGTTCAGCCTGAGCGCGCCCTGTATCATCCTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SPSCSSRGPGFR*FSLSAPCIILW Trigger: CCAGAGGATGATACAGGGCGCGCTCAGGCTGAACCAACGGAACCCAGGACCCCTGGAGCTGCAGCTAGGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | ACTGCAGCTCAGAGGCGTGGATGGGCCGGTTCAGGCTaGGCTTGCCCACATAGACATCACGGTCCTGCGGGA | + |
|
Preference number: 6 (lower is better) Translates to: TAAQRRGWAGSG*ACPHRHHGPAG Trigger: TCCCGCAGGACCGTGATGTCTATGTGGGCAAGCCCAGCCTGAACCGGCCCATCCACGCCTCTGAGCTGCAGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CAA 72 bp | GGAGCCGCTGGCCCATGGCACCATCTTCAAAGCCAGTaGGCGGTTGATGCAGAAACCAGCACCCCCTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: GAAGPWHHLQSQ*AVDAETSTPCG Trigger: GCCACAGGGGGTGCTGGTTTCTGCATCAACCGCCAACTGGCTTTGAAGATGGTGCCATGGGCCAGCGGCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS TCA 72 bp | GCAGCTCCAGGGGTCCTGGGTTCCGTTGGTTCAGCCTaGGCGCGCCCTGTATCATCCTCTGGGACAAACTTG | + |
|
Preference number: 6 (lower is better) Translates to: AAPGVLGSVGSA*ARPVSSSGTNL Trigger: CAAGTTTGTCCCAGAGGATGATACAGGGCGCGCTCAGGCTGAACCAACGGAACCCAGGACCCCTGGAGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | GAGCCGCTGGCCCATGGCACCATCTTCAAAGCCAGTTaGCGGTTGATGCAGAAACCAGCACCCCCTGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: EPLAHGTIFKAS*RLMQKPAPPVA Trigger: TGCCACAGGGGGTGCTGGTTTCTGCATCAACCGCCAACTGGCTTTGAAGATGGTGCCATGGGCCAGCGGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | TCGGGGAGCCGGATGAGAGCAGAAGTGTCCACAAAGTaGGAGCCGCTGGCCCATGGCACCATCTTCAAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SGSRMRAEVSTK*EPLAHGTIFKA Trigger: GGCTTTGAAGATGGTGCCATGGGCCAGCGGCTCCCACTTTGTGGACACTTCTGCTCTCATCCGGCTCCCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | ACCCACGTGTCTAGTAGCAGGTCCAGGCGGGAGCGATaGAAGGCCCAGGTAGTCTTGACTGCGATGAAGATG | + |
|
Preference number: 6 (lower is better) Translates to: THVSSSRSRRER*KAQVVLTAMKM Trigger: CATCTTCATCGCAGTCAAGACTACCTGGGCCTTCCATCGCTCCCGCCTGGACCTGCTACTAGACACGTGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CAA 72 bp | TGGCAAACCAGAACCGCACCAGCTTCGTGCGGTTTTTaGACTGCAGCTCAGAGGCGTGGATGGGCCGGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: WQTRTAPASCGF*TAAQRRGWAGS Trigger: TGAACCGGCCCATCCACGCCTCTGAGCTGCAGTCAAAAAACCGCACGAAGCTGGTGCGGTTCTGGTTTGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS GCA 72 bp | CCACCTGAGGCCACTGACCAAGAAGGCATCGAACTCTaGAGCCATCTTGCAGGACAGAGCAGGATGACTGTG | + |
|
Preference number: 6 (lower is better) Translates to: PPEATDQEGIEL*SHLAGQSRMTV Trigger: CACAGTCATCCTGCTCTGTCCTGCAAGATGGCTGCAGAGTTCGATGCCTTCTTGGTCAGTGGCCTCAGGTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | CAGTTGGTGACCACGAGGTGCGGGCCTAGTCTCTCCTaGAGGCGTTCATCTGGGCTGTCAGTGAAGATGAAT | + |
|
Preference number: 6 (lower is better) Translates to: QLVTTRCGPSLS*RRSSGLSVKMN Trigger: ATTCATCTTCACTGACAGCCCAGATGAACGCCTCCAGGAGAGACTAGGCCCGCACCTCGTGGTCACCAACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | AGCAGAAGTGTCCACAAAGTGGGAGCCGCTGGCCCATaGCACCATCTTCAAAGCCAGTTGGCGGTTGATGCA | + |
|
Preference number: 6 (lower is better) Translates to: SRSVHKVGAAGP*HHLQSQLAVDA Trigger: TGCATCAACCGCCAACTGGCTTTGAAGATGGTGCCATGGGCCAGCGGCTCCCACTTTGTGGACACTTCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||
| CDS CCA 72 bp | CAATGGAGGGAGCGGAATCTGGAGGGGTCCTCTTCATaGGAGAAGGGGCCCGGTAGCTTGATGACATTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: QWRERNLEGSSS*EKGPGSLMTFS Trigger: ACTGAATGTCATCAAGCTACCGGGCCCCTTCTCCCATGAAGAGGACCCCTCCAGATTCCGCTCCCTCCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018313.6 |
||