Pregenerated sensors for MFAP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030116Ensembl transcript IDs: ENSMUST00000032210.14, ENSMUST00000118626.8, ENSMUST00000121656.2, ENSMUST00000142896.8, ENSMUST00000148517.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTCTGGAACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATaGTGGCTGGGAACTGAACCCAGGTCCTCTGGAAGAACATCCAGT | + |
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Preference number: 1 (lower is better) Translates to: SSGTRLMGDCEPPCG*WLGTEPRSSGRTSS Trigger: ACTGGATGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGTTCCAGAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR CCA 90 bp | TCTGGAACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATGCTaGCTGGGAACTGAACCCAGGTCCTCTGGAAGAACATCCAGTGTT | + |
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Preference number: 1 (lower is better) Translates to: SGTRLMGDCEPPCGC*LGTEPRSSGRTSSV Trigger: AACACTGGATGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGTTCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR CCA 90 bp | GAACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATGCTGGCTaGGAACTGAACCCAGGTCCTCTGGAAGAACATCCAGTGTTCTTA | + |
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Preference number: 1 (lower is better) Translates to: ELDLWVIVSHHVDAG*ELNPGPLEEHPVFL Trigger: TAAGAACACTGGATGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR TCA 90 bp | CCTAGGAAACTTCTAGAAGGAAGCTCTGTGGCTCGAGCCTCTGGCAAGCTCCTGAAGTTTTCTGCCAACTaGGCCACGCACCCCAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: PRKLLEGSSVARASGKLLKFSAN*ATHPSP Trigger: GGGGCTGGGGTGCGTGGCTCAGTTGGCAGAAAACTT...CAGGAGCTTGCCAGAGGCTCGAGCCACAGAGCTTCCTTCTAGAAGTTTCCTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | TACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCATGTCTACGGGACAGATaGCAGGGGTTGGAGGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: YGTDGRGWRRKNFRFLHPCLRDR*QGLEEK Trigger: TTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACA...TGGATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | TGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATGTCTACGGGACAGATaGCAGGGGTTGGAGGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: CLRDRWQGLEEKEFSIPSCLRDR*QGLEEK Trigger: TTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACA...TGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| 3UTR CAA 90 bp | CCTCTGGAAGAACATCCAGTGTTCTTAACCATTGAGCCATCTCTCTaGCCTCACCCACAACCTTCCCATCATGAAGACTTGCTGGGCAAA | + |
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Preference number: 2 (lower is better) Translates to: PLEEHPVFLTIEPSL*PHPQPSHHEDLLGK Trigger: TTTGCCCAGCAAGTCTTCATGATGGGAAGGTTGTGGGTGAGGCAAGAGAGATGGCTCAATGGTTAAGAACACTGGATGTTCTTCCAGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | CTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCACAGATGGCAGGGGTTaGAGGAGAAAGAATTTTCGA | + |
|
Preference number: 2 (lower is better) Translates to: LRDRWQGLEEKEFSIPSSTDGRG*RRKNFR Trigger: TCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGT...GGATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGGATGCTGGCTGGGAACTGAACCCAGGTCCTCTGGAAGAACATCCAGTGTTATCATGAAGACTTGCTaGGCAAAATTTAGGACAAGC | + |
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Preference number: 2 (lower is better) Translates to: CGCWLGTEPRSSGRTSSVIMKTC*AKFRTS Trigger: GCTTGTCCTAAATTTTGCCCAGCAAGTCTTCATGAT...AACACTGGATGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR GCA 90 bp | GTTTTCCACATGTATGTCTGTGTGACATATGCATGCAGTGCCCATGGATGCCAGAGGAAGCCGGGGCATTaGAAAGGGCTTAGTTTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: VFHMYVCVTYACSAHGCQRKPGH*KGLSLK Trigger: TTTTAAACTAAGCCCTTTGCAATGCCCCGGCTTCCT...CTGGCATCCATGGGCACTGCATGCATATGTCACACAGACATACATGTGGAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | TGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCAACAGATGGCAGGGGTTaGAGGAGAAAGAATTTTCGA | + |
|
Preference number: 2 (lower is better) Translates to: CLRDRWQGLEEKEFSIPSTDGRG*RRKNFR Trigger: TCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGT...TGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTCTGGAACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATGCTGGCTGAGGATATGTAAACAATaGGGAGTTAACCTAGGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: SSGTRLMGDCEPPCGCWLRICKQ*GVNLGN Trigger: GTTTCCTAGGTTAACTCCTCATTGTTTACATATCCT...CAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGTTCCAGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTCTGTGGCTCGAGCCTCTGGCAAGCTCCTGTCTCTGGCATATTTAATAATTTTATATACGAGGCTCTaGGATCAATTCATAGCACCA | + |
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Preference number: 2 (lower is better) Translates to: SSVARASGKLLSLAYLIILYTRL*DQFIAP Trigger: TGGTGCTATGAATTGATCTCAGAGCCTCGTATATAA...AATTATTAAATATGCCAGAGACAGGAGCTTGCCAGAGGCTCGAGCCACAGAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGCAAACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCAAAATGAGAGGAAGCCGGGGCATTaGAAAGGGCTTAGTTTAAAA | + |
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Preference number: 2 (lower is better) Translates to: SANPCHNIDNVLSVPQNERKPGH*KGLSLK Trigger: TTTTAAACTAAGCCCTTTGCAATGCCCCGGCTTCCT...CTCATTTTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATCAGCAAACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCAAAAACAGATGGCAGGGGTTaGAGGAGAAAGAATTTTCGA | + |
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Preference number: 2 (lower is better) Translates to: EISKPVPQYRQCIVSTAKTDGRG*RRKNFR Trigger: TCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGT...TTTTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGATTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| 3UTR GCA 72 bp | ACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATaGTGGCTGGGAACTGAACCCAGGTCCTCTGGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: TRLMGDCEPPCG*WLGTEPRSSGR Trigger: TCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR CCA 72 bp | TTATGGGTGATTGTGAGCCACCATGTGGATGCTGGCTaGGAACTGAACCCAGGTCCTCTGGAAGAACATCCA | + |
|
Preference number: 3 (lower is better) Translates to: LWVIVSHHVDAG*ELNPGPLEEHP Trigger: TGGATGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR CCA 72 bp | AGACTTATGGGTGATTGTGAGCCACCATGTGGATGCTaGCTGGGAACTGAACCCAGGTCCTCTGGAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: RLMGDCEPPCGC*LGTEPRSSGRT Trigger: TGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR TCA 72 bp | GCCATCTCTCTTGCCTCACCCACAACCTTCCCATCATaGAGACTTGCTGGGCAAAATTTAGGACAAGCCACG | + |
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Preference number: 3 (lower is better) Translates to: AISLASPTTFPS*RLAGQNLGQAT Trigger: CGTGGCTTGTCCTAAATTTTGCCCAGCAAGTCTTCATGATGGGAAGGTTGTGGGTGAGGCAAGAGAGATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR TCA 72 bp | AGGTCCTCTGGAAGAACATCCAGTGTTCTTAACCATTaGGCCATCTCTCTTGCCTCACCCACAACCTTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: RSSGRTSSVLNH*AISLASPTTFP Trigger: TGGGAAGGTTGTGGGTGAGGCAAGAGAGATGGCTCAATGGTTAAGAACACTGGATGTTCTTCCAGAGGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR GCA 72 bp | TCTTGCCTCACCCACAACCTTCCCATCATGAAGACTTaGTGGGCAAAATTTAGGACAAGCCACGAAGCATGG | + |
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Preference number: 3 (lower is better) Translates to: SCLTHNLPIMKT*WAKFRTSHEAW Trigger: CCATGCTTCGTGGCTTGTCCTAAATTTTGCCCAGCAAGTCTTCATGATGGGAAGGTTGTGGGTGAGGCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR TCA 72 bp | CCCCAGCCCCTTTCTACTGCAGGAGCTGAATGTAGCTaGATGTATCTAAGTCAAGTGGCCATCCTTTATCCA | + |
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Preference number: 3 (lower is better) Translates to: PQPLSTAGAECS*MYLSQVAILYP Trigger: TGGATAAAGGATGGCCACTTGACTTAGATACATTCAGCTACATTCAGCTCCTGCAGTAGAAAGGGGCTGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| 3UTR GCA 72 bp | TTTCCACATGTATGTCTGTGTGACATATGCATGCAGTaGCCATGGATGCCAGAAAATATCTCAGGTCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: FPHVCLCDICMQ*PWMPENISGPL Trigger: CAGAGGACCTGAGATATTTTCTGGCATCCATGGGCACTGCATGCATATGTCACACAGACATACATGTGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR GCA 72 bp | CCATCTTGTCTACAACACCAGAAATCAGCAAACCCGTaGCACAATATAGACAATGTATTGTCAGTACCGCAA | + |
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Preference number: 3 (lower is better) Translates to: PSCLQHQKSANP*HNIDNVLSVPQ Trigger: TTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGATTTCTGGTGTTGTAGACAAGATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | TCCTCTGGAACTAGACTTATGGGTGATTGTGAGCCACCATGTGGATGCTGGCTGAGAGGGGATGCTGATTaGCAAGACAAGCAGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SSGTRLMGDCEPPCGCWLRGDAD*QDKQQG Trigger: GCCTTGCTGCTTGTCTTGGCAATCAGCATCCCCTCT...CAGCCAGCATCCACATGGTGGCTCACAATCACCCATAAGTCTAGTTCCAGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | CGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCACAAGAGGGGATGCTGATTaGCAAGACAAGCAGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: RDRWQGLEEKEFSIPSSTRGDAD*QDKQQG Trigger: GCCTTGCTGCTTGTCTTGGCAATCAGCATCCCCTCT...TGTGGATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | CACAGACCATCGGGTCTCTGCAAATTCATATTTTCACAGGGAGGAAGTCGGAAGGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: HRPSGLCKFIFSQGGSRKVKQDW*THCLTG Trigger: GCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCAC...CTTCCGACTTCCTCCCTGTGAAAATATGAATTTGCAGAGACCCGATGGTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121656.2 |
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| CDS-3UTR GCA 90 bp | GTGTTCTTAACCATTGAGCCATCTCTCTTGCCTCACCCACAACCTTCCCATCATGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: VFLTIEPSLLPHPQPSHHVKQDW*THCLTG Trigger: GCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCAC...ATGATGGGAAGGTTGTGGGTGAGGCAAGAGAGATGGCTCAATGGTTAAGAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| CDS-3UTR CCA 90 bp | TACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCAGAAGTCGGAAGTAGTTaGAGCGCCGAAGTCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: YGTDGRGWRRKNFRFLHPEVGSS*SAEVAL Trigger: CAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTC...TGGATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS-3UTR CCA 90 bp | AGCTCTGTGGCTCGAGCCTCTGGCAAGCTCCTGTCTCTGGCATATTTAATAATTGAAGTCGGAAGTAGTTaGAGCGCCGAAGTCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SSVARASGKLLSLAYLIIEVGSS*SAEVAL Trigger: CAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTC...AATTATTAAATATGCCAGAGACAGGAGCTTGCCAGAGGCTCGAGCCACAGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | TGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCAAGAGGGGATGCTGATTaGCAAGACAAGCAGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: CLRDRWQGLEEKEFSIPSRGDAD*QDKQQG Trigger: GCCTTGCTGCTTGTCTTGGCAATCAGCATCCCCTCT...TGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| CDS-3UTR TCA 90 bp | TCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCATCTGTGGAAGGTGTaGTATCAGCCAGAGCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: STGQMAGVGGERIFDSFIHLWKV*YQPELY Trigger: ATACAGCTCTGGCTGATATCACACCTTCCACAGATG...GATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS-3UTR TCA 90 bp | ATACATGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCATCTGTGGAAGGTGTaGTATCAGCCAGAGCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: IHVYGTDGRGWRRKNFRFHLWKV*YQPELY Trigger: ATACAGCTCTGGCTGATATCACACCTTCCACAGATG...GAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACATGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | AGTTTAAAAATACATGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATAGAGGGGATGCTGATTaGCAAGACAAGCAGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SLKIHVYGTDGRGWRRKNRGDAD*QDKQQG Trigger: GCCTTGCTGCTTGTCTTGGCAATCAGCATCCCCTCT...ATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACATGTATTTTTAAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | CCAGAAATCAGCAAACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCACTCATCCCGGCACTCTaGAGTAGCATTTTTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: PEISKPVPQYRQCIVSTALIPAL*SSIFVT Trigger: GGTGACAAAAATGCTACTGCAGAGTGCCGGGATGAG...TGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGATTTCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | AACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCAAAATGAGACAAACGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: NPCHNIDNVLSVPQNETNVKQDW*THCLTG Trigger: GCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCAC...GTTTGTCTCATTTTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAATACATGTCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: LKIHVYGTDGRGWRRKNFVKQDW*THCLTG Trigger: GCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCAC...AAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGACATGTATTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000148517.8 |
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| CDS-3UTR CCA 90 bp | GAAATCAGCAAACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCAAAAGAAGTCGGAAGTAGTTaGAGCGCCGAAGTCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: EISKPVPQYRQCIVSTAKEVGSS*SAEVAL Trigger: CAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTC...TTTTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| 3UTR CAA 72 bp | GAACATCCAGTGTTCTTAACCATTGAGCCATCTCTCTaGCCTCACCCACAACCTTCCCATCATGAAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: EHPVFLTIEPSL*PHPQPSHHEDL Trigger: CAAGTCTTCATGATGGGAAGGTTGTGGGTGAGGCAAGAGAGATGGCTCAATGGTTAAGAACACTGGATGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | TCTACGGGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCAGACCATCGGGTCTCTaGAAATTCATATTTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: STGQMAGVGGERIFDSFIRPSGL*KFIFSQ Trigger: CTGTGAAAATATGAATTTGCAGAGACCCGATGGTCT...GATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCCCGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | GTTTTCCACATGTATGTCTGTGTGACATATGCATGCAGTGCCCATGGATGCCAGAGACCATCGGGTCTCTaGAAATTCATATTTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: VFHMYVCVTYACSAHGCQRPSGL*KFIFSQ Trigger: CTGTGAAAATATGAATTTGCAGAGACCCGATGGTCT...CTGGCATCCATGGGCACTGCATGCATATGTCACACAGACATACATGTGGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148517.8 |
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| 3UTR CAA 72 bp | AATGTATCTAAGTCAAGTGGCCATCCTTTATCCATCTaGTCTACAACACCAGAAATCAGCAAACCCGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: NVSKSSGHPLSI*STTPEISKPVP Trigger: TGGCACGGGTTTGCTGATTTCTGGTGTTGTAGACAAGATGGATAAAGGATGGCCACTTGACTTAGATACATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| CDS-3UTR GCA 90 bp | GAAATCAGCAAACCCGTGCCACAATATAGACAATGTATTGTCAGTACCGCAAAAAGACCATCGGGTCTCTaGAAATTCATATTTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: EISKPVPQYRQCIVSTAKRPSGL*KFIFSQ Trigger: CTGTGAAAATATGAATTTGCAGAGACCCGATGGTCT...TTTTGCGGTACTGACAATACATTGTCTATATTGTGGCACGGGTTTGCTGATTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032210.14 ENSMUST00000148517.8 |
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| CDS CCA 90 bp | TTCACAGGGAGGAAGTCGGAAGTAGTTGGAGCGCCGAAGTCGCCTTaGAGGCAGGCCTGCCATCTGCCGGCAAAGCTCATCTTTCATAGC | + |
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Preference number: 5 (lower is better) Translates to: FTGRKSEVVGAPKSP*RQACHLPAKLIFHS Trigger: GCTATGAAAGATGAGCTTTGCCGGCAGATGGCAGGCCTGCCTCCAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTCCTCCCTGTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS CCA 90 bp | CATCTGGTGAAGCAGGACTGGTGCACACACTGTCTGACTGGCCGATaGACAGAGTACAGTCTTGTACAAGCAAACTTCTCATCCCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: HLVKQDWCTHCLTGR*TEYSLVQANFSSRH Trigger: GTGCCGGGATGAGAAGTTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121656.2 |
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| CDS CCA 90 bp | AAACTGGTGAAGCAGGACTGGTGCACACACTGTCTGACTGGCCGATaGACAGAGTACAGTCTTGTACAAGCAAACTTCTCATCCCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: KLVKQDWCTHCLTGR*TEYSLVQANFSSRH Trigger: GTGCCGGGATGAGAAGTTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS GCA 90 bp | TTATTGATGATGTACATGCGCCGTAAACTGGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGCCGATGGACAGAGTACAGTCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: LLMMYMRRKLVKQDW*THCLTGRWTEYSLV Trigger: TACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGTTTACGGCGCATGTACATCATCAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CCA 90 bp | TCATTATTGATGATGTACATGCGCCGTAAACTGGTGAAGCAGGACTaGTGCACACACTGTCTGACTGGCCGATGGACAGAGTACAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SLLMMYMRRKLVKQD*CTHCLTGRWTEYSL Trigger: AAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGTTTACGGCGCATGTACATCATCAATAATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS-3UTR CAA 90 bp | GGACAGATGGCAGGGGTTGGAGGAGAAAGAATTTTCGATTCCTTCATCCACATTTCTGCAGTAGCATTTTaGTCACCAGCTGTATCGTCT | + |
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Preference number: 5 (lower is better) Translates to: GQMAGVGGERIFDSFIHISAVAF*SPAVSS Trigger: AGACGATACAGCTGGTGACAAAAATGCTACTGCAGA...AATGTGGATGAAGGAATCGAAAATTCTTTCTCCTCCAACCCCTGCCATCTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032210.14 |
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| CDS CCA 72 bp | AGGAAGTCGGAAGTAGTTGGAGCGCCGAAGTCGCCTTaGAGGCAGGCCTGCCATCTGCCGGCAAAGCTCATC | + |
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Preference number: 6 (lower is better) Translates to: RKSEVVGAPKSP*RQACHLPAKLI Trigger: GATGAGCTTTGCCGGCAGATGGCAGGCCTGCCTCCAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS CAA 72 bp | GAGGAAGTCGGAAGTAGTTGGAGCGCCGAAGTCGCCTaGGAGGCAGGCCTGCCATCTGCCGGCAAAGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: EEVGSSWSAEVA*EAGLPSAGKAH Trigger: ATGAGCTTTGCCGGCAGATGGCAGGCCTGCCTCCAAGGCGACTTCGGCGCTCCAACTACTTCCGACTTCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS TCA 72 bp | TCGTCTGTGAATGTCTCAGGCACATCATCTCCGCGTTaGCCACTGACCCCTAGGGGTAGCCAGTCAGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: SSVNVSGTSSPR*PLTPRGSQSEG Trigger: CCCCTCTGACTGGCTACCCCTAGGGGTCAGTGGTCAACGCGGAGATGATGTGCCTGAGACATTCACAGACGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000148517.8 |
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| CDS GCA 72 bp | ATGTACATGCGCCGTAAACTGGTGAAGCAGGACTGGTaGACACACTGTCTGACTGGCCGATGGACAGAGTAC | + |
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Preference number: 6 (lower is better) Translates to: MYMRRKLVKQDW*THCLTGRWTEY Trigger: GTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGTTTACGGCGCATGTACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CCA 72 bp | ATGATGTACATGCGCCGTAAACTGGTGAAGCAGGACTaGTGCACACACTGTCTGACTGGCCGATGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: MMYMRRKLVKQD*CTHCLTGRWTE Trigger: CTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGTTTACGGCGCATGTACATCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CCA 72 bp | ACTGGTGAAGCAGGACTGGTGCACACACTGTCTGACTaGCCGATGGACAGAGTACAGTCTTGTACAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: TGEAGLVHTLSD*PMDRVQSCTSK Trigger: TTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CCA 72 bp | TCTGGTGAAGCAGGACTGGTGCACACACTGTCTGACTaGCCGATGGACAGAGTACAGTCTTGTACAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: SGEAGLVHTLSD*PMDRVQSCTSK Trigger: TTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTTCACCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121656.2 |
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| CDS CCA 72 bp | AAGCAGGACTGGTGCACACACTGTCTGACTGGCCGATaGACAGAGTACAGTCTTGTACAAGCAAACTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: KQDWCTHCLTGR*TEYSLVQANFS Trigger: TGAGAAGTTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGACAGTGTGTGCACCAGTCCTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000032210.14 ENSMUST00000118626.8 ENSMUST00000121656.2 ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CAA 72 bp | GCAAACTTCTCATCCCGGCACTCTGCAGTAGCATTTTaGTCACCAGCTAGGTCATCTGTGGAAGGTGTGATA | + |
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Preference number: 6 (lower is better) Translates to: ANFSSRHSAVAF*SPARSSVEGVI Trigger: TATCACACCTTCCACAGATGACCTAGCTGGTGACAAAAATGCTACTGCAGAGTGCCGGGATGAGAAGTTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000142896.8 ENSMUST00000148517.8 |
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| CDS CAA 90 bp | CTTGTACAAGCAAACTTCTCATCCCGGCACTCTGCAGTAGCATTTTaGTCACCAGCTAGGTCATCTGTGGAAGGTGTGATATCAGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: LVQANFSSRHSAVAF*SPARSSVEGVISAR Trigger: TCTGGCTGATATCACACCTTCCACAGATGACCTAGCTGGTGACAAAAATGCTACTGCAGAGTGCCGGGATGAGAAGTTTGCTTGTACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000142896.8 ENSMUST00000148517.8 |
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