RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MFAP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042436

Ensembl transcript IDs: ENSMUST00000040522.7, ENSMUST00000064783.10

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCCAGGCTAGGATGGCTCAGCCACAGAAAGGCCTGGAGGGCTGCTaGCAGCCTAGCCTCAGGTGGAATGCATCAGGGCGTGGCTGTATG +
Preference number: 1 (lower is better)
Translates to: IQARMAQPQKGLEGC*QPSLRWNASGRGCM
Trigger: CATACAGCCACGCCCTGATGCATTCCACCTGAGGCTAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCTAGCCTGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 90 bp GGGCGTGGCTGTATGTGGGACAGGGATTTGCCAGGGCATGGCTGGTaGTCAGGAATTGTGGGTAAAGCGTGGAGGGAGAACATGGACCCT +
Preference number: 1 (lower is better)
Translates to: GRGCMWDRDLPGHGW*SGIVGKAWRENMDP
Trigger: AGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCCACGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 90 bp ATTTCAGCCAGATCCAGGCTAGGATGGCTCAGCCACAGAAAGGCCTaGAGGGCTGCTGACAGCCTAGCCTCAGGTGGAATGCATCAGGGC +
Preference number: 1 (lower is better)
Translates to: ISARSRLGWLSHRKA*RAADSLASGGMHQG
Trigger: GCCCTGATGCATTCCACCTGAGGCTAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCTAGCCTGGATCTGGCTGAAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 90 bp ATGGCTGGTGCTCAGGAATTGTGGGTAAAGCGTGGAGGGAGAACATaGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCA +
Preference number: 1 (lower is better)
Translates to: MAGAQELWVKRGGRT*TLGTSGERWGLLGP
Trigger: TGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 90 bp TCAGGGCGTGGCTGTATGTGGGACAGGGATTTGCCAGGGCATGGCTaGTGCTCAGGAATTGTGGGTAAAGCGTGGAGGGAGAACATGGAC +
Preference number: 1 (lower is better)
Translates to: SGRGCMWDRDLPGHG*CSGIVGKAWRENMD
Trigger: GTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCCACGCCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 90 bp GAGAGCTATGTGAGTGCTGGGGTGTGGCAGTGTGCAAGAGCTGATTaGCAATGCCACAGGTGCTGCATGACTCTGTCGAGGGTAGCCCCA +
Preference number: 1 (lower is better)
Translates to: ESYVSAGVWQCARAD*QCHRCCMTLSRVAP
Trigger: TGGGGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGCACTCACATAGCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 90 bp TATGTGAGTGCTGGGGTGTGGCAGTGTGCAAGAGCTGATTGGCAATaGCACAGGTGCTGCATGACTCTGTCGAGGGTAGCCCCAAACAGA +
Preference number: 1 (lower is better)
Translates to: YVSAGVWQCARADWQ*HRCCMTLSRVAPNR
Trigger: TCTGTTTGGGGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGCACTCACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 90 bp ACACACCAACAATGGTACAGTGAGGAAGAGCCAGGTGCTCATATTTaGAGCCAAGTAAATGTCTGTCCACAAAGCCAGTCCATCAGATCC +
Preference number: 1 (lower is better)
Translates to: THQQWYSEEEPGAHI*SQVNVCPQSQSIRS
Trigger: GGATCTGATGGACTGGCTTTGTGGACAGACATTTACTTGGCTCCAAATATGAGCACCTGGCTCTTCCTCACTGTACCATTGTTGGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR-3UTR CCA 90 bp CCCACCCACTTCCAGCCCCACATATTGATCCCTGCTGCCTCTCATGACGATCGCAGCCACAGAAAGGCCTaGAGGGCTGCTGACAGCCTA +
Preference number: 2 (lower is better)
Translates to: PTHFQPHILIPAASHDDRSHRKA*RAADSL
Trigger: TAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCT...GCGATCGTCATGAGAGGCAGCAGGGATCAATATGTGGGGCTGGAAGTGGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CAA 90 bp GTATGTGGGACAGGGATTTGCCAGGGCATGGCTGGTGCTCAGGAATaGTGGGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCA +
Preference number: 2 (lower is better)
Translates to: VCGTGICQGMAGAQE*WVKRGGRTWTLGTS
Trigger: TGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR TCA 72 bp AGGATGGCTCAGCCACAGAAAGGCCTGGAGGGCTGCTaGCAGCCTAGCCTCAGGTGGAATGCATCAGGGCGT +
Preference number: 3 (lower is better)
Translates to: RMAQPQKGLEGC*QPSLRWNASGR
Trigger: ACGCCCTGATGCATTCCACCTGAGGCTAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp GCTGGGGTGTGGCAGTGTGCAAGAGCTGATTGGCAATaGCACAGGTGCTGCATGACTCTGTCGAGGGTAGCC +
Preference number: 3 (lower is better)
Translates to: AGVWQCARADWQ*HRCCMTLSRVA
Trigger: GGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp AGATCCAGGCTAGGATGGCTCAGCCACAGAAAGGCCTaGAGGGCTGCTGACAGCCTAGCCTCAGGTGGAATG +
Preference number: 3 (lower is better)
Translates to: RSRLGWLSHRKA*RAADSLASGGM
Trigger: CATTCCACCTGAGGCTAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCTAGCCTGGATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp ATTGTGGGTAAAGCGTGGAGGGAGAACATGGACCCTTaGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCC +
Preference number: 3 (lower is better)
Translates to: IVGKAWRENMDP*DFRGKMGPAWA
Trigger: GGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp GGGCATGGCTGGTGCTCAGGAATTGTGGGTAAAGCGTaGAGGGAGAACATGGACCCTTGGGACTTCAGGGGA +
Preference number: 3 (lower is better)
Translates to: GHGWCSGIVGKA*RENMDPWDFRG
Trigger: TCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp GGGATTTGCCAGGGCATGGCTGGTGCTCAGGAATTGTaGGTAAAGCGTGGAGGGAGAACATGGACCCTTGGG +
Preference number: 3 (lower is better)
Translates to: GICQGMAGAQEL*VKRGGRTWTLG
Trigger: CCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp GGCTGTATGTGGGACAGGGATTTGCCAGGGCATGGCTaGTGCTCAGGAATTGTGGGTAAAGCGTGGAGGGAG +
Preference number: 3 (lower is better)
Translates to: GCMWDRDLPGHG*CSGIVGKAWRE
Trigger: CTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp GTGAGTGCTGGGGTGTGGCAGTGTGCAAGAGCTGATTaGCAATGCCACAGGTGCTGCATGACTCTGTCGAGG +
Preference number: 3 (lower is better)
Translates to: VSAGVWQCARAD*QCHRCCMTLSR
Trigger: CCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGCACTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp ATGCATCAGGGCGTGGCTGTATGTGGGACAGGGATTTaGCAGGGCATGGCTGGTGCTCAGGAATTGTGGGTA +
Preference number: 3 (lower is better)
Translates to: MHQGVAVCGTGI*QGMAGAQELWV
Trigger: TACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCCACGCCCTGATGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp GCTCAGGAATTGTGGGTAAAGCGTGGAGGGAGAACATaGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTG +
Preference number: 3 (lower is better)
Translates to: AQELWVKRGGRT*TLGTSGERWGL
Trigger: CAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR TCA 72 bp CTTCCAGCCCCACATATTGATCCCTGCTGCCTCTCATaGCGATCGCTAGGGCAAGTAGGGGACCAAGTCAAC +
Preference number: 3 (lower is better)
Translates to: LPAPHIDPCCLS*RSLGQVGDQVN
Trigger: GTTGACTTGGTCCCCTACTTGCCCTAGCGATCGTCATGAGAGGCAGCAGGGATCAATATGTGGGGCTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp TGTATGTGGGACAGGGATTTGCCAGGGCATGGCTGGTaGTCAGGAATTGTGGGTAAAGCGTGGAGGGAGAAC +
Preference number: 3 (lower is better)
Translates to: CMWDRDLPGHGW*SGIVGKAWREN
Trigger: GTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp CAGTGTGCAAGAGCTGATTGGCAATGCCACAGGTGCTaGATGACTCTGTCGAGGGTAGCCCCAAACAGAAGG +
Preference number: 3 (lower is better)
Translates to: QCARADWQCHRC*MTLSRVAPNRR
Trigger: CCTTCTGTTTGGGGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp TGGCAGTGTGCAAGAGCTGATTGGCAATGCCACAGGTaGTGCATGACTCTGTCGAGGGTAGCCCCAAACAGA +
Preference number: 3 (lower is better)
Translates to: WQCARADWQCHR*CMTLSRVAPNR
Trigger: TCTGTTTGGGGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR GCA 72 bp AGAAGGCTCTGCAGTAAGGAAACTGCTGAGGTGGGGTaGAAAAGCTGGCAGCTAGAAGGTAGCTTCTGGCTT +
Preference number: 3 (lower is better)
Translates to: RRLCSKETAEVG*KSWQLEGSFWL
Trigger: AAGCCAGAAGCTACCTTCTAGCTGCCAGCTTTTGCACCCCACCTCAGCAGTTTCCTTACTGCAGAGCCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp TGCAGTAAGGAAACTGCTGAGGTGGGGTGCAAAAGCTaGCAGCTAGAAGGTAGCTTCTGGCTTTCAGCTGTC +
Preference number: 3 (lower is better)
Translates to: CSKETAEVGCKS*QLEGSFWLSAV
Trigger: GACAGCTGAAAGCCAGAAGCTACCTTCTAGCTGCCAGCTTTTGCACCCCACCTCAGCAGTTTCCTTACTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CCA 72 bp AAGTATTCTGAGGAGAGCTATGTGAGTGCTGGGGTGTaGCAGTGTGCAAGAGCTGATTGGCAATGCCACAGG +
Preference number: 3 (lower is better)
Translates to: KYSEESYVSAGV*QCARADWQCHR
Trigger: CCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGCACTCACATAGCTCTCCTCAGAATACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR TCA 72 bp TTTGGGGTTGGGGTAAACACACCAACAATGGTACAGTaGGGAAGAGCCAGGTGCTCATATTTGGAGCCAAGT +
Preference number: 3 (lower is better)
Translates to: FGVGVNTPTMVQ*GRARCSYLEPS
Trigger: ACTTGGCTCCAAATATGAGCACCTGGCTCTTCCTCACTGTACCATTGTTGGTGTGTTTACCCCAACCCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR-3UTR CAA 90 bp TTTGCCATCAAAATGAGGCCTGTGAAATACAAGGTTTTCTTTAACCTGACTCTGATGTGGGACAGGGATTaGCCAGGGCATGGCTGGTGC +
Preference number: 3 (lower is better)
Translates to: FAIKMRPVKYKVFFNLTLMWDRD*PGHGWC
Trigger: GCACCAGCCATGCCCTGGCAAATCCCTGTCCCACAT...CAGAGTCAGGTTAAAGAAAACCTTGTATTTCACAGGCCTCATTTTGATGGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp AGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCCCTAGGGACGGGTaGCAGCCGGTCAGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: RENMDPWDFRGKMGPAWASPRDG*QPVSRD
Trigger: GTCTCTGCTGACCGGCTGCCACCCGTCCCTAGGGCT...GGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS-3UTR GCA 90 bp AGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGGAGGTGCAGGTTCTaGAGCCCTAGGGACGGGTGG +
Preference number: 4 (lower is better)
Translates to: RENMDPWDFRGKMGPAWARRCRF*SPRDGW
Trigger: CCACCCGTCCCTAGGGCTGCAGAACCTGCACCTCCT...GGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS-3UTR CCA 90 bp GGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCGGTCAGCAGAGACTTaGCTGAGGGGCAGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: GKAWRENMDPWDFRGKMGRSAET*LRGSPH
Trigger: GTGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCG...CCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS-3UTR TCA 90 bp GGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCAGTCCAGGGGTTGCTaGAGACAGGACTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: GEHGPLGLQGKDGACLGQQSRGC*RQDFSR
Trigger: TCTGGAGAAGTCCTGTCTTCAGCAACCCCTGGACTG...CTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp TCAGCCAGATCCAGGCTAGGATGGCTCAGCCACAGAAAGGCCTGGAGGGCTGCTCAGTCCAGGGGTTGCTaGAGACAGGACTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: SARSRLGWLSHRKAWRAAQSRGC*RQDFSR
Trigger: TCTGGAGAAGTCCTGTCTTCAGCAACCCCTGGACTG...AGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCTAGCCTGGATCTGGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp GGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGGGCCATAGGGGTAGATaGGATACACGCCGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: GEHGPLGLQGKDGACLGQGHRGR*DTRRLP
Trigger: AGGAAGACGGCGTGTATCTCATCTACCCCTATGGCC...CTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp CGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGAACCAGAAGGCTCCTaGGGAGAGGGCTGCACAGTT +
Preference number: 4 (lower is better)
Translates to: RGGRTWTLGTSGERWGLLEPEGS*GEGCTV
Trigger: AACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTC...AAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCCCGGTCCCGATCAAAGGTaGAGAACTTCTGGCCACTGT +
Preference number: 4 (lower is better)
Translates to: EHGPLGLQGKDGACLGQPGPDQR*RTSGHC
Trigger: ACAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACC...GGGCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp AAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGGGCCATAGGGGTAGATaGGATACACGCCGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: KRGGRTWTLGTSGERWGLGHRGR*DTRRLP
Trigger: AGGAAGACGGCGTGTATCTCATCTACCCCTATGGCC...CAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR GCA 90 bp AGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCCGCAGCTCATACTTCTaGTTCAGTGTCAGGAGGTGC +
Preference number: 4 (lower is better)
Translates to: SVEGEHGPLGLQGKDGACRSSYF*FSVRRC
Trigger: GCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCG...GCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR GCA 90 bp GTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCAGGGCTGCACAGTTCTaGACGAAGAGGTCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: VKRGGRTWTLGTSGERWGRAAQF*TKRSWS
Trigger: GGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCCT...GCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGGGTCCCGATCAAAGGTaGAGAACTTCTGGCCACTGT +
Preference number: 4 (lower is better)
Translates to: GGRTWTLGTSGERWGLLGGPDQR*RTSGHC
Trigger: ACAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACC...CCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp TGGGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGAACCAGAAGGCTCCTaGGGAGAGGGCTGCACAGTT +
Preference number: 4 (lower is better)
Translates to: WVKRGGRTWTLGTSGERWEPEGS*GEGCTV
Trigger: AACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTC...CCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR GCA 90 bp AAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTTTCAGTGTCAGGAGGTaGAGGTTCTGCAGCCCTAGG +
Preference number: 4 (lower is better)
Translates to: KAWRENMDPWDFRGKMGPFSVRR*RFCSPR
Trigger: CCTAGGGCTGCAGAACCTGCACCTCCTGACACTGAA...AGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS-3UTR CCA 90 bp GAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCTGGCGTTGGGGGAGATaGAGAAGTCAATGTACTTGG +
Preference number: 4 (lower is better)
Translates to: ENMDPWDFRGKMGPAWASWRWGR*RSQCTW
Trigger: CCAAGTACATTGACTTCTCCATCTCCCCCAACGCCA...GCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
3UTR CAA 72 bp AATGCATCAGGGCGTGGCTGTATGTGGGACAGGGATTaGCCAGGGCATGGCTGGTGCTCAGGAATTGTGGGT +
Preference number: 4 (lower is better)
Translates to: NASGRGCMWDRD*PGHGWCSGIVG
Trigger: ACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCCACGCCCTGATGCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp GAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCCCGGAAGAAACTCACTaGGCCGTTGAATCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: ENMDPWDFRGKMGPAWASPEETH*AVESFL
Trigger: CAGAAAAGATTCAACGGCTCAGTGAGTTTCTTCCGG...GCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCCCGTTGAATCTTTTCTaGAAAACCGTCCACTTGCCG +
Preference number: 4 (lower is better)
Translates to: ENMDPWDFRGKMGPAWASPLNLF*KTVHLP
Trigger: CGGCAAGTGGACGGTTTTCCAGAAAAGATTCAACGG...GCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTCCGTTGAATCTTTTCTaGAAAACCGTCCACTTGCCG +
Preference number: 4 (lower is better)
Translates to: AWRENMDPWDFRGKMGPAPLNLF*KTVHLP
Trigger: CGGCAAGTGGACGGTTTTCCAGAAAAGATTCAACGG...AGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp AAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGTGGCGTTGGGGGAGATaGAGAAGTCAATGTACTTGG +
Preference number: 4 (lower is better)
Translates to: KRGGRTWTLGTSGERWGLWRWGR*RSQCTW
Trigger: CCAAGTACATTGACTTCTCCATCTCCCCCAACGCCA...CAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCTTGAGATTGGCGAAATaGCAGCTTCGGAACCAGAAG +
Preference number: 4 (lower is better)
Translates to: ENMDPWDFRGKMGPAWASLRLAK*QLRNQK
Trigger: CTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAA...GCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
3UTR CAA 72 bp ACAGGGATTTGCCAGGGCATGGCTGGTGCTCAGGAATaGTGGGTAAAGCGTGGAGGGAGAACATGGACCCTT +
Preference number: 4 (lower is better)
Translates to: TGICQGMAGAQE*WVKRGGRTWTL
Trigger: AAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp AGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCAACTCACTGAGCCGTTaGATCTTTTCTGGAAAACCG +
Preference number: 4 (lower is better)
Translates to: SVEGEHGPLGLQGKDGACNSLSR*IFSGKP
Trigger: CGGTTTTCCAGAAAAGATTCAACGGCTCAGTGAGTT...GCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp GTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCCGGAAGAAACTCACTaGGCCGTTGAATCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: VKRGGRTWTLGTSGERWGPEETH*AVESFL
Trigger: CAGAAAAGATTCAACGGCTCAGTGAGTTTCTTCCGG...GCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp TGGGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGTCCATTGGGCCCAATTaGTGCCATTGGCATAGGAGA +
Preference number: 4 (lower is better)
Translates to: WVKRGGRTWTLGTSGERWSIGPN*CHWHRR
Trigger: TCTCCTATGCCAATGGCATCAATTGGGCCCAATGGA...CCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp AAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTTTGAGATTGGCGAAATaGCAGCTTCGGAACCAGAAG +
Preference number: 4 (lower is better)
Translates to: KAWRENMDPWDFRGKMGPLRLAK*QLRNQK
Trigger: CTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAA...AGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CCA 90 bp GGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGAGAAGTCAATGTACTTaGCATAGGCTGTGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: GKAWRENMDPWDFRGKMGRSQCT*HRLCCS
Trigger: AGAACAACACAGCCTATGCCAAGTACATTGACTTCT...CCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR TCA 90 bp AGAAGCAACTTGGAGTTTTTAATGGATTTCAGCCAGATCCAGGCTAGGATGGCTTCCATTGGGCCCAATTaGTGCCATTGGCATAGGAGA +
Preference number: 4 (lower is better)
Translates to: RSNLEFLMDFSQIQARMASIGPN*CHWHRR
Trigger: TCTCCTATGCCAATGGCATCAATTGGGCCCAATGGA...AGCCATCCTAGCCTGGATCTGGCTGAAATCCATTAAAAACTCCAAGTTGCTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
3UTR CAA 72 bp GTCAACAAGCCTATCTTTGCCATGACGACTTCAGAGTaGAGCAGTAGCCGTGGTGAGTATTGTTTTGGTGGT +
Preference number: 4 (lower is better)
Translates to: VNKPIFAMTTSE*SSSRGEYCFGG
Trigger: ACCACCAAAACAATACTCACCACGGCTACTGCTCAACTCTGAAGTCGTCATGGCAAAGATAGGCTTGTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR GCA 90 bp TTTGCCATCAAAATGAGGCCTGTGAAATACAAGGTTTTCTTTAACCTGACTCTGCGCAGCTCATACTTCTaGTTCAGTGTCAGGAGGTGC +
Preference number: 4 (lower is better)
Translates to: FAIKMRPVKYKVFFNLTLRSSYF*FSVRRC
Trigger: GCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCG...CAGAGTCAGGTTAAAGAAAACCTTGTATTTCACAGGCCTCATTTTGATGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS-3UTR CAA 90 bp AAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCCGGTCAGCAGAGACTaGGCTGAGGGGCAGCCCCCA +
Preference number: 5 (lower is better)
Translates to: KRGGRTWTLGTSGERWGLPVSRD*AEGQPP
Trigger: TGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCGG...CAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS GCA 90 bp ACGCGCAGCTCATACTTCTGCTTCAGTGTCAGGAGGTGCAGGTTCTaGAGCCCTAGGGACGGGTGGCAGCCGGTCAGCAGAGACTTGGCT +
Preference number: 5 (lower is better)
Translates to: TRSSYFCFSVRRCRF*SPRDGWQPVSRDLA
Trigger: AGCCAAGTCTCTGCTGACCGGCTGCCACCCGTCCCTAGGGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS TCA 90 bp ACCGTTGAGATTGGCGAAATGGCAGCTTCGGAACCAGAAGGCTCCTaGGGAGAGGGCTGCACAGTTCTGCACGAAGAGGTCCTGGTCCCG +
Preference number: 5 (lower is better)
Translates to: TVEIGEMAASEPEGS*GEGCTVLHEEVLVP
Trigger: CGGGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAACGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS CCA 90 bp GGGCTGCACAGTTCTGCACGAAGAGGTCCTGGTCCCGATCAAAGGTaGAGAACTTCTGGCCACTGTGGTAGGACAGTGAGTCACCTGCCC +
Preference number: 5 (lower is better)
Translates to: GLHSSARRGPGPDQR*RTSGHCGRTVSHLP
Trigger: GGGCAGGTGACTCACTGTCCTACCACAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CAA 90 bp AGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCCTGCTTGGGCCAGCCTCAGCACTGATGGCGTaGGGGGAGATGGAGAAGTCA +
Preference number: 5 (lower is better)
Translates to: RTWTLGTSGERWGLLGPASALMA*GEMEKS
Trigger: TGACTTCTCCATCTCCCCCAACGCCATCAGTGCTGA...GGCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS TCA 90 bp TGTCGCAGAAGACGGGCACCGGCACACTGGGGCCATAGGGGTAGATaGGATACACGCCGTCTTCCTGATAGCCCTGGGCGTAGATATCAT +
Preference number: 5 (lower is better)
Translates to: CRRRRAPAHWGHRGR*DTRRLPDSPGRRYH
Trigger: ATGATATCTACGCCCAGGGCTATCAGGAAGACGGCGTGTATCTCATCTACCCCTATGGCCCCAGTGTGCCGGTGCCCGTCTTCTGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS GCA 90 bp CAGCTTCGGAACCAGAAGGCTCCTGAGGAGAGGGCTGCACAGTTCTaGACGAAGAGGTCCTGGTCCCGATCAAAGGTGGAGAACTTCTGG +
Preference number: 5 (lower is better)
Translates to: QLRNQKAPEERAAQF*TKRSWSRSKVENFW
Trigger: CCAGAAGTTCTCCACCTTTGATCGGGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTCCGAAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS TCA 90 bp TGCCATTGGCATAGGAGAGATGGGAACCACCCAGGTAGAAACCGTTaGGATTGGCGAAATGGCAGCTTCGGAACCAGAAGGCTCCTGAGG +
Preference number: 5 (lower is better)
Translates to: CHWHRRDGNHPGRNR*DWRNGSFGTRRLLR
Trigger: CCTCAGGAGCCTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAACGGTTTCTACCTGGGTGGTTCCCATCTCTCCTATGCCAATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CAA 90 bp GGTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGATAGAAGCCTTTCCATaGGGCCCAATTGATGCCATT +
Preference number: 5 (lower is better)
Translates to: GKAWRENMDPWDFRGKMGIEAFP*GPIDAI
Trigger: AATGGCATCAATTGGGCCCAATGGAAAGGCTTCTAT...CCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CAA 90 bp GTAAAGCGTGGAGGGAGAACATGGACCCTTGGGACTTCAGGGGAAAGATGGGGCAAACTCACTGAGCCGTaGAATCTTTTCTGGAAAACC +
Preference number: 5 (lower is better)
Translates to: VKRGGRTWTLGTSGERWGKLTEP*NLFWKT
Trigger: GGTTTTCCAGAAAAGATTCAACGGCTCAGTGAGTTT...GCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS-3UTR CAA 90 bp TGTGCAAGAGCTGATTGGCAATGCCACAGGTGCTGCATGACTCTGTCGAGGGTAAAACTCACTGAGCCGTaGAATCTTTTCTGGAAAACC +
Preference number: 5 (lower is better)
Translates to: CARADWQCHRCCMTLSRVKLTEP*NLFWKT
Trigger: GGTTTTCCAGAAAAGATTCAACGGCTCAGTGAGTTT...TACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS TCA 72 bp AGACGGGCACCGGCACACTGGGGCCATAGGGGTAGATaGGATACACGCCGTCTTCCTGATAGCCCTGGGCGT +
Preference number: 6 (lower is better)
Translates to: RRAPAHWGHRGR*DTRRLPDSPGR
Trigger: ACGCCCAGGGCTATCAGGAAGACGGCGTGTATCTCATCTACCCCTATGGCCCCAGTGTGCCGGTGCCCGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS CCA 72 bp GAGGAGAGGGCTGCACAGTTCTGCACGAAGAGGTCCTaGTCCCGATCAAAGGTGGAGAACTTCTGGCCACTG +
Preference number: 6 (lower is better)
Translates to: EERAAQFCTKRS*SRSKVENFWPL
Trigger: CAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCCTCTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS TCA 72 bp ATTGGCGAAATGGCAGCTTCGGAACCAGAAGGCTCCTaGGGAGAGGGCTGCACAGTTCTGCACGAAGAGGTC +
Preference number: 6 (lower is better)
Translates to: IGEMAASEPEGS*GEGCTVLHEEV
Trigger: GACCTCTTCGTGCAGAACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTCCGAAGCTGCCATTTCGCCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS CAA 72 bp ATCTTTTCTGGAAAACCGTCCACTTGCCGCCCTCAGTaGTCATGTCGCAGAAGACGGGCACCGGCACACTGG +
Preference number: 6 (lower is better)
Translates to: IFSGKPSTCRPQ*SCRRRRAPAHW
Trigger: CCAGTGTGCCGGTGCCCGTCTTCTGCGACATGACAACTGAGGGCGGCAAGTGGACGGTTTTCCAGAAAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS CAA 90 bp GTCTTCCTGATAGCCCTGGGCGTAGATATCATCACAGTCCAGGGGTaGCTGAAGACAGGACTTCTCCAGAGCATCTCCCCGGATCCCAGA +
Preference number: 6 (lower is better)
Translates to: VFLIALGVDIITVQG*LKTGLLQSISPDPR
Trigger: TCTGGGATCCGGGGAGATGCTCTGGAGAAGTCCTGTCTTCAGCAACCCCTGGACTGTGATGATATCTACGCCCAGGGCTATCAGGAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS GCA 72 bp TCAAAGTCTTCCAAGTCCACGCGCAGCTCATACTTCTaGTTCAGTGTCAGGAGGTGCAGGTTCTGCAGCCCC +
Preference number: 6 (lower is better)
Translates to: SKSSKSTRSSYF*FSVRRCRFCSP
Trigger: GGGGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGTGGACTTGGAAGACTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064783.10
CDS TCA 72 bp CAGCCACGTAGAGGGTATAGCCATCCTCCTCAGCACTaGTGGCGTTGGGGGAGATGGAGAAGTCAATGTACT +
Preference number: 6 (lower is better)
Translates to: QPRRGYSHPPQH*WRWGRWRSQCT
Trigger: AGTACATTGACTTCTCCATCTCCCCCAACGCCATCAGTGCTGAGGAGGATGGCTATACCCTCTACGTGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS GCA 72 bp TCAAAGTCTTCCAAGTCCACGCGCAGCTCATACTTCTaGTTCAGTGTCAGGAGGTGCAGGTTCTGCAGCCCT +
Preference number: 6 (lower is better)
Translates to: SKSSKSTRSSYF*FSVRRCRFCSP
Trigger: AGGGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGTGGACTTGGAAGACTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040522.7
CDS CCA 72 bp AGTTCTGCACGAAGAGGTCCTGGTCCCGATCAAAGGTaGAGAACTTCTGGCCACTGTGGTAGGACAGTGAGT +
Preference number: 6 (lower is better)
Translates to: SSARRGPGPDQR*RTSGHCGRTVS
Trigger: ACTCACTGTCCTACCACAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACCAGGACCTCTTCGTGCAGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10
CDS TCA 72 bp CATAGGAGAGATGGGAACCACCCAGGTAGAAACCGTTaGGATTGGCGAAATGGCAGCTTCGGAACCAGAAGG +
Preference number: 6 (lower is better)
Translates to: HRRDGNHPGRNR*DWRNGSFGTRR
Trigger: CCTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAACGGTTTCTACCTGGGTGGTTCCCATCTCTCCTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040522.7
ENSMUST00000064783.10