RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for METTL7A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058057

Ensembl transcript IDs: ENSMUST00000075420.6

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAGCAGCCAGTGGCAAAACCCTCAGTCGAAGGACAGAGAGCCACTaGCCAGAGCACAGGTGGCAGCCAAAGCAGACTAGTAACACCAGG +
Preference number: 1 (lower is better)
Translates to: AAASGKTLSRRTESH*PEHRWQPKQTSNTR
Trigger: CCTGGTGTTACTAGTCTGCTTTGGCTGCCACCTGTGCTCTGGCCAGTGGCTCTCTGTCCTTCGACTGAGGGTTTTGCCACTGGCTGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 90 bp AAAACCCTCAGTCGAAGGACAGAGAGCCACTGGCCAGAGCACAGGTaGCAGCCAAAGCAGACTAGTAACACCAGGACAGCAAGTGGGTTC +
Preference number: 1 (lower is better)
Translates to: KTLSRRTESHWPEHR*QPKQTSNTRTASGF
Trigger: GAACCCACTTGCTGTCCTGGTGTTACTAGTCTGCTTTGGCTGCCACCTGTGCTCTGGCCAGTGGCTCTCTGTCCTTCGACTGAGGGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR TCA 90 bp TGGCAGCCAAAGCAGACTAGTAACACCAGGACAGCAAGTGGGTTCTaGTTCCTTCTTACCAGGATGGGGGAGGGAAGGAGGTGTTCCTGT +
Preference number: 1 (lower is better)
Translates to: WQPKQTSNTRTASGF*FLLTRMGEGRRCSC
Trigger: ACAGGAACACCTCCTTCCCTCCCCCATCCTGGTAAGAAGGAATCAGAACCCACTTGCTGTCCTGGTGTTACTAGTCTGCTTTGGCTGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 90 bp AGTTCTGTGATGACGCTGGTGTGTAAAGTGCACTTATACGAGCTGTaGAGTGCAGGACAGTGCAGCAGCCAGTGGCAAAACCCTCAGTCG +
Preference number: 1 (lower is better)
Translates to: SSVMTLVCKVHLYEL*SAGQCSSQWQNPQS
Trigger: CGACTGAGGGTTTTGCCACTGGCTGCTGCACTGTCCTGCACTCCACAGCTCGTATAAGTGCACTTTACACACCAGCGTCATCACAGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR TCA 90 bp ATCTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTCGGACCTTCAGAAGAGCAATCGGGTACTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ISLGMVVSHHVVAGI*TSDLQKSNRVLLPT
Trigger: AGTGGGTAAGAGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 90 bp GAGTCAGATCTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTCGGACCTTCAGAAGAGCAATCGGGTACTCTT +
Preference number: 1 (lower is better)
Translates to: ESDLVRDGCEPPCGC*DLNFGPSEEQSGTL
Trigger: AAGAGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAGATCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR TCA 90 bp CCTAGTATGTCACTTCTAAGAGAGGGTGGGGGAGAAAGCAAAGATTaGAAGATCATAGCCACACAGTCACACCCCACTCTGATCCTTCCA +
Preference number: 1 (lower is better)
Translates to: PSMSLLREGGGESKD*KIIATQSHPTLILP
Trigger: TGGAAGGATCAGAGTGGGGTGTGACTGTGTGGCTATGATCTTTCAATCTTTGCTTTCTCCCCCACCCTCTCTTAGAAGTGACATACTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 90 bp ATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTGTGTCATTTaGATGCTAAGTGTCTCCCTGCAGAGAATTCCCATCTGTTCTGTG +
Preference number: 1 (lower is better)
Translates to: ILPKWLRSTNCVCVI*MLSVSLQRIPICSV
Trigger: CACAGAACAGATGGGAATTCTCTGCAGGGAGACACTTAGCATCCAAATGACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR GCA 90 bp CACCAGGACAGCAAGTGGGTTCTGATTCCTTCTTACCAGGATGGGGGAGGGAAGGTAAGTCTCCCCCACTaGTTCCTTTTCAAAGGCCTA +
Preference number: 2 (lower is better)
Translates to: HQDSKWVLIPSYQDGGGKVSLPH*FLFKGL
Trigger: TAGGCCTTTGAAAAGGAAGCAGTGGGGGAGACTTAC...CTTCCCTCCCCCATCCTGGTAAGAAGGAATCAGAACCCACTTGCTGTCCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CAA 90 bp GATCTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTCGGACCTTCAGAAGAGCAATCGGGTACTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DLVRDGCEPPCGCWD*NFGPSEEQSGTLTH
Trigger: GTGGGTAAGAGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR GCA 90 bp TACAATGTATCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTAGGGATACGAGCTGTGGAGTaGAGGACAGTGCAGCAGCCA +
Preference number: 2 (lower is better)
Translates to: YNVSVFRHSRRGSQISLGIRAVE*RTVQQP
Trigger: TGGCTGCTGCACTGTCCTGCACTCCACAGCTCGTAT...CCCTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGATACATTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR CCA 90 bp TACAATGTATCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTAGGGCAGTGCAGCAGCCAGTaGCAAAACCCTCAGTCGAAG +
Preference number: 2 (lower is better)
Translates to: YNVSVFRHSRRGSQISLGQCSSQ*QNPQSK
Trigger: CTTCGACTGAGGGTTTTGCCACTGGCTGCTGCACTG...CCCTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGATACATTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR GCA 90 bp GGTTGCTGGGATTTGAACTTCGGACCTTCAGAAGAGCAATCGGGTACTCTTACCCGCTGGTGTGTAAAGTaGACTTATACGAGCTGTGGA +
Preference number: 2 (lower is better)
Translates to: GCWDLNFGPSEEQSGTLTRWCVK*TYTSCG
Trigger: TCCACAGCTCGTATAAGTGCACTTTACACACCAGCG...GGTAAGAGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR CCA 90 bp AGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCATGTGTGTGTGTCATTTaGATGCTAAGTGTCTCCCTG +
Preference number: 2 (lower is better)
Translates to: RDGCEPPCGCWDLNFGPSCVCVI*MLSVSL
Trigger: CAGGGAGACACTTAGCATCCAAATGACACACACACA...TGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR TCA 90 bp TACAATGTATCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTAGGGGTGGTTGCTGGGATTTaGACTTCGGACCTTCAGAAG +
Preference number: 2 (lower is better)
Translates to: YNVSVFRHSRRGSQISLGVVAGI*TSDLQK
Trigger: CTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCAC...CCCTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGATACATTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR TCA 90 bp CACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTGTGTCACAGCAAGTGGGTTCTaGTTCCTTCTTACCAGGATG +
Preference number: 2 (lower is better)
Translates to: HPTLILPKWLRSTNCVCVTASGF*FLLTRM
Trigger: CATCCTGGTAAGAAGGAATCAGAACCCACTTGCTGT...GACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR TCA 90 bp GTGTGTCATTTGGATGCTAAGTGTCTCCCTGCAGAGAATTCCCATCTGTTCTGTAGTTCAAAGCTGCTCTaGTTTGGTTTTGATTCGGTA +
Preference number: 2 (lower is better)
Translates to: VCHLDAKCLPAENSHLFCSSKLL*FGFDSV
Trigger: TACCGAATCAAAACCAAATCAGAGCAGCTTTGAACT...ACAGAACAGATGGGAATTCTCTGCAGGGAGACACTTAGCATCCAAATGACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR TCA 90 bp CAGTCACACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGGCTCTGATTTGGTTTTaGTTCGGTAAGAAACAACAT +
Preference number: 2 (lower is better)
Translates to: QSHPTLILPKWLRSTNCVALIWF*FGKKQH
Trigger: ATGTTGTTTCTTACCGAATCAAAACCAAATCAGAGC...CACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTGTGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp TACGAGCTGTGGAGTGCAGGACAGTGCAGCAGCCAGTaGCAAAACCCTCAGTCGAAGGACAGAGAGCCACTG +
Preference number: 3 (lower is better)
Translates to: YELWSAGQCSSQ*QNPQSKDREPL
Trigger: CAGTGGCTCTCTGTCCTTCGACTGAGGGTTTTGCCACTGGCTGCTGCACTGTCCTGCACTCCACAGCTCGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp AGTGGCAAAACCCTCAGTCGAAGGACAGAGAGCCACTaGCCAGAGCACAGGTGGCAGCCAAAGCAGACTAGT +
Preference number: 3 (lower is better)
Translates to: SGKTLSRRTESH*PEHRWQPKQTS
Trigger: ACTAGTCTGCTTTGGCTGCCACCTGTGCTCTGGCCAGTGGCTCTCTGTCCTTCGACTGAGGGTTTTGCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR GCA 72 bp AAAGTGCACTTATACGAGCTGTGGAGTGCAGGACAGTaGAGCAGCCAGTGGCAAAACCCTCAGTCGAAGGAC +
Preference number: 3 (lower is better)
Translates to: KVHLYELWSAGQ*SSQWQNPQSKD
Trigger: GTCCTTCGACTGAGGGTTTTGCCACTGGCTGCTGCACTGTCCTGCACTCCACAGCTCGTATAAGTGCACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR-3UTR CAA 90 bp TCACCAGCCCCTGATAGTGTAGTCTTGCATAGCATGCTCTCAGCCCTGGGTTCAAGACCTTCGGTCCCTTaGGAGGGAGAGTTCAAAGCT +
Preference number: 3 (lower is better)
Translates to: SPAPDSVVLHSMLSALGSRPSVP*EGEFKA
Trigger: AGCTTTGAACTCTCCCTCCAAAGGGACCGAAGGTCT...TGAACCCAGGGCTGAGAGCATGCTATGCAAGACTACACTATCAGGGGCTGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR TCA 72 bp AAGCAGACTAGTAACACCAGGACAGCAAGTGGGTTCTaGTTCCTTCTTACCAGGATGGGGGAGGGAAGGAGG +
Preference number: 3 (lower is better)
Translates to: KQTSNTRTASGF*FLLTRMGEGRR
Trigger: CCTCCTTCCCTCCCCCATCCTGGTAAGAAGGAATCAGAACCCACTTGCTGTCCTGGTGTTACTAGTCTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR TCA 72 bp GGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTCGGACCTTCAGAAGAGCAATCGGGTACTC +
Preference number: 3 (lower is better)
Translates to: GMVVSHHVVAGI*TSDLQKSNRVL
Trigger: GAGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp ATGACGCTGGTGTGTAAAGTGCACTTATACGAGCTGTaGAGTGCAGGACAGTGCAGCAGCCAGTGGCAAAAC +
Preference number: 3 (lower is better)
Translates to: MTLVCKVHLYEL*SAGQCSSQWQN
Trigger: GTTTTGCCACTGGCTGCTGCACTGTCCTGCACTCCACAGCTCGTATAAGTGCACTTTACACACCAGCGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp CTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTCGGACCTTCAGAAGAGCAATCG +
Preference number: 3 (lower is better)
Translates to: LVRDGCEPPCGC*DLNFGPSEEQS
Trigger: CGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR GCA 72 bp GATCTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTCGGACCTTCAGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: DLVRDGCEPPCG*WDLNFGPSEEQ
Trigger: TTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp GCCACACAGTCACACCCCACTCTGATCCTTCCAAAATaGCTAAGATCTACTAACTGTGTGTGTGTCATTTGG +
Preference number: 3 (lower is better)
Translates to: ATQSHPTLILPK*LRSTNCVCVIW
Trigger: CCAAATGACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTGTGACTGTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp AAATGGCTAAGATCTACTAACTGTGTGTGTGTCATTTaGATGCTAAGTGTCTCCCTGCAGAGAATTCCCATC +
Preference number: 3 (lower is better)
Translates to: KWLRSTNCVCVI*MLSVSLQRIPI
Trigger: GATGGGAATTCTCTGCAGGGAGACACTTAGCATCCAAATGACACACACACAGTTAGTAGATCTTAGCCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CCA 72 bp GTTCCTGTGTTAGTCAGCCGTGGATTTTCGATTTTCTaGGATTTATTTATTCGGTTTGCAAGCTGTAAGTCT +
Preference number: 3 (lower is better)
Translates to: VPVLVSRGFSIF*DLFIRFASCKS
Trigger: AGACTTACAGCTTGCAAACCGAATAAATAAATCCCAGAAAATCGAAAATCCACGGCTGACTAACACAGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR GCA 90 bp GCAGGACAGTGCAGCAGCCAGTGGCAAAACCCTCAGTCGAAGGACAGAGAGCCACCATCGGTCACCTGGTaGATGTCCTCCCCGACTGCC +
Preference number: 4 (lower is better)
Translates to: AGQCSSQWQNPQSKDREPPSVTW*MSSPTA
Trigger: GGCAGTCGGGGAGGACATGCACCAGGTGACCGATGG...TGGCTCTCTGTCCTTCGACTGAGGGTTTTGCCACTGGCTGCTGCACTGTCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CCA 90 bp CCAGGATGGGGGAGGGAAGGAGGTGTTCCTGTGTTAGTCAGCCGTGGATTTTCGCGCAGAATCTTCTCTTaGTTCTTCACCGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: PGWGREGGVPVLVSRGFSRRIFS*FFTEHS
Trigger: GCTGTGCTCGGTGAAGAACCAAGAGAAGATTCTGCG...CGAAAATCCACGGCTGACTAACACAGGAACACCTCCTTCCCTCCCCCATCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR TCA 90 bp TTACCAGGATGGGGGAGGGAAGGAGGTGTTCCTGTGTTAGTCAGCCGTGGATTTCTGCCACATGGTCTATaGAGTAAAAAGCCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: LPGWGREGGVPVLVSRGFLPHGL*SKKPLP
Trigger: CGGGAGGGGCTTTTTACTTCATAGACCATGTGGCAG...AAATCCACGGCTGACTAACACAGGAACACCTCCTTCCCTCCCCCATCCTGGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
3UTR CAA 72 bp AGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTCGGACCTTCAGAAGAGCAATCGGGTACT +
Preference number: 4 (lower is better)
Translates to: RDGCEPPCGCWD*NFGPSEEQSGT
Trigger: AGTACCCGATTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR TCA 90 bp CACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTGTGTCACTCCTGCAGATTGCTaGAGAGCTCCTGCTTTAGGC +
Preference number: 4 (lower is better)
Translates to: HPTLILPKWLRSTNCVCVTPADC*RAPALG
Trigger: GCCTAAAGCAGGAGCTCTTCAGCAATCTGCAGGAGT...GACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CCA 90 bp CACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTGTGTCTGTTCAGCAGAAATATaGGAAACGCCACGATGCAGA +
Preference number: 4 (lower is better)
Translates to: HPTLILPKWLRSTNCVCVCSAEI*ETPRCR
Trigger: TCTGCATCGTGGCGTTTCCCATATTTCTGCTGAACA...GACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR GCA 90 bp ACACAGTCACACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTATACCCAGCTCCACATaGCTAGAATGTTCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: TQSHPTLILPKWLRSTNCIPSST*LECSAE
Trigger: TTCTGCTGAACATTCTAGGCATGTGGAGCTGGGTAT...ACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTGTGACTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 90 bp CCAAGGTCAAGGGGAGCGGGGCCTGGATGTGCTGCAGGTTCAGCTTaGAGAAGTTGGCCTGCTCTATGGCCTTCCAGCTCTCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: PRSRGAGPGCAAGSA*RSWPALWPSSSLWS
Trigger: TGACCAGAGAGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGCACATCCAGGCCCCGCTCCCCTTGACCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 90 bp ACCTGGTGCATGTCCTCCCCGACTGCCACCACGAAGCGCTCGAACTaGAGCTGCCGGTTCTCTGCGACGCTCTTGAACAAGAACTTCTCA +
Preference number: 5 (lower is better)
Translates to: TWCMSSPTATTKRSN*SCRFSATLLNKNFS
Trigger: TGAGAAGTTCTTGTTCAAGAGCGTCGCAGAGAACCGGCAGCTGCAGTTCGAGCGCTTCGTGGTGGCAGTCGGGGAGGACATGCACCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 90 bp TTTTGCATACCCAGCTCCACATGCCTAGAATGTTCAGCAGAAATATaGGAAACGCCACGATGCAGACCACCAGCCGCATGGCCTGGACGG +
Preference number: 5 (lower is better)
Translates to: FCIPSSTCLECSAEI*ETPRCRPPAAWPGR
Trigger: CCGTCCAGGCCATGCGGCTGGTGGTCTGCATCGTGGCGTTTCCCATATTTCTGCTGAACATTCTAGGCATGTGGAGCTGGGTATGCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CAA 90 bp TTACCAGGATGGGGGAGGGAAGGAGGTGTTCCTGTGTTAGTCAGCCGTGGATTTTGCTGCAGGTTCAGCTaGGAGAAGTTGGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: LPGWGREGGVPVLVSRGFCCRFS*EKLACS
Trigger: AGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGCA...AAATCCACGGCTGACTAACACAGGAACACCTCCTTCCCTCCCCCATCCTGGTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 90 bp CCTGGATGTGCTGCAGGTTCAGCTTGGAGAAGTTGGCCTGCTCTATaGCCTTCCAGCTCTCTCTGGTCAGATTGCATCCGTCAAAAGCAA +
Preference number: 5 (lower is better)
Translates to: PGCAAGSAWRSWPAL*PSSSLWSDCIRQKQ
Trigger: TTGCTTTTGACGGATGCAATCTGACCAGAGAGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGCACATCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CAA 90 bp AGCACAGGTGGCAGCCAAAGCAGACTAGTAACACCAGGACAGCAAGTGGGTTCTACGCAGAATCTTCTCTaGGTTCTTCACCGAGCACAG +
Preference number: 5 (lower is better)
Translates to: STGGSQSRLVTPGQQVGSTQNLL*VLHRAQ
Trigger: CTGTGCTCGGTGAAGAACCAAGAGAAGATTCTGCGT...AGAACCCACTTGCTGTCCTGGTGTTACTAGTCTGCTTTGGCTGCCACCTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CAA 90 bp CAGTCACACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTTCAGCTTGGAGAAGTaGGCCTGCTCTATGGCCTTC +
Preference number: 5 (lower is better)
Translates to: QSHPTLILPKWLRSTNCVFSLEK*ACSMAF
Trigger: GAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAA...CACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTGTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 90 bp GCTTCAGGAAGTAGGGAAAGCACTTTTTGCATACCCAGCTCCACATaGCTAGAATGTTCAGCAGAAATATGGGAAACGCCACGATGCAGA +
Preference number: 5 (lower is better)
Translates to: ASGSRESTFCIPSST*LECSAEIWETPRCR
Trigger: TCTGCATCGTGGCGTTTCCCATATTTCTGCTGAACATTCTAGGCATGTGGAGCTGGGTATGCAAAAAGTGCTTTCCCTACTTCCTGAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS-3UTR CAA 90 bp CACCCCACTCTGATCCTTCCAAAATGGCTAAGATCTACTAACTGTGTGTGTGTCCTCTCTCTGGTCAGATaGCATCCGTCAAAAGCAAGG +
Preference number: 5 (lower is better)
Translates to: HPTLILPKWLRSTNCVCVLSLVR*HPSKAR
Trigger: CCTTGCTTTTGACGGATGCAATCTGACCAGAGAGAG...GACACACACACAGTTAGTAGATCTTAGCCATTTTGGAAGGATCAGAGTGGGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 90 bp TGTATATCATGGCGAACCGCTTCAGGAAGTAGGGAAAGCACTTTTTaGATACCCAGCTCCACATGCCTAGAATGTTCAGCAGAAATATGG +
Preference number: 5 (lower is better)
Translates to: CISWRTASGSRESTF*IPSSTCLECSAEIW
Trigger: CCATATTTCTGCTGAACATTCTAGGCATGTGGAGCTGGGTATGCAAAAAGTGCTTTCCCTACTTCCTGAAGCGGTTCGCCATGATATACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 72 bp ATGTCCTCCCCGACTGCCACCACGAAGCGCTCGAACTaGAGCTGCCGGTTCTCTGCGACGCTCTTGAACAAG +
Preference number: 6 (lower is better)
Translates to: MSSPTATTKRSN*SCRFSATLLNK
Trigger: CTTGTTCAAGAGCGTCGCAGAGAACCGGCAGCTGCAGTTCGAGCGCTTCGTGGTGGCAGTCGGGGAGGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 72 bp AGGGGAGCGGGGCCTGGATGTGCTGCAGGTTCAGCTTaGAGAAGTTGGCCTGCTCTATGGCCTTCCAGCTCT +
Preference number: 6 (lower is better)
Translates to: RGAGPGCAAGSA*RSWPALWPSSS
Trigger: AGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGCACATCCAGGCCCCGCTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CAA 90 bp ACCAAGGTCAAGGGGAGCGGGGCCTGGATGTGCTGCAGGTTCAGCTaGGAGAAGTTGGCCTGCTCTATGGCCTTCCAGCTCTCTCTGGTC +
Preference number: 6 (lower is better)
Translates to: TKVKGSGAWMCCRFS*EKLACSMAFQLSLV
Trigger: GACCAGAGAGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGCACATCCAGGCCCCGCTCCCCTTGACCTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 72 bp TCCCCGACTGCCACCACGAAGCGCTCGAACTGCAGCTaGCGGTTCTCTGCGACGCTCTTGAACAAGAACTTC +
Preference number: 6 (lower is better)
Translates to: SPTATTKRSNCS*RFSATLLNKNF
Trigger: GAAGTTCTTGTTCAAGAGCGTCGCAGAGAACCGGCAGCTGCAGTTCGAGCGCTTCGTGGTGGCAGTCGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CAA 90 bp GAGAAGTTGGCCTGCTCTATGGCCTTCCAGCTCTCTCTGGTCAGATaGCATCCGTCAAAAGCAAGGAACCACACACGAGCCAGGACCTGC +
Preference number: 6 (lower is better)
Translates to: EKLACSMAFQLSLVR*HPSKARNHTRARTC
Trigger: GCAGGTCCTGGCTCGTGTGTGGTTCCTTGCTTTTGACGGATGCAATCTGACCAGAGAGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 72 bp CCCAGCTCCACATGCCTAGAATGTTCAGCAGAAATATaGGAAACGCCACGATGCAGACCACCAGCCGCATGG +
Preference number: 6 (lower is better)
Translates to: PSSTCLECSAEI*ETPRCRPPAAW
Trigger: CCATGCGGCTGGTGGTCTGCATCGTGGCGTTTCCCATATTTCTGCTGAACATTCTAGGCATGTGGAGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 72 bp GCTGCAGGTTCAGCTTGGAGAAGTTGGCCTGCTCTATaGCCTTCCAGCTCTCTCTGGTCAGATTGCATCCGT +
Preference number: 6 (lower is better)
Translates to: AAGSAWRSWPAL*PSSSLWSDCIR
Trigger: ACGGATGCAATCTGACCAGAGAGAGCTGGAAGGCCATAGAGCAGGCCAACTTCTCCAAGCTGAACCTGCAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS CCA 72 bp CCTGCTTTAGGCTCGCCATCTTCCAATTGTATATCATaGCGAACCGCTTCAGGAAGTAGGGAAAGCACTTTT +
Preference number: 6 (lower is better)
Translates to: PALGSPSSNCIS*RTASGSRESTF
Trigger: AAAAGTGCTTTCCCTACTTCCTGAAGCGGTTCGCCATGATATACAATTGGAAGATGGCGAGCCTAAAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6
CDS GCA 72 bp AGTAGGGAAAGCACTTTTTGCATACCCAGCTCCACATaGCTAGAATGTTCAGCAGAAATATGGGAAACGCCA +
Preference number: 6 (lower is better)
Translates to: SRESTFCIPSST*LECSAEIWETP
Trigger: TGGCGTTTCCCATATTTCTGCTGAACATTCTAGGCATGTGGAGCTGGGTATGCAAAAAGTGCTTTCCCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075420.6