RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for METHIG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093789

Ensembl transcript IDs: ENSMUST00000075675.7, ENSMUST00000175929.2

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAGGCATGCACACTGTATACATACTCTGGGCAGGGGTTGTGAGCTaGCATGGTGCTCTGCAAGAGCCAGTCCCACCCCCTTTCTACAGC +
Preference number: 1 (lower is better)
Translates to: VGMHTVYILWAGVVS*HGALQEPVPPPFYS
Trigger: GCTGTAGAAAGGGGGTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGCCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 90 bp GCACACTGTATACATACTCTGGGCAGGGGTTGTGAGCTGCCATGGTaGTCTGCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTTGCT +
Preference number: 1 (lower is better)
Translates to: AHCIHTLGRGCELPW*SARASPTPFLQPFA
Trigger: AGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 90 bp CATGCACACTGTATACATACTCTGGGCAGGGGTTGTGAGCTGCCATaGTGCTCTGCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTT +
Preference number: 1 (lower is better)
Translates to: HAHCIHTLGRGCELP*CSARASPTPFLQPF
Trigger: AAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTGCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR TCA 90 bp AAGGTGCGCACTGAGGCCAGGCTTGGCAGCAAGCATCTTCATTCCTaGGCCACCTTGCCTCCTCTGGATCCCTTTTCTAAGAAAACACAC +
Preference number: 1 (lower is better)
Translates to: KVRTEARLGSKHLHS*ATLPPLDPFSKKTH
Trigger: GTGTGTTTTCTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCCTGGCCTCAGTGCGCACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 90 bp CTGAGGCCAGGCTTGGCAGCAAGCATCTTCATTCCTGAGCCACCTTaGCTCCTCTGGATCCCTTTTCTAAGAAAACACACTTGGTCTGCA +
Preference number: 1 (lower is better)
Translates to: LRPGLAASIFIPEPP*LLWIPFLRKHTWSA
Trigger: TGCAGACCAAGTGTGTTTTCTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCCTGGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 90 bp GTGAGTATTTACCCACATGTAGGCATGCACACTGTATACATACTCTaGGCAGGGGTTGTGAGCTGCCATGGTGCTCTGCAAGAGCCAGTC +
Preference number: 1 (lower is better)
Translates to: VSIYPHVGMHTVYIL*AGVVSCHGALQEPV
Trigger: GACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGCCTACATGTGGGTAAATACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 90 bp ATAACCTCGGCTTCATTCTCTTCTTCCACTATTTGGGTTCCAAGGTaGGCACTGAGGCCAGGCTTGGCAGCAAGCATCTTCATTCCTGAG +
Preference number: 1 (lower is better)
Translates to: ITSASFSSSTIWVPR*ALRPGLAASIFIPE
Trigger: CTCAGGAATGAAGATGCTTGCTGCCAAGCCTGGCCTCAGTGCGCACCTTGGAACCCAAATAGTGGAAGAAGAGAATGAAGCCGAGGTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 90 bp GGCTTGGCAGCAAGCATCTTCATTCCTGAGCCACCTTGCCTCCTCTaGATCCCTTTTCTAAGAAAACACACTTGGTCTGCACTGCTTGCT +
Preference number: 1 (lower is better)
Translates to: GLAASIFIPEPPCLL*IPFLRKHTWSALLA
Trigger: AGCAAGCAGTGCAGACCAAGTGTGTTTTCTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR TCA 90 bp GCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTTGCTTGCTTGTGTGGATGCTTCCAAGGTGCGCACTaGGGCCAGGCTTGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: ARASPTPFLQPFACLCGCFQGAH*GQAWQQ
Trigger: TTGCTGCCAAGCCTGGCCTCAGTGCGCACCTTGGAA...GCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CAA 90 bp TGGGGCTCAGAGGATAACCTCGGCTTCATTCTCTTCTTCCACTATTaGGGTTCCAAGGTGCGCACTGAGGCCAGGCTTGGCAGCAAGCAT +
Preference number: 2 (lower is better)
Translates to: WGSEDNLGFILFFHY*GSKVRTEARLGSKH
Trigger: ATGCTTGCTGCCAAGCCTGGCCTCAGTGCGCACCTTGGAACCCAAATAGTGGAAGAAGAGAATGAAGCCGAGGTTATCCTCTGAGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR TCA 90 bp CCATTTGCTTGCTTGTGTGGATGCACACACGTGTGGGGCTCAGAGGATAACCTCAAGCATCTTCATTCCTaGGCCACCTTGCCTCCTCTG +
Preference number: 2 (lower is better)
Translates to: PFACLCGCTHVWGSEDNLKHLHS*ATLPPL
Trigger: CAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTT...GAGGTTATCCTCTGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR GCA 90 bp ATTTACCCACATGTAGGCATGCACACTGTATACATACTCTGGGCAGGGGTTGTGCCGCTGCTGCCTGTGTaGACAAAGTCTGGAACTCCA +
Preference number: 2 (lower is better)
Translates to: IYPHVGMHTVYILWAGVVPLLPV*TKSGTP
Trigger: TGGAGTTCCAGACTTTGTGCACACAGGCAGCAGCGG...CACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGCCTACATGTGGGTAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CAA 90 bp GCCACATTTTTGCTAAGAACCTGTTTAGAAGTCTGTCAGAGCCTGTaGGTGCAGGAACCGCTGCTGCCTGTGTGCACAAAGTCTGGAACT +
Preference number: 2 (lower is better)
Translates to: ATFLLRTCLEVCQSL*VQEPLLPVCTKSGT
Trigger: AGTTCCAGACTTTGTGCACACAGGCAGCAGCGGTTCCTGCACCAACAGGCTCTGACAGACTTCTAAACAGGTTCTTAGCAAAAATGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR TCA 90 bp TATTTACCCACATGTAGGCATGCACACTGTATACATACTCTGGGCAGGGGTTGTGCACTGCTTGCTGAGTaGAGGAAGGGGGCCACATTT +
Preference number: 2 (lower is better)
Translates to: YLPTCRHAHCIHTLGRGCALLAE*RKGATF
Trigger: AAATGTGGCCCCCTTCCTTCACTCAGCAAGCAGTGC...ACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGCCTACATGTGGGTAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR CCA 90 bp TCTACAGCCATTTGCTTGCTTGTGTGGATGCACACACGTGTGGGGCTCAGAGGACTAAGAAAACACACTTaGTCTGCACTGCTTGCTGAG +
Preference number: 2 (lower is better)
Translates to: STAICLLVWMHTRVGLRGLRKHT*SALLAE
Trigger: CTCAGCAAGCAGTGCAGACCAAGTGTGTTTTCTTAG...TCCTCTGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp CAGAGCCTGTTGGTGCAGGAACCGCTGCTGCCTGTGTaGACAAAGTCTGGAACTCCAGGGGGCCTAAGTCAG +
Preference number: 3 (lower is better)
Translates to: QSLLVQEPLLPV*TKSGTPGGLSQ
Trigger: CTGACTTAGGCCCCCTGGAGTTCCAGACTTTGTGCACACAGGCAGCAGCGGTTCCTGCACCAACAGGCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp AAGTCTGTCAGAGCCTGTTGGTGCAGGAACCGCTGCTaGCTGTGTGCACAAAGTCTGGAACTCCAGGGGGCC +
Preference number: 3 (lower is better)
Translates to: KSVRACWCRNRC*LCAQSLELQGA
Trigger: GGCCCCCTGGAGTTCCAGACTTTGTGCACACAGGCAGCAGCGGTTCCTGCACCAACAGGCTCTGACAGACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp CACACTGTATACATACTCTGGGCAGGGGTTGTGAGCTaGCATGGTGCTCTGCAAGAGCCAGTCCCACCCCCT +
Preference number: 3 (lower is better)
Translates to: HTVYILWAGVVS*HGALQEPVPPP
Trigger: AGGGGGTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR CAA 90 bp CCCTTTCTACAGCCATTTGCTTGCTTGTGTGGATGCACACACGTGTGGGGCTCAGTCTGTCAGAGCCTGTaGGTGCAGGAACCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: PFLQPFACLCGCTHVWGSVCQSL*VQEPLL
Trigger: CAGCAGCGGTTCCTGCACCAACAGGCTCTGACAGAC...TGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR TCA 72 bp GCATGCACACTGTATACATACTCTGGGCAGGGGTTGTaGGCTGCCATGGTGCTCTGCAAGAGCCAGTCCCAC +
Preference number: 3 (lower is better)
Translates to: ACTLYTYSGQGL*AAMVLCKSQSH
Trigger: GTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp TGCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTTaGTTGCTTGTGTGGATGCACACACGTGTGGGGCTC +
Preference number: 3 (lower is better)
Translates to: CKSQSHPLSTAI*LLVWMHTRVGL
Trigger: GAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp ATACATACTCTGGGCAGGGGTTGTGAGCTGCCATGGTaGTCTGCAAGAGCCAGTCCCACCCCCTTTCTACAG +
Preference number: 3 (lower is better)
Translates to: IHTLGRGCELPW*SARASPTPFLQ
Trigger: CTGTAGAAAGGGGGTGGGACTGGCTCTTGCAGAGCACCATGGCAGCTCACAACCCCTGCCCAGAGTATGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 72 bp GGTGCAGGAACCGCTGCTGCCTGTGTGCACAAAGTCTaGAACTCCAGGGGGCCTAAGTCAGAAAAAGACAGC +
Preference number: 3 (lower is better)
Translates to: GAGTAAACVHKV*NSRGPKSEKDS
Trigger: GCTGTCTTTTTCTGACTTAGGCCCCCTGGAGTTCCAGACTTTGTGCACACAGGCAGCAGCGGTTCCTGCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp ACCCCCTTTCTACAGCCATTTGCTTGCTTGTGTGGATaGACACACGTGTGGGGCTCAGAGGATAACCTCGGC +
Preference number: 3 (lower is better)
Translates to: TPFLQPFACLCG*THVWGSEDNLG
Trigger: GCCGAGGTTATCCTCTGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR TCA 72 bp ACTGAGGCCAGGCTTGGCAGCAAGCATCTTCATTCCTaGGCCACCTTGCCTCCTCTGGATCCCTTTTCTAAG +
Preference number: 3 (lower is better)
Translates to: TEARLGSKHLHS*ATLPPLDPFSK
Trigger: CTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCCTGGCCTCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 72 bp AGGATAACCTCGGCTTCATTCTCTTCTTCCACTATTTaGGTTCCAAGGTGCGCACTGAGGCCAGGCTTGGCA +
Preference number: 3 (lower is better)
Translates to: RITSASFSSSTI*VPRCALRPGLA
Trigger: TGCCAAGCCTGGCCTCAGTGCGCACCTTGGAACCCAAATAGTGGAAGAAGAGAATGAAGCCGAGGTTATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 72 bp CAGCCATTTGCTTGCTTGTGTGGATGCACACACGTGTaGGGCTCAGAGGATAACCTCGGCTTCATTCTCTTC +
Preference number: 3 (lower is better)
Translates to: QPFACLCGCTHV*GSEDNLGFILF
Trigger: GAAGAGAATGAAGCCGAGGTTATCCTCTGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 72 bp GCACTGAAGGAGCCGGCCGTCCTTGCTTCCAGCTTCTaGCTTTACTTTTTGGGTACATTGAAGAACCGAGGT +
Preference number: 3 (lower is better)
Translates to: ALKEPAVLASSF*LYFLGTLKNRG
Trigger: ACCTCGGTTCTTCAATGTACCCAAAAAGTAAAGCCAGAAGCTGGAAGCAAGGACGGCCGGCTCCTTCAGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175929.2
3UTR-3UTR CAA 90 bp TATTTACCCACATGTAGGCATGCACACTGTATACATACTCTGGGCAGGGGTTGTCTTGGTCTGCACTGCTaGCTGAGTGAAGGAAGGGGG +
Preference number: 3 (lower is better)
Translates to: YLPTCRHAHCIHTLGRGCLGLHC*LSEGRG
Trigger: CCCCCTTCCTTCACTCAGCAAGCAGTGCAGACCAAG...ACAACCCCTGCCCAGAGTATGTATACAGTGTGCATGCCTACATGTGGGTAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR-3UTR CAA 90 bp CCACCCCCTTTCTACAGCCATTTGCTTGCTTGTGTGGATGCACACACGTGTGGGAAGGGGGCCACATTTTaGCTAAGAACCTGTTTAGAA +
Preference number: 3 (lower is better)
Translates to: PPPFYSHLLACVDAHTCGKGATF*LRTCLE
Trigger: TTCTAAACAGGTTCTTAGCAAAAATGTGGCCCCCTT...CCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR GCA 72 bp GGCTTGGCAGCAAGCATCTTCATTCCTGAGCCACCTTaGCTCCTCTGGATCCCTTTTCTAAGAAAACACACT +
Preference number: 3 (lower is better)
Translates to: GLAASIFIPEPP*LLWIPFLRKHT
Trigger: AGTGTGTTTTCTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CCA 72 bp GCAAGCATCTTCATTCCTGAGCCACCTTGCCTCCTCTaGATCCCTTTTCTAAGAAAACACACTTGGTCTGCA +
Preference number: 3 (lower is better)
Translates to: ASIFIPEPPCLL*IPFLRKHTWSA
Trigger: TGCAGACCAAGTGTGTTTTCTTAGAAAAGGGATCCAGAGGAGGCAAGGTGGCTCAGGAATGAAGATGCTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CAA 72 bp CTGCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTaGCTTGCTTGTGTGGATGCACACACGTGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: LQEPVPPPFYSH*LACVDAHTCGA
Trigger: AGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
CDS-3UTR TCA 90 bp GCAAGAGCCAGTCCCACCCCCTTTCTACAGCCATTTGCTTGCTTGTGTGGATGCACTCCTGCAGATTGCTaGAGAGCTCCCGCTTTAGGC +
Preference number: 4 (lower is better)
Translates to: ARASPTPFLQPFACLCGCTPADC*RAPALG
Trigger: GCCTAAAGCGGGAGCTCTTCAGCAATCTGCAGGAGT...GCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CAA 72 bp ACTATTTGGGTTCCAAGGTGCGCACTGAGGCCAGGCTaGGCAGCAAGCATCTTCATTCCTGAGCCACCTTGC +
Preference number: 4 (lower is better)
Translates to: TIWVPRCALRPG*AASIFIPEPPC
Trigger: GCAAGGTGGCTCAGGAATGAAGATGCTTGCTGCCAAGCCTGGCCTCAGTGCGCACCTTGGAACCCAAATAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
3UTR CAA 72 bp AAGAGCCAGTCCCACCCCCTTTCTACAGCCATTTGCTaGCTTGTGTGGATGCACACACGTGTGGGGCTCAGA +
Preference number: 4 (lower is better)
Translates to: KSQSHPLSTAIC*LVWMHTRVGLR
Trigger: TCTGAGCCCCACACGTGTGTGCATCCACACAAGCAAGCAAATGGCTGTAGAAAGGGGGTGGGACTGGCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
CDS-3UTR TCA 90 bp GAAGGAGCCGGCCGTCCTTGCTTCCAGCTTCTGGCTTTACTTTTTGGGTACATTACTCCTGCAGATTGCTaGAGAGCTCCCGCTTTAGGC +
Preference number: 4 (lower is better)
Translates to: EGAGRPCFQLLALLFGYITPADC*RAPALG
Trigger: GCCTAAAGCGGGAGCTCTTCAGCAATCTGCAGGAGT...AATGTACCCAAAAAGTAAAGCCAGAAGCTGGAAGCAAGGACGGCCGGCTCCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175929.2
CDS CCA 90 bp TTTTGCATACCCAGCTCCACATGCCTAGAAGGTTCAGCAGAAACATaGGAAACGCCACGATGCAGACCACCAGCCGCATGGCCTGGACGG +
Preference number: 5 (lower is better)
Translates to: FCIPSSTCLEGSAET*ETPRCRPPAAWPGR
Trigger: CCGTCCAGGCCATGCGGCTGGTGGTCTGCATCGTGGCGTTTCCCATGTTTCTGCTGAACCTTCTAGGCATGTGGAGCTGGGTATGCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS CCA 90 bp GGGACAAAGGGGGAGTCTCTCGATTTCCGGAGGAGTCGGGACAGCTaGCCTTCATCCTCAGCTGCTGACCACTCATCTGAAGACATTTCT +
Preference number: 5 (lower is better)
Translates to: GTKGESLDFRRSRDS*PSSSAADHSSEDIS
Trigger: AGAAATGTCTTCAGATGAGTGGTCAGCAGCTGAGGATGAAGGCCAGCTGTCCCGACTCCTCCGGAAATCGAGAGACTCCCCCTTTGTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
CDS GCA 72 bp AGCAGAGTTAGCTTCCCCGAGGGGCCGGCGAACTCCTaGAGATTGCTGAAGAGCTCCCGCTTTAGGCTCGCC +
Preference number: 6 (lower is better)
Translates to: SRVSFPEGPANS*RLLKSSRFRLA
Trigger: GGCGAGCCTAAAGCGGGAGCTCTTCAGCAATCTGCAGGAGTTCGCCGGCCCCTCGGGGAAGCTAACTCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS GCA 72 bp ATGTCCTCCCCGGCTGCCACCACGAAGCGCTCGAACTaGAGCTGCCGGTTCTCTGCGACGCTCTTGAACAAG +
Preference number: 6 (lower is better)
Translates to: MSSPAATTKRSN*SCRFSATLLNK
Trigger: CTTGTTCAAGAGCGTCGCAGAGAACCGGCAGCTGCAGTTCGAGCGCTTCGTGGTGGCAGCCGGGGAGGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS GCA 72 bp TCCCCGGCTGCCACCACGAAGCGCTCGAACTGCAGCTaGCGGTTCTCTGCGACGCTCTTGAACAAGAACTTC +
Preference number: 6 (lower is better)
Translates to: SPAATTKRSNCS*RFSATLLNKNF
Trigger: GAAGTTCTTGTTCAAGAGCGTCGCAGAGAACCGGCAGCTGCAGTTCGAGCGCTTCGTGGTGGCAGCCGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS CCA 72 bp CCCAGCTCCACATGCCTAGAAGGTTCAGCAGAAACATaGGAAACGCCACGATGCAGACCACCAGCCGCATGG +
Preference number: 6 (lower is better)
Translates to: PSSTCLEGSAET*ETPRCRPPAAW
Trigger: CCATGCGGCTGGTGGTCTGCATCGTGGCGTTTCCCATGTTTCTGCTGAACCTTCTAGGCATGTGGAGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS TCA 72 bp ACACATCCTTGGGCGGCAACCCGCACGTGGATGAGATaGAGGGACATCTTCTGCTCTCTTCTGGAATTTAGC +
Preference number: 6 (lower is better)
Translates to: THPWAATRTWMR*RDIFCSLLEFS
Trigger: GCTAAATTCCAGAAGAGAGCAGAAGATGTCCCTTCATCTCATCCACGTGCGGGTTGCCGCCCAAGGATGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075675.7
CDS GCA 72 bp AGTAGGGAAAGCACTTTTTGCATACCCAGCTCCACATaGCTAGAAGGTTCAGCAGAAACATGGGAAACGCCA +
Preference number: 6 (lower is better)
Translates to: SRESTFCIPSST*LEGSAETWETP
Trigger: TGGCGTTTCCCATGTTTCTGCTGAACCTTCTAGGCATGTGGAGCTGGGTATGCAAAAAGTGCTTTCCCTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2
CDS CCA 72 bp CCCGCTTTAGGCTCGCCATCTTCCAATTGTATATCATaGCGAACCGCTTCAGGAAGTAGGGAAAGCACTTTT +
Preference number: 6 (lower is better)
Translates to: PALGSPSSNCIS*RTASGSRESTF
Trigger: AAAAGTGCTTTCCCTACTTCCTGAAGCGGTTCGCCATGATATACAATTGGAAGATGGCGAGCCTAAAGCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075675.7
ENSMUST00000175929.2