Pregenerated sensors for MEOX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001493Ensembl transcript IDs: ENSMUST00000057054.8
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGCCCTGGGTaGGTCCAGAGATGTGAGAGGGTGGGACCGGGTGGTGGGAACTGG | + |
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Preference number: 1 (lower is better) Translates to: YWATSHLRVCAGCPG*VQRCERVGPGGGNW Trigger: CCAGTTCCCACCACCCGGTCCCACCCTCTCACATCTCTGGACCCACCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 90 bp | TGGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGTACCAAGGAATaGATTCTGCATAGGCCAGATGGGGCCAGACCCAGAGGAGACCCT | + |
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Preference number: 1 (lower is better) Translates to: WREVCFYKSPAGTKE*ILHRPDGARPRGDP Trigger: AGGGTCTCCTCTGGGTCTGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 90 bp | TCCGGAACACGCAGGATAGGTCCAAATGCATCCCATGGAGGAAGATaGGTTGTTTTCCTGTCCTTATCTGCAGTCAGAGTCCTTGGAGAA | + |
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Preference number: 1 (lower is better) Translates to: SGTRRIGPNASHGGR*VVFLSLSAVRVLGE Trigger: TTCTCCAAGGACTCTGACTGCAGATAAGGACAGGAAAACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR GCA 90 bp | GTCTTCCCACAAAGCTTTTTCCGGAACACGCAGGATAGGTCCAAATaGATCCCATGGAGGAAGATGGGTTGTTTTCCTGTCCTTATCTGC | + |
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Preference number: 1 (lower is better) Translates to: VFPQSFFRNTQDRSK*IPWRKMGCFPVLIC Trigger: GCAGATAAGGACAGGAAAACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGAAAAAGCTTTGTGGGAAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR TCA 90 bp | GTCCTTAGACACAGGAGCCACTTCCTAACCTTCAACTCAACGGTGTaGACATCTGGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGTA | + |
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Preference number: 1 (lower is better) Translates to: VLRHRSHFLTFNSTV*TSGERFAFTSHQLV Trigger: TACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATGTTCACACCGTTGAGTTGAAGGTTAGGAAGTGGCTCCTGTGTCTAAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 90 bp | ACACAGGAGCCACTTCCTAACCTTCAACTCAACGGTGTGAACATCTaGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGTACCAAGGAA | + |
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Preference number: 1 (lower is better) Translates to: TQEPLPNLQLNGVNI*REVCFYKSPAGTKE Trigger: TTCCTTGGTACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATGTTCACACCGTTGAGTTGAAGGTTAGGAAGTGGCTCCTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR TCA 90 bp | TTGCTGACCCTCCTTCTGCAACATCAGCAGGATCTGGGAGATCCACCATCTAATGTGGGTCCAGAGATGTaGGAGGGTGGGACCGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: LLTLLLQHQQDLGDPPSNVGPEM*EGGTGW Trigger: CCACCCGGTCCCACCCTCTCACATCTCTGGACCCAC...ATTAGATGGTGGATCTCCCAGATCCTGCTGATGTTGCAGAAGGAGGGTCAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CCA 90 bp | TTGCTGACCCTCCTTCTGCAACATCAGCAGGATCTGGGAGATCCACCATCTAATGGTGGGACCGGGTGGTaGGAACTGGAGAGGGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: LLTLLLQHQQDLGDPPSNGGTGW*ELERGF Trigger: GAACCCCCTCTCCAGTTCCCACCACCCGGTCCCACC...ATTAGATGGTGGATCTCCCAGATCCTGCTGATGTTGCAGAAGGAGGGTCAGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CCA 90 bp | TTGCTGACCCTCCTTCTGCAACATCAGCAGGATCTGGGAGATCCACCATCTAATAGAGATGTGAGAGGGTaGGACCGGGTGGTGGGAACT | + |
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Preference number: 2 (lower is better) Translates to: LLTLLLQHQQDLGDPPSNRDVRG*DRVVGT Trigger: AGTTCCCACCACCCGGTCCCACCCTCTCACATCTCT...ATTAGATGGTGGATCTCCCAGATCCTGCTGATGTTGCAGAAGGAGGGTCAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCGGAACACGCAGGATAGGTCCAAATGCATCCCATGGAGGAAGATGGGTTGTTGCAGTCAGAGTCCTTaGAGAACACAAGACGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: FRNTQDRSKCIPWRKMGCCSQSP*RTQDAA Trigger: TGCAGCGTCTTGTGTTCTCCAAGGACTCTGACTGCA...ACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CAA 90 bp | GAGGAAGATGGGTTGTTTTCCTGTCCTTATCTGCAGTCAGAGTCCTaGGAGAACACAAGACGCTGCAGCCTGAGAACGTTCTACTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: EEDGLFSCPYLQSES*ENTRRCSLRTFYFQ Trigger: TTGGAAGTAGAACGTTCTCAGGCTGCAGCGTCTTGTGTTCTCCAAGGACTCTGACTGCAGATAAGGACAGGAAAACAACCCATCTTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR TCA 90 bp | AGGATCTGGGAGATCCACCATCTAATACTGAGGCACACAGGGGTCTCTTCCAAGTTCAACTCAACGGTGTaGACATCTGGAGAGAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: RIWEIHHLILRHTGVSSKFNSTV*TSGERF Trigger: AAACCTCTCTCCAGATGTTCACACCGTTGAGTTGAA...CTTGGAAGAGACCCCTGTGTGCCTCAGTATTAGATGGTGGATCTCCCAGATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCCATGCAAGAAATTCAAATACTTGCTGACCCTCCTTCTGCAACATCAGCAGCCAAGGAATGGATTCTaGATAGGCCAGATGGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SPCKKFKYLLTLLLQHQQPRNGF*IGQMGP Trigger: TGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGG...CTGCTGATGTTGCAGAAGGAGGGTCAGCAAGTATTTGAATTTCTTGCATGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACTTCCTAACCTTCAACTCAACGGTGTGAACATCTGGAGAGAGGTTTGCTCCTTCAGTCTTTCTTaGTTTTGGTCTTTGGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: EPLPNLQLNGVNIWREVCSFSLS*FWSLEH Trigger: ATGCTCCAAAGACCAAAACCAAGAAAGACTGAAGGA...GCAAACCTCTCTCCAGATGTTCACACCGTTGAGTTGAAGGTTAGGAAGTGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR GCA 90 bp | GGGAAGGGAACTGGGGTTATTTTTAAACACTCACAATCAGATCTCCATGCAAGAATCTGGAGAGAGGTTTaGTTTTACAAGTCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: GKGTGVIFKHSQSDLHARIWREV*FYKSPA Trigger: AGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGAT...TCTTGCATGGAGATCTGATTGTGAGTGTTTAAAAATAACCCCAGTTCCCTTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | CAGGCTGCCCTGGGTGGGTCCAGAGATGTGAGAGGGTaGGACCGGGTGGTGGGAACTGGAGAGGGGGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: QAALGGSRDVRG*DRVVGTGEGVP Trigger: AGGAACCCCCTCTCCAGTTCCCACCACCCGGTCCCACCCTCTCACATCTCTGGACCCACCCAGGGCAGCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR GCA 72 bp | TACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTaGCCTGGGTGGGTCCAGAGATGTGAGAGGGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: YWATSHLRVCAG*PGWVQRCERVG Trigger: TCCCACCCTCTCACATCTCTGGACCCACCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR TCA 72 bp | AGGCACACAGGGGTCTCTTCCAAGGAGACTGTTGCCTaGGGCTGTTTTCCCACCAGTCCTCACAGGAGCATC | + |
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Preference number: 3 (lower is better) Translates to: RHTGVSSKETVA*GCFPTSPHRSI Trigger: GATGCTCCTGTGAGGACTGGTGGGAAAACAGCCTCAGGCAACAGTCTCCTTGGAAGAGACCCCTGTGTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR GCA 72 bp | ACTGAGGCACACAGGGGTCTCTTCCAAGGAGACTGTTaGCTGAGGCTGTTTTCCCACCAGTCCTCACAGGAG | + |
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Preference number: 3 (lower is better) Translates to: TEAHRGLFQGDC*LRLFSHQSSQE Trigger: CTCCTGTGAGGACTGGTGGGAAAACAGCCTCAGGCAACAGTCTCCTTGGAAGAGACCCCTGTGTGCCTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CAA 90 bp | ACACAGGGGTCTCTTCCAAGGAGACTGTTGCCTGAGGCTGTTTTCCCACCAGTCCTGCAGTCAGAGTCCTaGGAGAACACAAGACGCTGC | + |
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Preference number: 3 (lower is better) Translates to: TQGSLPRRLLPEAVFPPVLQSES*ENTRRC Trigger: GCAGCGTCTTGTGTTCTCCAAGGACTCTGACTGCAG...GACTGGTGGGAAAACAGCCTCAGGCAACAGTCTCCTTGGAAGAGACCCCTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR GCA 72 bp | TTTACAAGTCACCAGCTGGTACCAAGGAATGGATTCTaGATAGGCCAGATGGGGCCAGACCCAGAGGAGACC | + |
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Preference number: 3 (lower is better) Translates to: FTSHQLVPRNGF*IGQMGPDPEET Trigger: GGTCTCCTCTGGGTCTGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CAA 90 bp | CAACGGTGTGAACATCTGGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGTACAGAGAGAGTGGGAAGTaGAAGGCCTGGGGAAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: QRCEHLERGLLLQVTSWYRESGK*KAWGRG Trigger: GCCCCTTCCCCAGGCCTTCAACTTCCCACTCTCTCT...GTACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATGTTCACACCGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | GCTAAGCCTTCTGGGAAATTCAAGGCTCCCACATACTaGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: AKPSGKFKAPTY*ATSHLRVCAGC Trigger: GCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTATGTGGGAGCCTTGAATTTCCCAGAAGGCTTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | GGCCCCAGGCTCTGTTTCTATAGTTTCCCAGTCCTTTaGAGTTCAAGAGAGAGTGGGAAGTTGAAGGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GPRLCFYSFPVL*SSRESGKLKAW Trigger: CCAGGCCTTCAACTTCCCACTCTCTCTTGAACTCCAAAGGACTGGGAAACTATAGAAACAGAGCCTGGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | GTTTGCTTTTACAAGTCACCAGCTGGTACCAAGGAATaGATTCTGCATAGGCCAGATGGGGCCAGACCCAGA | + |
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Preference number: 3 (lower is better) Translates to: VCFYKSPAGTKE*ILHRPDGARPR Trigger: TCTGGGTCTGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGTAAAAGCAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CAA 90 bp | ACACAGGGGTCTCTTCCAAGGAGACTGTTGCCTGAGGCTGTTTTCCCACCAGTCTTCCTTCAGTCTTTCTaGGTTTTGGTCTTTGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: TQGSLPRRLLPEAVFPPVFLQSF*VLVFGA Trigger: TGCTCCAAAGACCAAAACCAAGAAAGACTGAAGGAA...GACTGGTGGGAAAACAGCCTCAGGCAACAGTCTCCTTGGAAGAGACCCCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | CGCAGGATAGGTCCAAATGCATCCCATGGAGGAAGATaGGTTGTTTTCCTGTCCTTATCTGCAGTCAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: RRIGPNASHGGR*VVFLSLSAVRV Trigger: GACTCTGACTGCAGATAAGGACAGGAAAACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | TTCCGGAACACGCAGGATAGGTCCAAATGCATCCCATaGAGGAAGATGGGTTGTTTTCCTGTCCTTATCTGC | + |
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Preference number: 3 (lower is better) Translates to: FRNTQDRSKCIP*RKMGCFPVLIC Trigger: GCAGATAAGGACAGGAAAACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGGGAACTGGGGTTATTTTTAAACACTCACAATCAGATCTCCATGCAAGAGAGCATCCTCAGAAGTaGGGTCTGAGATCTGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: GKGTGVIFKHSQSDLHAREHPQK*GLRSEL Trigger: CAGCTCAGATCTCAGACCCAACTTCTGAGGATGCTC...TCTTGCATGGAGATCTGATTGTGAGTGTTTAAAAATAACCCCAGTTCCCTTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CCA 72 bp | CCACTTCCTAACCTTCAACTCAACGGTGTGAACATCTaGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: PLPNLQLNGVNI*REVCFYKSPAG Trigger: ACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATGTTCACACCGTTGAGTTGAAGGTTAGGAAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGGGAACTGGGGTTATTTTTAAACACTCACAATCAGATCTCCATGCAAGACATCTGGAGAGAGGTTaGCTTTTACAAGTCACCAGC | + |
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Preference number: 3 (lower is better) Translates to: GKGTGVIFKHSQSDLHARHLERG*LLQVTS Trigger: GCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATG...TCTTGCATGGAGATCTGATTGTGAGTGTTTAAAAATAACCCCAGTTCCCTTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR TCA 72 bp | GGAAAACTGATACATGCTCTAACTTGCCATCTCATTTaGCAATCATTTTCCACAGCTTCTGTCTTGATGGGG | + |
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Preference number: 3 (lower is better) Translates to: GKLIHALTCHLI*QSFSTASVLMG Trigger: CCCCATCAAGACAGAAGCTGTGGAAAATGATTGTCAAATGAGATGGCAAGTTAGAGCATGTATCAGTTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CCA 90 bp | CACCAGCTGGTACCAAGGAATGGATTCTGCATAGGCCAGATGGGGCCAGACCCACCGGGGCAGGCTGTGTaGGGTGGCTGCCAGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: HQLVPRNGFCIGQMGPDPPGQAV*GGCQAG Trigger: TCCTGCCTGGCAGCCACCCCACACAGCCTGCCCCGG...TGGGTCTGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR TCA 90 bp | TTCCGGAACACGCAGGATAGGTCCAAATGCATCCCATGGAGGAAGATGGGTTGTCAGCTGGGCCTAGGTTaGGCCTCTGCCCGGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: FRNTQDRSKCIPWRKMGCQLGLG*ASARLL Trigger: CAGAAGCCGGGCAGAGGCTCAACCTAGGCCCAGCTG...ACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | GCTCCCACATACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGCCCTGGGTCTGAGATAGGGAAGTaGCAGTCAGGGGTCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: APTYWATSHLRVCAGCPGSEIGK*QSGVCG Trigger: CCCACAGACCCCTGACTGGCACTTCCCTATCTCAGA...CCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTATGTGGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR TCA 90 bp | CCACATACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGCCCTGGGTGGGTCTGGAACCAGACTTTaGCCTGCCGCTCAGAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: PHTGQLHTLECVQAALGGSGTRL*PAAQKG Trigger: ACCTTTCTGAGCGGCAGGTCAAAGTCTGGTTCCAGA...CCCACCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTATGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | ACAAGTCACCAGCTGGTACCAAGGAATGGATTCTGCATAGGCCAGATGGGGCCAGCTGTGTGGGGTGGCTaGCAGGCAGGAAGCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: TSHQLVPRNGFCIGQMGPAVWGG*QAGSRE Trigger: TTCTCTGCTTCCTGCCTGGCAGCCACCCCACACAGC...TGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | TTCCGGAACACGCAGGATAGGTCCAAATGCATCCCATGGAGGAAGATGGGTTGTCCATCCTCTCGGTCCTaGTCCTGTGGGGACACAGGC | + |
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Preference number: 4 (lower is better) Translates to: FRNTQDRSKCIPWRKMGCPSSRS*SCGDTG Trigger: GCCTGTGTCCCCACAGGAGCAGGACCGAGAGGATGG...ACAACCCATCTTCCTCCATGGGATGCATTTGGACCTATCCTGCGTGTTCCGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR TCA 90 bp | CCACATACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGCCCTGGGTGGGCAGAAAGGTCCAGGTTaGCTGCAATCTCATATCTCC | + |
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Preference number: 4 (lower is better) Translates to: PHTGQLHTLECVQAALGGQKGPG*LQSHIS Trigger: GGAGATATGAGATTGCAGTCAACCTGGACCTTTCTG...CCCACCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTCACCAGCTGGTACCAAGGAATGGATTCTGCATAGGCCAGATGGGGCCACTGCTATCTTCTGAGTaGGGGTTTCGAAGGCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: TSHQLVPRNGFCIGQMGPLLSSE*GFRRQP Trigger: GGGCTGCCTTCGAAACCCCCACTCAGAAGATAGCAG...TGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR TCA 90 bp | TTGCTGACCCTCCTTCTGCAACATCAGCAGGATCTGGGAGATCCACCATCTAATGTAGCTGCTCCTTGGTaGAGGCTGTCCTCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LLTLLLQHQQDLGDPPSNVAAPW*RLSSPS Trigger: GGAAGGAGAGGACAGCCTTCACCAAGGAGCAGCTAC...ATTAGATGGTGGATCTCCCAGATCCTGCTGATGTTGCAGAAGGAGGGTCAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | CACCAGCTGGTACCAAGGAATGGATTCTGCATAGGCCAGATGGGGCCAGACCCAAAGGTCCAGGTTGACTaGAATCTCATATCTCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: HQLVPRNGFCIGQMGPDPKVQVD*NLISPE Trigger: CTCCGGAGATATGAGATTGCAGTCAACCTGGACCTT...TGGGTCTGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CAA 72 bp | TTTTCCCACCAGTCCTCACAGGAGCATCCTCAGAAGTaGGGTCTGAGATCTGAGCTGCGCATGTGTGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: FSHQSSQEHPQK*GLRSELRMCVN Trigger: GTTCACACACATGCGCAGCTCAGATCTCAGACCCAACTTCTGAGGATGCTCCTGTGAGGACTGGTGGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | CAACGGTGTGAACATCTGGAGAGAGGTTTGCTTTTACAAGTCACCAGCTGGTACTCCAGCTCCCGTAGCTaGTCCTTGGTGAAGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: QRCEHLERGLLLQVTSWYSSSRS*SLVKAV Trigger: GACAGCCTTCACCAAGGAGCAGCTACGGGAGCTGGA...GTACCAGCTGGTGACTTGTAAAAGCAAACCTCTCTCCAGATGTTCACACCGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGGAACTGGGGTTATTTTTAAACACTCACAATCAGATCTCCATGCAAGAGCAGGCTGTGTGGGGTaGCTGCCAGGCAGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GKGTGVIFKHSQSDLHARAGCVG*LPGRKQ Trigger: CTGCTTCCTGCCTGGCAGCCACCCCACACAGCCTGC...TCTTGCATGGAGATCTGATTGTGAGTGTTTAAAAATAACCCCAGTTCCCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CCA 90 bp | TCTCCATGCAAGAAATTCAAATACTTGCTGACCCTCCTTCTGCAACATCAGCAGCCAGTCAGGGGTCTGTaGGAAGGCAGGATGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SPCKKFKYLLTLLLQHQQPVRGL*EGRMLL Trigger: GAGCAGCATCCTGCCTTCCCACAGACCCCTGACTGG...CTGCTGATGTTGCAGAAGGAGGGTCAGCAAGTATTTGAATTTCTTGCATGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CAA 72 bp | GGGTTGTTTTCCTGTCCTTATCTGCAGTCAGAGTCCTaGGAGAACACAAGACGCTGCAGCCTGAGAACGTTC | + |
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Preference number: 4 (lower is better) Translates to: GLFSCPYLQSES*ENTRRCSLRTF Trigger: GAACGTTCTCAGGCTGCAGCGTCTTGTGTTCTCCAAGGACTCTGACTGCAGATAAGGACAGGAAAACAACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR GCA 90 bp | TCTCCATGCAAGAAATTCAAATACTTGCTGACCCTCCTTCTGCAACATCAGCAGTCTCCTTCCGGGCTTTaGTGCTGCCTTCTGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPCKKFKYLLTLLLQHQQSPSGL*CCLLAS Trigger: GGAAGCCAGAAGGCAGCAGCAAAGCCCGGAAGGAGA...CTGCTGATGTTGCAGAAGGAGGGTCAGCAAGTATTTGAATTTCTTGCATGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CCA 90 bp | TCTCCATGCAAGAAATTCAAATACTTGCTGACCCTCCTTCTGCAACATCAGCAGTTTGCTGCTGCCTTCTaGCTTCCCTCCTCCGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SPCKKFKYLLTLLLQHQQFAAAF*LPSSVL Trigger: GAGAACGGAGGAGGGAAGCCAGAAGGCAGCAGCAAA...CTGCTGATGTTGCAGAAGGAGGGTCAGCAAGTATTTGAATTTCTTGCATGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| 3UTR CAA 72 bp | CTCACAATCAGATCTCCATGCAAGAAATTCAAATACTaGCTGACCCTCCTTCTGCAACATCAGCAGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: LTIRSPCKKFKY*LTLLLQHQQDL Trigger: CAGATCCTGCTGATGTTGCAGAAGGAGGGTCAGCAAGTATTTGAATTTCTTGCATGGAGATCTGATTGTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CAA 90 bp | CTTAGAGTGTGTGCAGGCTGCCCTGGGTGGGTCCAGAGATGTGAGAGGGTGGGACCAGCTGGGCCTAGGTaGAGCCTCTGCCCGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LRVCAGCPGWVQRCERVGPAGPR*SLCPAS Trigger: AGAAGCCGGGCAGAGGCTCAACCTAGGCCCAGCTGG...TCCCACCCTCTCACATCTCTGGACCCACCCAGGGCAGCCTGCACACACTCTAAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS CCA 90 bp | AGGATGCTGCTCGTTGAAGATTCGCTCAGTCCGGGGCAGGCTGTGTaGGGTGGCTGCCAGGCAGGAAGCAGAGAAGTCGGGGTATGCTGC | + |
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Preference number: 5 (lower is better) Translates to: RMLLVEDSLSPGQAV*GGCQAGSREVGVCC Trigger: GCAGCATACCCCGACTTCTCTGCTTCCTGCCTGGCAGCCACCCCACACAGCCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 90 bp | GCTGGGCCTAGGTTGAGCCTCTGCCCGGCTTCTGAGATAGGGAAGTaGCAGTCAGGGGTCTGTGGGAAGGCAGGATGCTGCTCGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: AGPRLSLCPASEIGK*QSGVCGKAGCCSLK Trigger: CTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACTGGCACTTCCCTATCTCAGAAGCCGGGCAGAGGCTCAACCTAGGCCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 90 bp | TCTGAGATAGGGAAGTGCCAGTCAGGGGTCTGTGGGAAGGCAGGATaGTGCTCGTTGAAGATTCGCTCAGTCCGGGGCAGGCTGTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: SEIGKCQSGVCGKAG*CSLKIRSVRGRLCG Trigger: CCCACACAGCCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACTGGCACTTCCCTATCTCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CAA 90 bp | GCTCCCACATACTGGGCAACTTCACACCTTAGAGTGTGTGCAGGCTGCCCTGGGCTCTCCTTCCGGGCTTaGCTGCTGCCTTCTGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: APTYWATSHLRVCAGCPGLSFRA*LLPSGF Trigger: GAAGCCAGAAGGCAGCAGCAAAGCCCGGAAGGAGAG...CCCAGGGCAGCCTGCACACACTCTAAGGTGTGAAGTTGCCCAGTATGTGGGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 90 bp | TGGATGATTTCTTCTCCGTCTCATTGGCGATCGTCCCAAGTACCATaGAATCCTCCCCCAATCCTGCTGTGCCATCCACCAGGCCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: WMISSPSHWRSSQVP*NPPPILLCHPPGRG Trigger: GCCCCGGCCTGGTGGATGGCACAGCAGGATTGGGGGAGGATTGCATGGTACTTGGGACGATCGCCAATGAGACGGAGAAGAAATCATCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CAA 90 bp | GGGAAGGGAACTGGGGTTATTTTTAAACACTCACAATCAGATCTCCATGCAAGATCCCGTAGCTGCTCCTaGGTGAAGGCTGTCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GKGTGVIFKHSQSDLHARSRSCS*VKAVLS Trigger: GGAGAGGACAGCCTTCACCAAGGAGCAGCTACGGGA...TCTTGCATGGAGATCTGATTGTGAGTGTTTAAAAATAACCCCAGTTCCCTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS-3UTR CAA 90 bp | ACAAGTCACCAGCTGGTACCAAGGAATGGATTCTGCATAGGCCAGATGGGGCCATCAGAAAGGTCCAGGTaGACTGCAATCTCATATCTC | + |
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Preference number: 5 (lower is better) Translates to: TSHQLVPRNGFCIGQMGPSERSR*TAISYL Trigger: GAGATATGAGATTGCAGTCAACCTGGACCTTTCTGA...TGGCCCCATCTGGCCTATGCAGAATCCATTCCTTGGTACCAGCTGGTGACTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | CCCCCAATCCTGCTGTGCCATCCACCAGGCCGGGGCTaGCGGCTCCCATCTCCCTGGCGCTCCCAGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: PPILLCHPPGRG*RLPSPWRSQLG Trigger: GCCCAGCTGGGAGCGCCAGGGAGATGGGAGCCGGCAGCCCCGGCCTGGTGGATGGCACAGCAGGATTGGGGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | GATCGTCCCAAGTACCATGCAATCCTCCCCCAATCCTaGTGTGCCATCCACCAGGCCGGGGCTGCCGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: DRPKYHAILPQS*CAIHQAGAAGS Trigger: GGAGCCGGCAGCCCCGGCCTGGTGGATGGCACAGCAGGATTGGGGGAGGATTGCATGGTACTTGGGACGATC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS TCA 72 bp | AGTCAGGGGTCTGTGGGAAGGCAGGATGCTGCTCGTTaGAGATTCGCTCAGTCCGGGGCAGGCTGTGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SQGSVGRQDAAR*RFAQSGAGCVG Trigger: CCCCACACAGCCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | GGGAAGTGCCAGTCAGGGGTCTGTGGGAAGGCAGGATaGTGCTCGTTGAAGATTCGCTCAGTCCGGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GKCQSGVCGKAG*CSLKIRSVRGR Trigger: CCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACTGGCACTTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS CAA 72 bp | CAGTCAGGGGTCTGTGGGAAGGCAGGATGCTGCTCGTaGAAGATTCGCTCAGTCCGGGGCAGGCTGTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: QSGVCGKAGCCS*KIRSVRGRLCG Trigger: CCCACACAGCCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | AAGTGCCAGTCAGGGGTCTGTGGGAAGGCAGGATGCTaGTCGTTGAAGATTCGCTCAGTCCGGGGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: KCQSGVCGKAGC*SLKIRSVRGRL Trigger: CAGCCTGCCCCGGACTGAGCGAATCTTCAACGAGCAGCATCCTGCCTTCCCACAGACCCCTGACTGGCACTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | AGGTTGAGCCTCTGCCCGGCTTCTGAGATAGGGAAGTaGCAGTCAGGGGTCTGTGGGAAGGCAGGATGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RLSLCPASEIGK*QSGVCGKAGCC Trigger: GCAGCATCCTGCCTTCCCACAGACCCCTGACTGGCACTTCCCTATCTCAGAAGCCGGGCAGAGGCTCAACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | TCTTCTCCGTCTCATTGGCGATCGTCCCAAGTACCATaGAATCCTCCCCCAATCCTGCTGTGCCATCCACCA | + |
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Preference number: 6 (lower is better) Translates to: SSPSHWRSSQVP*NPPPILLCHPP Trigger: TGGTGGATGGCACAGCAGGATTGGGGGAGGATTGCATGGTACTTGGGACGATCGCCAATGAGACGGAGAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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| CDS GCA 72 bp | GACTTTGACCTGCCGCTCAGAAAGGTCCAGGTTGACTaGAATCTCATATCTCCGGAGCCGGGTCAGGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: DFDLPLRKVQVD*NLISPEPGQVV Trigger: AACTACCTGACCCGGCTCCGGAGATATGAGATTGCAGTCAACCTGGACCTTTCTGAGCGGCAGGTCAAAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057054.8 |
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