RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MEN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024947

Ensembl transcript IDs: ENSMUST00000056391.15, ENSMUST00000078137.12, ENSMUST00000079327.12, ENSMUST00000113500.8, ENSMUST00000113501.8, ENSMUST00000113502.10, ENSMUST00000113503.10, ENSMUST00000113504.10, ENSMUST00000166909.2, ENSMUST00000170132.2, ENSMUST00000170292.2, ENSMUST00000237909.2

Found 369 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACAGGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTaGGACCTCAGGGAGGTTCCCAGAGGGCTGGAAGAGGTCCTGCTC +
Preference number: 1 (lower is better)
Translates to: NRKRLALPHPVQISS*DLREVPRGLEEVLL
Trigger: GAGCAGGACCTCTTCCAGCCCTCTGGGAACCTCCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCCTGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR GCA 90 bp GGGGTAAGGGATTTGGATTCCCAAAGGATGGAACTCTATATAAAGTaGGGAAATCTACCCCTAGGGACTGAATGGTCCTTGGTTTCCAGG +
Preference number: 1 (lower is better)
Translates to: GVRDLDSQRMELYIK*GNLPLGTEWSLVSR
Trigger: CCTGGAAACCAAGGACCATTCAGTCCCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAATCCCTTACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGAAGCCTGCTGGGAGTaGGGGCAGGCCTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: LEEVLLCSCASLVRKGAREACWE*GQAWGL
Trigger: AAGGCCCCAGGCCTGCCCTCACTCCCAGCAGGCTTC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
3UTR-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCCTACTGTTCAGGCGTaGCTTGGGCTCCTGTCATGG +
Preference number: 2 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGPTVQA*LGLLSW
Trigger: CCATGACAGGAGCCCAAGTCACGCCTGAACAGTAGG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAAGGCTCCTAGTCACTaGAGGACAGCTCTGGGTCCC +
Preference number: 2 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGKAPSH*RTALGP
Trigger: GGGACCCAGAGCTGTCCTGCAGTGACTAGGAGCCTT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGCCGGCTGGTGGGGATaGCACCTACATTCTAAGAAC +
Preference number: 2 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGAGWWG*HLHSKN
Trigger: GTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAGGTTCCCAGAGGGCTaGAAGAGGTCCTGCTCTGTT +
Preference number: 2 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRFPEG*KRSCSV
Trigger: AACAGAGCAGGACCTCTTCCAGCCCTCTGGGAACCT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGAAGCCTGCTGGGAGTaGGGGCAGGCCTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: CRTALGPLGLRAESRLELEACWE*GQAWGL
Trigger: AAGGCCCCAGGCCTGCCCTCACTCCCAGCAGGCTTC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
3UTR-3UTR TCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGAAGCCTGCTGGGAGTaGGGGCAGGCCTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGEACWE*GQAWGL
Trigger: AAGGCCCCAGGCCTGCCCTCACTCCCAGCAGGCTTC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAATCTAGCCCCCAAGTaGGAGGAATGCCCTACTGTT +
Preference number: 2 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGNLAPK*EECPTV
Trigger: AACAGTAGGGCATTCCTCCCACTTGGGGGCTAGATT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAAGGCTCCTAGTCACTaGAGGACAGCTCTGGGTCCC +
Preference number: 2 (lower is better)
Translates to: LEEVLLCSCASLVRKGARKAPSH*RTALGP
Trigger: GGGACCCAGAGCTGTCCTGCAGTGACTAGGAGCCTT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
3UTR-3UTR TCA 90 bp AAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGGAAGCCTGCTGGGAGTaGGGGCAGGCCTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: KSRSFMSCTQGILRTEPGEACWE*GQAWGL
Trigger: AAGGCCCCAGGCCTGCCCTCACTCCCAGCAGGCTTC...CCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
3UTR-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGCCGGCTGGTGGGGATaGCACCTACATTCTAAGAAC +
Preference number: 2 (lower is better)
Translates to: LEEVLLCSCASLVRKGARAGWWG*HLHSKN
Trigger: GTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAAGGCTCCTAGTCACTaGAGGACAGCTCTGGGTCCC +
Preference number: 2 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGKAPSH*RTALGP
Trigger: GGGACCCAGAGCTGTCCTGCAGTGACTAGGAGCCTT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCCTACTGTTCAGGCGTaGCTTGGGCTCCTGTCATGG +
Preference number: 2 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRPTVQA*LGLLSW
Trigger: CCATGACAGGAGCCCAAGTCACGCCTGAACAGTAGG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAAGGCTCCTAGTCACTaGAGGACAGCTCTGGGTCCC +
Preference number: 2 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRKAPSH*RTALGP
Trigger: GGGACCCAGAGCTGTCCTGCAGTGACTAGGAGCCTT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTACATTCTAAGAACTaGGCCAGGGCTCTGGGGCCT +
Preference number: 2 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLHSKN*ARALGP
Trigger: AGGCCCCAGAGCCCTGGCTCAGTTCTTAGAATGTAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGCCGGCTGGTGGGGATaGCACCTACATTCTAAGAAC +
Preference number: 2 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRAGWWG*HLHSKN
Trigger: GTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAATCTAGCCCCCAAGTaGGAGGAATGCCCTACTGTT +
Preference number: 2 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRNLAPK*EECPTV
Trigger: AACAGTAGGGCATTCCTCCCACTTGGGGGCTAGATT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR CCA 72 bp AGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTaGGACCTCAGGGAGGTTCCCAGAGGGCTGGAAGAG +
Preference number: 3 (lower is better)
Translates to: RLALPHPVQISS*DLREVPRGLEE
Trigger: CTCTTCCAGCCCTCTGGGAACCTCCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGGTCCTGCTCTGTTCTaGCGCCAGTTTGGTCAGGAA +
Preference number: 3 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGGPALF*RQFGQE
Trigger: TTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR TCA 72 bp ACTCTATATAAAGTGCGGAAATCTACCCCTAGGGACTaGATGGTCCTTGGTTTCCAGGTAGCAACTGTGCTC +
Preference number: 3 (lower is better)
Translates to: TLYKVRKSTPRD*MVLGFQVATVL
Trigger: GAGCACAGTTGCTACCTGGAAACCAAGGACCATTCAGTCCCTAGGGGTAGATTTCCGCACTTTATATAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGGTGCGGGGCTGGGCTaGAAGGTGAGCTCCGGCACG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGGAGLG*KVSSGT
Trigger: CGTGCCGGAGCTCACCTTCCAGCCCAGCCCCGCACC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGGCTGGGCTGGAAGGTaGGCTCCGGCACGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGGWAGR*APARWW
Trigger: CCACCAACGTGCCGGAGCTCACCTTCCAGCCCAGCC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGWVPWA*SPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAACCTTGGCCCTGGGTaGCCTGGGCTTGCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGNLGPG*PGLAPQ
Trigger: CTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTGGGGGTGGCGATGCTaGAGGTGCTGGAGCCTGAGC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGWGWRC*RCWSLS
Trigger: GCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGCAGAACCTTGGCCCTaGGTGCCCTGGGCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGAEPWP*VPWACS
Trigger: GGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGCGGATCTGAGCGGTaGATCGGGCATAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRGSER*IGHRGQ
Trigger: CTGCCCTCTATGCCCGATTCACCGCTCAGATCCGCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCAGCCACACCGGCATTaGCTGTCTGGCCTCTGCGGT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGQPHRH*LSGLCG
Trigger: ACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCCTTGTGATAAAGGGTaGGTGGGTCTGGCCGGCCCG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGPCDKG*VGLAGP
Trigger: CGGGCCGGCCAGACCCACTCACCCTTTATCACAAGG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGCAGGTGCTGGAGCCTaGGCAGCATTGCCGACTTCC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGAGAGA*AALPTS
Trigger: GGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGTGTCGGCCCAGGCCTaGAGGGCTTCGCGCACATTT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGVSAQA*RASRTF
Trigger: AAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACAC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGTGATAAAGGGTGAGTaGGTCTGGCCGGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGVIKGE*VWPARG
Trigger: ACCCCGGGCCGGCCAGACCCACTCACCCTTTATCAC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTGGAGAGCAGAACCTTaGCCCTGGGTGCCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGWRAEP*PWVPWA
Trigger: AGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCTGGAAAGTGAGCACTaGGCCCTCTGGGGGTGGCGA +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLESEH*ALWGWR
Trigger: TCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGPDGHL*DPEPGR
Trigger: CCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGTCACCTCAGCTGTCTaGTCCCCGTTGGGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGVTSAV*SPLGPN
Trigger: GTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGAC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGGTCCTCGTTGCCTTTaGCGTGCCACGTCACCTCAG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGGPRCL*RATSPQ
Trigger: CTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGGGCCCTTGTCCAATaGAGGCTTCTTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRALVQ*RLLGWW
Trigger: CCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRCCRC*SLSSIA
Trigger: GGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGGCTGGGCTGGAAGGTaGGCTCCGGCACGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARGWAGR*APARWW
Trigger: CCACCAACGTGCCGGAGCTCACCTTCCAGCCCAGCC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGSLPLP*HVTSAV
Trigger: GACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAAGGGTGAGTGGGTCTaGCCGGCCCGGGGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARKGEWV*PARGRL
Trigger: GAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAGGCTTCTTGGGTGGTaGTGGCTCCTCAGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRLLGW*WLLRLG
Trigger: TCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARWVPWA*SPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAAGCGGCCTAGGGACTaGACAAGGAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGKRPRD*TRKVAQ
Trigger: CTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGGTGCGGGGCTGGGCTaGAAGGTGAGCTCCGGCACG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWGAGLG*KVSSGT
Trigger: CGTGCCGGAGCTCACCTTCCAGCCCAGCCCCGCACC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGGTGCGGGGCTGGGCTaGAAGGTGAGCTCCGGCACG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELGAGLG*KVSSGT
Trigger: CGTGCCGGAGCTCACCTTCCAGCCCAGCCCCGCACC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACCACCGGGAAGTAGGTaGGGCCACCAGGAGGGTCGG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELPPGSR*GHQEGR
Trigger: CCGACCCTCCTGGTGGCCTCACCTACTTCCCGGTGG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCGCGGATCTGAGCGGTaGATCGGGCATAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRGSER*IGHRGQ
Trigger: CTGCCCTCTATGCCCGATTCACCGCTCAGATCCGCG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCAGCCACACCGGCATTaGCTGTCTGGCCTCTGCGGT +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARQPHRH*LSGLCG
Trigger: ACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCCTTGTGATAAAGGGTaGGTGGGTCTGGCCGGCCCG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARPCDKG*VGLAGP
Trigger: CGGGCCGGCCAGACCCACTCACCCTTTATCACAAGG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCAC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLSAQL*SKQAHH
Trigger: GTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLHLRL*RELQLD
Trigger: ATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGGTGCGGGGCTGGGCTaGAAGGTGAGCTCCGGCACG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGGAGLG*KVSSGT
Trigger: CGTGCCGGAGCTCACCTTCCAGCCCAGCCCCGCACC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTCAGACAGGGCCAGATaGACATCTCTGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGSDRAR*TSLRPR
Trigger: TCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAAGGGTGAGTGGGTCTaGCCGGCCCGGGGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWKGEWV*PARGRL
Trigger: GAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAAGGGTGAGTGGGTCTaGCCGGCCCGGGGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELKGEWV*PARGRL
Trigger: GAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTGGAAAGTGAGCACTaGGCCCTCTGGGGGTGGCGA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLESEH*ALWGWR
Trigger: TCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGTCACCTCAGCTGTCTaGTCCCCGTTGGGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARVTSAV*SPLGPN
Trigger: GTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGAC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGGTCCTCGTTGCCTTTaGCGTGCCACGTCACCTCAG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARGPRCL*RATSPQ
Trigger: CTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELWVPWA*SPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWWVPWA*SPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAACCTTGGCCCTGGGTaGCCTGGGCTTGCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWNLGPG*PGLAPQ
Trigger: CTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAACCTTGGCCCTGGGTaGCCTGGGCTTGCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELNLGPG*PGLAPQ
Trigger: CTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCGGGCCCTTGTCCAATaGAGGCTTCTTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRALVQ*RLLGWW
Trigger: CCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTGGGGGTGGCGATGCTaGAGGTGCTGGAGCCTGAGC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWWGWRC*RCWSLS
Trigger: GCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATGGGGGTGGCGATGCTaGAGGTGCTGGAGCCTGAGC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELWGWRC*RCWSLS
Trigger: GCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTTCTTCATCTGCACTTaGGACTGTGCCGTGAGTTGC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGFFICT*DCAVSC
Trigger: GCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTGTCTGCTCCCCGTTaGGCCCAAACACCACCCAAG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLSAPR*AQTPPK
Trigger: CTTGGGTGGTGTTTGGGCCCAACGGGGAGCAGACAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAAGGGTGAGTGGGTCTaGCCGGCCCGGGGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGKGEWV*PARGRL
Trigger: GAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGCAGAACCTTGGCCCTaGGTGCCCTGGGCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWAEPWP*VPWACS
Trigger: GGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGCAGAACCTTGGCCCTaGGTGCCCTGGGCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELAEPWP*VPWACS
Trigger: GGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACGCGGATCTGAGCGGTaGATCGGGCATAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRGSER*IGHRGQ
Trigger: CTGCCCTCTATGCCCGATTCACCGCTCAGATCCGCG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCAGCCACACCGGCATTaGCTGTCTGGCCTCTGCGGT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWQPHRH*LSGLCG
Trigger: ACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACCTTGTGATAAAGGGTaGGTGGGTCTGGCCGGCCCG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELPCDKG*VGLAGP
Trigger: CGGGCCGGCCAGACCCACTCACCCTTTATCACAAGG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGCAGGTGCTGGAGCCTaGGCAGCATTGCCGACTTCC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWAGAGA*AALPTS
Trigger: GGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCAC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLSAQL*SKQAHH
Trigger: GTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSLPLP*HVTSAV
Trigger: GACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGTGTCGGCCCAGGCCTaGAGGGCTTCGCGCACATTT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWVSAQA*RASRTF
Trigger: AAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACAC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGTGTCGGCCCAGGCCTaGAGGGCTTCGCGCACATTT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELVSAQA*RASRTF
Trigger: AAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACAC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARDCAVS*SLMALE
Trigger: CTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGTGATAAAGGGTGAGTaGGTCTGGCCGGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWVIKGE*VWPARG
Trigger: ACCCCGGGCCGGCCAGACCCACTCACCCTTTATCAC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGTGATAAAGGGTGAGTaGGTCTGGCCGGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELVIKGE*VWPARG
Trigger: ACCCCGGGCCGGCCAGACCCACTCACCCTTTATCAC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATGGAGAGCAGAACCTTaGCCCTGGGTGCCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELWRAEP*PWVPWA
Trigger: AGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCGTGCAGTACTGGTGTaGGGCTACCCTCCTCCCATT +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRAVLV*GYPPPI
Trigger: AATGGGAGGAGGGTAGCCCCACACCAGTACTGCACG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTGGAAAGTGAGCACTaGGCCCTCTGGGGGTGGCGA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLESEH*ALWGWR
Trigger: TCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAGAGTGTGTAGTCGCTaGGTGTGGACACTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRVCSR*VWTLSV
Trigger: AACAGAAAGTGTCCACACCCAGCGACTACACACTCT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGCGGATCTGAGCGGTaGATCGGGCATAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRGSER*IGHRGQ
Trigger: CTGCCCTCTATGCCCGATTCACCGCTCAGATCCGCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELPDGHL*DPEPGR
Trigger: CCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWPDGHL*DPEPGR
Trigger: CCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGCAGGTGCTGGAGCCTaGGCAGCATTGCCGACTTCC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGAGAGA*AALPTS
Trigger: GGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCAC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLSAQL*SKQAHH
Trigger: GTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGTCACCTCAGCTGTCTaGTCCCCGTTGGGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWVTSAV*SPLGPN
Trigger: GTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGAC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGGTCCTCGTTGCCTTTaGCGTGCCACGTCACCTCAG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWGPRCL*RATSPQ
Trigger: CTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGGTCCTCGTTGCCTTTaGCGTGCCACGTCACCTCAG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELGPRCL*RATSPQ
Trigger: CTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTCTGCGGTCCTCGTTaGCTTTGCCGTGCCACGTCA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLCGPR*LCRATS
Trigger: TGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTCTGCGGTCCTCGTTaGCTTTGCCGTGCCACGTCA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLCGPR*LCRATS
Trigger: TGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGTGTCGGCCCAGGCCTaGAGGGCTTCGCGCACATTT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGVSAQA*RASRTF
Trigger: AAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACAC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCCTCCCATTTGCAGATaGCATCATAAAATCGCAGCA +
Preference number: 4 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGPPICR*HHKIAA
Trigger: TGCTGCGATTTTATGATGGCATCTGCAAATGGGAGG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACGGGCCCTTGTCCAATaGAGGCTTCTTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRALVQ*RLLGWW
Trigger: CCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTGTCTGCTCCCCGTTaGGCCCAAACACCACCCAAG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLSAPR*AQTPPK
Trigger: CTTGGGTGGTGTTTGGGCCCAACGGGGAGCAGACAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACCGGCATTGACTGTCTaGCCTCTGCGGTCCTCGTTG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELPALTV*PLRSSL
Trigger: CAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGTGATAAAGGGTGAGTaGGTCTGGCCGGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGVIKGE*VWPARG
Trigger: ACCCCGGGCCGGCCAGACCCACTCACCCTTTATCAC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTGGAGAGCAGAACCTTaGCCCTGGGTGCCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGWRAEP*PWVPWA
Trigger: AGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRCCRC*SLSSIA
Trigger: GGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWRCCRC*SLSSIA
Trigger: GGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTGGAAAGTGAGCACTaGGCCCTCTGGGGGTGGCGA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLESEH*ALWGWR
Trigger: TCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAACACCACCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARNTTQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGTCACCTCAGCTGTCTaGTCCCCGTTGGGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGVTSAV*SPLGPN
Trigger: GTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGAC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSLPLP*HVTSAV
Trigger: GACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGGTCCTCGTTGCCTTTaGCGTGCCACGTCACCTCAG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGGPRCL*RATSPQ
Trigger: CTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTCTGCGGTCCTCGTTaGCTTTGCCGTGCCACGTCA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLCGPR*LCRATS
Trigger: TGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGGGCCCTTGTCCAATaGAGGCTTCTTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRALVQ*RLLGWW
Trigger: CCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELDCAVS*SLMALE
Trigger: CTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWDCAVS*SLMALE
Trigger: CTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAACTATGTGCACCTTCTaGCGCACCTGGGCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELTMCTF*RTWACS
Trigger: GGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSRLTM*TFCRTW
Trigger: CCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAAGCTGAAGAGGGACTaGATGTGGGCCCGGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWKLKRD*MWARSL
Trigger: CAAGGACCGGGCCCACATCCAGTCCCTCTTCAGCTT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTCAGACAGGGCCAGATaGACATCTCTGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSDRAR*TSLRPR
Trigger: TCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTGTCTGCTCCCCGTTaGGCCCAAACACCACCCAAG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLSAPR*AQTPPK
Trigger: CTTGGGTGGTGTTTGGGCCCAACGGGGAGCAGACAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCCGGCATTGACTGTCTaGCCTCTGCGGTCCTCGTTG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGPALTV*PLRSSL
Trigger: CAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACGTGCAGTACTGGTGTaGGGCTACCCTCCTCCCATT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRAVLV*GYPPPI
Trigger: AATGGGAGGAGGGTAGCCCCACACCAGTACTGCACG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAGGCTTCTTGGGTGGTaGTGGCTCCTCAGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELRLLGW*WLLRLG
Trigger: TCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAGGCTTCTTGGGTGGTaGTGGCTCCTCAGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWRLLGW*WLLRLG
Trigger: TCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATGCAGGCTTCTTGGGTaGTGGTGGCTCCTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELCRLLG*WWLLRL
Trigger: AAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTGCAGGCTTCTTGGGTaGTGGTGGCTCCTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWCRLLG*WWLLRL
Trigger: AAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRCCRC*SLSSIA
Trigger: GGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp AGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGCTCTGGGGCCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCC +
Preference number: 4 (lower is better)
Translates to: SFMSCTQGILRTEPGLWGRCCRC*SLSSIA
Trigger: GGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCG...GCCCCAGAGCCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp AAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGGCAGGTGCTGGAGCCTaGGCAGCATTGCCGACTTCC +
Preference number: 4 (lower is better)
Translates to: KSRSFMSCTQGILRTEPGAGAGA*AALPTS
Trigger: GGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGC...CCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAGCCAGCTCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSQLQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGAGCTGGCT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113501.8
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTGACAGCCAGGAAATaGTCCACGAAGCCCAGGACC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLTARK*STKPRT
Trigger: GGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSLPLP*HVTSAV
Trigger: GACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAGCCAGAGCAGCTTCTaGTGTAGTTGCAACAGTTCC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSQSSF*CSCNSS
Trigger: GGAACTGTTGCAACTACAGCAGAAGCTGCTCTGGCT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAAGCGGCCTAGGGACTaGACAAGGAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELKRPRD*TRKVAQ
Trigger: CTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSRLTM*TFCRTC
Trigger: ACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSRLTM*TFCRTC
Trigger: ACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGDCAVS*SLMALE
Trigger: CTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGTGCAGTACTGGTGTaGGGCTACCCTCCTCCCATT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRAVLV*GYPPPI
Trigger: AATGGGAGGAGGGTAGCCCCACACCAGTACTGCACG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAGGCTTCTTGGGTGGTaGTGGCTCCTCAGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRLLGW*WLLRLG
Trigger: TCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTGCAGGCTTCTTGGGTaGTGGTGGCTCCTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGCRLLG*WWLLRL
Trigger: AAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAACACCACCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWNTTQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAACACCACCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELNTTQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSKESV*RSMEGL
Trigger: CAACCCTTCCATCGATCTTCACACTGACTCTTTGGA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAAGCGGCCTAGGGACTaGACAAGGAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGKRPRD*TRKVAQ
Trigger: CTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSRLTM*TFCRTC
Trigger: ACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELLHLRL*RELQLD
Trigger: ATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWLHLRL*RELQLD
Trigger: ATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCAGACAGGGCCAGATaGACATCTCTGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSDRAR*TSLRPR
Trigger: TCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATCAGACAGGGCCAGATaGACATCTCTGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSDRAR*TSLRPR
Trigger: TCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAGAGTGTGTAGTCGCTaGGTGTGGACACTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRVCSR*VWTLSV
Trigger: AACAGAAAGTGTCCACACCCAGCGACTACACACTCT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAACACCACCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGNTTQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAGCCAGAGCAGCTTCTaGTGTAGTTGCAACAGTTCC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSQSSF*CSCNSS
Trigger: GGAACTGTTGCAACTACAGCAGAAGCTGCTCTGGCT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAGCCAGAGCAGCTTCTaGTGTAGTTGCAACAGTTCC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSQSSF*CSCNSS
Trigger: GGAACTGTTGCAACTACAGCAGAAGCTGCTCTGGCT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLHLRL*RELQLD
Trigger: ATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTCTTCATCTGCACTTaGGACTGTGCCGTGAGTTGC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELFFICT*DCAVSC
Trigger: GCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTGTAGTCGCTGGGTGTaGACACTTTCTGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARCSRWV*TLSVSS
Trigger: TGAAGAAACAGAAAGTGTCCACACCCAGCGACTACA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGGCTGGGCTGGAAGGTaGGCTCCGGCACGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRGWAGR*APARWW
Trigger: CCACCAACGTGCCGGAGCTCACCTTCCAGCCCAGCC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCCACCGGGAAGTAGGTaGGGCCACCAGGAGGGTCGG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRPPGSR*GHQEGR
Trigger: CCGACCCTCCTGGTGGCCTCACCTACTTCCCGGTGG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSKESV*RSMEGL
Trigger: CAACCCTTCCATCGATCTTCACACTGACTCTTTGGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAGCTTCTGCTGTAGTTaGAACAGTTCCAAAGAGTCA +
Preference number: 4 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSFCCS*NSSKES
Trigger: TGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTCACAGATAAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTTGGGGGTGGCGATGCTaGAGGTGCTGGAGCCTGAGC +
Preference number: 4 (lower is better)
Translates to: FTDKSRSFMSCTQGILRTWGWRC*RCWSLS
Trigger: GCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCA...AGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTTATCTGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTTCTTCATCTGCACTTaGGACTGTGCCGTGAGTTGC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGFFICT*DCAVSC
Trigger: GCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAAGGGTGAGTGGGTCTaGCCGGCCCGGGGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRKGEWV*PARGRL
Trigger: GAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSKESV*RSMEGL
Trigger: CAACCCTTCCATCGATCTTCACACTGACTCTTTGGA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRWVPWA*SPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCCTCCCATTTGCAGATaGCATCATAAAATCGCAGCA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWPPICR*HHKIAA
Trigger: TGCTGCGATTTTATGATGGCATCTGCAAATGGGAGG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACCTCCCATTTGCAGATaGCATCATAAAATCGCAGCA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELPPICR*HHKIAA
Trigger: TGCTGCGATTTTATGATGGCATCTGCAAATGGGAGG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTGGGGGTGGCGATGCTaGAGGTGCTGGAGCCTGAGC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRWGWRC*RCWSLS
Trigger: GCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp AGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGCTCTGGGGCTTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: SFMSCTQGILRTEPGLWGFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...GCCCCAGAGCCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATGTAGTCGCTGGGTGTaGACACTTTCTGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELCSRWV*TLSVSS
Trigger: TGAAGAAACAGAAAGTGTCCACACCCAGCGACTACA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAGAGTGTGTAGTCGCTaGGTGTGGACACTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRVCSR*VWTLSV
Trigger: AACAGAAAGTGTCCACACCCAGCGACTACACACTCT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGCAGGTGCTGGAGCCTaGGCAGCATTGCCGACTTCC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRAGAGA*AALPTS
Trigger: GGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCAC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLSAQL*SKQAHH
Trigger: GTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAGCTTCTGCTGTAGTTaGAACAGTTCCAAAGAGTCA +
Preference number: 4 (lower is better)
Translates to: CRTALGPLGLRAESRLELSFCCS*NSSKES
Trigger: TGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGAGCTTCTGCTGTAGTTaGAACAGTTCCAAAGAGTCA +
Preference number: 4 (lower is better)
Translates to: GLRAESRLELEDEGEACWSFCCS*NSSKES
Trigger: TGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCT...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGTGTCGGCCCAGGCCTaGAGGGCTTCGCGCACATTT +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRVSAQA*RASRTF
Trigger: AAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACAC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGTGATAAAGGGTGAGTaGGTCTGGCCGGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRVIKGE*VWPARG
Trigger: ACCCCGGGCCGGCCAGACCCACTCACCCTTTATCAC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTGGAAAGTGAGCACTaGGCCCTCTGGGGGTGGCGA +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLESEH*ALWGWR
Trigger: TCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTGTAGTCGCTGGGTGTaGACACTTTCTGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGCSRWV*TLSVSS
Trigger: TGAAGAAACAGAAAGTGTCCACACCCAGCGACTACA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRPDGHL*DPEPGR
Trigger: CCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGTCACCTCAGCTGTCTaGTCCCCGTTGGGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRVTSAV*SPLGPN
Trigger: GTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGAC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTCTGCGGTCCTCGTTaGCTTTGCCGTGCCACGTCA +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLCGPR*LCRATS
Trigger: TGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAGCTTCTGCTGTAGTTaGAACAGTTCCAAAGAGTCA +
Preference number: 4 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSFCCS*NSSKES
Trigger: TGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCGGGCCCTTGTCCAATaGAGGCTTCTTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRALVQ*RLLGWW
Trigger: CCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCCGGCATTGACTGTCTaGCCTCTGCGGTCCTCGTTG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRPALTV*PLRSSL
Trigger: CAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRSLPLP*HVTSAV
Trigger: GACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCGCGCACATTTCGGTTaGGACAGTGGTAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRAHFG*DSGSQP
Trigger: TGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRDCAVS*SLMALE
Trigger: CTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTGTTTCTAGCAGGCTaGCCGCCTCCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLFLAG*PPPSAG
Trigger: ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTTCTTGGGTGGTGGTaGCTCCTCAGGCTTGGACTC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLLGWW*LLRLGL
Trigger: GAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTGCAGGCTTCTTGGGTaGTGGTGGCTCCTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRCRLLG*WWLLRL
Trigger: AAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp AAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGTGTAGTCGCTGGGTGTaGACACTTTCTGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KSRSFMSCTQGILRTEPGCSRWV*TLSVSS
Trigger: TGAAGAAACAGAAAGTGTCCACACCCAGCGACTACA...CCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAAGCGGCCTAGGGACTaGACAAGGAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRKRPRD*TRKVAQ
Trigger: CTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp ACAGATAAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGTTCTTCATCTGCACTTaGGACTGTGCCGTGAGTTGC +
Preference number: 4 (lower is better)
Translates to: TDKSRSFMSCTQGILRTEFFICT*DCAVSC
Trigger: GCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAA...CTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTTATCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAACACCACCCAAGCATaGTCTTCAGACAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRNTTQA*SSDRAR
Trigger: TCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAGCCAGAGCAGCTTCTaGTGTAGTTGCAACAGTTCC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRSQSSF*CSCNSS
Trigger: GGAACTGTTGCAACTACAGCAGAAGCTGCTCTGGCT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTTCTTCATCTGCACTTaGGACTGTGCCGTGAGTTGC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRFFICT*DCAVSC
Trigger: GCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTTCATCTTCTCACTCTaGAAAGTGAGCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRFIFSL*KVSTGP
Trigger: GGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR TCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRSKESV*RSMEGL
Trigger: CAACCCTTCCATCGATCTTCACACTGACTCTTTGGA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTTCTGTTTCTTCATCTaGACTTGCGACTGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRFCFFI*TCDCAV
Trigger: CACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAGAGTGTGTAGTCGCTaGGTGTGGACACTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRVCSR*VWTLSV
Trigger: AACAGAAAGTGTCCACACCCAGCGACTACACACTCT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR GCA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCCTCCCATTTGCAGATaGCATCATAAAATCGCAGCA +
Preference number: 4 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRPPICR*HHKIAA
Trigger: TGCTGCGATTTTATGATGGCATCTGCAAATGGGAGG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
3UTR CAA 72 bp CGGGCAGCAATATGTAAGTTCTTTGGGGTAAGGGATTaGGATTCCCAAAGGATGGAACTCTATATAAAGTGC +
Preference number: 4 (lower is better)
Translates to: RAAICKFFGVRD*DSQRMELYIKC
Trigger: GCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAATCCCTTACCCCAAAGAACTTACATATTGCTGCCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS GCA 90 bp TCTGGGTCCTGGAGAGCAGAACCTTGGCCCTGGGTGCCCTGGGCTTaGTCCCCAGTCCGCTCTTCGCCTGTTTCTAGCAGGCTGGCCGCC +
Preference number: 5 (lower is better)
Translates to: SGSWRAEPWPWVPWA*SPVRSSPVSSRLAA
Trigger: GGCGGCCAGCCTGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 90 bp CTGGAAAGTGAGCACTGGGCCCTCTGGGGGTGGCGATGCTGCAGGTaGTGGAGCCTGAGCAGCATTGCCGACTTCCTGGCCACCGCGGGT +
Preference number: 5 (lower is better)
Translates to: LESEHWALWGWRCCR*WSLSSIADFLATAG
Trigger: ACCCGCGGTGGCCAGGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGGTCCTCGTTGCCTTaGCCGTGCCACGTCACCTCA +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRSSLP*PCHVTS
Trigger: TGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGG +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGSATPA*TVWPLR
Trigger: CCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS CCA 90 bp GAAAGTGAGCACTGGGCCCTCTGGGGGTGGCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCCGACTTCCTGGCCACCGCGGGTAGT +
Preference number: 5 (lower is better)
Translates to: ESEHWALWGWRCCRC*SLSSIADFLATAGS
Trigger: ACTACCCGCGGTGGCCAGGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTGCTCACTTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGCCTCCTTCAGCAGGTaGGGGATGACGTCATTGGCC +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGASFSR*GMTSLA
Trigger: GGCCAATGACGTCATCCCCAACCTGCTGAAGGAGGC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS TCA 90 bp ACGACCCCTTCAGGTACAGCCAGCTCCGCTCAGCCACACCGGCATTaGCTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTGCCGTGCCACG +
Preference number: 5 (lower is better)
Translates to: TTPSGTASSAQPHRH*LSGLCGPRCLCRAT
Trigger: CGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAAGGGGTCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 90 bp CCGGCATTGACTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTCTGCTCCCCGTTGGGCCCAAACACC +
Preference number: 5 (lower is better)
Translates to: PALTVWPLRSSLPLP*HVTSAVCSPLGPNT
Trigger: GGTGTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGCCCGAGCTGTCCAGTTaGGTGCCTGTGATGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGPELSS*VPVMKL
Trigger: CAGCTTCATCACAGGCACCAAACTGGACAGCTCGGG...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCTGGGTGCCCTGGGCTaGCTCCCCAGTCCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLGALG*LPSPLF
Trigger: GAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTCCAATGCAGGCTTCTaGGGTGGTGGTGGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGSNAGF*GGGGSS
Trigger: TGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS GCA 90 bp GACCAAGGACAGGAGCACCAGGTCAGGCTCCTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCACGTCGTCGATAGAGCGCAGAGGGAA +
Preference number: 5 (lower is better)
Translates to: DQGQEHQVRLLSAQL*SKQAHHVVDRAQRE
Trigger: TTCCCTCTGCGCTCTATCGACGACGTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAGGAGCCTGACCTGGTGCTCCTGTCCTTGGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000166909.2
ENSMUST00000237909.2
CDS GCA 90 bp TCTGCTTCCCGGCTAACTATGTGCACCTTCTGCCGCACCTGGGCTTaGTCCCCAGTCCGCTCTTCGCCTGTTTCTAGCAGGCTGGCCGCC +
Preference number: 5 (lower is better)
Translates to: SASRLTMCTFCRTWA*SPVRSSPVSSRLAA
Trigger: GGCGGCCAGCCTGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS GCA 90 bp TCAGCCTCGGCCGCCTCTGCTTCCCGGCTAACTATGTGCACCTTCTaGCGCACCTGGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCT +
Preference number: 5 (lower is better)
Translates to: SASAASASRLTMCTF*RTWACSPVRSSPVS
Trigger: AGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGCCGAGGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS GCA 90 bp CATGGTTCTTCAGCCTCGGCCGCCTCTGCTTCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGGGCTTGCTCCCCAGTCCGCTCTTCG +
Preference number: 5 (lower is better)
Translates to: HGSSASAASASRLTM*TFCRTWACSPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGCCGAGGCTGAAGAACCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS CCA 90 bp GCCGCCTCTGCTTCCCGGCTAACTATGTGCACCTTCTGCCGCACCTaGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCTAGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: AASASRLTMCTFCRT*ACSPVRSSPVSSRL
Trigger: CAGCCTGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCCTCTGCGGTCCTCGTaGCCTTTGCCGTGCCACGTC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARPLRSS*PLPCHV
Trigger: GACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLMALE*ILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS GCA 90 bp AGCTCCGGCACGTTGGTGGGGATGACACGGTTGACAGCCAGGAAATaGTCCACGAAGCCCAGGACCAAGGACAGGAGCACCAGGTCAGGC +
Preference number: 5 (lower is better)
Translates to: SSGTLVGMTRLTARK*STKPRTKDRSTRSG
Trigger: GCCTGACCTGGTGCTCCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAACGTGCCGGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000237909.2
CDS GCA 90 bp GGGCAAAGCATTCTGGGTCCTGGAGAGCAGAACCTTGGCCCTGGGTaGCCTGGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCTAGCA +
Preference number: 5 (lower is better)
Translates to: GQSILGPGEQNLGPG*PGLAPQSALRLFLA
Trigger: TGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTTTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 90 bp CCAATTGGCCGGCTGGTGGGGATGACACGGTTGACAGCCAGGAAATaGTCCACGAAGCCCAGGACCAAGGACAGGAGCACCAGGTCAGGC +
Preference number: 5 (lower is better)
Translates to: PIGRLVGMTRLTARK*STKPRTKDRSTRSG
Trigger: GCCTGACCTGGTGCTCCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAGCCGGCCAATTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166909.2
CDS CCA 90 bp TTCAGGTACAGCCAGCTCCGCTCAGCCACACCGGCATTGACTGTCTaGCCTCTGCGGTCCTCGTTGCCTTTGCCGTGCCACGTCACCTCA +
Preference number: 5 (lower is better)
Translates to: FRYSQLRSATPALTV*PLRSSLPLPCHVTS
Trigger: TGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 90 bp AAGCATTCTGGGTCCTGGAGAGCAGAACCTTGGCCCTGGGTGCCCTaGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCTAGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: KHSGSWRAEPWPWVP*ACSPVRSSPVSSRL
Trigger: CAGCCTGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 90 bp CCTTGTCCAATGCAGGCTTCTTGGGTGGTGGTGGCTCCTCAGGCTTaGACTCTCTTCGGGGACCACGCCGACGGCCTTCTCGGGCTTCAT +
Preference number: 5 (lower is better)
Translates to: PCPMQASWVVVAPQA*TLFGDHADGLLGLH
Trigger: ATGAAGCCCGAGAAGGCCGTCGGCGTGGTCCCCGAAGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGACAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 90 bp CTGCACTTTGTCCTGAGCCCGGGCCCTTGTCCAATGCAGGCTTCTTaGGTGGTGGTGGCTCCTCAGGCTTGGACTCTCTTCGGGGACCAC +
Preference number: 5 (lower is better)
Translates to: LHFVLSPGPCPMQAS*VVVAPQAWTLFGDH
Trigger: GTGGTCCCCGAAGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCGGGCTCAGGACAAAGTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCTGGGTGCCCTGGGCTaGCTCCCCAGTCCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWLGALG*LPSPLF
Trigger: GAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTACTGGGTGCCCTGGGCTaGCTCCCCAGTCCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELLGALG*LPSPLF
Trigger: GAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAG...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS TCA 90 bp GCCAGCTCCAAGCATGATCTTCAGACAGGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGGCCCCTACCACTGCAAAGGCCACGC +
Preference number: 5 (lower is better)
Translates to: ASSKHDLQTGPDGHL*DPEPGRPLPLQRPR
Trigger: GCGTGGCCTTTGCAGTGGTAGGGGCCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGAAGATCATGCTTGGAGCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113501.8
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCCTCTGCGGTCCTCGTaGCCTTTGCCGTGCCACGTC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWPLRSS*PLPCHV
Trigger: GACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGAGATCGATGGAAGGGTaGATGGCACACACCATGAAC +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGRSMEG*MAHTMN
Trigger: GTTCATGGTGTGTGCCATCAACCCTTCCATCGATCT...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGCCTCCTTCAGCAGGTaGGGGATGACGTCATTGGCC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARASFSR*GMTSLA
Trigger: GGCCAATGACGTCATCCCCAACCTGCTGAAGGAGGC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS TCA 90 bp ACACCACCCAAGCATGATCTTCAGACAGGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGGCCCCTACCACTGCAAAGGCCACGC +
Preference number: 5 (lower is better)
Translates to: TPPKHDLQTGPDGHL*DPEPGRPLPLQRPR
Trigger: GCGTGGCCTTTGCAGTGGTAGGGGCCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGTGGGGATGACACGGTaGACAGCCAGGAAATGCTCC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARVGMTR*TARKCS
Trigger: GGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCAC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCGGTCCTCGTTGCCTTaGCCGTGCCACGTCACCTCA +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWRSSLP*PCHVTS
Trigger: TGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCCTCTGCGGTCCTCGTaGCCTTTGCCGTGCCACGTC +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGPLRSS*PLPCHV
Trigger: GACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGG +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELSATPA*TVWPLR
Trigger: CCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGG +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWSATPA*TVWPLR
Trigger: CCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGAAGAGGCTGGCCCTCCCCCACCCCGTGCAGATTTCCTCCTGGGACCTCAGGGTTGGGGATGACGTCATaGGCCACTTCAAAGAATTCC +
Preference number: 5 (lower is better)
Translates to: GRGWPSPTPCRFPPGTSGLGMTS*ATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAA...CCCTGAGGTCCCAGGAGGAAATCTGCACGGGGTGGGGGAGGGCCAGCCTCTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTCCAATGCAGGCTTCTaGGGTGGTGGTGGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARSNAGF*GGGGSS
Trigger: TGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARAVSCS*MALELI
Trigger: GATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 90 bp TCGAAGCGGCCTAGGGACTGCACAAGGAAAGTTGCCCAGCCTACGTaGAGTACTGGTGTGGGGCTACCCTCCTCCCATTTGCAGATGCCA +
Preference number: 5 (lower is better)
Translates to: SKRPRDCTRKVAQPT*STGVGLPSSHLQMP
Trigger: TGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGGTCCTCGTTGCCTTaGCCGTGCCACGTCACCTCA +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRSSLP*PCHVTS
Trigger: TGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGG +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSATPA*TVWPLR
Trigger: CCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGCCTCCTTCAGCAGGTaGGGGATGACGTCATTGGCC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELASFSR*GMTSLA
Trigger: GGCCAATGACGTCATCCCCAACCTGCTGAAGGAGGC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGTGGGGATGACACGGTaGACAGCCAGGAAATGCTCC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELVGMTR*TARKCS
Trigger: GGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCAC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGTGGGGATGACACGGTaGACAGCCAGGAAATGCTCC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWVGMTR*TARKCS
Trigger: GGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCAC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTCCAATGCAGGCTTCTaGGGTGGTGGTGGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWSNAGF*GGGGSS
Trigger: TGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELAVSCS*MALELI
Trigger: GATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWAVSCS*MALELI
Trigger: GATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp AGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGCTCTGGGGCCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: SFMSCTQGILRTEPGLWGRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...GCCCCAGAGCCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS CCA 90 bp TTTGCAGATGCCATCATAAAATCGCAGCAGGTGGGCAAAGCATTCTaGGTCCTGGAGAGCAGAACCTTGGCCCTGGGTGCCCTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: FADAIIKSQQVGKAF*VLESRTLALGALGL
Trigger: CAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTTTGCCCACCTGCTGCGATTTTATGATGGCATCTGCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGAGATCGATGGAAGGGTaGATGGCACACACCATGAAC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARRSMEG*MAHTMN
Trigger: GTTCATGGTGTGTGCCATCAACCCTTCCATCGATCT...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTCCAATGCAGGCTTCTaGGGTGGTGGTGGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGSNAGF*GGGGSS
Trigger: TGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELLMALE*ILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWLMALE*ILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARFLHLH*RLCREL
Trigger: CAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 90 bp CCCAGCCTACGTGCAGTACTGGTGTGGGGCTACCCTCCTCCCATTTaGAGATGCCATCATAAAATCGCAGCAGGTGGGCAAAGCATTCTG +
Preference number: 5 (lower is better)
Translates to: PSLRAVLVWGYPPPI*RCHHKIAAGGQSIL
Trigger: CAGAATGCTTTGCCCACCTGCTGCGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp CTGGAAGAGGTCCTGCTCTGTTCTTGCGCCAGTTTGGTCAGGAAGGGGGCGAGGTTGGGGATGACGTCATaGGCCACTTCAAAGAATTCC +
Preference number: 5 (lower is better)
Translates to: LEEVLLCSCASLVRKGARLGMTS*ATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAA...CCTCGCCCCCTTCCTGACCAAACTGGCGCAAGAACAGAGCAGGACCTCTTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLMALE*ILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS GCA 90 bp CTACGTGCAGTACTGGTGTGGGGCTACCCTCCTCCCATTTGCAGATaGCATCATAAAATCGCAGCAGGTGGGCAAAGCATTCTGGGTCCT +
Preference number: 5 (lower is better)
Translates to: LRAVLVWGYPPPICR*HHKIAAGGQSILGP
Trigger: AGGACCCAGAATGCTTTGCCCACCTGCTGCGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 90 bp GCTGGGTGTGGACACTTTCTGTTTCTTCATCTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGATCTTGGTGGC +
Preference number: 5 (lower is better)
Translates to: AGCGHFLFLHLHLRL*RELQLDGARVDLGG
Trigger: GCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CCA 90 bp GGGACTGCACAAGGAAAGTTGCCCAGCCTACGTGCAGTACTGGTGTaGGGCTACCCTCCTCCCATTTGCAGATGCCATCATAAAATCGCA +
Preference number: 5 (lower is better)
Translates to: GTAQGKLPSLRAVLV*GYPPPICRCHHKIA
Trigger: TGCGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTAAGATCGATGGAAGGGTaGATGGCACACACCATGAAC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELRSMEG*MAHTMN
Trigger: GTTCATGGTGTGTGCCATCAACCCTTCCATCGATCT...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWFLHLH*RLCREL
Trigger: CAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELFLHLH*RLCREL
Trigger: CAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 90 bp GACACTTTCTGTTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAGTTGATCTTGGTGGCCACCAGTAGC +
Preference number: 5 (lower is better)
Translates to: DTFCFFICTCDCAVS*SLMALELILVATSS
Trigger: GCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGAGATCGATGGAAGGGTaGATGGCACACACCATGAAC +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGRSMEG*MAHTMN
Trigger: GTTCATGGTGTGTGCCATCAACCCTTCCATCGATCT...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp GGACTGAGGGCGGAGTCTAGGCTTGAATTAGAGGATGAGGGTGAAGCCTGCTGGTTGGGGATGACGTCATaGGCCACTTCAAAGAATTCC +
Preference number: 5 (lower is better)
Translates to: GLRAESRLELEDEGEACWLGMTS*ATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAA...CCAGCAGGCTTCACCCTCATCCTCTAATTCAAGCCTAGACTCCGCCCTCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TGCAGGACAGCTCTGGGTCCCCTAGGACTGAGGGCGGAGTCTAGGCTTGAATTATTGGGGATGACGTCATaGGCCACTTCAAAGAATTCC +
Preference number: 5 (lower is better)
Translates to: CRTALGPLGLRAESRLELLGMTS*ATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAA...TAATTCAAGCCTAGACTCCGCCCTCAGTCCTAGGGGACCCAGAGCTGTCCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCTGGGTGCCCTGGGCTaGCTCCCCAGTCCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLGALG*LPSPLF
Trigger: GAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp AGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGCCAGGGCTCTGGGGCTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: SFMSCTQGILRTEPGLWGFLHLH*RLCREL
Trigger: CAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAA...GCCCCAGAGCCCTGGCTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS TCA 90 bp AGCCAGAGCAGCTGCTGTAGTTGCAACAGTTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTGATGGCACACACCATGAACGCCACC +
Preference number: 5 (lower is better)
Translates to: SQSSCCSCNSSKESV*RSMEGLMAHTMNAT
Trigger: GGTGGCGTTCATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACACTGACTCTTTGGAACTGTTGCAACTACAGCAGCTGCTCTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170132.2
CDS-3UTR CAA 90 bp TCCAATTGGCCGGCTGGTGGGGATGACACCTACATTCTAAGAACTGAGCCAGGGTTGGGGATGACGTCATaGGCCACTTCAAAGAATTCC +
Preference number: 5 (lower is better)
Translates to: SNWPAGGDDTYILRTEPGLGMTS*ATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAA...CCCTGGCTCAGTTCTTAGAATGTAGGTGTCATCCCCACCAGCCGGCCAATTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS TCA 90 bp CAGAGCAGCTTCTGCTGTAGTTGCAACAGTTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTGATGGCACACACCATGAACGCCACC +
Preference number: 5 (lower is better)
Translates to: QSSFCCSCNSSKESV*RSMEGLMAHTMNAT
Trigger: GGTGGCGTTCATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACACTGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCTGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCGGTCCTCGTTGCCTTaGCCGTGCCACGTCACCTCA +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRSSLP*PCHVTS
Trigger: TGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTCACAGATAAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: FTDKSRSFMSCTQGILRTALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...AGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTTATCTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp ACAGATAAGAGTCGGAGCTTCATGTCCTGTACTCAGGGGATTCTAAGAACTGAGGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATC +
Preference number: 5 (lower is better)
Translates to: TDKSRSFMSCTQGILRTEAVSCS*MALELI
Trigger: GATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC...CTCAGTTCTTAGAATCCCCTGAGTACAGGACATGAAGCTCCGACTCTTATCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170292.2
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRALELI*VATSSS
Trigger: GGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGA +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRLCRE*QLDGAR
Trigger: TCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCG...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGTGGGGATGACACGGTaGACAGCCAGGAAATGCTCC +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRVGMTR*TARKCS
Trigger: GGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCAC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATC +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRAVSCS*MALELI
Trigger: GATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRLMALE*ILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGAGATCGATGGAAGGGTaGATGGCACACACCATGAAC +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRRSMEG*MAHTMN
Trigger: GTTCATGGTGTGTGCCATCAACCCTTCCATCGATCT...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS-3UTR CAA 90 bp TTTGGATTCCCAAAGGATGGAACTCTATATAAAGTGCGGAAATCTACCCCTAGGTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: FGFPKDGTLYKVRKSTPRFLHLH*RLCREL
Trigger: CAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAA...CCTAGGGGTAGATTTCCGCACTTTATATAGAGTTCCATCCTTTGGGAATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113504.10
CDS CCA 72 bp ACGTCGTCGATAGAGCGCAGAGGGAACAGCGTCTTCTaGGCGGCCTTCAGCCCCATGGCGGCGGGCGGTGGC +
Preference number: 6 (lower is better)
Translates to: TSSIERRGNSVF*AAFSPMAAGGG
Trigger: GCCACCGCCCGCCGCCATGGGGCTGAAGGCCGCCCAGAAGACGCTGTTCCCTCTGCGCTCTATCGACGACGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113502.10
CDS GCA 72 bp GAGCACTGGGCCCTCTGGGGGTGGCGATGCTGCAGGTaGTGGAGCCTGAGCAGCATTGCCGACTTCCTGGCC +
Preference number: 6 (lower is better)
Translates to: EHWALWGWRCCR*WSLSSIADFLA
Trigger: GGCCAGGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTGCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CCA 72 bp CACTGGGCCCTCTGGGGGTGGCGATGCTGCAGGTGCTaGAGCCTGAGCAGCATTGCCGACTTCCTGGCCACC +
Preference number: 6 (lower is better)
Translates to: HWALWGWRCCRC*SLSSIADFLAT
Trigger: GGTGGCCAGGAAGTCGGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 72 bp CAGGAGCACCAGGTCAGGCTCCTCTCGGCCCAGCTCTaGAGCAAACAGGCGCACCACGTCGTCGATAGAGCG +
Preference number: 6 (lower is better)
Translates to: QEHQVRLLSAQL*SKQAHHVVDRA
Trigger: CGCTCTATCGACGACGTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAGGAGCCTGACCTGGTGCTCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000166909.2
ENSMUST00000237909.2
CDS GCA 72 bp ACTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTGCCGTaGCACGTCACCTCAGCTGTCTGCTCCCCGTTGGGC +
Preference number: 6 (lower is better)
Translates to: TVWPLRSSLPLP*HVTSAVCSPLG
Trigger: GCCCAACGGGGAGCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 72 bp GCCGCCTCTGCTTCCCGGCTAACTATGTGCACCTTCTaGCGCACCTGTCCCTCGAAGCGGCCTAGGGACTGC +
Preference number: 6 (lower is better)
Translates to: AASASRLTMCTF*RTCPSKRPRDC
Trigger: GCAGTCCCTAGGCCGCTTCGAGGGACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 72 bp GCCGCCTCTGCTTCCCGGCTAACTATGTGCACCTTCTaGCGCACCTGGGCTTGCTCCCCAGTCCGCTCTTCG +
Preference number: 6 (lower is better)
Translates to: AASASRLTMCTF*RTWACSPVRSS
Trigger: CGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS GCA 72 bp TCAGCCTCGGCCGCCTCTGCTTCCCGGCTAACTATGTaGACCTTCTGCCGCACCTGGGCTTGCTCCCCAGTC +
Preference number: 6 (lower is better)
Translates to: SASAASASRLTM*TFCRTWACSPV
Trigger: GACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGCCGAGGCTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS CCA 72 bp AGCCAGCTCCGCTCAGCCACACCGGCATTGACTGTCTaGCCTCTGCGGTCCTCGTTGCCTTTGCCGTGCCAC +
Preference number: 6 (lower is better)
Translates to: SQLRSATPALTV*PLRSSLPLPCH
Trigger: GTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp GGGTCCTGGAGAGCAGAACCTTGGCCCTGGGTGCCCTaGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCT +
Preference number: 6 (lower is better)
Translates to: GSWRAEPWPWVP*ACSPVRSSPVS
Trigger: AGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp TGGGCAAAGCATTCTGGGTCCTGGAGAGCAGAACCTTaGCCCTGGGTGCCCTGGGCTTGCTCCCCAGTCCGC +
Preference number: 6 (lower is better)
Translates to: WAKHSGSWRAEP*PWVPWACSPVR
Trigger: GCGGACTGGGGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTTTGCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 90 bp CGCTCAGCCACACCGGCATTGACTGTCTGGCCTCTGCGGTCCTCGTaGCCTTTGCCGTGCCACGTCACCTCAGCTGTCTGCTCCCCGTTG +
Preference number: 6 (lower is better)
Translates to: RSATPALTVWPLRSS*PLPCHVTSAVCSPL
Trigger: CAACGGGGAGCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 90 bp GCCGCACCTGTCCCTCGAAGCGGCCTAGGGACTGCACAAGGAAAGTaGCCCAGCCTACGTGCAGTACTGGTGTGGGGCTACCCTCCTCCC +
Preference number: 6 (lower is better)
Translates to: AAPVPRSGLGTAQGK*PSLRAVLVWGYPPP
Trigger: GGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTTCGAGGGACAGGTGCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp ATGCAGGCTTCTTGGGTGGTGGTGGCTCCTCAGGCTTaGACTCTCTTCGGGGACCACGCCGACGGCCTTCTC +
Preference number: 6 (lower is better)
Translates to: MQASWVVVAPQA*TLFGDHADGLL
Trigger: GAGAAGGCCGTCGGCGTGGTCCCCGAAGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 90 bp TACGACCCCTTCAGGTACAGCCAGCTCCGCTCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTGCCGTGCCAC +
Preference number: 6 (lower is better)
Translates to: YDPFRYSQLRSATPA*TVWPLRSSLPLPCH
Trigger: GTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAAGGGGTCGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 90 bp CTGGGCTGGAAGGTGAGCTCCGGCACGTTGGTGGGGATGACACGGTaGACAGCCAGGAAATGCTCCACGAAGCCCAGGACCAAGGACAGG +
Preference number: 6 (lower is better)
Translates to: LGWKVSSGTLVGMTR*TARKCSTKPRTKDR
Trigger: CCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAACGTGCCGGAGCTCACCTTCCAGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000237909.2
CDS CAA 90 bp CCTGCACTTTGTCCTGAGCCCGGGCCCTTGTCCAATGCAGGCTTCTaGGGTGGTGGTGGCTCCTCAGGCTTGGACTCTCTTCGGGGACCA +
Preference number: 6 (lower is better)
Translates to: PALCPEPGPLSNAGF*GGGGSSGLDSLRGP
Trigger: TGGTCCCCGAAGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCGGGCTCAGGACAAAGTGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS TCA 72 bp TCAGGTACAGCCAGCTCCGCTCAGCCACACCGGCATTaGCTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTGC +
Preference number: 6 (lower is better)
Translates to: SGTASSAQPHRH*LSGLCGPRCLC
Trigger: GCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 72 bp CGGCTGGTGGGGATGACACGGTTGACAGCCAGGAAATaGTCCACGAAGCCCAGGACCAAGGACAGGAGCACC +
Preference number: 6 (lower is better)
Translates to: RLVGMTRLTARK*STKPRTKDRST
Trigger: GGTGCTCCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166909.2
CDS CAA 72 bp ACACCGGCATTGACTGTCTGGCCTCTGCGGTCCTCGTaGCCTTTGCCGTGCCACGTCACCTCAGCTGTCTGC +
Preference number: 6 (lower is better)
Translates to: TPALTVWPLRSS*PLPCHVTSAVC
Trigger: GCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 72 bp AATGCAGGCTTCTTGGGTGGTGGTGGCTCCTCAGGCTaGGACTCTCTTCGGGGACCACGCCGACGGCCTTCT +
Preference number: 6 (lower is better)
Translates to: NAGFLGGGGSSG*DSLRGPRRRPS
Trigger: AGAAGGCCGTCGGCGTGGTCCCCGAAGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp GCTTCCCGGCTAACTATGTGCACCTTCTGCCGCACCTaGGCTTGCTCCCCAGTCCGCTCTTCGCCTGTTTCT +
Preference number: 6 (lower is better)
Translates to: ASRLTMCTFCRT*ACSPVRSSPVS
Trigger: AGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078137.12
CDS CAA 72 bp TTCAGGTACAGCCAGCTCCGCTCAGCCACACCGGCATaGACTGTCTGGCCTCTGCGGTCCTCGTTGCCTTTG +
Preference number: 6 (lower is better)
Translates to: FRYSQLRSATPA*TVWPLRSSLPL
Trigger: CAAAGGCAACGAGGACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 72 bp GTCCCTCGAAGCGGCCTAGGGACTGCACAAGGAAAGTaGCCCAGCCTACGTGCAGTACTGGTGTGGGGCTAC +
Preference number: 6 (lower is better)
Translates to: VPRSGLGTAQGK*PSLRAVLVWGY
Trigger: GTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTTCGAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 72 bp ACGTTGGTGGGGATGACACGGTTGACAGCCAGGAAATaGTCCACGAAGCCCAGGACCAAGGACAGGAGCACC +
Preference number: 6 (lower is better)
Translates to: TLVGMTRLTARK*STKPRTKDRST
Trigger: GGTGCTCCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000237909.2
CDS GCA 72 bp TTCTGCCGCACCTGTCCCTCGAAGCGGCCTAGGGACTaGACAAGGAAAGTTGCCCAGCCTACGTGCAGTACT +
Preference number: 6 (lower is better)
Translates to: FCRTCPSKRPRD*TRKVAQPTCST
Trigger: AGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCCTAGGCCGCTTCGAGGGACAGGTGCGGCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS GCA 72 bp CCTAGGGACTGCACAAGGAAAGTTGCCCAGCCTACGTaGAGTACTGGTGTGGGGCTACCCTCCTCCCATTTG +
Preference number: 6 (lower is better)
Translates to: PRDCTRKVAQPT*STGVGLPSSHL
Trigger: CAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCCTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp CTGCACAAGGAAAGTTGCCCAGCCTACGTGCAGTACTaGTGTGGGGCTACCCTCCTCCCATTTGCAGATGCC +
Preference number: 6 (lower is better)
Translates to: LHKESCPAYVQY*CGATLLPFADA
Trigger: GGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS TCA 72 bp AAGCATGATCTTCAGACAGGGCCAGATGGACATCTCTaGGACCCAGAGCCTGGCAGGCCCCTACCACTGCAA +
Preference number: 6 (lower is better)
Translates to: KHDLQTGPDGHL*DPEPGRPLPLQ
Trigger: TTGCAGTGGTAGGGGCCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGAAGATCATGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp CCAGCTCCTCCAGGTCTGCCAAGTTCCCTAGCGCCATaGGGTATCTTTCCAGATGTCCGAGGTCATACAGCA +
Preference number: 6 (lower is better)
Translates to: PAPPGLPSSLAP*GIFPDVRGHTA
Trigger: TGCTGTATGACCTCGGACATCTGGAAAGATACCCCATGGCGCTAGGGAACTTGGCAGACCTGGAGGAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170132.2
CDS CAA 72 bp GACTGTGCCGTGAGTTGCAGCTTGATGGCGCTCGAGTaGATCTTGGTGGCCACCAGTAGCTCCTTCATGCCT +
Preference number: 6 (lower is better)
Translates to: DCAVSCSLMALE*ILVATSSSFMP
Trigger: AGGCATGAAGGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 72 bp CGTGCAGTACTGGTGTGGGGCTACCCTCCTCCCATTTaGAGATGCCATCATAAAATCGCAGCAGGTGGGCAA +
Preference number: 6 (lower is better)
Translates to: RAVLVWGYPPPI*RCHHKIAAGGQ
Trigger: TTGCCCACCTGCTGCGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CCA 72 bp CAAGGAAAGTTGCCCAGCCTACGTGCAGTACTGGTGTaGGGCTACCCTCCTCCCATTTGCAGATGCCATCAT +
Preference number: 6 (lower is better)
Translates to: QGKLPSLRAVLV*GYPPPICRCHH
Trigger: ATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 72 bp CCTGTTTCTAGCAGGCTGGCCGCCTCCTTCAGCAGGTaGGGGATGACGTCATTGGCCACTTCAAAGAATTCC +
Preference number: 6 (lower is better)
Translates to: PVSSRLAASFSR*GMTSLATSKNS
Trigger: GGAATTCTTTGAAGTGGCCAATGACGTCATCCCCAACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 72 bp GCCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGATCTaGGTGGCCACCAGTAGCTCCTTCATGCCTTTCATC +
Preference number: 6 (lower is better)
Translates to: AVSCSLMALELI*VATSSSFMPFI
Trigger: GATGAAAGGCATGAAGGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CAA 72 bp TTCATCTGCACTTGCGACTGTGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATCTTGGTGGCCACCAGT +
Preference number: 6 (lower is better)
Translates to: FICTCDCAVSCS*MALELILVATS
Trigger: ACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 72 bp TGTTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTTaGAGCTTGATGGCGCTCGAGTTGATCTTGGTGGCC +
Preference number: 6 (lower is better)
Translates to: CFFICTCDCAVS*SLMALELILVA
Trigger: GGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CAA 72 bp CTGTTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTaGCAGCTTGATGGCGCTCGAGTTGATCTTGGTGGC +
Preference number: 6 (lower is better)
Translates to: LFLHLHLRLCRE*QLDGARVDLGG
Trigger: GCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CAA 72 bp GCTGGGTGTGGACACTTTCTGTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTGCAGCTTGATGGCGCT +
Preference number: 6 (lower is better)
Translates to: AGCGHFLFLHLH*RLCRELQLDGA
Trigger: AGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS CAA 90 bp TTCTGTTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTTGCAGCTaGATGGCGCTCGAGTTGATCTTGGTGGCCACCAGTAGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FCFFICTCDCAVSCS*MALELILVATSSSF
Trigger: GAAGGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 72 bp GTACTGGTGTGGGGCTACCCTCCTCCCATTTGCAGATaGCATCATAAAATCGCAGCAGGTGGGCAAAGCATT +
Preference number: 6 (lower is better)
Translates to: VLVWGYPPPICR*HHKIAAGGQSI
Trigger: AATGCTTTGCCCACCTGCTGCGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000056391.15
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
CDS CAA 90 bp TGTGTAGTCGCTGGGTGTGGACACTTTCTGTTTCTTCATCTGCACTaGCGACTGTGCCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGAT +
Preference number: 6 (lower is better)
Translates to: CVVAGCGHFLFLHLH*RLCRELQLDGARVD
Trigger: ATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGCGACTACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS GCA 72 bp GGACACTTTCTGTTTCTTCATCTGCACTTGCGACTGTaGCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGAT +
Preference number: 6 (lower is better)
Translates to: GHFLFLHLHLRL*RELQLDGARVD
Trigger: ATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS TCA 72 bp GGGGTAGATGTGTTCATCCTGGTAGTAGGTCTTAGCTaGGGCAATTCCCTTGTGATAAAGGGTGAGTGGGTC +
Preference number: 6 (lower is better)
Translates to: GVDVFILVVGLS*GNSLVIKGEWV
Trigger: GACCCACTCACCCTTTATCACAAGGGAATTGCCTCAGCTAAGACCTACTACCAGGATGAACACATCTACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170132.2
CDS CCA 72 bp GCCGCTTTAGGAAAGAGAGTGTGTAGTCGCTGGGTGTaGACACTTTCTGTTTCTTCATCTGCACTTGCGACT +
Preference number: 6 (lower is better)
Translates to: AALGKRVCSRWV*TLSVSSSALAT
Trigger: AGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGCGACTACACACTCTCTTTCCTAAAGCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10
ENSMUST00000170292.2
CDS TCA 72 bp AGCTGCTGTAGTTGCAACAGTTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTGATGGCACACACCATG +
Preference number: 6 (lower is better)
Translates to: SCCSCNSSKESV*RSMEGLMAHTM
Trigger: CATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACACTGACTCTTTGGAACTGTTGCAACTACAGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170132.2
CDS TCA 72 bp TTCTGCTGTAGTTGCAACAGTTCCAAAGAGTCAGTGTaGAGATCGATGGAAGGGTTGATGGCACACACCATG +
Preference number: 6 (lower is better)
Translates to: FCCSCNSSKESV*RSMEGLMAHTM
Trigger: CATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACACTGACTCTTTGGAACTGTTGCAACTACAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000056391.15
ENSMUST00000078137.12
ENSMUST00000079327.12
ENSMUST00000113500.8
ENSMUST00000113501.8
ENSMUST00000113502.10
ENSMUST00000113503.10
ENSMUST00000113504.10