Pregenerated sensors for MEMO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058704

Ensembl transcript IDs: ENSMUST00000233514.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GACACTCTTCAATATCTTCATGTGCAGACTACCGAACACAGTCATTaGAGGAAAGGAATAAATCTACTTGTTTTTAAAGCATCCTTGAAT	+
Preference number: 1 (lower is better) Translates to: DTLQYLHVQTTEHSH*RKGINLLVFKASLN Trigger: ATTCAAGGATGCTTTAAAAACAAGTAGATTTATTCCTTTCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGATATTGAAGAGTGTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR GCA 90 bp	ACACCATACCATTATTTTAGTTGGAAGAGCCGCACCAAAAATCATGCCCTCCCCTTCAGATATGCTAAATaGTTTACAAGTCACTGTGTG	+
Preference number: 2 (lower is better) Translates to: TPYHYFSWKSRTKNHALPFRYAK*FTSHCV Trigger: CACACAGTGACTTGTAAAGCATTTAGCATATCTGAA...GGGGAGGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR GCA 90 bp	ACACCATACCATTATTTTAGTTGGAAGAGCCGCACCAAAAATCATGCCCTCCCCATCGAAGCTGAGGCTTaGCATTTTAACAAAAATTCT	+
Preference number: 2 (lower is better) Translates to: TPYHYFSWKSRTKNHALPIEAEA*HFNKNS Trigger: AGAATTTTTGTTAAAATGGCAAGCCTCAGCTTCGAT...GGGGAGGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR TCA 90 bp	AGACTAACACTCTCCAATGTTATAGAAACATCCAGTGTTGGTAAAACAGGGATGTGGTCTGCAACAACTTaGAACACAACTAATGACACT	+
Preference number: 2 (lower is better) Translates to: RLTLSNVIETSSVGKTGMWSATT*NTTNDT Trigger: AGTGTCATTAGTTGTGTTTCAAGTTGTTGCAGACCA...CATCCCTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR GCA 90 bp	AGACTAACACTCTCCAATGTTATAGAAACATCCAGTGTTGGTAAAACAGGGATGTTACAAGTCACTGTGTaGCAATTTGGGCAAATATTT	+
Preference number: 2 (lower is better) Translates to: RLTLSNVIETSSVGKTGMLQVTV*QFGQIF Trigger: AAATATTTGCCCAAATTGGCACACAGTGACTTGTAA...CATCCCTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR CCA 90 bp	AGACTAACACTCTCCAATGTTATAGAAACATCCAGTGTTGGTAAAACAGGGATGTACCATTATTTTAGTTaGAAGAGCCGCACCAAAAAT	+
Preference number: 2 (lower is better) Translates to: RLTLSNVIETSSVGKTGMYHYFS*KSRTKN Trigger: ATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTA...CATCCCTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR-3UTR CAA 90 bp	ATACAACACCATACCATTATTTTAGTTGGAAGAGCCGCACCAAAAATCATGCCCTCACTGTGTGCCAATTaGGGCAAATATTTTGATTCC	+
Preference number: 3 (lower is better) Translates to: IQHHTIILVGRAAPKIMPSLCAN*GKYFDS Trigger: GGAATCAAAATATTTGCCCAAATTGGCACACAGTGA...GGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGTTGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
3UTR CCA 72 bp	CAATATCTTCATGTGCAGACTACCGAACACAGTCATTaGAGGAAAGGAATAAATCTACTTGTTTTTAAAGCA	+
Preference number: 3 (lower is better) Translates to: QYLHVQTTEHSH*RKGINLLVFKA Trigger: TGCTTTAAAAACAAGTAGATTTATTCCTTTCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGATATTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233514.3
CDS-3UTR TCA 90 bp	CTTGAAACACAACTAATGACACTCTTCAATATCTTCATGTGCAGACTACCGAACGTTCAGCTGAGGTCCTaGGGCGGTGTACCAGCTCCC	+
Preference number: 4 (lower is better) Translates to: LETQLMTLFNIFMCRLPNVQLRS*GGVPAP Trigger: GGGAGCTGGTACACCGCCTCAGGACCTCAGCTGAAC...GTTCGGTAGTCTGCACATGAAGATATTGAAGAGTGTCATTAGTTGTGTTTCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233514.3