RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MELTF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022780

Ensembl transcript IDs: ENSMUST00000023464.6

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACCCCAGCCAGCCAGGAGGCTCCAGGTGGGAGGCACAGGTTCGCTaGTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAG +
Preference number: 1 (lower is better)
Translates to: HPSQPGGSRWEAQVR*WRHRCGRSDWATRQ
Trigger: CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACCTGGAGCCTCCTGGCTGGCTGGGGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp CCCAGCCAGCCAGGAGGCTCCAGGTGGGAGGCACAGGTTCGCTGCTaGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGTCG +
Preference number: 1 (lower is better)
Translates to: PSQPGGSRWEAQVRC*RHRCGRSDWATRQS
Trigger: CGACTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACCTGGAGCCTCCTGGCTGGCTGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp CCGACGGTGTGGCCTTGGTGGACAAGTGCCCATAGGAGAGAGCGGTaGGGCAGCGAGAGCAGGGGCTGCTGGGTGGTAGTGTGTCGCACA +
Preference number: 1 (lower is better)
Translates to: PTVWPWWTSAHRRER*GSESRGCWVVVCRT
Trigger: TGTGCGACACACTACCACCCAGCAGCCCCTGCTCTCGCTGCCCCACCGCTCTCTCCTATGGGCACTTGTCCACCAAGGCCACACCGTCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp AGTGCCCATAGGAGAGAGCGGTGGGGCAGCGAGAGCAGGGGCTGCTaGGTGGTAGTGTGTCGCACAGGTTCCCTAGGTTGGTGGTGTGCT +
Preference number: 1 (lower is better)
Translates to: SAHRRERWGSESRGC*VVVCRTGSLGWWCA
Trigger: AGCACACCACCAACCTAGGGAACCTGTGCGACACACTACCACCCAGCAGCCCCTGCTCTCGCTGCCCCACCGCTCTCTCCTATGGGCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp GACTCTGGCTGGGACACTGCCAGGACCTTCTCTACTGGTGAGCCATaGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCA +
Preference number: 1 (lower is better)
Translates to: DSGWDTARTFSTGEP*KGSVPSSPTGGGEP
Trigger: TGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGCTCACCAGTAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 90 bp CCTTGCCTCTCCTCATCCCGCCCCGCGCTCTCCTGCAGGGTTAGCTaGTGTCCTGGTTTCTTCCGGTTGAGCTCTGTAGCTTTCCCTGCT +
Preference number: 1 (lower is better)
Translates to: PCLSSSRPALSCRVS*CPGFFRLSSVAFPA
Trigger: AGCAGGGAAAGCTACAGAGCTCAACCGGAAGAAACCAGGACATCAGCTAACCCTGCAGGAGAGCGCGGGGCGGGATGAGGAGAGGCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 90 bp CGAGAGAACCAGGGATCCTCTCGAAAGATGCAACTGCCCAACAGGTaGAGGGTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCG +
Preference number: 1 (lower is better)
Translates to: RENQGSSRKMQLPNR*RVKGRQGSPQSPGS
Trigger: CGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCACCCTGCACCTGTTGGGCAGTTGCATCTTTCGAGAGGATCCCTGGTTCTCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp GTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTaGAAGCTGCTCCACGGTTGCCATGGCAACCAGCATCTTCACTCT +
Preference number: 1 (lower is better)
Translates to: VCSFLGISPGGRYRG*KLLHGCHGNQHLHS
Trigger: AGAGTGAAGATGCTGGTTGCCATGGCAACCGTGGAGCAGCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACAC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 90 bp ACCAGGGATCCTCTCGAAAGATGCAACTGCCCAACAGGTGCAGGGTaGAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCGTGGTATA +
Preference number: 1 (lower is better)
Translates to: TRDPLERCNCPTGAG*REDRALPNPLARGI
Trigger: TATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCACCCTGCACCTGTTGGGCAGTTGCATCTTTCGAGAGGATCCCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 90 bp GGTGTGGGAGGAGTGACTGGGCTACTCGCCAGTCGCCTCAGGTATTaGGGGCTCCAGCAAGTGGGAAGACTTGGCCTTAACAATCATCCT +
Preference number: 1 (lower is better)
Translates to: GVGGVTGLLASRLRY*GLQQVGRLGLNNHP
Trigger: AGGATGATTGTTAAGGCCAAGTCTTCCCACTTGCTGGAGCCCTCAATACCTGAGGCGACTGGCGAGTAGCCCAGTCACTCCTCCCACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 90 bp TTCACACGGATAAGGTGTGTGCGTGTGCGTGTGCGCGTGCGTGCTTaGGTGGTGATGTGGGAAGGGGTATATGAAGGCAGGGAGAAAACT +
Preference number: 1 (lower is better)
Translates to: FTRIRCVRVRVRVRA*VVMWEGVYEGREKT
Trigger: AGTTTTCTCCCTGCCTTCATATACCCCTTCCCACATCACCACGCAAGCACGCACGCGCACACGCACACGCACACACCTTATCCGTGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp GAGTACACTTCTCACTGTGAAGTCCCCAGCTCAGAGAAGAATGGATaGCTGTGTACTGGGAGGAGGAGGGGCTTGCTCTCCCAAGCACCA +
Preference number: 1 (lower is better)
Translates to: EYTSHCEVPSSEKNG*LCTGRRRGLLSQAP
Trigger: TGGTGCTTGGGAGAGCAAGCCCCTCCTCCTCCCAGTACACAGCCATCCATTCTTCTCTGAGCTGGGGACTTCACAGTGAGAAGTGTACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 90 bp CACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTaGAGTCCCCAGCTCAGAGAAGAATGGATGGCTGTGTACTGGGAG +
Preference number: 1 (lower is better)
Translates to: HFGQHSRPHRVHFSL*SPQLREEWMAVYWE
Trigger: CTCCCAGTACACAGCCATCCATTCTTCTCTGAGCTGGGGACTTCACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 90 bp ACAGTACAGCTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTTaGTGTCCAGAGGGCTGGGCTCCTTGGTTGGTGTCACATCAGAAG +
Preference number: 1 (lower is better)
Translates to: TVQLWPSSHPSLAKS*CPEGWAPWLVSHQK
Trigger: CTTCTGATGTGACACCAACCAAGGAGCCCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAGCTGTACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp AGGTGTGTGCGTGTGCGTGTGCGCGTGCGTGCTTGCGTGGTGATGTaGGAAGGGGTATATGAAGGCAGGGAGAAAACTAATGTTGAGACT +
Preference number: 1 (lower is better)
Translates to: RCVRVRVRVRACVVM*EGVYEGREKTNVET
Trigger: AGTCTCAACATTAGTTTTCTCCCTGCCTTCATATACCCCTTCCCACATCACCACGCAAGCACGCACGCGCACACGCACACGCACACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp TTTCTGGTTCTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTaGCTCTCACAGTTCGAGAGAACCAGGGATCCTCTCGAAAGATGC +
Preference number: 1 (lower is better)
Translates to: FLVLERTMAKWQPRP*LSQFERTRDPLERC
Trigger: GCATCTTTCGAGAGGATCCCTGGTTCTCTCGAACTGTGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp CTGGGCTACTCGCCAGTCGCCTCAGGTATTGAGGGCTCCAGCAAGTaGGAAGACTTGGCCTTAACAATCATCCTGATTCTAGAAATTTCT +
Preference number: 1 (lower is better)
Translates to: LGYSPVASGIEGSSK*EDLALTIILILEIS
Trigger: AGAAATTTCTAGAATCAGGATGATTGTTAAGGCCAAGTCTTCCCACTTGCTGGAGCCCTCAATACCTGAGGCGACTGGCGAGTAGCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp GAAGACTTGGCCTTAACAATCATCCTGATTCTAGAAATTTCTCTTTaGGTTAGAATCGCACCTCGGAGGCTTGTGTGTGTGTGTGAGTTC +
Preference number: 1 (lower is better)
Translates to: EDLALTIILILEISL*VRIAPRRLVCVCEF
Trigger: GAACTCACACACACACACAAGCCTCCGAGGTGCGATTCTAACCCAAAGAGAAATTTCTAGAATCAGGATGATTGTTAAGGCCAAGTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 90 bp ATTTTAAAAAGAAACCAATGTCTTTCTTTAGCACAAACACAGCAGTaGCCCATGGCAATCAGACGTCATTTACACAACGCTCTTCAAAGT +
Preference number: 1 (lower is better)
Translates to: ILKRNQCLSLAQTQQ*PMAIRRHLHNALQS
Trigger: ACTTTGAAGAGCGTTGTGTAAATGACGTCTGATTGCCATGGGCCACTGCTGTGTTTGTGCTAAAGAAAGACATTGGTTTCTTTTTAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGCCAACAGGTGCAGGGTaGAGGGAAGACAGGGCTCTC +
Preference number: 2 (lower is better)
Translates to: AMERICPVVAHRWGRATGPTGAG*REDRAL
Trigger: GAGAGCCCTGTCTTCCCTTCACCCTGCACCTGTTGG...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGGTCACATCAGAAGGCTaGTGTGCTCAGCAGCCTTGC +
Preference number: 2 (lower is better)
Translates to: AMERICPVVAHRWGRATGVTSEG*CAQQPC
Trigger: GCAAGGCTGCTGAGCACATCAGCCTTCTGATGTGAC...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGGCTGGGCTCCTTGGTTaGTGTCACATCAGAAGGCTG +
Preference number: 2 (lower is better)
Translates to: AMERICPVVAHRWGRATGAGLLG*CHIRRL
Trigger: CAGCCTTCTGATGTGACACCAACCAAGGAGCCCAGC...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGAACCTGGCCTGTCATTGGGATGCAACAGTTTCATTGTaGAGTGAGGTCCAGGCAGCG +
Preference number: 2 (lower is better)
Translates to: VVAHRWGRATGNLACHWDATVSL*SEVQAA
Trigger: CGCTGCCTGGACCTCACTGCACAATGAAACTGTTGC...ATCCCAATGACAGGCCAGGTTCCCAGTGGCTCGCCCCCACCTGTGGGCGACGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp TGGTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCCTCTGTAGCTTTCCCTaGTCTGGGCGTGGCCTGAAG +
Preference number: 2 (lower is better)
Translates to: WCAPSLASHQVAGTEAGSLCSFP*SGRGLK
Trigger: CTTCAGGCCACGCCCAGAGCAGGGAAAGCTACAGAG...GCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCTGTGTGAGTTCTCACCTTaGCTCTCCTCATCCCGCCCC +
Preference number: 2 (lower is better)
Translates to: VCSFLGISPGGRYRGWKLCEFSP*LSSSRP
Trigger: GGGGCGGGATGAGGAGAGGCAAGGTGAGAACTCACA...CAGCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 90 bp CTCCTTGGTTGGTGTCACATCAGAAGGCTGATGTGCTCAGCAGCCTaGCCCCTCCGACGGTGTGGCCTTGGTGGACAAGTGCCCATAGGA +
Preference number: 2 (lower is better)
Translates to: LLGWCHIRRLMCSAA*PLRRCGLGGQVPIG
Trigger: TCCTATGGGCACTTGTCCACCAAGGCCACACCGTCGGAGGGGCAAGGCTGCTGAGCACATCAGCCTTCTGATGTGACACCAACCAAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GGCACAGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCGTGCGCGTGCGTGCTTaGGTGGTGATGTGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: GTDITLWAAQSPTQSTLLVRVRA*VVMWEG
Trigger: CCCTTCCCACATCACCACGCAAGCACGCACGCGCAC...GAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCTGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp AAGACACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTGACGATGGCTGTGCTCCACGGTTGCCATaGCAACCAGCATCTTCACTC +
Preference number: 2 (lower is better)
Translates to: KTQIAPGPRCFQCADDGCAPRLP*QPASSL
Trigger: GAGTGAAGATGCTGGTTGCCATGGCAACCGTGGAGC...ACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp AAGACACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTGACGATGGCTGTGGCACTTCCTTCCTCTaGGGGTTTTGGAGGACTTCA +
Preference number: 2 (lower is better)
Translates to: KTQIAPGPRCFQCADDGCGTSFL*GFWRTS
Trigger: TGAAGTCCTCCAAAACCCTCAGAGGAAGGAAGTGCC...ACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp TTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTACTGGTGAGCCATGGAAGCTGCTCCACGGTTaGCATGGCAACCAGCATCTT +
Preference number: 2 (lower is better)
Translates to: LCDSGWDTARTFSTGEPWKLLHG*HGNQHL
Trigger: AAGATGCTGGTTGCCATGGCAACCGTGGAGCAGCTT...CCATGGCTCACCAGTAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAGGTGTGCTCCTTCCTTaGCATCTCACCAGGTGGCCG +
Preference number: 2 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLGVLLP*HLTRWP
Trigger: CGGCCACCTGGTGAGATGCCAAGGAAGGAGCACACC...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 90 bp CACAGTACAGCTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTaGCTGTCCAGAGGGCTGGGCTCCTTGGTTGGTGTCACATCAGAA +
Preference number: 2 (lower is better)
Translates to: HSTALAFLPSQSSKI*LSRGLGSLVGVTSE
Trigger: TTCTGATGTGACACCAACCAAGGAGCCCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAGCTGTACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp AAACCAATGTCTTTCTTTAGCACAAACACAGCAGTGGCCCATGGCAATCAGACGCCGGTGTGGGAGGAGTaGCTGGGCTACTCGCCAGTC +
Preference number: 2 (lower is better)
Translates to: KPMSFFSTNTAVAHGNQTPVWEE*LGYSPV
Trigger: GACTGGCGAGTAGCCCAGTCACTCCTCCCACACCGG...CGTCTGATTGCCATGGGCCACTGCTGTGTTTGTGCTAAAGAAAGACATTGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GTGTACTGGGAGGAGGAGGGGCTTGCTCTCCCAAGCACCATGGTGACCGATTTTGATCCTCTCGAAAGATaGAACTGCCCAACAGGTGCA +
Preference number: 2 (lower is better)
Translates to: VYWEEEGLALPSTMVTDFDPLER*NCPTGA
Trigger: TGCACCTGTTGGGCAGTTGCATCTTTCGAGAGGATC...AAAATCGGTCACCATGGTGCTTGGGAGAGCAAGCCCCTCCTCCTCCCAGTACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 90 bp ACATTCTTAATGGGAAGGTGGGGGCACTTCCTTCCTCTGAGGGTTTaGGAGGACTTCATCCCCACAGTACAGCTCTGGCCTTCCTCCCAT +
Preference number: 2 (lower is better)
Translates to: TFLMGRWGHFLPLRV*EDFIPTVQLWPSSH
Trigger: ATGGGAGGAAGGCCAGAGCTGTACTGTGGGGATGAAGTCCTCCAAAACCCTCAGAGGAAGGAAGTGCCCCCACCTTCCCATTAAGAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp AGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTTCCTGCAGGGTTAGCTaGTGTCCTGGTTTCTTCCGG +
Preference number: 2 (lower is better)
Translates to: RHHTLGSTVAHTEYTSHCSCRVS*CPGFFR
Trigger: CCGGAAGAAACCAGGACATCAGCTAACCCTGCAGGA...ACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp AGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTAGTTTCATTGTGCAGTaGGGTCCAGGCAGCGCAGAC +
Preference number: 2 (lower is better)
Translates to: RHHTLGSTVAHTEYTSHCSFIVQ*GPGSAD
Trigger: GTCTGCGCTGCCTGGACCTCACTGCACAATGAAACT...ACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp AGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTTGCGTGCTTGCGTGGTaGTGTGGGAAGGGGTATATG +
Preference number: 2 (lower is better)
Translates to: RHHTLGSTVAHTEYTSHCCVLAW*CGKGYM
Trigger: CATATACCCCTTCCCACATCACCACGCAAGCACGCA...ACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAATCAGAAGGCTGATGTaGTCAGCAGCCTTGCCCCTC +
Preference number: 2 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLIRRLM*SAALPL
Trigger: GAGGGGCAAGGCTGCTGAGCACATCAGCCTTCTGAT...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp GACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTGGAGGGCTCCAGCAAGTaGGAAGACTTGGCCTTAACA +
Preference number: 2 (lower is better)
Translates to: DITLWAAQSPTQSTLLTVEGSSK*EDLALT
Trigger: TGTTAAGGCCAAGTCTTCCCACTTGCTGGAGCCCTC...CACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAGAGGGCTGGGCTCCTTaGTTGGTGTCACATCAGAAG +
Preference number: 2 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLEGWAP*LVSHQK
Trigger: CTTCTGATGTGACACCAACCAAGGAGCCCAGCCCTC...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTCCAGGAGGCTCCAGGTaGGAGGCACAGGTTCGCTGC +
Preference number: 2 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFPGGSR*EAQVRC
Trigger: GCAGCGAACCTGTGCCTCCCACCTGGAGCCTCCTGG...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp ACCCTGCATCAAGTTTCTCACACACTAACATTCTTAATGGGAAGGTGGGGGCACTGCTGTCCAGAGGGCTaGGCTCCTTGGTTGGTGTCA +
Preference number: 2 (lower is better)
Translates to: TLHQVSHTLTFLMGRWGHCCPEG*APWLVS
Trigger: TGACACCAACCAAGGAGCCCAGCCCTCTGGACAGCA...GTGCCCCCACCTTCCCATTAAGAATGTTAGTGTGTGAGAAACTTGATGCAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAAGTCTAGCAAAATCTTaGTGTCCAGAGGGCTGGGCT +
Preference number: 2 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLSLAKS*CPEGWA
Trigger: AGCCCAGCCCTCTGGACAGCAAGATTTTGCTAGACT...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR GCA 90 bp AGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTCTGACGATGGCTGTTTaGTCCTGTTTCTTCTCCTTT +
Preference number: 2 (lower is better)
Translates to: RHHTLGSTVAHTEYTSHCLTMAV*SCFFSF
Trigger: AAAGGAGAAGAAACAGGAGCAAACAGCCATCGTCAG...ACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR TCA 90 bp TGCTTCCAGTGTGCTGACGATGGCTGTTTGCTCCTGTTTCTTCTCCTTTTTATTCCAAGGCCCAGCTCATaGCAGGAAGTTATTTTGGGT +
Preference number: 2 (lower is better)
Translates to: CFQCADDGCLLLFLLLFIPRPSS*QEVILG
Trigger: ACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTGG...AATAAAAAGGAGAAGAAACAGGAGCAAACAGCCATCGTCAGCACACTGGAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CCA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTCTAGAAATTTCTCTTTaGGTTAGAATCGCACCTCGG +
Preference number: 2 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFLEISL*VRIAPR
Trigger: CCGAGGTGCGATTCTAACCCAAAGAGAAATTTCTAG...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp CAGCCAGGAGGCTCCAGGTGGGAGGCACAGGTTCGCTaGTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCT +
Preference number: 3 (lower is better)
Translates to: QPGGSRWEAQVR*WRHRCGRSDWA
Trigger: AGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACCTGGAGCCTCCTGGCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp CTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTaGGAACCTGGCCTGTCATTGGGATCTGAGGCCCCC +
Preference number: 3 (lower is better)
Translates to: LSRRRPQVGASH*EPGLSLGSEAP
Trigger: GGGGGCCTCAGATCCCAATGACAGGCCAGGTTCCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp CCAGGAGGCTCCAGGTGGGAGGCACAGGTTCGCTGCTaGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACT +
Preference number: 3 (lower is better)
Translates to: PGGSRWEAQVRC*RHRCGRSDWAT
Trigger: AGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACCTGGAGCCTCCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGTGGTGTGCTCCTTCCTaGGCATCTCACCAGGTGGCC +
Preference number: 3 (lower is better)
Translates to: AMERICPVVAHRWGRATGWCAPS*ASHQVA
Trigger: GGCCACCTGGTGAGATGCCAAGGAAGGAGCACACCA...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp TGGCCTTGGTGGACAAGTGCCCATAGGAGAGAGCGGTaGGGCAGCGAGAGCAGGGGCTGCTGGGTGGTAGTG +
Preference number: 3 (lower is better)
Translates to: WPWWTSAHRRER*GSESRGCWVVV
Trigger: CACTACCACCCAGCAGCCCCTGCTCTCGCTGCCCCACCGCTCTCTCCTATGGGCACTTGTCCACCAAGGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTaGGGGCGAGCCACTGGGAACCTGGCCTGTCATTGG +
Preference number: 3 (lower is better)
Translates to: AMERICPVVAHR*GRATGNLACHW
Trigger: CCAATGACAGGCCAGGTTCCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp ACAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTaGCTGGGCTACTCGCCAGTCGCCTCAGGTATTGAG +
Preference number: 3 (lower is better)
Translates to: TGSLLAPPVWEE*LGYSPVASGIE
Trigger: CTCAATACCTGAGGCGACTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp CATAGGAGAGAGCGGTGGGGCAGCGAGAGCAGGGGCTaGTGGGTGGTAGTGTGTCGCACAGGTTCCCTAGGT +
Preference number: 3 (lower is better)
Translates to: HRRERWGSESRG*WVVVCRTGSLG
Trigger: ACCTAGGGAACCTGTGCGACACACTACCACCCAGCAGCCCCTGCTCTCGCTGCCCCACCGCTCTCTCCTATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp GCTGATGTGCTCAGCAGCCTTGCCCCTCCGACGGTGTaGCCTTGGTGGACAAGTGCCCATAGGAGAGAGCGG +
Preference number: 3 (lower is better)
Translates to: ADVLSSLAPPTV*PWWTSAHRRER
Trigger: CCGCTCTCTCCTATGGGCACTTGTCCACCAAGGCCACACCGTCGGAGGGGCAAGGCTGCTGAGCACATCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGTCGGCAACAGTTTCATaGTGCAGTGAGGTCCAGGCA +
Preference number: 3 (lower is better)
Translates to: AMERICPVVAHRWGRATGSATVS*CSEVQA
Trigger: TGCCTGGACCTCACTGCACAATGAAACTGTTGCCGA...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp GGGCTCCTTGGTTGGTGTCACATCAGAAGGCTGATGTaGTCAGCAGCCTTGCCCCTCCGACGGTGTGGCCTT +
Preference number: 3 (lower is better)
Translates to: GLLGWCHIRRLM*SAALPLRRCGL
Trigger: AAGGCCACACCGTCGGAGGGGCAAGGCTGCTGAGCACATCAGCCTTCTGATGTGACACCAACCAAGGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp TCCTCATCCCGCCCCGCGCTCTCCTGCAGGGTTAGCTaGTGTCCTGGTTTCTTCCGGTTGAGCTCTGTAGCT +
Preference number: 3 (lower is better)
Translates to: SSSRPALSCRVS*CPGFFRLSSVA
Trigger: AGCTACAGAGCTCAACCGGAAGAAACCAGGACATCAGCTAACCCTGCAGGAGAGCGCGGGGCGGGATGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp CCTCTCGAAAGATGCAACTGCCCAACAGGTGCAGGGTaGAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCT +
Preference number: 3 (lower is better)
Translates to: PLERCNCPTGAG*REDRALPNPLA
Trigger: AGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCACCCTGCACCTGTTGGGCAGTTGCATCTTTCGAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp CAGGGTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTaGCTCGTGGTATATCCCAAGGCCCAGCTCATGACA +
Preference number: 3 (lower is better)
Translates to: QGEGKTGLSPIP*LVVYPKAQLMT
Trigger: TGTCATGAGCTGGGCCTTGGGATATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp GGAGTGACTGGGCTACTCGCCAGTCGCCTCAGGTATTaGGGGCTCCAGCAAGTGGGAAGACTTGGCCTTAAC +
Preference number: 3 (lower is better)
Translates to: GVTGLLASRLRY*GLQQVGRLGLN
Trigger: GTTAAGGCCAAGTCTTCCCACTTGCTGGAGCCCTCAATACCTGAGGCGACTGGCGAGTAGCCCAGTCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp GTGTGCGTGTGCGTGTGCGCGTGCGTGCTTGCGTGGTaGTGTGGGAAGGGGTATATGAAGGCAGGGAGAAAA +
Preference number: 3 (lower is better)
Translates to: VCVCVCACVLAW*CGKGYMKAGRK
Trigger: TTTTCTCCCTGCCTTCATATACCCCTTCCCACATCACCACGCAAGCACGCACGCGCACACGCACACGCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp ATAAGGTGTGTGCGTGTGCGTGTGCGCGTGCGTGCTTaGGTGGTGATGTGGGAAGGGGTATATGAAGGCAGG +
Preference number: 3 (lower is better)
Translates to: IRCVRVRVRVRA*VVMWEGVYEGR
Trigger: CCTGCCTTCATATACCCCTTCCCACATCACCACGCAAGCACGCACGCGCACACGCACACGCACACACCTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp CAGGGATCCTCTCGAAAGATGCAACTGCCCAACAGGTaGAGGGTGAAGGGAAGACAGGGCTCTCCCCAATCC +
Preference number: 3 (lower is better)
Translates to: QGSSRKMQLPNR*RVKGRQGSPQS
Trigger: GGATTGGGGAGAGCCCTGTCTTCCCTTCACCCTGCACCTGTTGGGCAGTTGCATCTTTCGAGAGGATCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp AGTCCCCAGCTCAGAGAAGAATGGATGGCTGTGTACTaGGAGGAGGAGGGGCTTGCTCTCCCAAGCACCATG +
Preference number: 3 (lower is better)
Translates to: SPQLREEWMAVY*EEEGLALPSTM
Trigger: CATGGTGCTTGGGAGAGCAAGCCCCTCCTCCTCCCAGTACACAGCCATCCATTCTTCTCTGAGCTGGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp GTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCGTGGTATATCCCAAGGCCTGGTTTCTTCCGGTaGAGCTCTGTAGCTTTCCCT +
Preference number: 3 (lower is better)
Translates to: VKGRQGSPQSPGSWYIPRPGFFR*SSVAFP
Trigger: AGGGAAAGCTACAGAGCTCAACCGGAAGAAACCAGG...CCTTGGGATATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp CTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTTaGTGTCCAGAGGGCTGGGCTCCTTGGTTGGTGTCA +
Preference number: 3 (lower is better)
Translates to: LWPSSHPSLAKS*CPEGWAPWLVS
Trigger: TGACACCAACCAAGGAGCCCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR GCA 72 bp ACACAGACCAAGACACAAATAGCTCCCGGCCCACGCTaGTTCCAGTGTGCTGACGATGGCTGTTTGCTCCTG +
Preference number: 3 (lower is better)
Translates to: TQTKTQIAPGPR*FQCADDGCLLL
Trigger: CAGGAGCAAACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTTGGTCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp CAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTaGAGTCCCCAGCTCAGAGAAGAATGGATGGCTGTG +
Preference number: 3 (lower is better)
Translates to: QHSRPHRVHFSL*SPQLREEWMAV
Trigger: CACAGCCATCCATTCTTCTCTGAGCTGGGGACTTCACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp CTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTaGCTCTCACAGTTCGAGAGAACCAGGGATCCTCTC +
Preference number: 3 (lower is better)
Translates to: LERTMAKWQPRP*LSQFERTRDPL
Trigger: GAGAGGATCCCTGGTTCTCTCGAACTGTGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp GGCACAGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCGCTGACGATGGCTGTTaGCTCCTGTTTCTTCTCCTT +
Preference number: 3 (lower is better)
Translates to: GTDITLWAAQSPTQSTLLADDGC*LLFLLL
Trigger: AAGGAGAAGAAACAGGAGCAAACAGCCATCGTCAGC...GAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCTGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR TCA 72 bp ACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTaGCGATGGCTGTTTGCTCCTGTTTCTTCTCCTTTT +
Preference number: 3 (lower is better)
Translates to: TNSSRPTLLPVC*RWLFAPVSSPF
Trigger: AAAAGGAGAAGAAACAGGAGCAAACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp TCGCCAGTCGCCTCAGGTATTGAGGGCTCCAGCAAGTaGGAAGACTTGGCCTTAACAATCATCCTGATTCTA +
Preference number: 3 (lower is better)
Translates to: SPVASGIEGSSK*EDLALTIILIL
Trigger: TAGAATCAGGATGATTGTTAAGGCCAAGTCTTCCCACTTGCTGGAGCCCTCAATACCTGAGGCGACTGGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp GGGAGAAAACTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGGGCTGGGCTCCTTGGTaGGTGTCACATCAGAAGGCT +
Preference number: 3 (lower is better)
Translates to: GRKLMLRLRPGEQTIESRGWAPW*VSHQKA
Trigger: AGCCTTCTGATGTGACACCAACCAAGGAGCCCAGCC...CCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAGTTTTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp CAAGTTTCTCACACACTAACATTCTTAATGGGAAGGTaGGGGCACTTCCTTCCTCTGAGGGTTTTGGAGGAC +
Preference number: 3 (lower is better)
Translates to: QVSHTLTFLMGR*GHFLPLRVLED
Trigger: GTCCTCCAAAACCCTCAGAGGAAGGAAGTGCCCCCACCTTCCCATTAAGAATGTTAGTGTGTGAGAAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR-3UTR CAA 90 bp CAAGGCCCAGCTCATGACAGGAAGTTATTTTGGGTTAGCTCCTACTTCTTCAGAAGCAAGTGGGAAGACTaGGCCTTAACAATCATCCTG +
Preference number: 3 (lower is better)
Translates to: QGPAHDRKLFWVSSYFFRSKWED*ALTIIL
Trigger: CAGGATGATTGTTAAGGCCAAGTCTTCCCACTTGCT...TCTGAAGAAGTAGGAGCTAACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp AAACTTTTTCTGGTTCTCGAGAGAACAATGGCAAAATaGCAGCCTAGGCCTTGGCTCTCACAGTTCGAGAGA +
Preference number: 3 (lower is better)
Translates to: KLFLVLERTMAK*QPRPWLSQFER
Trigger: TCTCTCGAACTGTGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAAAAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp GCCTTAACAATCATCCTGATTCTAGAAATTTCTCTTTaGGTTAGAATCGCACCTCGGAGGCTTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: ALTIILILEISL*VRIAPRRLVCV
Trigger: CACACACACAAGCCTCCGAGGTGCGATTCTAACCCAAAGAGAAATTTCTAGAATCAGGATGATTGTTAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp ATATCCCAAGGCCCAGCTCATGACAGGAAGTTATTTTaGGTTAGCTCCTACTTCTTCAGACAAGCAGATATG +
Preference number: 3 (lower is better)
Translates to: ISQGPAHDRKLF*VSSYFFRQADM
Trigger: CATATCTGCTTGTCTGAAGAAGTAGGAGCTAACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTGGGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CCA 72 bp AGAAACCAATGTCTTTCTTTAGCACAAACACAGCAGTaGCCCATGGCAATCAGACGTCATTTACACAACGCT +
Preference number: 3 (lower is better)
Translates to: RNQCLSLAQTQQ*PMAIRRHLHNA
Trigger: AGCGTTGTGTAAATGACGTCTGATTGCCATGGGCCACTGCTGTGTTTGTGCTAAAGAAAGACATTGGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GGTGGGAGGCACAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGAGACAGTCGTGTGCTTaGCGAAAGCCACGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: GGRHRFAAGATGVGGVTGRQSCA*RKPRPL
Trigger: CAGGGGACGTGGCTTTCGTCAAGCACACGACTGTCT...CCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGATCTGCTCCATGCAGTaGTCAGGGGACTCGGCCGAC +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQICSMQ*SGDSAD
Trigger: GTCGGCCGAGTCCCCTGAGCACTGCATGGAGCAGAT...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGTCTTGCCACCTGAGGTaGGAAGCCCAAGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQSCHLR*EAQGSG
Trigger: TCCTGAGCCTTGGGCTTCTCACCTCAGGTGGCAAGA...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGCTGACATCAGGGACTTaGCCCAGGAAGGCAGGGTGT +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQLTSGT*PRKAGC
Trigger: ACACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAG...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGCGGTTAATGCCTGTGTaGCAGGACTTGACGCCCTTC +
Preference number: 4 (lower is better)
Translates to: AMERICPVVAHRWGRATGRLMPV*QDLTPF
Trigger: GAAGGGCGTCAAGTCCTGCCACACAGGCATTAACCG...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGCAGCCCGTGCCCCATTaGGGCACAGTAGTTCATAGT +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQQPVPH*GTVVHS
Trigger: ACTATGAACTACTGTGCCCCAATGGGGCACGGGCTG...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCTGGCACCGGAGCACTGCTaGGACAACATCCCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VCSFLGISPGGRYRGWKLAPEHC*DNIPSS
Trigger: GCTGGAGGGGATGTTGTCTCAGCAGTGCTCCGGTGC...CAGCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGCTGGCATTGAAGAACTaGCTCACCGCTGTGAGGACA +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQLALKN*LTAVRT
Trigger: TGTCCTCACAGCGGTGAGCCAGTTCTTCAATGCCAG...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGCATGACAGCGTGGGATaGCATTTGTGCCAGGTTGCA +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQHDSVG*HLCQVA
Trigger: TGCAACCTGGCACAAATGCCATCCCACGCTGTCATG...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTACTCGCCAGTCTCCAAACAGGTCCTaGGCCTTGTCCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: QVRCWRHRCGRSDWATRQSPNRS*ALSRSP
Trigger: TGGACTTCTGGACAAGGCCCAGGACCTGTTTGGAGA...CTGGCGAGTAGCCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGCATTGGAATTCCTCCTaGCCACAGCCACGGCATAAT +
Preference number: 4 (lower is better)
Translates to: AMERICPVVAHRWGRATGHWNSS*PQPRHN
Trigger: ATTATGCCGTGGCTGTGGTCAGGAGGAATTCCAATG...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCTGGTCACAGCGTCAGTGTaGCCAGCCTGGATCTGCTCC +
Preference number: 4 (lower is better)
Translates to: VCSFLGISPGGRYRGWKLVTASV*PAWICS
Trigger: GGAGCAGATCCAGGCTGGGCACACTGACGCTGTGAC...CAGCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp CGCACAGGTTCCCTAGGTTGGTGGTGTGCTCCTTCCTaGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: RTGSLGWWCAPS*ASHQVAGTEAG
Trigger: TCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACACCACCAACCTAGGGAACCTGTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGAACCTGGCCTGTCATTGGGATAAGCTGCTGTCTTCATaGCTGAACAGAAGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: VVAHRWGRATGNLACHWDKLLSS*LNRSWP
Trigger: AGGCCAGCTTCTGTTCAGCCATGAAGACAGCAGCTT...ATCCCAATGACAGGCCAGGTTCCCAGTGGCTCGCCCCCACCTGTGGGCGACGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GCCATGGAAAGGATCTGTCCCGTCGTCGCCCACAGGTGGGGGCGAGCCACTGGGTTCCAGGGACACAGCTaGCTCCAAAATAATCACCAA +
Preference number: 4 (lower is better)
Translates to: AMERICPVVAHRWGRATGFQGHS*LQNNHQ
Trigger: TTGGTGATTATTTTGGAGGCAGCTGTGTCCCTGGAA...CCCAGTGGCTCGCCCCCACCTGTGGGCGACGACGGGACAGATCCTTTCCATGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GTGTACTGGGAGGAGGAGGGGCTTGCTCTCCCAAGCACCATGGTGACCGATTTTGACTTCCCCCACCACTaGCTTCAGGCCGTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: VYWEEEGLALPSTMVTDFDFPHH*LQAVLL
Trigger: AAGGAGCACGGCCTGAAGCCAGTGGTGGGGGAAGTC...AAAATCGGTCACCATGGTGCTTGGGAGAGCAAGCCCCTCCTCCTCCCAGTACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp TGGTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCATATCTCCACACTTCTaGATCTCGGGCGCTGACAGC +
Preference number: 4 (lower is better)
Translates to: WCAPSLASHQVAGTEAGSISPHF*ISGADS
Trigger: GCTGTCAGCGCCCGAGATCCAGAAGTGTGGAGATAT...GCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GGTGGGAGGCACAGGTTCGCTGCTGGCGCCACCGGTGTGGGAGGAGTGACTGGGCTTGGCTGTGATATTTaGAGGAGTCAAACATTTGGA +
Preference number: 4 (lower is better)
Translates to: GGRHRFAAGATGVGGVTGLGCDI*RSQTFG
Trigger: TCCAAATGTTTGACTCCTCCAAATATCACAGCCAAG...CCCAGTCACTCCTCCCACACCGGTGGCGCCAGCAGCGAACCTGTGCCTCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp GCTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTaGCTGTCCAGAGGGCTGGGCTCCTTGGTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: ALAFLPSQSSKI*LSRGLGSLVGV
Trigger: GACACCAACCAAGGAGCCCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTACTGACCACCACAGCATaGGCAGGCACCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLLTTTA*AGTLAR
Trigger: CCTGGCCAAGGTGCCTGCTCATGCTGTGGTGGTCAG...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTGGCACGCAGCTGGCATTaGAGAACTGGCTCACCGCTG +
Preference number: 4 (lower is better)
Translates to: DITLWAAQSPTQSTLLTVARSWH*RTGSPL
Trigger: CAGCGGTGAGCCAGTTCTTCAATGCCAGCTGCGTGC...CACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp CCACGGGAGCCGTTAAACAGGATAGTTTCCACCCTGCATCAAGTTTCTCACACAGCGAGGAAGGAGGCCTaGAGCCAGGGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: PREPLNRIVSTLHQVSHTARKEA*SQGQQE
Trigger: CTCCTGCTGACCCTGGCTGCAGGCCTCCTTCCTCGC...TGTGTGAGAAACTTGATGCAGGGTGGAAACTATCCTGTTTAACGGCTCCCGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GGGGCTTGCTCTCCCAAGCACCATGGTGACCGATTTTCCTCAGGATTGTGTGACATGAGCTGGACACAGTaGTCAGCGGAGTTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: GACSPKHHGDRFSSGLCDMSWTQ*SAELPW
Trigger: CCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCAT...GTCACACAATCCTGAGGAAAATCGGTCACCATGGTGCTTGGGAGAGCAAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp ATGGGAAGGTGGGGGCACTTCCTTCCTCTGAGGGTTTaGGAGGACTTCATCCCCACAGTACAGCTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: MGRWGHFLPLRV*EDFIPTVQLWP
Trigger: AGGCCAGAGCTGTACTGTGGGGATGAAGTCCTCCAAAACCCTCAGAGGAAGGAAGTGCCCCCACCTTCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTGCATCCATGTCACCCCTaGCCACCACAGCATGAGCAG +
Preference number: 4 (lower is better)
Translates to: DITLWAAQSPTQSTLLTVHPCHP*PPQHEQ
Trigger: CTGCTCATGCTGTGGTGGTCAGGGGTGACATGGATG...CACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp CTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTTGCTGTCCAGAGGGCTGGCCTCGCTCATGTCTTTaGACTTCTGCTGCTCTGCGT +
Preference number: 4 (lower is better)
Translates to: LWPSSHPSLAKSCCPEGWPRSCL*TSAALR
Trigger: ACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGG...CCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GGCACAGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCTCCAGCACTGTGCTGTaGTTCACGAAGGCCACGTCA +
Preference number: 4 (lower is better)
Translates to: GTDITLWAAQSPTQSTLLSSTVL*FTKATS
Trigger: TGACGTGGCCTTCGTGAAGCACAGCACAGTGCTGGA...GAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCTGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTGAGAGGAGCCCCTTCATaGCCTGCAGGTATTCCTGGC +
Preference number: 4 (lower is better)
Translates to: DITLWAAQSPTQSTLLTVRGAPS*PAGIPG
Trigger: GCCAGGAATACCTGCAGGCCATGAAGGGGCTCCTCT...CACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp GCAAAATCTTGCTGTCCAGAGGGCTGGGCTCCTTGGTaGGTGTCACATCAGAAGGCTGATGTGCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: AKSCCPEGWAPW*VSHQKADVLSS
Trigger: GCTGCTGAGCACATCAGCCTTCTGATGTGACACCAACCAAGGAGCCCAGCCCTCTGGACAGCAAGATTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CCACGGGAGCCGTTAAACAGGATAGTTTCCACCCTGCATCAAGTTTCTCACACAGAAGCTCGTCCAGGGTaGAGGAGTAGGAGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: PREPLNRIVSTLHQVSHTEARPG*RSRSCP
Trigger: GGGACAGCTCCTACTCCTTCACCCTGGACGAGCTTC...TGTGTGAGAAACTTGATGCAGGGTGGAAACTATCCTGTTTAACGGCTCCCGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp TTTCTGGTTCTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTGGCTCTCATGCCCAGCCTGGATCTaGTCCATGCAGTGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: FLVLERTMAKWQPRPWLSCPAWI*SMQCSG
Trigger: CCCTGAGCACTGCATGGAGCAGATCCAGGCTGGGCA...TGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTTGCTGTCCAGAGGGCTGGCCTTCGTTGAGCAGTTaGAATATGAGACCGCCATCC +
Preference number: 4 (lower is better)
Translates to: LWPSSHPSLAKSCCPEGWPSLSS*NMRPPS
Trigger: GGATGGCGGTCTCATATTCCAACTGCTCAACGAAGG...CCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CTTCCTTCCTCTGAGGGTTTTGGAGGACTTCATCCCCACAGTACAGCTCTGGCCAGTTCTGTGTGGCAATaGGCACAAGCTCCAAGGTGG +
Preference number: 4 (lower is better)
Translates to: LPSSEGFGGLHPHSTALASSVWQ*AQAPRW
Trigger: CCACCTTGGAGCTTGTGCCCATTGCCACACAGAACT...GGCCAGAGCTGTACTGTGGGGATGAAGTCCTCCAAAACCCTCAGAGGAAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp AAGACACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTGACGATGGCTGTCCTCATAGTTCTGTGTaGCAATGGGCACAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: KTQIAPGPRCFQCADDGCPHSSV*QWAQAP
Trigger: TGGAGCTTGTGCCCATTGCCACACAGAACTATGAGG...ACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp TCACACCTGAAAGGCACACGGCACAGACATCACACTTaGGGCAGCACAGTCGCCCACACAGAGTACACTTCT +
Preference number: 4 (lower is better)
Translates to: SHLKGTRHRHHT*GSTVAHTEYTS
Trigger: AGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCTGTGCCGTGTGCCTTTCAGGTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GGGGCTTGCTCTCCCAAGCACCATGGTGACCGATTTTCCTCAGGATTGTGTGACCCAAGGTGGAGTCTTTaGACAGCAAGTTCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: GACSPKHHGDRFSSGLCDPRWSL*TASSSG
Trigger: GCCAGAAGAACTTGCTGTTCAAAGACTCCACCTTGG...GTCACACAATCCTGAGGAAAATCGGTCACCATGGTGCTTGGGAGAGCAAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp ACCAAGACACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTGACGATGGCCAGGGTGATGGCATCTaGTTTTTGTTCCTTGATGAG +
Preference number: 4 (lower is better)
Translates to: TKTQIAPGPRCFQCADDGQGDGI*FLFLDE
Trigger: CTCATCAAGGAACAAAAAGCAGATGCCATCACCCTG...GCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTCACCTCCCAGCCCGCTaGGCTGCCCAAGTAGGGGTG +
Preference number: 4 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFHLPAR*AAQVGV
Trigger: CACCCCTACTTGGGCAGCCCAGCGGGCTGGGAGGTG...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp GACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTGGAAGATGTTGGTGTCTaGACGGACCATGACAGCGTG +
Preference number: 4 (lower is better)
Translates to: DITLWAAQSPTQSTLLTVEDVGV*TDHDSV
Trigger: CACGCTGTCATGGTCCGTCCAGACACCAACATCTTC...CACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CTCTGGCCTTCCTCCCATCCCAGTCTAGCAAAATCTTGCTGTCCAGAGGGCTGGCAAGGCTCAGGATTGTaGCCATTTGTGTTCTCAAAG +
Preference number: 4 (lower is better)
Translates to: LWPSSHPSLAKSCCPEGWQGSGL*PFVFSK
Trigger: CTTTGAGAACACAAATGGTCACAATCCTGAGCCTTG...CCAGCCCTCTGGACAGCAAGATTTTGCTAGACTGGGATGGGAGGAAGGCCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GGGAGAAAACTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGGCCGTGCTCCTTCCCTaGCTCATAGATGGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: GRKLMLRLRPGEQTIESRAVLLP*LIDGPS
Trigger: GGAGGGGCCATCTATGAGGCAGGGAAGGAGCACGGC...CCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAGTTTTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAGGAGCTGTCCCTTCTTaGCACAGCCACCACAAAGTA +
Preference number: 4 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLGAVPS*HSHHKV
Trigger: TACTTTGTGGTGGCTGTGGCAAGAAGGGACAGCTCC...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CCTACTTCTTCAGACAAGCAGATATGTTCAGATATGTTCACACGGATAAGGTGTGCTCCACAAGGCACCTaGAGGCCCCGCTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: PTSSDKQICSDMFTRIRCAPQGT*RPRCSR
Trigger: ACGGCTACAGCGGGGCCTTCAGGTGCCTTGTGGAGC...ACACCTTATCCGTGTGAACATATCTGAACATATCTGCTTGTCTGAAGAAGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp AGACATCACACTTTGGGCAGCACAGTCGCCCACACAGAGTACACTTCTCACTGTATGTCTTTGCACTTCTaGTGCTCTGCGTCTGAGATG +
Preference number: 4 (lower is better)
Translates to: RHHTLGSTVAHTEYTSHCMSLHF*CSASEM
Trigger: CATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACAT...ACAGTGAGAAGTGTACTCTGTGTGGGCGACTGTGCTGCCCAAAGTGTGATGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CAAGGCCCAGCTCATGACAGGAAGTTATTTTGGGTTAGCTCCTACTTCTTCAGATGCTGTCTTCATGGCTaGACAGAAGCTGGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: QGPAHDRKLFWVSSYFFRCCLHG*TEAGLR
Trigger: ACGAAGGCCAGCTTCTGTTCAGCCATGAAGACAGCA...TCTGAAGAAGTAGGAGCTAACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp TTTCTGGTTCTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTGGCTCTCAGCATTTGTGCCAGGTTaGAAGCTTGGAACTGGTCTA +
Preference number: 4 (lower is better)
Translates to: FLVLERTMAKWQPRPWLSAFVPG*KLGTGL
Trigger: TAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGC...TGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp GGGGTATATGAAGGCAGGGAGAAAACTAATGTTGAGACTGAGACCAGGAGAGCAAGCAGGTCTTGGCTGTaGTATTTGGAGGAGTCAAAC +
Preference number: 4 (lower is better)
Translates to: GVYEGREKTNVETETRRASRSWL*YLEESN
Trigger: GTTTGACTCCTCCAAATATCACAGCCAAGACCTGCT...TGCTCTCCTGGTCTCAGTCTCAACATTAGTTTTCTCCCTGCCTTCATATACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CCTACTTCTTCAGACAAGCAGATATGTTCAGATATGTTCACACGGATAAGGTGTCGAATGCCAGCTCCCTaGAAGGCCTCGCTCATGTCT +
Preference number: 4 (lower is better)
Translates to: PTSSDKQICSDMFTRIRCRMPAP*KASLMS
Trigger: AGACATGAGCGAGGCCTTCCAGGGAGCTGGCATTCG...ACACCTTATCCGTGTGAACATATCTGAACATATCTGCTTGTCTGAAGAAGTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp TTTCTGGTTCTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTGGCTCTCAAAACCGTTCTTGTTATaGTCGTCTCCAAACAGGTCC +
Preference number: 4 (lower is better)
Translates to: FLVLERTMAKWQPRPWLSKPFLL*SSPNRS
Trigger: GGACCTGTTTGGAGACGACCATAACAAGAACGGTTT...TGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GTGGTGATGTGGGAAGGGGTATATGAAGGCAGGGAGAAAACTAATGTTGAGACTCCACAAAGTAGGAATTaGTCCTGTCCTCCTCAGCAT +
Preference number: 4 (lower is better)
Translates to: VVMWEGVYEGREKTNVETPQSRN*SCPPQH
Trigger: ATGCTGAGGAGGACAGGAGCAATTCCTACTTTGTGG...AGTCTCAACATTAGTTTTCTCCCTGCCTTCATATACCCCTTCCCACATCACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTCAGAGGGACTCGGAATaGCTGGTTTCTCCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFQRDSE*LVSPVP
Trigger: TGGAACAGGAGAAACCAGCCATTCCGAGTCCCTCTG...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp GGGAGAAAACTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGTCTTTGCACTTCTGCTaGTCTGCGTCTGAGATGGTA +
Preference number: 4 (lower is better)
Translates to: GRKLMLRLRPGEQTIESRSLHFC*SASEMV
Trigger: TACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGA...CCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAGTTTTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR TCA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTGAAGTCCATACACAGTaGAGATGTTGGTGTCTGGAC +
Preference number: 4 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFEVHTQ*RCWCLD
Trigger: GTCCAGACACCAACATCTTCACTGTGTATGGACTTC...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
3UTR CAA 72 bp GGGAAGGGGTATATGAAGGCAGGGAGAAAACTAATGTaGAGACTGAGACCAGGAGAGCAAACAATAGAATCT +
Preference number: 4 (lower is better)
Translates to: GKGYMKAGRKLM*RLRPGEQTIES
Trigger: AGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAGTTTTCTCCCTGCCTTCATATACCCCTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR GCA 90 bp AAGTGGGAAGACTTGGCCTTAACAATCATCCTGATTCTAGAAATTTCTCTTTGGGTGGGATGGCATTTGTaGCAGGTTGCAAGCTTGGAA +
Preference number: 4 (lower is better)
Translates to: KWEDLALTIILILEISLWVGWHL*QVASLE
Trigger: TTCCAAGCTTGCAACCTGGCACAAATGCCATCCCAC...CCAAAGAGAAATTTCTAGAATCAGGATGATTGTTAAGGCCAAGTCTTCCCACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CCA 90 bp AAACCAATGTCTTTCTTTAGCACAAACACAGCAGTGGCCCATGGCAATCAGACGGAGGAGTCAAACATTTaGAAACCGTTCTTGTTATGG +
Preference number: 4 (lower is better)
Translates to: KPMSFFSTNTAVAHGNQTEESNI*KPFLLW
Trigger: CCATAACAAGAACGGTTTCCAAATGTTTGACTCCTC...CGTCTGATTGCCATGGGCCACTGCTGTGTTTGTGCTAAAGAAAGACATTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp GAAGCCCCGCTGGATGAGGGAGCCGATGGGCACCTCCCAGCCCGCTaGGCTGCCCAAGTAGGGGTGGCAGGAACGCTTGCCGCGAAGCTC +
Preference number: 5 (lower is better)
Translates to: EAPLDEGADGHLPAR*AAQVGVAGTLAAKL
Trigger: GAGCTTCGCGGCAAGCGTTCCTGCCACCCCTACTTGGGCAGCCCAGCGGGCTGGGAGGTGCCCATCGGCTCCCTCATCCAGCGGGGCTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp AGCATACAGCTCCCCGGCCGCCGGAACCAGGCCGTACACCTTTCCTaGCCTGTAAATGTCCTCGCCCCTCAGAGTCACAGCGTCAGTGTG +
Preference number: 5 (lower is better)
Translates to: SIQLPGRRNQAVHLS*PVNVLAPQSHSVSV
Trigger: CACACTGACGCTGTGACTCTGAGGGGCGAGGACATTTACAGGGCAGGAAAGGTGTACGGCCTGGTTCCGGCGGCCGGGGAGCTGTATGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp CAGCATGAGCAGGCACCTTGGCCAGGTGGCAACGTCTCCACTCAGTaGTGTCGGCTCGGCTGCCATCCCTGCATAGTAGCTGGAAGTCCT +
Preference number: 5 (lower is better)
Translates to: QHEQAPWPGGNVSTQ*CRLGCHPCIVAGSP
Trigger: AGGACTTCCAGCTACTATGCAGGGATGGCAGCCGAGCCGACATCACTGAGTGGAGACGTTGCCACCTGGCCAAGGTGCCTGCTCATGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp CCAAGTAGGGGTGGCAGGAACGCTTGCCGCGAAGCTCGTCCAGGGTaGAGGAGTAGGAGCTGTCCCTTCTTGCCACAGCCACCACAAAGT +
Preference number: 5 (lower is better)
Translates to: PSRGGRNACREARPG*RSRSCPFLPQPPQS
Trigger: ACTTTGTGGTGGCTGTGGCAAGAAGGGACAGCTCCTACTCCTTCACCCTGGACGAGCTTCGCGGCAAGCGTTCCTGCCACCCCTACTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp TGCCCCAGGAAGGCAGGGTGTTTCCATCAGTATTTTCCAGCACTGTaGTGTGCTTCACGAAGGCCACGTCACCGGCTCCTTCCGCCAGGC +
Preference number: 5 (lower is better)
Translates to: CPRKAGCFHQYFPAL*CASRRPRHRLLPPG
Trigger: GCCTGGCGGAAGGAGCCGGTGACGTGGCCTTCGTGAAGCACAGCACAGTGCTGGAAAATACTGATGGAAACACCCTGCCTTCCTGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CTCCACTCAGTGATGTCGGCTCGGCTGCCATCCCTGCATAGTAGCTaGAAGTCCTCTGACATCAGGGACTTGCCCCAGGAAGGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: LHSVMSARLPSLHSS*KSSDIRDLPQEGRV
Trigger: CACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCAGGGATGGCAGCCGAGCCGACATCACTGAGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCGTGGTATATCCCAAGGCCTGTGTGGCAGGACTaGACGCCCTTCAGGGTGTTG +
Preference number: 5 (lower is better)
Translates to: VKGRQGSPQSPGSWYIPRPVWQD*TPFRVL
Trigger: CAACACCCTGAAGGGCGTCAAGTCCTGCCACACAGG...CCTTGGGATATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GTGTGCTCCTTCCTTGGCATCTCACCAGGTGGCCGGTACAGAGGCTGGAAGCTGCTGCTCCCCACACATTaGTTGCGGCCCTTCTCGTCT +
Preference number: 5 (lower is better)
Translates to: VCSFLGISPGGRYRGWKLLLPTH*LRPFSS
Trigger: AGACGAGAAGGGCCGCAACAAATGTGTGGGGAGCAG...CAGCTTCCAGCCTCTGTACCGGCCACCTGGTGAGATGCCAAGGAAGGAGCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp AGTGGTCAGCGGAGTTGCCCTGGACGCAGAGAAGGGAAGGACGAATaGCAGCTCCCTGGAAGGCCTCGCTCATGTCTTTGCACTTCTGCT +
Preference number: 5 (lower is better)
Translates to: SGQRSCPGRREGKDE*QLPGRPRSCLCTSA
Trigger: AGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAGGGAGCTGGCATTCGTCCTTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp GTCATAGACTTCCCCCACCACTGGCTTCAGGCCGTGCTCCTTCCCTaGCTCATAGATGGCCCCTCCATCCAGGGTGATGGCATCTGCTTT +
Preference number: 5 (lower is better)
Translates to: VIDFPHHWLQAVLLP*LIDGPSIQGDGICF
Trigger: AAAGCAGATGCCATCACCCTGGATGGAGGGGCCATCTATGAGGCAGGGAAGGAGCACGGCCTGAAGCCAGTGGTGGGGGAAGTCTATGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp AGTAGGAGCTGTCCCTTCTTGCCACAGCCACCACAAAGTAGGAATTaGTCCTGTCCTCCTCAGCATACAGCTCCCCGGCCGCCGGAACCA +
Preference number: 5 (lower is better)
Translates to: SRSCPFLPQPPQSRN*SCPPQHTAPRPPEP
Trigger: TGGTTCCGGCGGCCGGGGAGCTGTATGCTGAGGAGGACAGGAGCAATTCCTACTTTGTGGTGGCTGTGGCAAGAAGGGACAGCTCCTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp GATGTTGGTGTCTGGACGGACCATGACAGCGTGGGATGGCATTTGTaGCAGGTTGCAAGCTTGGAACTGGTCTACCTCAGCCCGTGCCCC +
Preference number: 5 (lower is better)
Translates to: DVGVWTDHDSVGWHL*QVASLELVYLSPCP
Trigger: GGGGCACGGGCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CGGACCATGACAGCGTGGGATGGCATTTGTGCCAGGTTGCAAGCTTaGAACTGGTCTACCTCAGCCCGTGCCCCATTGGGGCACAGTAGT +
Preference number: 5 (lower is better)
Translates to: RTMTAWDGICARLQA*NWSTSARAPLGHSS
Trigger: ACTACTGTGCCCCAATGGGGCACGGGCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp TGGATCTGCTCCATGCAGTGCTCAGGGGACTCGGCCGACACACACTaGATTTCCGGCTTGAGATTCTGGCGGCTGAAGGCCACAGCCATA +
Preference number: 5 (lower is better)
Translates to: WICSMQCSGDSADTH*ISGLRFWRLKATAI
Trigger: TATGGCTGTGGCCTTCAGCCGCCAGAATCTCAAGCCGGAAATTCAGTGTGTGTCGGCCGAGTCCCCTGAGCACTGCATGGAGCAGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp AGGCCTCGCTCATGTCTTTGCACTTCTGCTGCTCTGCGTCTGAGATaGTACACCACTGCACCTCCATCACACAGACGACAGTGCGCAGGG +
Preference number: 5 (lower is better)
Translates to: RPRSCLCTSAALRLR*YTTAPPSHRRQCAG
Trigger: CCCTGCGCACTGTCGTCTGTGTGATGGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp CTGGAAGGCCTCGCTCATGTCTTTGCACTTCTGCTGCTCTGCGTCTaGGATGGTACACCACTGCACCTCCATCACACAGACGACAGTGCG +
Preference number: 5 (lower is better)
Translates to: LEGLAHVFALLLLCV*DGTPLHLHHTDDSA
Trigger: CGCACTGTCGTCTGTGTGATGGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp ATGCCAGCTCCCTGGAAGGCCTCGCTCATGTCTTTGCACTTCTGCTaGTCTGCGTCTGAGATGGTACACCACTGCACCTCCATCACACAG +
Preference number: 5 (lower is better)
Translates to: MPAPWKASLMSLHFC*SASEMVHHCTSITQ
Trigger: CTGTGTGATGGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAGGGAGCTGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp CGAATGCCAGCTCCCTGGAAGGCCTCGCTCATGTCTTTGCACTTCTaGTGCTCTGCGTCTGAGATGGTACACCACTGCACCTCCATCACA +
Preference number: 5 (lower is better)
Translates to: RMPAPWKASLMSLHF*CSASEMVHHCTSIT
Trigger: TGTGATGGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAGGGAGCTGGCATTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAGGCACGCAGCTGGCATaGAAGAACTGGCTCACCGCT +
Preference number: 5 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLGTQLA*KNWLTA
Trigger: AGCGGTGAGCCAGTTCTTCAATGCCAGCTGCGTGCC...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCGTGGTATATCCCAAGGCGGACTGTAGCATCTTaGAAAAGCAGGTCTTGGCTG +
Preference number: 5 (lower is better)
Translates to: VKGRQGSPQSPGSWYIPRRTVAS*KSRSWL
Trigger: CAGCCAAGACCTGCTTTTCAAAGATGCTACAGTCCG...CCTTGGGATATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp CAGCCCGTGCCCCATTGGGGCACAGTAGTTCATAGTCTTGCCACCTaGGGTGAGAAGCCCAAGGCTCAGGATTGTGACCATTTGTGTTCT +
Preference number: 5 (lower is better)
Translates to: QPVPHWGTVVHSLAT*GEKPKAQDCDHLCS
Trigger: AGAACACAAATGGTCACAATCCTGAGCCTTGGGCTTCTCACCTCAGGTGGCAAGACTATGAACTACTGTGCCCCAATGGGGCACGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp AGGGTGATGGCATCTGCTTTTTGTTCCTTGATGAGCTGGACACAGTaGTCAGCGGAGTTGCCCTGGACGCAGAGAAGGGAAGGACGAATG +
Preference number: 5 (lower is better)
Translates to: RVMASAFCSLMSWTQ*SAELPWTQRREGRM
Trigger: CATTCGTCCTTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCATCAAGGAACAAAAAGCAGATGCCATCACCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CTGCTGTCTTCATGGCTGAACAGAAGCTGGCCTTCGTTGAGCAGTTaGAATATGAGACCGCCATCCATGTCACCCCTGACCACCACAGCA +
Preference number: 5 (lower is better)
Translates to: LLSSWLNRSWPSLSS*NMRPPSMSPLTTTA
Trigger: TGCTGTGGTGGTCAGGGGTGACATGGATGGCGGTCTCATATTCCAACTGCTCAACGAAGGCCAGCTTCTGTTCAGCCATGAAGACAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CACAGTGAAGATGTTGGTGTCTGGACGGACCATGACAGCGTGGGATaGCATTTGTGCCAGGTTGCAAGCTTGGAACTGGTCTACCTCAGC +
Preference number: 5 (lower is better)
Translates to: HSEDVGVWTDHDSVG*HLCQVASLELVYLS
Trigger: GCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CTGGGCCTTGTCCAGAAGTCCATACACAGTGAAGATGTTGGTGTCTaGACGGACCATGACAGCGTGGGATGGCATTTGTGCCAGGTTGCA +
Preference number: 5 (lower is better)
Translates to: LGLVQKSIHSEDVGV*TDHDSVGWHLCQVA
Trigger: TGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTGTATGGACTTCTGGACAAGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp ATAGTCAGGACCCAGCCAGTCCAGGTATGTGGTTTTCTCCCGGACTaGCACCGCTCGGACTGTAGCATCTTTGAAAAGCAGGTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: IVRTQPVQVCGFLPD*HRSDCSIFEKQVLA
Trigger: AGCCAAGACCTGCTTTTCAAAGATGCTACAGTCCGAGCGGTGCCAGTCCGGGAGAAAACCACATACCTGGACTGGCTGGGTCCTGACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GATTTTCCTCAGGATTGTGTGACTCTGGCTGGGACACTGCCAGGACCTTCTCTAGCCTCGCTCATGTCTTaGCACTTCTGCTGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: DFPQDCVTLAGTLPGPSLASLMS*HFCCSA
Trigger: CGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGC...TAGAGAAGGTCCTGGCAGTGTCCCAGCCAGAGTCACACAATCCTGAGGAAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp GTGAAGGGAAGACAGGGCTCTCCCCAATCCCCTGGCTCGTGGTATATCCCAAGGAGAAGCTGGCCTTCGTaGAGCAGTTGGAATATGAGA +
Preference number: 5 (lower is better)
Translates to: VKGRQGSPQSPGSWYIPRRSWPS*SSWNMR
Trigger: TCTCATATTCCAACTGCTCAACGAAGGCCAGCTTCT...CCTTGGGATATACCACGAGCCAGGGGATTGGGGAGAGCCCTGTCTTCCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 90 bp TGCCATCCCTGCATAGTAGCTGGAAGTCCTCTGACATCAGGGACTTaGCCCAGGAAGGCAGGGTGTTTCCATCAGTATTTTCCAGCACTG +
Preference number: 5 (lower is better)
Translates to: CHPCIVAGSPLTSGT*PRKAGCFHQYFPAL
Trigger: CAGTGCTGGAAAATACTGATGGAAACACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCAGGGATGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 90 bp CCATACACAGTGAAGATGTTGGTGTCTGGACGGACCATGACAGCGTaGGATGGCATTTGTGCCAGGTTGCAAGCTTGGAACTGGTCTACC +
Preference number: 5 (lower is better)
Translates to: PYTVKMLVSGRTMTA*DGICARLQAWNWST
Trigger: GGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTGTATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp TCCAAAATAATCACCAACGGCTTTGAGCACATCACAGCCCATCACTaGCAGATGGCCGCTCTCTACGAGGTAACCGACAGGCACGTTCCA +
Preference number: 5 (lower is better)
Translates to: SKIITNGFEHITAHH*QMAALYEVTDRHVP
Trigger: TGGAACGTGCCTGTCGGTTACCTCGTAGAGAGCGGCCATCTGTCAGTGATGGGCTGTGATGTGCTCAAAGCCGTTGGTGATTATTTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp TTTCTGGTTCTCGAGAGAACAATGGCAAAATGGCAGCCTAGGCCTTGGCTCTCACTCTTGTCACACACATaGTGCCCAGAAGAGTCGCCA +
Preference number: 5 (lower is better)
Translates to: FLVLERTMAKWQPRPWLSLLSHT*CPEESP
Trigger: TGGCGACTCTTCTGGGCACAATGTGTGTGACAAGAG...TGAGAGCCAAGGCCTAGGCTGCCATTTTGCCATTGTTCTCTCGAGAACCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTAGGACATCACAGTCCTaGGGCCGGATGAAGCCCCGC +
Preference number: 5 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFRTSQS*GRMKPR
Trigger: GCGGGGCTTCATCCGGCCCAAGGACTGTGATGTCCT...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp AAGACACAAATAGCTCCCGGCCCACGCTGCTTCCAGTGTGCTGACGATGGCTGTATTTGGAAACCGTTCTaGTTATGGTCGTCTCCAAAC +
Preference number: 5 (lower is better)
Translates to: KTQIAPGPRCFQCADDGCIWKPF*LWSSPN
Trigger: GTTTGGAGACGACCATAACAAGAACGGTTTCCAAAT...ACAGCCATCGTCAGCACACTGGAAGCAGCGTGGGCCGGGAGCTATTTGTGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp CAAGGCCCAGCTCATGACAGGAAGTTATTTTGGGTTAGCTCCTACTTCTTCAGAAGCGTGGGATGGCATTaGTGCCAGGTTGCAAGCTTG +
Preference number: 5 (lower is better)
Translates to: QGPAHDRKLFWVSSYFFRSVGWH*CQVASL
Trigger: CAAGCTTGCAACCTGGCACAAATGCCATCCCACGCT...TCTGAAGAAGTAGGAGCTAACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp CAAGGCCCAGCTCATGACAGGAAGTTATTTTGGGTTAGCTCCTACTTCTTCAGAGGCATTTGTGCCAGGTaGCAAGCTTGGAACTGGTCT +
Preference number: 5 (lower is better)
Translates to: QGPAHDRKLFWVSSYFFRGICAR*QAWNWS
Trigger: AGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCC...TCTGAAGAAGTAGGAGCTAACCCAAAATAACTTCCTGTCATGAGCTGGGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp TCCACCCTGCATCAAGTTTCTCACACACTAACATTCTTAATGGGAAGGTGGGGGGATGGCATCTGCTTTTaGTTCCTTGATGAGCTGGAC +
Preference number: 5 (lower is better)
Translates to: STLHQVSHTLTFLMGRWGDGICF*FLDELD
Trigger: GTCCAGCTCATCAAGGAACAAAAAGCAGATGCCATC...CCCCCACCTTCCCATTAAGAATGTTAGTGTGTGAGAAACTTGATGCAGGGTGGA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp CTAATGTTGAGACTGAGACCAGGAGAGCAAACAATAGAATCTCGGCAACAGTTTAGGAGCTGTCCCTTCTaGCCACAGCCACCACAAAGT +
Preference number: 5 (lower is better)
Translates to: LMLRLRPGEQTIESRQQFRSCPF*PQPPQS
Trigger: ACTTTGTGGTGGCTGTGGCAAGAAGGGACAGCTCCT...AAACTGTTGCCGAGATTCTATTGTTTGCTCTCCTGGTCTCAGTCTCAACATTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 90 bp GGCACCGCTCGGACTGTAGCATCTTTGAAAAGCAGGTCTTGGCTGTaGTATTTGGAGGAGTCAAACATTTGGAAACCGTTCTTGTTATGG +
Preference number: 5 (lower is better)
Translates to: GTARTVASLKSRSWL*YLEESNIWKPFLLW
Trigger: CCATAACAAGAACGGTTTCCAAATGTTTGACTCCTCCAAATATCACAGCCAAGACCTGCTTTTCAAAGATGCTACAGTCCGAGCGGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp ACCCTGCATCAAGTTTCTCACACACTAACATTCTTAATGGGAAGGTGGGGGCACTTTGAAAAGCAGGTCTaGGCTGTGATATTTGGAGGA +
Preference number: 5 (lower is better)
Translates to: TLHQVSHTLTFLMGRWGHFEKQV*AVIFGG
Trigger: TCCTCCAAATATCACAGCCAAGACCTGCTTTTCAAA...GTGCCCCCACCTTCCCATTAAGAATGTTAGTGTGTGAGAAACTTGATGCAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS-3UTR CAA 90 bp CCTACTTCTTCAGACAAGCAGATATGTTCAGATATGTTCACACGGATAAGGTGTGTGTTGATGGTAACATaGGAATTCCTCCTGACCACA +
Preference number: 5 (lower is better)
Translates to: PTSSDKQICSDMFTRIRCVLMVT*EFLLTT
Trigger: TGTGGTCAGGAGGAATTCCAATGTTACCATCAACAC...ACACCTTATCCGTGTGAACATATCTGAACATATCTGCTTGTCTGAAGAAGTAGG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp CTGGATGAGGGAGCCGATGGGCACCTCCCAGCCCGCTaGGCTGCCCAAGTAGGGGTGGCAGGAACGCTTGCC +
Preference number: 6 (lower is better)
Translates to: LDEGADGHLPAR*AAQVGVAGTLA
Trigger: GGCAAGCGTTCCTGCCACCCCTACTTGGGCAGCCCAGCGGGCTGGGAGGTGCCCATCGGCTCCCTCATCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp AGGACATCACAGTCCTTGGGCCGGATGAAGCCCCGCTaGATGAGGGAGCCGATGGGCACCTCCCAGCCCGCT +
Preference number: 6 (lower is better)
Translates to: RTSQSLGRMKPR*MREPMGTSQPA
Trigger: AGCGGGCTGGGAGGTGCCCATCGGCTCCCTCATCCAGCGGGGCTTCATCCGGCCCAAGGACTGTGATGTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp CTCCCCGGCCGCCGGAACCAGGCCGTACACCTTTCCTaGCCTGTAAATGTCCTCGCCCCTCAGAGTCACAGC +
Preference number: 6 (lower is better)
Translates to: LPGRRNQAVHLS*PVNVLAPQSHS
Trigger: GCTGTGACTCTGAGGGGCGAGGACATTTACAGGGCAGGAAAGGTGTACGGCCTGGTTCCGGCGGCCGGGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TCGCCCCTCAGAGTCACAGCGTCAGTGTGCCCAGCCTaGATCTGCTCCATGCAGTGCTCAGGGGACTCGGCC +
Preference number: 6 (lower is better)
Translates to: SPLRVTASVCPA*ICSMQCSGDSA
Trigger: GGCCGAGTCCCCTGAGCACTGCATGGAGCAGATCCAGGCTGGGCACACTGACGCTGTGACTCTGAGGGGCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 72 bp AGACCGCCATCCATGTCACCCCTGACCACCACAGCATaGGCAGGCACCTTGGCCAGGTGGCAACGTCTCCAC +
Preference number: 6 (lower is better)
Translates to: RPPSMSPLTTTA*AGTLARWQRLH
Trigger: GTGGAGACGTTGCCACCTGGCCAAGGTGCCTGCTCATGCTGTGGTGGTCAGGGGTGACATGGATGGCGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 72 bp GGTGGCAGGAACGCTTGCCGCGAAGCTCGTCCAGGGTaGAGGAGTAGGAGCTGTCCCTTCTTGCCACAGCCA +
Preference number: 6 (lower is better)
Translates to: GGRNACREARPG*RSRSCPFLPQP
Trigger: TGGCTGTGGCAAGAAGGGACAGCTCCTACTCCTTCACCCTGGACGAGCTTCGCGGCAAGCGTTCCTGCCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp CTCAGAGTCACAGCGTCAGTGTGCCCAGCCTGGATCTaGTCCATGCAGTGCTCAGGGGACTCGGCCGACACA +
Preference number: 6 (lower is better)
Translates to: LRVTASVCPAWI*SMQCSGDSADT
Trigger: TGTGTCGGCCGAGTCCCCTGAGCACTGCATGGAGCAGATCCAGGCTGGGCACACTGACGCTGTGACTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GAGTCGCCACGGCAGAGGCGACAGAGGGACTCGGAATaGCTGGTTTCTCCTGTTCCAGGGACACAGCTGCCT +
Preference number: 6 (lower is better)
Translates to: ESPRQRRQRDSE*LVSPVPGTQLP
Trigger: AGGCAGCTGTGTCCCTGGAACAGGAGAAACCAGCCATTCCGAGTCCCTCTGTCGCCTCTGCCGTGGCGACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp AAGAACTGGCTCACCGCTGTGAGGACATCACAGTCCTaGGGCCGGATGAAGCCCCGCTGGATGAGGGAGCCG +
Preference number: 6 (lower is better)
Translates to: KNWLTAVRTSQS*GRMKPRWMREP
Trigger: CGGCTCCCTCATCCAGCGGGGCTTCATCCGGCCCAAGGACTGTGATGTCCTCACAGCGGTGAGCCAGTTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TTGATGAGCTGGACACAGTGGTCAGCGGAGTTGCCCTaGACGCAGAGAAGGGAAGGACGAATGCCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: LMSWTQWSAELP*TQRREGRMPAP
Trigger: GGGAGCTGGCATTCGTCCTTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCATCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp CGGACCATGACAGCGTGGGATGGCATTTGTGCCAGGTaGCAAGCTTGGAACTGGTCTACCTCAGCCCGTGCC +
Preference number: 6 (lower is better)
Translates to: RTMTAWDGICAR*QAWNWSTSARA
Trigger: GGCACGGGCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp CCCTGGAAGGCCTCGCTCATGTCTTTGCACTTCTGCTaGTCTGCGTCTGAGATGGTACACCACTGCACCTCC +
Preference number: 6 (lower is better)
Translates to: PWKASLMSLHFC*SASEMVHHCTS
Trigger: GGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp GCTCCCTGGAAGGCCTCGCTCATGTCTTTGCACTTCTaGTGCTCTGCGTCTGAGATGGTACACCACTGCACC +
Preference number: 6 (lower is better)
Translates to: APWKASLMSLHF*CSASEMVHHCT
Trigger: GGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGAGCGAGGCCTTCCAGGGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp TGTCCCTTCTTGCCACAGCCACCACAAAGTAGGAATTaGTCCTGTCCTCCTCAGCATACAGCTCCCCGGCCG +
Preference number: 6 (lower is better)
Translates to: CPFLPQPPQSRN*SCPPQHTAPRP
Trigger: CGGCCGGGGAGCTGTATGCTGAGGAGGACAGGAGCAATTCCTACTTTGTGGTGGCTGTGGCAAGAAGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp CGTAGTATCTCTCCTGGCTGCTCCCCACACATTTGTTaGGGCCCTTCTCGTCTCCCACGCAGAGCGCACATA +
Preference number: 6 (lower is better)
Translates to: RSISPGCSPHIC*GPSRLPRRAHI
Trigger: TATGTGCGCTCTGCGTGGGAGACGAGAAGGGCCGCAACAAATGTGTGGGGAGCAGCCAGGAGAGATACTACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp AAAGACAGTCGTGTGCTTGACGAAAGCCACGTCCCCTaGATGCTCCACAAGGCACCTGAAGGCCCCGCTGTA +
Preference number: 6 (lower is better)
Translates to: KDSRVLDESHVP*MLHKAPEGPAV
Trigger: TACAGCGGGGCCTTCAGGTGCCTTGTGGAGCATGCAGGGGACGTGGCTTTCGTCAAGCACACGACTGTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GGCACGTTCCAGCCCACAGTCCGGTTAATGCCTGTGTaGCAGGACTTGACGCCCTTCAGGGTGTTGATGGTA +
Preference number: 6 (lower is better)
Translates to: GTFQPTVRLMPV*QDLTPFRVLMV
Trigger: TACCATCAACACCCTGAAGGGCGTCAAGTCCTGCCACACAGGCATTAACCGGACTGTGGGCTGGAACGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GTGATGTCGGCTCGGCTGCCATCCCTGCATAGTAGCTaGAAGTCCTCTGACATCAGGGACTTGCCCCAGGAA +
Preference number: 6 (lower is better)
Translates to: VMSARLPSLHSS*KSSDIRDLPQE
Trigger: TTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCAGGGATGGCAGCCGAGCCGACATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TGGGATGGCATTTGTGCCAGGTTGCAAGCTTGGAACTaGTCTACCTCAGCCCGTGCCCCATTGGGGCACAGT +
Preference number: 6 (lower is better)
Translates to: WDGICARLQAWN*STSARAPLGHS
Trigger: ACTGTGCCCCAATGGGGCACGGGCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp TCTGCTTTTTGTTCCTTGATGAGCTGGACACAGTGGTCAGCGGAGTaGCCCTGGACGCAGAGAAGGGAAGGACGAATGCCAGCTCCCTGG +
Preference number: 6 (lower is better)
Translates to: SAFCSLMSWTQWSAE*PWTQRREGRMPAPW
Trigger: CCAGGGAGCTGGCATTCGTCCTTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCATCAAGGAACAAAAAGCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp GAAGATGTTGGTGTCTGGACGGACCATGACAGCGTGGGATGGCATTaGTGCCAGGTTGCAAGCTTGGAACTGGTCTACCTCAGCCCGTGC +
Preference number: 6 (lower is better)
Translates to: EDVGVWTDHDSVGWH*CQVASLELVYLSPC
Trigger: GCACGGGCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp AGGGTGTTTCCATCAGTATTTTCCAGCACTGTGCTGTaGTTCACGAAGGCCACGTCACCGGCTCCTTCCGCC +
Preference number: 6 (lower is better)
Translates to: RVFPSVFSSTVL*FTKATSPAPSA
Trigger: GGCGGAAGGAGCCGGTGACGTGGCCTTCGTGAAGCACAGCACAGTGCTGGAAAATACTGATGGAAACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp GTCTGGACGGACCATGACAGCGTGGGATGGCATTTGTaGCAGGTTGCAAGCTTGGAACTGGTCTACCTCAGC +
Preference number: 6 (lower is better)
Translates to: VWTDHDSVGWHL*QVASLELVYLS
Trigger: GCTGAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp TGTTCCTTGATGAGCTGGACACAGTGGTCAGCGGAGTaGCCCTGGACGCAGAGAAGGGAAGGACGAATGCCA +
Preference number: 6 (lower is better)
Translates to: CSLMSWTQWSAE*PWTQRREGRMP
Trigger: TGGCATTCGTCCTTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCATCAAGGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp GGTGTCTGGACGGACCATGACAGCGTGGGATGGCATTaGTGCCAGGTTGCAAGCTTGGAACTGGTCTACCTC +
Preference number: 6 (lower is better)
Translates to: GVWTDHDSVGWH*CQVASLELVYL
Trigger: GAGGTAGACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 72 bp ATCACCAACGGCTTTGAGCACATCACAGCCCATCACTaGCAGATGGCCGCTCTCTACGAGGTAACCGACAGG +
Preference number: 6 (lower is better)
Translates to: ITNGFEHITAHH*QMAALYEVTDR
Trigger: CCTGTCGGTTACCTCGTAGAGAGCGGCCATCTGTCAGTGATGGGCTGTGATGTGCTCAAAGCCGTTGGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GATGTTGGTGTCTGGACGGACCATGACAGCGTGGGATaGCATTTGTGCCAGGTTGCAAGCTTGGAACTGGTC +
Preference number: 6 (lower is better)
Translates to: DVGVWTDHDSVG*HLCQVASLELV
Trigger: GACCAGTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp ACCCAGCCAGTCCAGGTATGTGGTTTTCTCCCGGACTaGCACCGCTCGGACTGTAGCATCTTTGAAAAGCAG +
Preference number: 6 (lower is better)
Translates to: TQPVQVCGFLPD*HRSDCSIFEKQ
Trigger: CTGCTTTTCAAAGATGCTACAGTCCGAGCGGTGCCAGTCCGGGAGAAAACCACATACCTGGACTGGCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp TGGGCCTTGTCCAGAAGTCCATACACAGTGAAGATGTaGGTGTCTGGACGGACCATGACAGCGTGGGATGGC +
Preference number: 6 (lower is better)
Translates to: WALSRSPYTVKM*VSGRTMTAWDG
Trigger: GCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTGTATGGACTTCTGGACAAGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp AACAGGTCCTGGGCCTTGTCCAGAAGTCCATACACAGTGAAGATGTaGGTGTCTGGACGGACCATGACAGCGTGGGATGGCATTTGTGCC +
Preference number: 6 (lower is better)
Translates to: NRSWALSRSPYTVKM*VSGRTMTAWDGICA
Trigger: GGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTGTATGGACTTCTGGACAAGGCCCAGGACCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 72 bp CCCCATTGGGGCACAGTAGTTCATAGTCTTGCCACCTaGGGTGAGAAGCCCAAGGCTCAGGATTGTGACCAT +
Preference number: 6 (lower is better)
Translates to: PHWGTVVHSLAT*GEKPKAQDCDH
Trigger: ATGGTCACAATCCTGAGCCTTGGGCTTCTCACCTCAGGTGGCAAGACTATGAACTACTGTGCCCCAATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GCATCTGCTTTTTGTTCCTTGATGAGCTGGACACAGTaGTCAGCGGAGTTGCCCTGGACGCAGAGAAGGGAA +
Preference number: 6 (lower is better)
Translates to: ASAFCSLMSWTQ*SAELPWTQRRE
Trigger: TTCCCTTCTCTGCGTCCAGGGCAACTCCGCTGACCACTGTGTCCAGCTCATCAAGGAACAAAAAGCAGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TCATGGCTGAACAGAAGCTGGCCTTCGTTGAGCAGTTaGAATATGAGACCGCCATCCATGTCACCCCTGACC +
Preference number: 6 (lower is better)
Translates to: SWLNRSWPSLSS*NMRPPSMSPLT
Trigger: GGTCAGGGGTGACATGGATGGCGGTCTCATATTCCAACTGCTCAACGAAGGCCAGCTTCTGTTCAGCCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GTGAAGATGTTGGTGTCTGGACGGACCATGACAGCGTaGGATGGCATTTGTGCCAGGTTGCAAGCTTGGAAC +
Preference number: 6 (lower is better)
Translates to: VKMLVSGRTMTA*DGICARLQAWN
Trigger: GTTCCAAGCTTGCAACCTGGCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp CTGCCATCCCTGCATAGTAGCTGGAAGTCCTCTGACATCAGGGACTaGCCCCAGGAAGGCAGGGTGTTTCCATCAGTATTTTCCAGCACT +
Preference number: 6 (lower is better)
Translates to: LPSLHSSWKSSDIRD*PQEGRVFPSVFSST
Trigger: AGTGCTGGAAAATACTGATGGAAACACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCAGGGATGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS TCA 72 bp TGTGACCATTTGTGTTCTCAAAGACAGTCGTGTGCTTaGCGAAAGCCACGTCCCCTGCATGCTCCACAAGGC +
Preference number: 6 (lower is better)
Translates to: CDHLCSQRQSCA*RKPRPLHAPQG
Trigger: GCCTTGTGGAGCATGCAGGGGACGTGGCTTTCGTCAAGCACACGACTGTCTTTGAGAACACAAATGGTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp CTCATAGATGGCCCCTCCATCCAGGGTGATGGCATCTaGTTTTTGTTCCTTGATGAGCTGGACACAGTGGTC +
Preference number: 6 (lower is better)
Translates to: LIDGPSIQGDGI*FLFLDELDTVV
Trigger: GACCACTGTGTCCAGCTCATCAAGGAACAAAAAGCAGATGCCATCACCCTGGATGGAGGGGCCATCTATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TCATGTCTTTGCACTTCTGCTGCTCTGCGTCTGAGATaGTACACCACTGCACCTCCATCACACAGACGACAG +
Preference number: 6 (lower is better)
Translates to: SCLCTSAALRLR*YTTAPPSHRRQ
Trigger: CTGTCGTCTGTGTGATGGAGGTGCAGTGGTGTACCATCTCAGACGCAGAGCAGCAGAAGTGCAAAGACATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp GTCCAGAAGTCCATACACAGTGAAGATGTTGGTGTCTaGACGGACCATGACAGCGTGGGATGGCATTTGTGC +
Preference number: 6 (lower is better)
Translates to: VQKSIHSEDVGV*TDHDSVGWHLC
Trigger: GCACAAATGCCATCCCACGCTGTCATGGTCCGTCCAGACACCAACATCTTCACTGTGTATGGACTTCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp CTGCATAGTAGCTGGAAGTCCTCTGACATCAGGGACTaGCCCCAGGAAGGCAGGGTGTTTCCATCAGTATTT +
Preference number: 6 (lower is better)
Translates to: LHSSWKSSDIRD*PQEGRVFPSVF
Trigger: AAATACTGATGGAAACACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp CTGCTGTCTTCATGGCTGAACAGAAGCTGGCCTTCGTaGAGCAGTTGGAATATGAGACCGCCATCCATGTCA +
Preference number: 6 (lower is better)
Translates to: LLSSWLNRSWPS*SSWNMRPPSMS
Trigger: TGACATGGATGGCGGTCTCATATTCCAACTGCTCAACGAAGGCCAGCTTCTGTTCAGCCATGAAGACAGCAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS GCA 72 bp TGCATAGTAGCTGGAAGTCCTCTGACATCAGGGACTTaGCCCAGGAAGGCAGGGTGTTTCCATCAGTATTTT +
Preference number: 6 (lower is better)
Translates to: CIVAGSPLTSGT*PRKAGCFHQYF
Trigger: AAAATACTGATGGAAACACCCTGCCTTCCTGGGGCAAGTCCCTGATGTCAGAGGACTTCCAGCTACTATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp CCGGACTGGCACCGCTCGGACTGTAGCATCTTTGAAAAGCAGGTCTaGGCTGTGATATTTGGAGGAGTCAAACATTTGGAAACCGTTCTT +
Preference number: 6 (lower is better)
Translates to: PDWHRSDCSIFEKQV*AVIFGGVKHLETVL
Trigger: AAGAACGGTTTCCAAATGTTTGACTCCTCCAAATATCACAGCCAAGACCTGCTTTTCAAAGATGCTACAGTCCGAGCGGTGCCAGTCCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CCA 72 bp TTGGAGGAGTCAAACATTTGGAAACCGTTCTTGTTATaGTCGTCTCCAAACAGGTCCTGGGCCTTGTCCAGA +
Preference number: 6 (lower is better)
Translates to: LEESNIWKPFLL*SSPNRSWALSR
Trigger: TCTGGACAAGGCCCAGGACCTGTTTGGAGACGACCATAACAAGAACGGTTTCCAAATGTTTGACTCCTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 90 bp TTTGAAAAGCAGGTCTTGGCTGTGATATTTGGAGGAGTCAAACATTaGGAAACCGTTCTTGTTATGGTCGTCTCCAAACAGGTCCTGGGC +
Preference number: 6 (lower is better)
Translates to: FEKQVLAVIFGGVKH*ETVLVMVVSKQVLG
Trigger: GCCCAGGACCTGTTTGGAGACGACCATAACAAGAACGGTTTCCAAATGTTTGACTCCTCCAAATATCACAGCCAAGACCTGCTTTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp CACCGCTCGGACTGTAGCATCTTTGAAAAGCAGGTCTaGGCTGTGATATTTGGAGGAGTCAAACATTTGGAA +
Preference number: 6 (lower is better)
Translates to: HRSDCSIFEKQV*AVIFGGVKHLE
Trigger: TTCCAAATGTTTGACTCCTCCAAATATCACAGCCAAGACCTGCTTTTCAAAGATGCTACAGTCCGAGCGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6
CDS CAA 72 bp CAGGTCTTGGCTGTGATATTTGGAGGAGTCAAACATTaGGAAACCGTTCTTGTTATGGTCGTCTCCAAACAG +
Preference number: 6 (lower is better)
Translates to: QVLAVIFGGVKH*ETVLVMVVSKQ
Trigger: CTGTTTGGAGACGACCATAACAAGAACGGTTTCCAAATGTTTGACTCCTCCAAATATCACAGCCAAGACCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023464.6