Pregenerated sensors for MEIKIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020332Ensembl transcript IDs: ENSMUST00000094193.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGAGTCTGCTCAATTCCTTCTTCTCAGTAATTTTCCGCAATCCCTaGTCTTTGCCCTTTCCCTTCAGACCTGGCAGGGCCTCTGTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: VSLLNSFFSVIFRNP*SLPFPFRPGRASVL Trigger: GAGGACAGAGGCCCTGCCAGGTCTGAAGGGAAAGGGCAAAGAGCAGGGATTGCGGAAAATTACTGAGAAGAAGGAATTGAGCAGACTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CCA 90 bp | TGCTCTCTGTATGTAACTCTGCATTTGAACAACTCGGGAGACAGCTaGAAAAGTCATCCTGCTCGGCTGGTCCTGAAACTAGCTCAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: CSLYVTLHLNNSGDS*KSHPARLVLKLAQY Trigger: GTACTGAGCTAGTTTCAGGACCAGCCGAGCAGGATGACTTTTCCAGCTGTCTCCCGAGTTGTTCAAATGCAGAGTTACATACAGAGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS TCA 72 bp | GCACAGGTTCCAGGGGCTGAGGCAGCAGAGTATACCTaGCTGCAGTGCTTTCAAGAGCTGAACTTAGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: AQVPGAEAAEYT*LQCFQELNLEG Trigger: CCCCTCTAAGTTCAGCTCTTGAAAGCACTGCAGTCAGGTATACTCTGCTGCCTCAGCCCCTGGAACCTGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | CTGCTCAATTCCTTCTTCTCAGTAATTTTCCGCAATCCCTGCTCTTaGCCCTTTCCCTTCAGACCTGGCAGGGCCTCTGTCCTCCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: LLNSFFSVIFRNPCS*PFPFRPGRASVLPG Trigger: CCCTGGGAGGACAGAGGCCCTGCCAGGTCTGAAGGGAAAGGGCAAAGAGCAGGGATTGCGGAAAATTACTGAGAAGAAGGAATTGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 72 bp | TCCTTCTTCTCAGTAATTTTCCGCAATCCCTGCTCTTaGCCCTTTCCCTTCAGACCTGGCAGGGCCTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SFFSVIFRNPCS*PFPFRPGRASV Trigger: GACAGAGGCCCTGCCAGGTCTGAAGGGAAAGGGCAAAGAGCAGGGATTGCGGAAAATTACTGAGAAGAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS GCA 72 bp | CTCAATTCCTTCTTCTCAGTAATTTTCCGCAATCCCTaGTCTTTGCCCTTTCCCTTCAGACCTGGCAGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: LNSFFSVIFRNP*SLPFPFRPGRA Trigger: GGCCCTGCCAGGTCTGAAGGGAAAGGGCAAAGAGCAGGGATTGCGGAAAATTACTGAGAAGAAGGAATTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | AGCTACTTCCTCTCTCATCGGTGCTCTCTGTATGTAACTCTGCATTaGAACAACTCGGGAGACAGCTGGAAAAGTCATCCTGCTCGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SYFLSHRCSLYVTLH*NNSGDSWKSHPARL Trigger: CAGCCGAGCAGGATGACTTTTCCAGCTGTCTCCCGAGTTGTTCAAATGCAGAGTTACATACAGAGAGCACCGATGAGAGAGGAAGTAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS GCA 72 bp | GTTCTGGCGATGGGAAGCTACTTCCTCTCTCATCGGTaGTCTCTGTATGTAACTCTGCATTTGAACAACTCG | + |
|
Preference number: 6 (lower is better) Translates to: VLAMGSYFLSHR*SLYVTLHLNNS Trigger: CGAGTTGTTCAAATGCAGAGTTACATACAGAGAGCACCGATGAGAGAGGAAGTAGCTTCCCATCGCCAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CCA 72 bp | TATGTAACTCTGCATTTGAACAACTCGGGAGACAGCTaGAAAAGTCATCCTGCTCGGCTGGTCCTGAAACTA | + |
|
Preference number: 6 (lower is better) Translates to: YVTLHLNNSGDS*KSHPARLVLKL Trigger: TAGTTTCAGGACCAGCCGAGCAGGATGACTTTTCCAGCTGTCTCCCGAGTTGTTCAAATGCAGAGTTACATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CCA 72 bp | AGAGGAACTCAGAACTGCAGAGAGGTTTGCAAACTGTaGCGCTTTCTCTATAACTACTGCTTTACTGGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: RGTQNCREVCKL*RFLYNYCFTGV Trigger: GACACCAGTAAAGCAGTAGTTATAGAGAAAGCGCCACAGTTTGCAAACCTCTCTGCAGTTCTGAGTTCCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | CTGCTAATGTCATCCCTATTTTTCTATGGCGTTTCTCATAGTTTTTaGAAGAGGAACTCAGAACTGCAGAGAGGTTTGCAAACTGTGGCG | + |
|
Preference number: 6 (lower is better) Translates to: LLMSSLFFYGVSHSF*KRNSELQRGLQTVA Trigger: CGCCACAGTTTGCAAACCTCTCTGCAGTTCTGAGTTCCTCTTCAAAAAACTATGAGAAACGCCATAGAAAAATAGGGATGACATTAGCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 72 bp | CAATCACAAACTCAGCTATGTCTGAAGATGGGGTACTaGTTAGCAGGGCTTTGCTTTGTTTATCAGGAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: QSQTQLCLKMGY*LAGLCFVYQEE Trigger: TTCTTCCTGATAAACAAAGCAAAGCCCTGCTAACAAGTACCCCATCTTCAGACATAGCTGAGTTTGTGATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | GAGACAAATCAATCACAAACTCAGCTATGTCTGAAGATGGGGTACTaGTTAGCAGGGCTTTGCTTTGTTTATCAGGAAGAATACAACCTT | + |
|
Preference number: 6 (lower is better) Translates to: ETNQSQTQLCLKMGY*LAGLCFVYQEEYNL Trigger: AAGGTTGTATTCTTCCTGATAAACAAAGCAAAGCCCTGCTAACAAGTACCCCATCTTCAGACATAGCTGAGTTTGTGATTGATTTGTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 72 bp | CCTCAGAAGCTGCATTATCTACAACTGATGCTAAATTaGAAGCATACTTTGGTTCTGGAGAAAGATGTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: PQKLHYLQLMLN*KHTLVLEKDVG Trigger: CCCAACATCTTTCTCCAGAACCAAAGTATGCTTCAAATTTAGCATCAGTTGTAGATAATGCAGCTTCTGAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | CAGAAGCTGCATTATCTACAACTGATGCTAAATTTGAAGCATACTTaGGTTCTGGAGAAAGATGTTGGGCTGCTAATGTCATCCCTATTT | + |
|
Preference number: 6 (lower is better) Translates to: QKLHYLQLMLNLKHT*VLEKDVGLLMSSLF Trigger: AAATAGGGATGACATTAGCAGCCCAACATCTTTCTCCAGAACCAAAGTATGCTTCAAATTTAGCATCAGTTGTAGATAATGCAGCTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||
| CDS CAA 90 bp | CAAATACAACCTCAGAAGCTGCATTATCTACAACTGATGCTAAATTaGAAGCATACTTTGGTTCTGGAGAAAGATGTTGGGCTGCTAATG | + |
|
Preference number: 6 (lower is better) Translates to: QIQPQKLHYLQLMLN*KHTLVLEKDVGLLM Trigger: CATTAGCAGCCCAACATCTTTCTCCAGAACCAAAGTATGCTTCAAATTTAGCATCAGTTGTAGATAATGCAGCTTCTGAGGTTGTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094193.3 |
||