Pregenerated sensors for MEDAG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029659Ensembl transcript IDs: ENSMUST00000093110.12, ENSMUST00000201083.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGTGTACCTGTAGGGAGGAGGACCCTCCCTTGTCACTGGTTGATTaGCACCCCACCTGGCTTTACATTTCAGGGAGGGCTCATCCTGGT | + |
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Preference number: 1 (lower is better) Translates to: RCTCREEDPPLSLVD*HPTWLYISGRAHPG Trigger: ACCAGGATGAGCCCTCCCTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTCCTCCTCCCTACAGGTACACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 90 bp | AACTACTACGGTGTACCTGTAGGGAGGAGGACCCTCCCTTGTCACTaGTTGATTGGCACCCCACCTGGCTTTACATTTCAGGGAGGGCTC | + |
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Preference number: 1 (lower is better) Translates to: NYYGVPVGRRTLPCH*LIGTPPGFTFQGGL Trigger: GAGCCCTCCCTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTCCTCCTCCCTACAGGTACACCGTAGTAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 90 bp | CATTCTGTGATCCAGGATACATCACAGGTTAGCATCCCAGTCAGATaGCTCCCACAGAGGTTGCCAGGAGGGTCTTCAGAGTGCCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: HSVIQDTSQVSIPVR*LPQRLPGGSSECQG Trigger: ACCCTGGCACTCTGAAGACCCTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTATCCTGGATCACAGAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTaGCAGGAGGGTCTTCAGAGTGCCAGGGTACTAAGCAAAGTTCAT | + |
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Preference number: 1 (lower is better) Translates to: IHHRLASQSDASHRG*QEGLQSARVLSKVH Trigger: ATGAACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 90 bp | CAGGAGGGTCTTCAGAGTGCCAGGGTACTAAGCAAAGTTCATGGGTaGTTGGTTACCCCTGAAAATTCCTCAGAGAAGTGTTCAATGTCA | + |
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Preference number: 1 (lower is better) Translates to: QEGLQSARVLSKVHG*LVTPENSSEKCSMS Trigger: TGACATTGAACACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 90 bp | GAGTGCCAGGGTACTAAGCAAAGTTCATGGGTGCTTGGTTACCCCTaGAAATTCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGC | + |
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Preference number: 1 (lower is better) Translates to: ECQGTKQSSWVLGYP*KFLREVFNVNDTLC Trigger: GCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 90 bp | CTGCAGAGATCCTTCAGCAGCCAGTATCTTGAATGTTCATTCCAGTaGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATATCAGTAC | + |
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Preference number: 1 (lower is better) Translates to: LQRSFSSQYLECSFQ*QVGHQICFPGKYQY Trigger: GTACTGATATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAACATTCAAGATACTGGCTGCTGAAGGATCTCTGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 90 bp | TGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATATCAGTACTaGCTTTACCTGACATATTTGCAAGAGAAGAGTTTAGCCCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: WQVGHQICFPGKYQY*LYLTYLQEKSLAPR Trigger: CCTTGGGGCTAAACTCTTCTCTTGCAAATATGTCAGGTAAAGCCAGTACTGATATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 90 bp | ATTGGACTCAGGACCTCTGGAAGAGCAGTCAATGCTAATAACTGCTaGGCCATCTCTCCAGCCCAACTAAGACATCTTAATGATGAAATT | + |
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Preference number: 1 (lower is better) Translates to: IGLRTSGRAVNANNC*AISPAQLRHLNDEI Trigger: AATTTCATCATTAAGATGTCTTAGTTGGGCTGGAGAGATGGCTCAGCAGTTATTAGCATTGACTGCTCTTCCAGAGGTCCTGAGTCCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 90 bp | TTTAATTGTGCATATGTACTAGGTAGCATCTCAGATACAAATGGCTaGCCATCAACCTTGCTATCAAAATATGTAGTGTGGGAATATGTT | + |
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Preference number: 1 (lower is better) Translates to: FNCAYVLGSISDTNG*PSTLLSKYVVWEYV Trigger: AACATATTCCCACACTACATATTTTGATAGCAAGGTTGATGGCCAGCCATTTGTATCTGAGATGCTACCTAGTACATATGCACAATTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CAA 90 bp | TACTACGGTGTACCTGTAGGGAGGAGGACCCTCCCTTGTCACTGGTaGATTGGCACCCCACCTGGCTTTACATTTCAGGGAGGGCTCATC | + |
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Preference number: 2 (lower is better) Translates to: YYGVPVGRRTLPCHW*IGTPPGFTFQGGLI Trigger: GATGAGCCCTCCCTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTCCTCCTCCCTACAGGTACACCGTAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTACCTGACATATTTGCAAGAGAAGAGTTTAGCCCCAAGGCTTGCTGGGGCTCACTGGGCCTGCCAGTaGCTAGGGATGGGAAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LYLTYLQEKSLAPRLAGAHWACQ*LGMGKG Trigger: CCCCTTTCCCATCCCTAGGCACTGGCAGGCCCAGTG...AGCCCCAGCAAGCCTTGGGGCTAAACTCTTCTCTTGCAAATATGTCAGGTAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CAA 90 bp | AAACACCAACTACTACGGTGTACCTGTAGGGAGGAGGACCCTCCCTaGTCACTGGTTGATTGGCACCCCACCTGGCTTTACATTTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: KHQLLRCTCREEDPP*SLVDWHPTWLYISG Trigger: CCCTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTCCTCCTCCCTACAGGTACACCGTAGTAGTTGGTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CAA 90 bp | GATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTaGCCAGGAGGGTCTTCAGAGTGCCAGGGTACTAAGCAAAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: DTSQVSIPVRCLPQR*PGGSSECQGTKQSS Trigger: TGAACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR TCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGGTGCTTGGTTACCCCTaGAAATTCCTCAGAGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: IHHRLASQSDASHRGCQEVLGYP*KFLREV Trigger: CACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCAC...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAATGTTCATTCCAGTGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATGCTGGGGCTGCTGGCTaGAGAGGGCCATTCTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: LNVHSSGRLDIRFVSQGNAGAAG*RGPFCD Trigger: ATCACAGAATGGCCCTCTGCAGCCAGCAGCCCCAGC...ATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAACATTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAATGTTCATTCCAGTGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATTTTAGCCCCAAGGCTTaGTGGGGCTGCTGGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LNVHSSGRLDIRFVSQGNFSPKA*WGCWLQ Trigger: CTGCAGCCAGCAGCCCCAGCAAGCCTTGGGGCTAAA...ATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAACATTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGGTCAATGACACCCTATaGCACAGAGACAAAATCCTT | + |
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Preference number: 2 (lower is better) Translates to: IHHRLASQSDASHRGCQEVNDTL*HRDKIL Trigger: AAGGATTTTGTCTCTGTGGCATAGGGTGTCATTGAC...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTACCTGACATATTTGCAAGAGAAGAGTTTAGCCCCAAGGCTTGCTGGGGCTGGAGGGTCTTCAGAGTaGCAGGGTACTAAGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: LYLTYLQEKSLAPRLAGAGGSSE*QGTKQS Trigger: ACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCC...AGCCCCAGCAAGCCTTGGGGCTAAACTCTTCTCTTGCAAATATGTCAGGTAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CAA 90 bp | GAGGGTCTTCAGAGTGCCAGGGTACTAAGCAAAGTTCATGGGTGCTaGGTTACCCCTGAAAATTCCTCAGAGAAGTGTTCAATGTCAATG | + |
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Preference number: 2 (lower is better) Translates to: EGLQSARVLSKVHGC*VTPENSSEKCSMSM Trigger: CATTGACATTGAACACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTGGAGGGTCTTCAGAGTaGCAGGGTACTAAGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: FLLCTQGLFLLIGEPVRIGGSSE*QGTKQS Trigger: ACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCC...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTAGTGTTCAATGTCAATaGCACCCTATGCCACAGAGA | + |
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Preference number: 2 (lower is better) Translates to: FLLCTQGLFLLIGEPVRISVQCQ*HPMPQR Trigger: TCTCTGTGGCATAGGGTGTCATTGACATTGAACACT...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTCATCTCAGATACAAATaGCTGGCCATCAACCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: FLLCTQGLFLLIGEPVRIHLRYK*LAINLA Trigger: AGCAAGGTTGATGGCCAGCCATTTGTATCTGAGATG...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTGGGAAATATCAGTACTaGCTTTACCTGACATATTTG | + |
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Preference number: 2 (lower is better) Translates to: FLLCTQGLFLLIGEPVRIGKYQY*LYLTYL Trigger: CAAATATGTCAGGTAAAGCCAGTACTGATATTTCCC...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | GACCCTCCCTTGTCACTGGTTGATTGGCACCCCACCTaGCTTTACATTTCAGGGAGGGCTCATCCTGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: DPPLSLVDWHPT*LYISGRAHPGG Trigger: GCCACCAGGATGAGCCCTCCCTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 72 bp | GCTTGCTGGGGCTGCTGGCTGCAGAGGGCCATTCTGTaGTCCAGGATACATCACAGGTTAGCATCCCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: ACWGCWLQRAIL*SRIHHRLASQS Trigger: TGACTGGGATGCTAACCTGTGATGTATCCTGGATCACAGAATGGCCCTCTGCAGCCAGCAGCCCCAGCAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | CTTCCATCCCATAATCATAACCTTGACGGAAGCCACTaGGCCTGCCAGTGCCTAGGGATGGGAAAGGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: LPSHNHNLDGSH*ACQCLGMGKGV Trigger: GACCCCCTTTCCCATCCCTAGGCACTGGCAGGCCCAGTGGCTTCCGTCAAGGTTATGATTATGGGATGGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 72 bp | TCCCATAATCATAACCTTGACGGAAGCCACTGGGCCTaGCAGTGCCTAGGGATGGGAAAGGGGGTCCTCTAT | + |
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Preference number: 3 (lower is better) Translates to: SHNHNLDGSHWA*QCLGMGKGVLY Trigger: ATAGAGGACCCCCTTTCCCATCCCTAGGCACTGGCAGGCCCAGTGGCTTCCGTCAAGGTTATGATTATGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 72 bp | TGCCTCCCACAGAGGTTGCCAGGAGGGTCTTCAGAGTaGCAGGGTACTAAGCAAAGTTCATGGGTGCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: CLPQRLPGGSSE*QGTKQSSWVLG Trigger: ACCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTCTGAAGACCCTCCTGGCAACCTCTGTGGGAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 72 bp | AAGAGTTTAGCCCCAAGGCTTGCTGGGGCTGCTGGCTaGAGAGGGCCATTCTGTGATCCAGGATACATCACA | + |
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Preference number: 3 (lower is better) Translates to: KSLAPRLAGAAG*RGPFCDPGYIT Trigger: TGTGATGTATCCTGGATCACAGAATGGCCCTCTGCAGCCAGCAGCCCCAGCAAGCCTTGGGGCTAAACTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | AGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTaGCAAAGGGATAGAAATGTCCACTCCCTGCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: RGSSIEPWRARG*QRDRNVHSLPS Trigger: AGAAGGCAGGGAGTGGACATTTCTATCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | GGTGTACCTGTAGGGAGGAGGACCCTCCCTTGTCACTaGTTGATTGGCACCCCACCTGGCTTTACATTTCAG | + |
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Preference number: 3 (lower is better) Translates to: GVPVGRRTLPCH*LIGTPPGFTFQ Trigger: CTGAAATGTAAAGCCAGGTGGGGTGCCAATCAACCAGTGACAAGGGAGGGTCCTCCTCCCTACAGGTACACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 72 bp | GTGAATCCCACTGGAGCTGTGGGGCAGAAAGCGCCCTaGTGTCCAGTGTACCATGGTAATGGCTTAGTTTCC | + |
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Preference number: 3 (lower is better) Translates to: VNPTGAVGQKAP*CPVYHGNGLVS Trigger: GGAAACTAAGCCATTACCATGGTACACTGGACATCAGGGCGCTTTCTGCCCCACAGCTCCAGTGGGATTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 72 bp | ATCCAGGATACATCACAGGTTAGCATCCCAGTCAGATaGCTCCCACAGAGGTTGCCAGGAGGGTCTTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: IQDTSQVSIPVR*LPQRLPGGSSE Trigger: CTCTGAAGACCCTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTATCCTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR GCA 72 bp | GGCTTTACATTTCAGGGAGGGCTCATCCTGGTGGCCTaGAGAGATCCTTCAGCAGCCAGTATCTTGAATGTT | + |
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Preference number: 3 (lower is better) Translates to: GFTFQGGLILVA*RDPSAASILNV Trigger: AACATTCAAGATACTGGCTGCTGAAGGATCTCTGCAGGCCACCAGGATGAGCCCTCCCTGAAATGTAAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR-3UTR CAA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGAAAGTTCATGGGTGCTaGGTTACCCCTGAAAATTCC | + |
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Preference number: 3 (lower is better) Translates to: IHHRLASQSDASHRGCQEKVHGC*VTPENS Trigger: GGAATTTTCAGGGGTAACCAAGCACCCATGAACTTT...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 72 bp | TGGTGGCCTGCAGAGATCCTTCAGCAGCCAGTATCTTaGATGTTCATTCCAGTGGCAGGTTGGACATCAGAT | + |
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Preference number: 3 (lower is better) Translates to: WWPAEILQQPVS*MFIPVAGWTSD Trigger: ATCTGATGTCCAACCTGCCACTGGAATGAACATTCAAGATACTGGCTGCTGAAGGATCTCTGCAGGCCACCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 72 bp | AGGACCTCTGGAAGAGCAGTCAATGCTAATAACTGCTaGGCCATCTCTCCAGCCCAACTAAGACATCTTAAT | + |
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Preference number: 3 (lower is better) Translates to: RTSGRAVNANNC*AISPAQLRHLN Trigger: ATTAAGATGTCTTAGTTGGGCTGGAGAGATGGCTCAGCAGTTATTAGCATTGACTGCTCTTCCAGAGGTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | TCCTTCAGCAGCCAGTATCTTGAATGTTCATTCCAGTaGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: SFSSQYLECSFQ*QVGHQICFPGK Trigger: TTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAACATTCAAGATACTGGCTGCTGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR TCA 72 bp | GGTACTAAGCAAAGTTCATGGGTGCTTGGTTACCCCTaGAAATTCCTCAGAGAAGTGTTCAATGTCAATGAC | + |
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Preference number: 3 (lower is better) Translates to: GTKQSSWVLGYP*KFLREVFNVND Trigger: GTCATTGACATTGAACACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCACCCATGAACTTTGCTTAGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | GCATATGTACTAGGTAGCATCTCAGATACAAATGGCTaGCCATCAACCTTGCTATCAAAATATGTAGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: AYVLGSISDTNG*PSTLLSKYVVW Trigger: CCACACTACATATTTTGATAGCAAGGTTGATGGCCAGCCATTTGTATCTGAGATGCTACCTAGTACATATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| 3UTR CCA 72 bp | GGACATCAGATTTGTTTCCCAGGGAAATATCAGTACTaGCTTTACCTGACATATTTGCAAGAGAAGAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: GHQICFPGKYQY*LYLTYLQEKSL Trigger: TAAACTCTTCTCTTGCAAATATGTCAGGTAAAGCCAGTACTGATATTTCCCTGGGAAACAAATCTGATGTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| CDS-3UTR TCA 90 bp | AAATTCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGCCACAGAGACAAACGTCCCCGAAGACGTTaGAGCCCCCACGTGCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KFLREVFNVNDTLCHRDKRPRRR*SPHVRP Trigger: CGGCCGCACGTGGGGGCTTCAACGTCTTCGGGGACG...TTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGAATTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
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| CDS-3UTR TCA 90 bp | GGAAGCCACTGGGCCTGCCAGTGCCTAGGGATGGGAAAGGGGGTCCTCTATAGAGTGACAGATTGCAGTTaGAAACGTCATCTATTGAAC | + |
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Preference number: 4 (lower is better) Translates to: GSHWACQCLGMGKGVLYRVTDCS*KRHLLN Trigger: GTTCAATAGATGACGTTTTCAACTGCAATCTGTCAC...TCTATAGAGGACCCCCTTTCCCATCCCTAGGCACTGGCAGGCCCAGTGGCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
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| CDS-3UTR CCA 90 bp | TGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCTTCCATCCCATAAGGTCAGGCTGGGTCTaGCCACAGGCTCGCACGCTG | + |
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Preference number: 4 (lower is better) Translates to: CSMSMTPYATETKSFHPIRSGWV*PQARTL Trigger: CAGCGTGCGAGCCTGTGGCCAGACCCAGCCTGACCT...TATGGGATGGAAGGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
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| CDS-3UTR CCA 90 bp | ATGGGAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGACAGCACAATCGTTCCTaGAGGGAAGAAATTCTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: MGKGVLYRTLEGQRLAKGQHNRS*REEILH Trigger: GTGAAGAATTTCTTCCCTCCAGGAACGATTGTGCTG...TCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTCCCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR TCA 90 bp | AAATTCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAGCGCAGCTCCCCGGATaGAATGGAGGTCAGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KFLREVFNVNDTLCHRDKAQLPG*NGGQAG Trigger: CCCAGCCTGACCTCCATTTCATCCGGGGAGCTGCGC...TTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| CDS-3UTR GCA 90 bp | TTCATTCCAGTGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATATCAGTACGCACGTCCACAGACTaGGCAGCTCCCCGGATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FIPVAGWTSDLFPREISVRTSTD*AAPRMK Trigger: TTTCATCCGGGGAGCTGCGCAGTCTGTGGACGTGCG...TACTGATATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| CDS-3UTR GCA 90 bp | GAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGATAGAACCATGTCCATCCCTTaGTCTATCTGTCTTCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: ERGSSIEPWRARGWQRDRTMSIP*SICLLI Trigger: GATAAGAAGACAGATAGAGCAAGGGATGGACATGGT...TCTATCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR GCA 90 bp | GCTGCAGAGGGCCATTCTGTGATCCAGGATACATCACAGGTTAGCATCCCAGTCCTTCTTATCTTGGGGTaGCTTGTGTTCACAAGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: AAEGHSVIQDTSQVSIPVLLILG*LVFTRN Trigger: GTTTCTTGTGAACACAAGGCACCCCAAGATAAGAAG...GACTGGGATGCTAACCTGTGATGTATCCTGGATCACAGAATGGCCCTCTGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR GCA 90 bp | GCTGCAGAGGGCCATTCTGTGATCCAGGATACATCACAGGTTAGCATCCCAGTCACCATGTCCATCCCTTaGTCTATCTGTCTTCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: AAEGHSVIQDTSQVSIPVTMSIP*SICLLI Trigger: GATAAGAAGACAGATAGAGCAAGGGATGGACATGGT...GACTGGGATGCTAACCTGTGATGTATCCTGGATCACAGAATGGCCCTCTGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGTCTGTCTTCTTATCTTaGGGTGCCTTGTGTTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: IHHRLASQSDASHRGCQESVFLS*GALCSQ Trigger: TTGTGAACACAAGGCACCCCAAGATAAGAAGACAGA...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR TCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGATAGGTCCTTTCTTTTaGAATGTCCTTCTTGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: IHHRLASQSDASHRGCQEIGPFF*NVLLGL Trigger: CAGACCAAGAAGGACATTTCAAAAGAAAGGACCTAT...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CCA 90 bp | ATGGGAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGATATAATCACAGTAGTTaGTCAGTTCCACATATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: MGKGVLYRTLEGQRLAKGYNHSS*SVPHIS Trigger: AGAGATATGTGGAACTGACCAACTACTGTGATTATA...TCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTCCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| 3UTR CAA 72 bp | CAGAGTGCCAGGGTACTAAGCAAAGTTCATGGGTGCTaGGTTACCCCTGAAAATTCCTCAGAGAAGTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QSARVLSKVHGC*VTPENSSEKCS Trigger: TGAACACTTCTCTGAGGAATTTTCAGGGGTAACCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR TCA 90 bp | TCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCCAATCACTGAGGAAATaGCCATGTCCATCCCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SSEKCSMSMTPYATETKSQSLRK*PCPSLA Trigger: AGCAAGGGATGGACATGGTCATTTCCTCAGTGATTG...GGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CCA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGTGTTTCTTTCTTTTCTaGGTTCGTACTTGTCAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: IHHRLASQSDASHRGCQECFFLF*VRTCQV Trigger: AACTTGACAAGTACGAACCCAGAAAAGAAAGAAACA...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR GCA 90 bp | TCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCCTTCTTATCTTGGGGTaGCTTGTGTTCACAAGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SSEKCSMSMTPYATETKSLLILG*LVFTRN Trigger: GTTTCTTGTGAACACAAGGCACCCCAAGATAAGAAG...GGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR TCA 90 bp | TGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCTTCCATCCCATAGTGACAGATTGCAGTTaGAAACGTCATCTATTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: CSMSMTPYATETKSFHPIVTDCS*KRHLLN Trigger: GTTCAATAGATGACGTTTTCAACTGCAATCTGTCAC...TATGGGATGGAAGGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTTCTGTCTTCTTATCTTaGGGTGCCTTGTGTTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: FLLCTQGLFLLIGEPVRISVFLS*GALCSQ Trigger: TTGTGAACACAAGGCACCCCAAGATAAGAAGACAGA...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR TCA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTATAGGTCCTTTCTTTTaGAATGTCCTTCTTGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: FLLCTQGLFLLIGEPVRIIGPFF*NVLLGL Trigger: CAGACCAAGAAGGACATTTCAAAAGAAAGGACCTAT...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CCA 90 bp | TCCTCAGAGAAGTGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCTGTTTCTTTCTTTTCTaGGTTCGTACTTGTCAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SSEKCSMSMTPYATETKSCFFLF*VRTCQV Trigger: AACTTGACAAGTACGAACCCAGAAAAGAAAGAAACA...GGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACACTTCTCTGAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CCA 90 bp | GCTCGCAGTCGCACGTCCACAGACTGCGCAGCTCCCCGGATGAAATaGAGGTCAGGCTGGGTCTGGCCACAGGCTCGCACGCTGCAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: ARSRTSTDCAAPRMK*RSGWVWPQARTLQW Trigger: CCACTGCAGCGTGCGAGCCTGTGGCCAGACCCAGCCTGACCTCCATTTCATCCGGGGAGCTGCGCAGTCTGTGGACGTGCGACTGCGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| CDS-3UTR CAA 90 bp | ATGGGAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGATTATCTTGGGGTGCCTaGTGTTCACAAGAAACGCAT | + |
|
Preference number: 5 (lower is better) Translates to: MGKGVLYRTLEGQRLAKGLSWGA*CSQETH Trigger: ATGCGTTTCTTGTGAACACAAGGCACCCCAAGATAA...TCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTCCCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | GGAAGCCACTGGGCCTGCCAGTGCCTAGGGATGGGAAAGGGGGTCCTCTATAGAGGTGACAGATTGCAGTaGAAAACGTCATCTATTGAA | + |
|
Preference number: 5 (lower is better) Translates to: GSHWACQCLGMGKGVLYRGDRLQ*KTSSIE Trigger: TTCAATAGATGACGTTTTCAACTGCAATCTGTCACC...TCTATAGAGGACCCCCTTTCCCATCCCTAGGCACTGGCAGGCCCAGTGGCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | GAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGATAGAGACCATGTCCATCCCTaGCTCTATCTGTCTTCTTAT | + |
|
Preference number: 5 (lower is better) Translates to: ERGSSIEPWRARGWQRDRDHVHP*LYLSSY Trigger: ATAAGAAGACAGATAGAGCAAGGGATGGACATGGTC...TCTATCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGATCTGTCTTCTTATCTaGGGGTGCCTTGTGTTCACA | + |
|
Preference number: 5 (lower is better) Translates to: IHHRLASQSDASHRGCQEICLLI*GCLVFT Trigger: TGTGAACACAAGGCACCCCAAGATAAGAAGACAGAT...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | ATGGGAAAGGGGGTCCTCTATAGAACCTTGGAGGGCCAGAGGCTGGCAAAGGGAGGTGACAGATTGCAGTaGAAAACGTCATCTATTGAA | + |
|
Preference number: 5 (lower is better) Translates to: MGKGVLYRTLEGQRLAKGGDRLQ*KTSSIE Trigger: TTCAATAGATGACGTTTTCAACTGCAATCTGTCACC...TCCCTTTGCCAGCCTCTGGCCCTCCAAGGTTCTATAGAGGACCCCCTTTCCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | GCTGCAGAGGGCCATTCTGTGATCCAGGATACATCACAGGTTAGCATCCCAGTCGATCTGGGTGACAGATaGCAGTTGAAAACGTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: AAEGHSVIQDTSQVSIPVDLGDR*QLKTSS Trigger: AGATGACGTTTTCAACTGCAATCTGTCACCCAGATC...GACTGGGATGCTAACCTGTGATGTATCCTGGATCACAGAATGGCCCTCTGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | ATACATCACAGGTTAGCATCCCAGTCAGATGCCTCCCACAGAGGTTGCCAGGAGTTTGAAATGTCCTTCTaGGTCTGCACGTTAATAAAG | + |
|
Preference number: 5 (lower is better) Translates to: IHHRLASQSDASHRGCQEFEMSF*VCTLIK Trigger: CTTTATTAACGTGCAGACCAAGAAGGACATTTCAAA...CTCCTGGCAACCTCTGTGGGAGGCATCTGACTGGGATGCTAACCTGTGATGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TGCCACAGAGACAAAATCCTTCCATCCCATAATCATAACCTTGACGGAAGCCACCACATTCCAGAAGACTaGGAAATGAGAATTCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: CHRDKILPSHNHNLDGSHHIPED*EMRILP Trigger: TGGCAGAATTCTCATTTCCAAGTCTTCTGGAATGTG...GTGGCTTCCGTCAAGGTTATGATTATGGGATGGAAGGATTTTGTCTCTGTGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCTTCCATCCCATATTATCTTGGGGTGCCTaGTGTTCACAAGAAACGCAT | + |
|
Preference number: 5 (lower is better) Translates to: CSMSMTPYATETKSFHPILSWGA*CSQETH Trigger: ATGCGTTTCTTGTGAACACAAGGCACCCCAAGATAA...TATGGGATGGAAGGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TGTTCAATGTCAATGACACCCTATGCCACAGAGACAAAATCCTTCCATCCCATAGACCATGTCCATCCCTaGCTCTATCTGTCTTCTTAT | + |
|
Preference number: 5 (lower is better) Translates to: CSMSMTPYATETKSFHPIDHVHP*LYLSSY Trigger: ATAAGAAGACAGATAGAGCAAGGGATGGACATGGTC...TATGGGATGGAAGGATTTTGTCTCTGTGGCATAGGGTGTCATTGACATTGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TTCATTCCAGTGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATATCAGTAGATCTGGGTGACAGATaGCAGTTGAAAACGTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: FIPVAGWTSDLFPREISVDLGDR*QLKTSS Trigger: AGATGACGTTTTCAACTGCAATCTGTCACCCAGATC...TACTGATATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TTCTTGCTGTGTACCCAAGGTTTATTTCTGCTGATTGGAGAACCGGTTAGAATTCACATTCCAGAAGACTaGGAAATGAGAATTCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: FLLCTQGLFLLIGEPVRIHIPED*EMRILP Trigger: TGGCAGAATTCTCATTTCCAAGTCTTCTGGAATGTG...AATTCTAACCGGTTCTCCAATCAGCAGAAATAAACCTTGGGTACACAGCAAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS-3UTR CAA 90 bp | TTCATTCCAGTGGCAGGTTGGACATCAGATTTGTTTCCCAGGGAAATATCAGTATTTGAAATGTCCTTCTaGGTCTGCACGTTAATAAAG | + |
|
Preference number: 5 (lower is better) Translates to: FIPVAGWTSDLFPREISVFEMSF*VCTLIK Trigger: CTTTATTAACGTGCAGACCAAGAAGGACATTTCAAA...TACTGATATTTCCCTGGGAAACAAATCTGATGTCCAACCTGCCACTGGAATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS GCA 72 bp | GCGGCCGCGGGTTCCCCGGGCCCGGGCACCAGGAGCTaGTCACCGCGCAGTTGGAAGGCACCAGGCTGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: AAAGSPGPGTRS*SPRSWKAPGCR Trigger: CCTACAGCCTGGTGCCTTCCAACTGCGCGGTGAGCAGCTCCTGGTGCCCGGGCCCGGGGAACCCGCGGCCGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| CDS GCA 72 bp | GCAGCAGGGCCAGCTCGCAGTCGCACGTCCACAGACTaGGCAGCTCCCCGGATGAAATGGAGGTCAGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: AAGPARSRTSTD*AAPRMKWRSGW Trigger: CCAGCCTGACCTCCATTTCATCCGGGGAGCTGCGCAGTCTGTGGACGTGCGACTGCGAGCTGGCCCTGCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093110.12 |
||
| CDS GCA 72 bp | TCTGGGTTCGTACTTGTCAAGTTCAGAACCTTTCCGTaGACTTTTACGGTGGAATTGCTGAGCCCAAACCAG | + |
|
Preference number: 6 (lower is better) Translates to: SGFVLVKFRTFP*TFTVELLSPNQ Trigger: CTGGTTTGGGCTCAGCAATTCCACCGTAAAAGTGCACGGAAAGGTTCTGAACTTGACAAGTACGAACCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CCA 72 bp | CCATGTCCATCCCTTGCTCTATCTGTCTTCTTATCTTaGGGTGCCTTGTGTTCACAAGAAACGCATAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: PCPSLALSVFLS*GALCSQETHRS Trigger: GGACCTATGCGTTTCTTGTGAACACAAGGCACCCCAAGATAAGAAGACAGATAGAGCAAGGGATGGACATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS TCA 72 bp | TCAGAACCTTTCCGTGCACTTTTACGGTGGAATTGCTaGGCCCAAACCAGTAGAAGAAATCAAACAGGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SEPFRALLRWNC*AQTSRRNQTGH Trigger: ATGCCCTGTTTGATTTCTTCTACTGGTTTGGGCTCAGCAATTCCACCGTAAAAGTGCACGGAAAGGTTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CAA 72 bp | GGTTCTGTAACCGATGATCTGGGTGACAGATTGCAGTaGAAAACGTCATCTATTGAACCTCTAGATGTGACG | + |
|
Preference number: 6 (lower is better) Translates to: GSVTDDLGDRLQ*KTSSIEPLDVT Trigger: CGTCACATCTAGAGGTTCAATAGATGACGTTTTCAACTGCAATCTGTCACCCAGATCATCGGTTACAGAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CAA 90 bp | GCCAAAAGTGGTTCTGTAACCGATGATCTGGGTGACAGATTGCAGTaGAAAACGTCATCTATTGAACCTCTAGATGTGACGCTAAATTTC | + |
|
Preference number: 6 (lower is better) Translates to: AKSGSVTDDLGDRLQ*KTSSIEPLDVTLNF Trigger: GAAATTTAGCGTCACATCTAGAGGTTCAATAGATGACGTTTTCAACTGCAATCTGTCACCCAGATCATCGGTTACAGAACCACTTTTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CAA 90 bp | AATTCTGCCAAAAGTGGTTCTGTAACCGATGATCTGGGTGACAGATaGCAGTTGAAAACGTCATCTATTGAACCTCTAGATGTGACGCTA | + |
|
Preference number: 6 (lower is better) Translates to: NSAKSGSVTDDLGDR*QLKTSSIEPLDVTL Trigger: TAGCGTCACATCTAGAGGTTCAATAGATGACGTTTTCAACTGCAATCTGTCACCCAGATCATCGGTTACAGAACCACTTTTGGCAGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS TCA 72 bp | ACTGAAGTCTATAGCTTTCTCCAATCACTGAGGAAATaGCCATGTCCATCCCTTGCTCTATCTGTCTTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: TEVYSFLQSLRK*PCPSLALSVFL Trigger: TAAGAAGACAGATAGAGCAAGGGATGGACATGGTCATTTCCTCAGTGATTGGAGAAAGCTATAGACTTCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||
| CDS CAA 72 bp | AAAAGTGGTTCTGTAACCGATGATCTGGGTGACAGATaGCAGTTGAAAACGTCATCTATTGAACCTCTAGAT | + |
|
Preference number: 6 (lower is better) Translates to: KSGSVTDDLGDR*QLKTSSIEPLD Trigger: ATCTAGAGGTTCAATAGATGACGTTTTCAACTGCAATCTGTCACCCAGATCATCGGTTACAGAACCACTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093110.12 ENSMUST00000201083.2 |
||