RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MED4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022109

Ensembl transcript IDs: ENSMUST00000022705.7

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AAGGCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTATAGTCTCATGCCAGGGCTaGTATGTACAACCAAACACT +
Preference number: 2 (lower is better)
Translates to: KAARHSQQSLSLPGAGTIVSCQG*YVQPNT
Trigger: AGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGAC...TATAGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR-3UTR GCA 90 bp CTCTTTCTAAGTATGCTCCATGAGTTGTGTGAGTTCCTCTTCAGTCTCATGCCAGGCTCCTTAGGTCTGTaGTTTTCTTTCCCCCTTGAC +
Preference number: 2 (lower is better)
Translates to: LFLSMLHELCEFLFSLMPGSLGL*FSFPLD
Trigger: GTCAAGGGGGAAAGAAAAGCACAGACCTAAGGAGCC...TGGCATGAGACTGAAGAGGAACTCACACAACTCATGGAGCATACTTAGAAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR CCA 72 bp ACAGCGCTCCGATGCCTGTTCTTATCTCTGTTACCCTaGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCCC +
Preference number: 3 (lower is better)
Translates to: TALRCLFLSLLP*WLSSFCSSRRP
Trigger: GGGCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAGAGATAAGAACAGGCATCGGAGCGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR TCA 72 bp CATGGGCTCCTTAGGTCTGTGCTTTTCTTTCCCCCTTaGCAGAACTCTGCCGCACTGGAGTCTGTGCATGCC +
Preference number: 3 (lower is better)
Translates to: HGLLRSVLFFPP*QNSAALESVHA
Trigger: GGCATGCACAGACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGACCTAAGGAGCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR-3UTR CAA 90 bp CTCTTTCTAAGTATGCTCCATGAGTTGTGTGAGTTCCTCTTCAGTCTCATGCCAGCTTTTCTTTCCCCCTaGACAGAACTCTGCCGCACT +
Preference number: 3 (lower is better)
Translates to: LFLSMLHELCEFLFSLMPAFLSP*TELCRT
Trigger: AGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGC...TGGCATGAGACTGAAGAGGAACTCACACAACTCATGGAGCATACTTAGAAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR GCA 72 bp TGCTCCATGAGTTGTGTGAGTTCCTCTTCAGTCTCATaGCAGGGCTGCTATGTACAACCAAACACTACAGTA +
Preference number: 3 (lower is better)
Translates to: CSMSCVSSSSVS*QGCYVQPNTTV
Trigger: TACTGTAGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGACTGAAGAGGAACTCACACAACTCATGGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR TCA 72 bp CAGTATTTACCACATATATATATTGAGTTGTTCAAGTaGGCACTTCTGAAGTATCACACAGCGCTCCGATGC +
Preference number: 3 (lower is better)
Translates to: QYLPHIYIELFK*ALLKYHTALRC
Trigger: GCATCGGAGCGCTGTGTGATACTTCAGAAGTGCTCACTTGAACAACTCAATATATATATGTGGTAAATACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR GCA 90 bp GCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTATAGGTGACTGCCATGGGTACTaGGGAGCAAGGACATCTGGC +
Preference number: 4 (lower is better)
Translates to: AARHSQQSLSLPGAGTIGDCHGY*GARTSG
Trigger: GCCAGATGTCCTTGCTCCGCAGTACCCATGGCAGTC...ACCTATAGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp CTCAAGGCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTCGGAGCAAGGACATCTaGCAGTCTACCTGCTGCAAG +
Preference number: 4 (lower is better)
Translates to: LKAARHSQQSLSLPGAGTRSKDI*QSTCCK
Trigger: CTTGCAGCAGGTAGACTGCCAGATGTCCTTGCTCCG...AGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGCCTTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp GCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTATAGGTCACAGACATGTCATTTaGCTGCCATGGGTACTGCGG +
Preference number: 4 (lower is better)
Translates to: AARHSQQSLSLPGAGTIGHRHVI*LPWVLR
Trigger: CCGCAGTACCCATGGCAGTCAAATGACATGTCTGTG...ACCTATAGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR GCA 90 bp CTCAAGGCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTCCAACAGAAAGTCACTaGTGTGATTTGGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: LKAARHSQQSLSLPGAGTPTESH*CDLVAA
Trigger: TGCTGCCACCAAATCACAGCAGTGACTTTCTGTTGG...AGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGCCTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp CTCAAGGCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTGTCACTGCTGTGATTTaGTGGCAGCATGTTCACAGA +
Preference number: 4 (lower is better)
Translates to: LKAARHSQQSLSLPGAGTVTAVI*WQHVHR
Trigger: TCTGTGAACATGCTGCCACCAAATCACAGCAGTGAC...AGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGCCTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp CTCAAGGCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTACTGCTGTGATTTGGTaGCAGCATGTTCACAGACAT +
Preference number: 4 (lower is better)
Translates to: LKAARHSQQSLSLPGAGTTAVIW*QHVHRH
Trigger: ATGTCTGTGAACATGCTGCCACCAAATCACAGCAGT...AGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGCCTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp GCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTATAGGTTTGCAAGCATTTCTATaGGTTCCCTCGACAAGACCT +
Preference number: 4 (lower is better)
Translates to: AARHSQQSLSLPGAGTIGLQAFL*VPSTRP
Trigger: AGGTCTTGTCGAGGGAACTCATAGAAATGCTTGCAA...ACCTATAGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp GCGGCCCGACACTCACAGCAATCCCTCAGCCTCCCAGGTGCTGGGACTATAGGTGAAGGATTGTTCATCTaGCCCAACAATCCACTTCTC +
Preference number: 4 (lower is better)
Translates to: AARHSQQSLSLPGAGTIGEGLFI*PNNPLL
Trigger: GAGAAGTGGATTGTTGGGTCAGATGAACAATCCTTC...ACCTATAGTCCCAGCACCTGGGAGGCTGAGGGATTGCTGTGAGTGTCGGGCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR GCA 90 bp TATCTCTGTTACCCTGGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCCCGACACTGGTAAACAGCTGTTaGCAGGATCTGCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: YLCYPGGSAHSVAQGGPTLVNSC*QDLLGL
Trigger: GAGGCCGAGCAGATCCTGGCAACAGCTGTTTACCAG...TGTCGGGCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAGAGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp TGTTCTTATCTCTGTTACCCTGGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCCCTCCGAGGGTCTCCTaGAACCCAAGTCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: CSYLCYPGGSAHSVAQGGPPRVS*NPSQWS
Trigger: GCTCCACTGACTTGGGTTCCAGGAGACCCTCGGAGG...GCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAGAGATAAGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR GCA 90 bp TCAGTCTCATGCCAGGGCTGCTATGTACAACCAAACACTACAGTAATTCTGACTTGGCAGTCTACCTGCTaGAAGGGCATCTCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: SVSCQGCYVQPNTTVILTWQSTC*KGISRE
Trigger: CTCCCGGGAGATGCCCTTGCAGCAGGTAGACTGCCA...AGTCAGAATTACTGTAGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp TCCTTAGGTCTGTGCTTTTCTTTCCCCCTTGACAGAACTCTGCCGCACTGGAGTTGGAACCCAAGTCAGTaGAGCACAGACAGCATTGCT +
Preference number: 4 (lower is better)
Translates to: SLGLCFSFPLDRTLPHWSWNPSQ*STDSIA
Trigger: AGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCA...ACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGACCTAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp TATCTCTGTTACCCTGGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCCCGACACATTCACACCACTGGTaGAAGGATTGTTCATCTGAC +
Preference number: 4 (lower is better)
Translates to: YLCYPGGSAHSVAQGGPTHSHHW*KDCSSD
Trigger: GTCAGATGAACAATCCTTCCACCAGTGGTGTGAATG...TGTCGGGCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAGAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp TCCTTAGGTCTGTGCTTTTCTTTCCCCCTTGACAGAACTCTGCCGCACTGGAGTAGAAAGTCACTGCTGTaGTTTGGTGGCAGCATGTTC +
Preference number: 4 (lower is better)
Translates to: SLGLCFSFPLDRTLPHWSRKSLL*FGGSMF
Trigger: GAACATGCTGCCACCAAATCACAGCAGTGACTTTCT...ACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGACCTAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
3UTR CAA 72 bp TCTGGCTCAGTGCTCTTTCTAAGTATGCTCCATGAGTaGTGTGAGTTCCTCTTCAGTCTCATGCCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: SGSVLFLSMLHE*CEFLFSLMPGL
Trigger: CAGCCCTGGCATGAGACTGAAGAGGAACTCACACAACTCATGGAGCATACTTAGAAAGAGCACTGAGCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp TGTGTGAGTTCCTCTTCAGTCTCATGCCAGGGCTGCTATGTACAACCAAACACTAAGTCCCCATCTCGGTaGATTAGCAACTCCAAGACC +
Preference number: 4 (lower is better)
Translates to: CVSSSSVSCQGCYVQPNTKSPSR*ISNSKT
Trigger: GGTCTTGGAGTTGCTAATTCACCGAGATGGGGACTT...AGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGACTGAAGAGGAACTCACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR TCA 90 bp TGTTCTTATCTCTGTTACCCTGGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCTGTTTCTGCAGCTGCTaGATATCACTGTCTCTCTTC +
Preference number: 4 (lower is better)
Translates to: CSYLCYPGGSAHSVAQGGCFCSC*ISLSLF
Trigger: GAAGAGAGACAGTGATATTCAGCAGCTGCAGAAACA...GCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAGAGATAAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR GCA 90 bp CTCTTTCTAAGTATGCTCCATGAGTTGTGTGAGTTCCTCTTCAGTCTCATGCCAGACATGTCATTTGACTaGCATGGGTACTGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: LFLSMLHELCEFLFSLMPDMSFD*HGYCGA
Trigger: TGCTCCGCAGTACCCATGGCAGTCAAATGACATGTC...TGGCATGAGACTGAAGAGGAACTCACACAACTCATGGAGCATACTTAGAAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CCA 90 bp TGTGTGAGTTCCTCTTCAGTCTCATGCCAGGGCTGCTATGTACAACCAAACACTGACCATTCACACCACTaGTGGAAGGATTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: CVSSSSVSCQGCYVQPNTDHSHH*WKDCSS
Trigger: AGATGAACAATCCTTCCACCAGTGGTGTGAATGGTC...AGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGACTGAAGAGGAACTCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 90 bp AGACCTCCAGATCTTCCAGCGCAGACAGAAGCCGCTCTCGCGTACTaGCAAGGCCGGCCATTCCCGAAACGCCTCCCATCCGCTCCTTTT +
Preference number: 5 (lower is better)
Translates to: RPPDLPAQTEAALAY*QGRPFPKRLPSAPF
Trigger: AAAAGGAGCGGATGGGAGGCGTTTCGGGAATGGCCGGCCTTGGCAGTACGCGAGAGCGGCTTCTGTCTGCGCTGGAAGATCTGGAGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 90 bp CTGCCATGGGTACTGCGGAGCAAGGACATCTGGCAGTCTACCTGCTaGAAGGGCATCTCCCGGGAGGTGACCATTCACACCACTGGTGGA +
Preference number: 5 (lower is better)
Translates to: LPWVLRSKDIWQSTC*KGISREVTIHTTGG
Trigger: TCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGTAGACTGCCAGATGTCCTTGCTCCGCAGTACCCATGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp CTGTTACCCTGGTGGCTCAGCTCATTCTGTAGCTCAAGGCGGCCCGACACTCACTCTTCATTTTCTTTGTaGTGCCCAGGAGGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: LLPWWLSSFCSSRRPDTHSSFSL*CPGGSN
Trigger: GTTGGAGCCTCCTGGGCACAACAAAGAAAATGAAGA...GTGAGTGTCGGGCCGCCTTGAGCTACAGAATGAGCTGAGCCACCAGGGTAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 90 bp ATCGGTTGGGTATGGCCTCCGAGGGTCTCCTGGAACCCAAGTCAGTaGAGCACAGACAGCATTGCTTGCACTAATCCTGTGCGCATATTT +
Preference number: 5 (lower is better)
Translates to: IGWVWPPRVSWNPSQ*STDSIACTNPVRIF
Trigger: AAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCAGGAGACCCTCGGAGGCCATACCCAACCGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp GTCTGTGCTTTTCTTTCCCCCTTGACAGAACTCTGCCGCACTGGAGTCTGTGCATCATCTCTAAATCGGTaGGGTATGGCCTCCGAGGGT +
Preference number: 5 (lower is better)
Translates to: VCAFLSPLTELCRTGVCASSLNR*GMASEG
Trigger: ACCCTCGGAGGCCATACCCAACCGATTTAGAGATGA...TGCACAGACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS TCA 90 bp GTCACTGCTGTGATTTGGTGGCAGCATGTTCACAGACATGTCATTTaGCTGCCATGGGTACTGCGGAGCAAGGACATCTGGCAGTCTACC +
Preference number: 5 (lower is better)
Translates to: VTAVIWWQHVHRHVI*LPWVLRSKDIWQST
Trigger: GGTAGACTGCCAGATGTCCTTGCTCCGCAGTACCCATGGCAGTCAAATGACATGTCTGTGAACATGCTGCCACCAAATCACAGCAGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 90 bp CTGCTGCAAGGGCATCTCCCGGGAGGTGACCATTCACACCACTGGTaGAAGGATTGTTCATCTGACCCAACAATCCACTTCTCATCTCTA +
Preference number: 5 (lower is better)
Translates to: LLQGHLPGGDHSHHW*KDCSSDPTIHFSSL
Trigger: TAGAGATGAGAAGTGGATTGTTGGGTCAGATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 90 bp TACCTGCTGCAAGGGCATCTCCCGGGAGGTGACCATTCACACCACTaGTGGAAGGATTGTTCATCTGACCCAACAATCCACTTCTCATCT +
Preference number: 5 (lower is better)
Translates to: YLLQGHLPGGDHSHH*WKDCSSDPTIHFSS
Trigger: AGATGAGAAGTGGATTGTTGGGTCAGATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp GTTCAAGTGAGCACTTCTGAAGTATCACACAGCGCTCCGATGCCTGTTCTTATCCCTGGTAAACAGCTGTaGCCAGGATCTGCTCGGCCT +
Preference number: 5 (lower is better)
Translates to: VQVSTSEVSHSAPMPVLIPGKQL*PGSARP
Trigger: AGGCCGAGCAGATCCTGGCAACAGCTGTTTACCAGG...GATAAGAACAGGCATCGGAGCGCTGTGTGATACTTCAGAAGTGCTCACTTGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp GTCTGTGCTTTTCTTTCCCCCTTGACAGAACTCTGCCGCACTGGAGTCTGTGCAAGTCACTGCTGTGATTaGGTGGCAGCATGTTCACAG +
Preference number: 5 (lower is better)
Translates to: VCAFLSPLTELCRTGVCASHCCD*VAACSQ
Trigger: CTGTGAACATGCTGCCACCAAATCACAGCAGTGACT...TGCACAGACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp TCCTTAGGTCTGTGCTTTTCTTTCCCCCTTGACAGAACTCTGCCGCACTGGAGTTCACAGACATGTCATTaGACTGCCATGGGTACTGCG +
Preference number: 5 (lower is better)
Translates to: SLGLCFSFPLDRTLPHWSSQTCH*TAMGTA
Trigger: CGCAGTACCCATGGCAGTCAAATGACATGTCTGTGA...ACTCCAGTGCGGCAGAGTTCTGTCAAGGGGGAAAGAAAAGCACAGACCTAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 90 bp AGGGTCTCCTGGAACCCAAGTCAGTGGAGCACAGACAGCATTGCTTaGACTAATCCTGTGCGCATATTTAATGATTTCTTCAGAGGAGAT +
Preference number: 5 (lower is better)
Translates to: RVSWNPSQWSTDSIA*TNPVRIFNDFFRGD
Trigger: ATCTCCTCTGAAGAAATCATTAAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCAGGAGACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 90 bp CTTCATTTTCTTTGTTGTGCCCAGGAGGCTCCAACAGAAAGTCACTaGTGTGATTTGGTGGCAGCATGTTCACAGACATGTCATTTGACT +
Preference number: 5 (lower is better)
Translates to: LHFLCCAQEAPTESH*CDLVAACSQTCHLT
Trigger: AGTCAAATGACATGTCTGTGAACATGCTGCCACCAAATCACAGCAGTGACTTTCTGTTGGAGCCTCCTGGGCACAACAAAGAAAATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS-3UTR CAA 90 bp TCAGTCTCATGCCAGGGCTGCTATGTACAACCAAACACTACAGTAATTCTGACTTCATCTTCATTTTCTTaGTTGTGCCCAGGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: SVSCQGCYVQPNTTVILTSSSFS*LCPGGS
Trigger: GGAGCCTCCTGGGCACAACAAAGAAAATGAAGATGA...AGTCAGAATTACTGTAGTGTTTGGTTGTACATAGCAGCCCTGGCATGAGACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 90 bp ACCCAAGTCAGTGGAGCACAGACAGCATTGCTTGCACTAATCCTGTaGGCATATTTAATGATTTCTTCAGAGGAGATAGCACCTTTTCTT +
Preference number: 5 (lower is better)
Translates to: TQVSGAQTALLALIL*AYLMISSEEIAPFL
Trigger: AAGAAAAGGTGCTATCTCCTCTGAAGAAATCATTAAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 72 bp GATCTTCCAGCGCAGACAGAAGCCGCTCTCGCGTACTaGCAAGGCCGGCCATTCCCGAAACGCCTCCCATCC +
Preference number: 6 (lower is better)
Translates to: DLPAQTEAALAY*QGRPFPKRLPS
Trigger: GGATGGGAGGCGTTTCGGGAATGGCCGGCCTTGGCAGTACGCGAGAGCGGCTTCTGTCTGCGCTGGAAGATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 72 bp GTACTGCGGAGCAAGGACATCTGGCAGTCTACCTGCTaGAAGGGCATCTCCCGGGAGGTGACCATTCACACC +
Preference number: 6 (lower is better)
Translates to: VLRSKDIWQSTC*KGISREVTIHT
Trigger: GGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGTAGACTGCCAGATGTCCTTGCTCCGCAGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 72 bp TGGGTACTGCGGAGCAAGGACATCTGGCAGTCTACCTaGTGCAAGGGCATCTCCCGGGAGGTGACCATTCAC +
Preference number: 6 (lower is better)
Translates to: WVLRSKDIWQST*CKGISREVTIH
Trigger: GTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGTAGACTGCCAGATGTCCTTGCTCCGCAGTACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS TCA 72 bp GGCAGTCTACCTGCTGCAAGGGCATCTCCCGGGAGGTaGCCATTCACACCACTGGTGGAAGGATTGTTCATC +
Preference number: 6 (lower is better)
Translates to: GSLPAARASPGR*PFTPLVEGLFI
Trigger: GATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGTAGACTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 72 bp GTATGGCCTCCGAGGGTCTCCTGGAACCCAAGTCAGTaGAGCACAGACAGCATTGCTTGCACTAATCCTGTG +
Preference number: 6 (lower is better)
Translates to: VWPPRVSWNPSQ*STDSIACTNPV
Trigger: CACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCAGGAGACCCTCGGAGGCCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 72 bp GGGCATCTCCCGGGAGGTGACCATTCACACCACTGGTaGAAGGATTGTTCATCTGACCCAACAATCCACTTC +
Preference number: 6 (lower is better)
Translates to: GHLPGGDHSHHW*KDCSSDPTIHF
Trigger: GAAGTGGATTGTTGGGTCAGATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CCA 72 bp CAAGGGCATCTCCCGGGAGGTGACCATTCACACCACTaGTGGAAGGATTGTTCATCTGACCCAACAATCCAC +
Preference number: 6 (lower is better)
Translates to: QGHLPGGDHSHH*WKDCSSDPTIH
Trigger: GTGGATTGTTGGGTCAGATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 72 bp TCTGACCCAACAATCCACTTCTCATCTCTAAATCGGTaGGGTATGGCCTCCGAGGGTCTCCTGGAACCCAAG +
Preference number: 6 (lower is better)
Translates to: SDPTIHFSSLNR*GMASEGLLEPK
Trigger: CTTGGGTTCCAGGAGACCCTCGGAGGCCATACCCAACCGATTTAGAGATGAGAAGTGGATTGTTGGGTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 90 bp GATTGTTCATCTGACCCAACAATCCACTTCTCATCTCTAAATCGGTaGGGTATGGCCTCCGAGGGTCTCCTGGAACCCAAGTCAGTGGAG +
Preference number: 6 (lower is better)
Translates to: DCSSDPTIHFSSLNR*GMASEGLLEPKSVE
Trigger: CTCCACTGACTTGGGTTCCAGGAGACCCTCGGAGGCCATACCCAACCGATTTAGAGATGAGAAGTGGATTGTTGGGTCAGATGAACAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 90 bp AGTCACTGCTGTGATTTGGTGGCAGCATGTTCACAGACATGTCATTaGACTGCCATGGGTACTGCGGAGCAAGGACATCTGGCAGTCTAC +
Preference number: 6 (lower is better)
Translates to: SHCCDLVAACSQTCH*TAMGTAEQGHLAVY
Trigger: GTAGACTGCCAGATGTCCTTGCTCCGCAGTACCCATGGCAGTCAAATGACATGTCTGTGAACATGCTGCCACCAAATCACAGCAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS GCA 72 bp ATGTTCACAGACATGTCATTTGACTGCCATGGGTACTaGGGAGCAAGGACATCTGGCAGTCTACCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: MFTDMSFDCHGY*GARTSGSLPAA
Trigger: TGCAGCAGGTAGACTGCCAGATGTCCTTGCTCCGCAGTACCCATGGCAGTCAAATGACATGTCTGTGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 72 bp TGTGATTTGGTGGCAGCATGTTCACAGACATGTCATTaGACTGCCATGGGTACTGCGGAGCAAGGACATCTG +
Preference number: 6 (lower is better)
Translates to: CDLVAACSQTCH*TAMGTAEQGHL
Trigger: CAGATGTCCTTGCTCCGCAGTACCCATGGCAGTCAAATGACATGTCTGTGAACATGCTGCCACCAAATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 90 bp CTCCGAGGGTCTCCTGGAACCCAAGTCAGTGGAGCACAGACAGCATaGCTTGCACTAATCCTGTGCGCATATTTAATGATTTCTTCAGAG +
Preference number: 6 (lower is better)
Translates to: LRGSPGTQVSGAQTA*LALILCAYLMISSE
Trigger: CTCTGAAGAAATCATTAAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCAGGAGACCCTCGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS CAA 72 bp TCTCCTGGAACCCAAGTCAGTGGAGCACAGACAGCATaGCTTGCACTAATCCTGTGCGCATATTTAATGATT +
Preference number: 6 (lower is better)
Translates to: SPGTQVSGAQTA*LALILCAYLMI
Trigger: AATCATTAAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTCCACTGACTTGGGTTCCAGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7
CDS TCA 72 bp GCTAATTTCATTAGTTCTTGGAAGTCCCCATCTCGGTaGATTAGCAACTCCAAGACCTGGTTTTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: ANFISSWKSPSR*ISNSKTWFSSS
Trigger: GGAAGAGGAAAACCAGGTCTTGGAGTTGCTAATTCACCGAGATGGGGACTTCCAAGAACTAATGAAATTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022705.7