Pregenerated sensors for MED31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020801Ensembl transcript IDs: ENSMUST00000021157.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TACAATAGCAATACATTATATACACGTCCTAAGAGCCTGACCTGGCCCCAGCTCTCTGCTGCTCGTCGATaGACTTCGCACACTGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: YNSNTLYTRPKSLTWPQLSAARR*TSHTAH Trigger: ATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGA...GAGCTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTATTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR GCA 90 bp | ATAACACTAATGGTTCTGAGGGCTACAGTAAAGGGGGCAGAAGAGTCTTTTTCTCCTGCTGTGTTATTCTaGTGCTGCTGCTCGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ITLMVLRATVKGAEESFSPAVLF*CCCSAR Trigger: CCTGGCCGAGCAGCAGCAGCAGAATAACACAGCAGG...AGAAAAAGACTCTTCTGCCCCCTTTACTGTAGCCCTCAGAACCATTAGTGTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR GCA 90 bp | CTGTACAATAGCAATACATTATATACACGTCCTAAGAGCCTGACCTGGCCCCAGATGAACTTCGCACACTaGGCATTCACCAGCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LYNSNTLYTRPKSLTWPQMNFAH*AFTSSL Trigger: CAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCAT...CTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTATTGTACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR GCA 90 bp | CTGTACAATAGCAATACATTATATACACGTCCTAAGAGCCTGACCTGGCCCCAGCATTCACCAGCTCCTTaGGAAAGTGCTCATACTGGA | + |
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Preference number: 4 (lower is better) Translates to: LYNSNTLYTRPKSLTWPQHSPAP*ESAHTG Trigger: TCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATG...CTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTATTGTACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR TCA 90 bp | CTGTACAATAGCAATACATTATATACACGTCCTAAGAGCCTGACCTGGCCCCAGAATTCCAACTCCAACTaGAACCGAAGCCGATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LYNSNTLYTRPKSLTWPQNSNSN*NRSRFP Trigger: TGGAAATCGGCTTCGGTTTCAGTTGGAGTTGGAATT...CTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTATTGTACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR GCA 90 bp | TACAATAGCAATACATTATATACACGTCCTAAGAGCCTGACCTGGCCCCAGCTCGGGTTGGCTAAACATTaGACAAATTCCAACTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: YNSNTLYTRPKSLTWPQLGLAKH*TNSNSN Trigger: GTTGGAGTTGGAATTTGTGCAATGTTTAGCCAACCC...GAGCTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTATTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR GCA 90 bp | AGTAAAGGGGGCAGAAGAGTCTTTTTCTCTGTACTGTACAATAGCAATACATTAAGCTCCTTGCGAAAGTaGTCATACTGGAGCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SKGGRRVFFSVLYNSNTLSSLRK*SYWSSS Trigger: AGAGCTGCTCCAGTATGAGCACTTTCGCAAGGAGCT...TAATGTATTGCTATTGTACAGTACAGAGAAAAAGACTCTTCTGCCCCCTTTACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR CCA 90 bp | AATAACACTAATGGTTCTGAGGGCTACAGTAAAGGGGGCAGAAGAGTCTTTTTCCGAAAGTGCTCATACTaGAGCAGCTCTAACATATGT | + |
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Preference number: 4 (lower is better) Translates to: NNTNGSEGYSKGGRRVFFRKCSY*SSSNIC Trigger: ACATATGTTAGAGCTGCTCCAGTATGAGCACTTTCG...GAAAAAGACTCTTCTGCCCCCTTTACTGTAGCCCTCAGAACCATTAGTGTTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR CCA 90 bp | AATAACACTAATGGTTCTGAGGGCTACAGTAAAGGGGGCAGAAGAGTCTTTTTCGGTACTTTAGATATTTaGCATATTCTGGTTCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: NNTNGSEGYSKGGRRVFFGTLDI*HILVLS Trigger: GGAAAGAACCAGAATATGCCAAATATCTAAAGTACC...GAAAAAGACTCTTCTGCCCCCTTTACTGTAGCCCTCAGAACCATTAGTGTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS TCA 90 bp | GCTTCCGAGAGTAGTGCTGCCAGTGCAGAATCTGCTGCTCGTCGATaGACTTCGCACACTGCGCATTCACCAGCTCCTTGCGAAAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: ASESSAASAESAARR*TSHTAHSPAPCESA Trigger: AGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGATTCTGCACTGGCAGCACTACTCTCGGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS GCA 90 bp | TGCTGCCAGTGCAGAATCTGCTGCTCGTCGATGAACTTCGCACACTaGGCATTCACCAGCTCCTTGCGAAAGTGCTCATACTGGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CCQCRICCSSMNFAH*AFTSSLRKCSYWSS Trigger: GCTGCTCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGATTCTGCACTGGCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS-3UTR CAA 90 bp | ATAACACTAATGGTTCTGAGGGCTACAGTAAAGGGGGCAGAAGAGTCTTTTTCTGCATTCACCAGCTCCTaGCGAAAGTGCTCATACTGG | + |
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Preference number: 5 (lower is better) Translates to: ITLMVLRATVKGAEESFSAFTSS*RKCSYW Trigger: CCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGC...AGAAAAAGACTCTTCTGCCCCCTTTACTGTAGCCCTCAGAACCATTAGTGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS CAA 72 bp | TGCTGTGTTATTCTGCTGCTGCTGCTCGGCCAGGGCTaGCTGAAGACGCACCCGCTTCCGAGAGTAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: CCVILLLLLGQG*LKTHPLPRVVL Trigger: CAGCACTACTCTCGGAAGCGGGTGCGTCTTCAGCAAGCCCTGGCCGAGCAGCAGCAGCAGAATAACACAGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS TCA 72 bp | AGTAGTGCTGCCAGTGCAGAATCTGCTGCTCGTCGATaGACTTCGCACACTGCGCATTCACCAGCTCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SSAASAESAARR*TSHTAHSPAPC Trigger: GCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGATTCTGCACTGGCAGCACTACT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS GCA 72 bp | TGCAGAATCTGCTGCTCGTCGATGAACTTCGCACACTaGGCATTCACCAGCTCCTTGCGAAAGTGCTCATAC | + |
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Preference number: 6 (lower is better) Translates to: CRICCSSMNFAH*AFTSSLRKCSY Trigger: GTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGATTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS CAA 90 bp | TGCTGCTCGTCGATGAACTTCGCACACTGCGCATTCACCAGCTCCTaGCGAAAGTGCTCATACTGGAGCAGCTCTAACATATGTAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: CCSSMNFAHCAFTSS*RKCSYWSSSNICKH Trigger: GTGCTTACATATGTTAGAGCTGCTCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS GCA 72 bp | TTCGCACACTGCGCATTCACCAGCTCCTTGCGAAAGTaGTCATACTGGAGCAGCTCTAACATATGTAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: FAHCAFTSSLRK*SYWSSSNICKH Trigger: GTGCTTACATATGTTAGAGCTGCTCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS CAA 72 bp | TCGATGAACTTCGCACACTGCGCATTCACCAGCTCCTaGCGAAAGTGCTCATACTGGAGCAGCTCTAACATA | + |
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Preference number: 6 (lower is better) Translates to: SMNFAHCAFTSS*RKCSYWSSSNI Trigger: TATGTTAGAGCTGCTCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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| CDS TCA 72 bp | GGGTTGGCTAAACATTGCACAAATTCCAACTCCAACTaGAACCGAAGCCGATTTCCAGCATCATCTGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GLAKHCTNSNSN*NRSRFPASSVS Trigger: GGAGACAGATGATGCTGGAAATCGGCTTCGGTTTCAGTTGGAGTTGGAATTTGTGCAATGTTTAGCCAACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021157.9 |
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