Pregenerated sensors for MED30 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038622Ensembl transcript IDs: ENSMUST00000037115.9
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCGATGCGGCACAGCGTGGCCGTGTTGACCTCGCGCGCGGCCTGCTaGGCCTGCGGGCCGCCGAAGGGCCCGGACGCCATGCCCGTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: PMRHSVAVLTSRAAC*ACGPPKGPDAMPVG Trigger: GCCCACGGGCATGGCGTCCGGGCCCTTCGGCGGCCCGCAGGCTCAGCAGGCCGCGCGCGAGGTCAACACGGCCACGCTGTGCCGCATCGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS TCA 90 bp | TGTCCTGCACGGTCTCCTGCCCGATGCGGCACAGCGTGGCCGTGTTaGCCTCGCGCGCGGCCTGCTGAGCCTGCGGGCCGCCGAAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: CPARSPARCGTAWPC*PRARPAEPAGRRRA Trigger: GGCCCTTCGGCGGCCCGCAGGCTCAGCAGGCCGCGCGCGAGGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS GCA 90 bp | TGGAAGATCTCCATGGTGCGGTACACGATGTCCTGCACGGTCTCCTaGCCGATGCGGCACAGCGTGGCCGTGTTGACCTCGCGCGCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: WKISMVRYTMSCTVS*PMRHSVAVLTSRAA Trigger: GGCCGCGCGCGAGGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACATCGTGTACCGCACCATGGAGATCTTCCA 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS GCA 90 bp | TTCCTGAGCAGCTGGAAGATCTCCATGGTGCGGTACACGATGTCCTaGACGGTCTCCTGCCCGATGCGGCACAGCGTGGCCGTGTTGACC | + |
|
Preference number: 5 (lower is better) Translates to: FLSSWKISMVRYTMS*TVSCPMRHSVAVLT Trigger: GGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACATCGTGTACCGCACCATGGAGATCTTCCAGCTGCTCAGGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS TCA 90 bp | CTCTTCGCTAGCAAAACGAGGTGGACCAGCCCGGTCGTCGTTCTTTaGGCCATCTTCATCCACATATGGAATCAGTTGCTCAACAGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: LFASKTRWTSPVVVL*AIFIHIWNQLLNRN Trigger: ATTCCTGTTGAGCAACTGATTCCATATGTGGATGAAGATGGCTCAAAGAACGACGACCGGGCTGGTCCACCTCGTTTTGCTAGCGAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS TCA 72 bp | CACAGCGTGGCCGTGTTGACCTCGCGCGCGGCCTGCTaGGCCTGCGGGCCGCCGAAGGGCCCGGACGCCATG | + |
|
Preference number: 6 (lower is better) Translates to: HSVAVLTSRAAC*ACGPPKGPDAM Trigger: CATGGCGTCCGGGCCCTTCGGCGGCCCGCAGGCTCAGCAGGCCGCGCGCGAGGTCAACACGGCCACGCTGTG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS TCA 72 bp | CGGTCTCCTGCCCGATGCGGCACAGCGTGGCCGTGTTaGCCTCGCGCGCGGCCTGCTGAGCCTGCGGGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: RSPARCGTAWPC*PRARPAEPAGR Trigger: GCGGCCCGCAGGCTCAGCAGGCCGCGCGCGAGGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS GCA 72 bp | TCCATGGTGCGGTACACGATGTCCTGCACGGTCTCCTaGCCGATGCGGCACAGCGTGGCCGTGTTGACCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SMVRYTMSCTVS*PMRHSVAVLTS Trigger: CGAGGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACATCGTGTACCGCACCATGGA 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS GCA 72 bp | AGCTGGAAGATCTCCATGGTGCGGTACACGATGTCCTaGACGGTCTCCTGCCCGATGCGGCACAGCGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SWKISMVRYTMS*TVSCPMRHSVA Trigger: GGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACATCGTGTACCGCACCATGGAGATCTTCCAGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||
| CDS TCA 72 bp | AGCAAAACGAGGTGGACCAGCCCGGTCGTCGTTCTTTaGGCCATCTTCATCCACATATGGAATCAGTTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SKTRWTSPVVVL*AIFIHIWNQLL Trigger: GAGCAACTGATTCCATATGTGGATGAAGATGGCTCAAAGAACGACGACCGGGCTGGTCCACCTCGTTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037115.9 |
||