Pregenerated sensors for MED28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015804Ensembl transcript IDs: ENSMUST00000118833.3, ENSMUST00000119579.3, ENSMUST00000156481.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAATCCAAGCAGGCTTGTGACCTCATACCTCACCCGAGCCTTCCCTaGGACTCCATTCCTTACCCTGACCAGCACAGCACAGCCCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: QSKQACDLIPHPSLP*DSIPYPDQHSTAQE Trigger: CTCTTGGGCTGTGCTGTGCTGGTCAGGGTAAGGAATGGAGTCCCAGGGAAGGCTCGGGTGAGGTATGAGGTCACAAGCCTGCTTGGATTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 90 bp | ACCTGTGAAATACACTCGCCCTGTGCCGCCCTAGAAGCATCACACTaGCGTGCCAGATTCCTCACGAGGCAGCTCACAGTTTTGGAACAG | + |
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Preference number: 1 (lower is better) Translates to: TCEIHSPCAALEASH*RARFLTRQLTVLEQ Trigger: CTGTTCCAAAACTGTGAGCTGCCTCGTGAGGAATCTGGCACGGCAGTGTGATGCTTCTAGGGCGGCACAGGGCGAGTGTATTTCACAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 90 bp | AAGGAGCCAAGGACAGACAGTTGCAAGTGGCAGAAATCACCACAGTaGTTCATCCTAGAGAAGGCGACCGGTCTGGGATCCATGCATATG | + |
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Preference number: 1 (lower is better) Translates to: KEPRTDSCKWQKSPQ*FILEKATGLGSMHM Trigger: CATATGCATGGATCCCAGACCGGTCGCCTTCTCTAGGATGAAGCACTGTGGTGATTTCTGCCACTTGCAACTGTCTGTCCTTGGCTCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 90 bp | GAACGTACCATCTGGTCTGTTGCCAAAGATGATCACAAGCACAATTaGAGGACAGACAAATACAGCTGTGGAGGAAGGAGCAGAGTGGAG | + |
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Preference number: 1 (lower is better) Translates to: ERTIWSVAKDDHKHN*RTDKYSCGGRSRVE Trigger: CTCCACTCTGCTCCTTCCTCCACAGCTGTATTTGTCTGTCCTGCAATTGTGCTTGTGATCATCTTTGGCAACAGACCAGATGGTACGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 90 bp | AGAGAGCAAAGAATAATGACGCCTAGCTCATGTTTTATTCAGTATTaGACCCCAGCCCTTGGGATGCTGCTGCCCACATACCTCAACCAA | + |
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Preference number: 1 (lower is better) Translates to: REQRIMTPSSCFIQY*TPALGMLLPTYLNQ Trigger: TTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAACATGAGCTAGGCGTCATTATTCTTTGCTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 90 bp | GCTCATGTTTTATTCAGTATTGGACCCCAGCCCTTGGGATGCTGCTaGCCACATACCTCAACCAACATAAACTTCTTCGAAGACATGCTA | + |
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Preference number: 1 (lower is better) Translates to: AHVLFSIGPQPLGCC*PHTSTNINFFEDML Trigger: TAGCATGTCTTCGAAGAAGTTTATGTTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAACATGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 90 bp | CTAGCTCATGTTTTATTCAGTATTGGACCCCAGCCCTTGGGATGCTaGTGCCCACATACCTCAACCAACATAAACTTCTTCGAAGACATG | + |
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Preference number: 1 (lower is better) Translates to: LAHVLFSIGPQPLGC*CPHTSTNINFFEDM Trigger: CATGTCTTCGAAGAAGTTTATGTTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAACATGAGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CAA 90 bp | GACAGAATTTGGGTGAGGTACAGGGAAGGAGCCAAGGACAGACAGTaGCAAGTGGCAGAAATCACCACAGTGCTTCATCCTAGAGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: DRIWVRYREGAKDRQ*QVAEITTVLHPREG Trigger: GCCTTCTCTAGGATGAAGCACTGTGGTGATTTCTGCCACTTGCAACTGTCTGTCCTTGGCTCCTTCCCTGTACCTCACCCAAATTCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | TACTATGGTTCAAGATTTTGGTGGTTCAGTCCACCATGGCTGGGAAGGACAGAGGTCACAGTGTCCAGATaGGAGGCAGAGAGCAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: YYGSRFWWFSPPWLGRTEVTVSR*EAESKE Trigger: TTCTTTGCTCTCTGCCTCCCATCTGGACACTGTGAC...CTCTGTCCTTCCCAGCCATGGTGGACTGAACCACCAAAATCTTGAACCATAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | CAGTTGCAAGTGGCAGAAATCACCACAGTGCTTCATCCTAGAGAAGGCGACCGGCATCCTCCTCATTATTaGCAAACCAGCCAAAATGTA | + |
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Preference number: 2 (lower is better) Translates to: QLQVAEITTVLHPREGDRHPPHY*QTSQNV Trigger: TACATTTTGGCTGGTTTGTCAATAATGAGGAGGATG...CCGGTCGCCTTCTCTAGGATGAAGCACTGTGGTGATTTCTGCCACTTGCAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGGGCGTATATGTGCCCCAATGAGAATTATAAGTGATTTGTCTCACCTGATCCTAGAAGCATCACACTaGCGTGCCAGATTCCTCACG | + |
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Preference number: 2 (lower is better) Translates to: FGRICAPMRIISDLSHLILEASH*RARFLT Trigger: CGTGAGGAATCTGGCACGGCAGTGTGATGCTTCTAG...GATCAGGTGAGACAAATCACTTATAATTCTCATTGGGGCACATATACGCCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCCCCCAGCCCTTGGGATaGTGCTGCCCACATACCTCA | + |
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Preference number: 2 (lower is better) Translates to: FFSWYTSIFTQCIKYASFPQPLG*CCPHTS Trigger: TGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGG...GAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAGAGAGTATACAGACAAAAGAAATGCATTACTGCAGGTAAGAGACCAAGATAGACTAGGCCGGCAGTaGGTGGATGGTGATGCTTAT | + |
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Preference number: 2 (lower is better) Translates to: WREYTDKRNALLQVRDQDRLGRQ*VDGDAY Trigger: ATAAGCATCACCATCCACTCACTGCCGGCCTAGTCT...ATCTTGGTCTCTTACCTGCAGTAATGCATTTCTTTTGTCTGTATACTCTCTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAGAGAGTATACAGACAAAAGAAATGCATTACTGCAGGTAAGAGACCAAGATGCTCGTGTGTGTAACTaGAGCCCTGAGTTCATGTGG | + |
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Preference number: 2 (lower is better) Translates to: WREYTDKRNALLQVRDQDARVCN*SPEFMW Trigger: CCACATGAACTCAGGGCTTCAGTTACACACACGAGC...ATCTTGGTCTCTTACCTGCAGTAATGCATTTCTTTTGTCTGTATACTCTCTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCCCCTTTCAGTGTCAGGTCAACAGCCAGCAAAGTaGCACTTAGGAGGAGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: LHFYSMHQVCKFPLSVSGQQPAK*HLGGER Trigger: TCTCTCTCCTCCTAAGTGGCACTTTGCTGGCTGTTG...ACCTGACACTGAAAGGGGAAACTTGCATACTTGATGCATTGAGTAAAAATGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CAA 90 bp | CTCTTTACAAGGGTACTAATGCCACTCATGAGCAAGCAGCCTTTATaGCTTTATCACCTCCTACCTAACAATTGGGTCCACAAGTGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LFTRVLMPLMSKQPL*LYHLLPNNWVHKCL Trigger: TAAGCACTTGTGGACCCAATTGTTAGGTAGGAGGTGATAAAGCAATAAAGGCTGCTTGCTCATGAGTGGCATTAGTACCCTTGTAAAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCGTGACTGACTGCTCCTaGCCACTGTCCACTAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: FFSWYTSIFTQCIKYASFVTDCS*PLSTRG Trigger: TCCTCTAGTGGACAGTGGTCAGGAGCAGTCAGTCAC...GAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCGAGGAAGGAGCAGAGTaGAGACGGAATAAGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: FFSWYTSIFTQCIKYASFEEGAE*RRNKEL Trigger: CAGCTCCTTATTCCGTCTCCACTCTGCTCCTTCCTC...GAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CAA 90 bp | TCAGGTCATTGTTGGAAAAGTTTAGATCTGGGAGCATTTGGAGTTTaGGATAGGAAATGCCCACTCTCGTTTGCCATAAGTTCCAATGTT | + |
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Preference number: 2 (lower is better) Translates to: SGHCWKSLDLGAFGV*DRKCPLSFAISSNV Trigger: AACATTGGAACTTATGGCAAACGAGAGTGGGCATTTCCTATCCAAAACTCCAAATGCTCCCAGATCTAAACTTTTCCAACAATGACCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | TACTCAGGTAGGCAACTGAAACAAGCAGGAAACTTCCTTGAATCCATTAGGTTACAACAGCTTCAAACTTaGTATGTAGCTGAAGACGAG | + |
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Preference number: 2 (lower is better) Translates to: YSGRQLKQAGNFLESIRLQQLQT*YVAEDE Trigger: CTCGTCTTCAGCTACATAGCAAGTTTGAAGCTGTTG...TAACCTAATGGATTCAAGGAAGTTTCCTGCTTGTTTCAGTTGCCTACCTGAGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGCGTATATGTGCCCCAATGAGAATTATAAGTGATTTGTCTCACCTGATCGGCAGCTCACAGTTTTaGAACAGCACATTTACATCT | + |
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Preference number: 2 (lower is better) Translates to: FGRICAPMRIISDLSHLIGSSQF*NSTFTS Trigger: AGATGTAAATGTGCTGTTCCAAAACTGTGAGCTGCC...GATCAGGTGAGACAAATCACTTATAATTCTCATTGGGGCACATATACGCCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGACATTTCTATATCCACCTTATTCTTTTCTTGGTACACCTCCATTTTTACTCTTAATCCTAGAGCTTaGAAGGAGGAGAGAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: PDISISTLFFSWYTSIFTLNPRA*KEERGR Trigger: CCTGCCTCTCTCCTCCTTCCAAGCTCTAGGATTAAG...AGTAAAAATGGAGGTGTACCAAGAAAAGAATAAGGTGGATATAGAAATGTCAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGACATTTCTATATCCACCTTATTCTTTTCTTGGTACACCTCCATTTTTACTACTCAGGTAGGCAACTaGAACAAGCAGGAAACTTCC | + |
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Preference number: 2 (lower is better) Translates to: PDISISTLFFSWYTSIFTTQVGN*NKQETS Trigger: GGAAGTTTCCTGCTTGTTTCAGTTGCCTACCTGAGT...AGTAAAAATGGAGGTGTACCAAGAAAAGAATAAGGTGGATATAGAAATGTCAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCCCGATCACAAGCACAATTaGAGGACAGACAAATACAGC | + |
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Preference number: 2 (lower is better) Translates to: LFLVHLHFYSMHQVCKFPDHKHN*RTDKYS Trigger: GCTGTATTTGTCTGTCCTGCAATTGTGCTTGTGATC...GGGAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCAAGCTGGAGATGCACTaGCTATTCAAGAGGTATGGA | + |
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Preference number: 2 (lower is better) Translates to: FFSWYTSIFTQCIKYASFKLEMH*LFKRYG Trigger: TCCATACCTCTTGAATAGTCAGTGCATCTCCAGCTT...GAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGACATTTCTATATCCACCTTATTCTTTTCTTGGTACACCTCCATTTTTACTTGGACAAAGCCAAGCTaGAGATGCACTGACTATTCA | + |
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Preference number: 2 (lower is better) Translates to: PDISISTLFFSWYTSIFTWTKPS*RCTDYS Trigger: TGAATAGTCAGTGCATCTCCAGCTTGGCTTTGTCCA...AGTAAAAATGGAGGTGTACCAAGAAAAGAATAAGGTGGATATAGAAATGTCAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CCA 90 bp | CTAAGCACCAAGAATGATTTCAGTATTTCCACCATCCTCCTCATTATTGACAAAATGGAGTATTTGTTTTaGGTAAAGAGAGGTGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: LSTKNDFSISTILLIIDKMEYLF*VKRGAW Trigger: CCAAGCACCTCTCTTTACCCAAAACAAATACTCCAT...TTTGTCAATAATGAGGAGGATGGTGGAAATACTGAAATCATTCTTGGTGCTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTTCTTGGTACACCTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCTCCCAAATGCTACCATaGCAGCCTAAATTTTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: FFSWYTSIFTQCIKYASFSQMLP*QPKFFN Trigger: GTTGAAAAATTTAGGCTGGCATGGTAGCATTTGGGA...GAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAAGAAAAGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | CTGTGCCCTGAGATGAGGCGCAGCAACGGGGCATGCTaGAGCTCCACAGACCAGATGGCAGTGCTCAGACTA | + |
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Preference number: 3 (lower is better) Translates to: LCPEMRRSNGAC*SSTDQMAVLRL Trigger: TAGTCTGAGCACTGCCATCTGGTCTGTGGAGCTTCAGCATGCCCCGTTGCTGCGCCTCATCTCAGGGCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | CCTGACCAGCACAGCACAGCCCAAGAGCACTCAGCATaGCATAGTCCTCATGTGTGTGCCCTCAAGGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: PDQHSTAQEHSA*HSPHVCALKAE Trigger: CTCTGCCTTGAGGGCACACACATGAGGACTATGGCATGCTGAGTGCTCTTGGGCTGTGCTGTGCTGGTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | CACACCAGGTCTGTAAGGAAACGTGTCTGGCAAGACTaGAAGGCTGCAAGACAGGCAGGAGTGCTTAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: HTRSVRKRVWQD*KAARQAGVLRS Trigger: AGACCTAAGCACTCCTGCCTGTCTTGCAGCCTTGCAGTCTTGCCAGACACGTTTCCTTACAGACCTGGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118833.3 |
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| 3UTR GCA 72 bp | GCAGCTTGGAATGTCTGTGTTCAACAGCCAGCAAAGTaGCACTTAGGAGGAGAGAGATGGAGCTGGGGGATG | + |
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Preference number: 3 (lower is better) Translates to: AAWNVCVQQPAK*HLGGERWSWGM Trigger: CATCCCCCAGCTCCATCTCTCTCCTCCTAAGTGGCACTTTGCTGGCTGTTGAACACAGACATTCCAAGCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | AGGACAGACAGTTGCAAGTGGCAGAAATCACCACAGTaGTTCATCCTAGAGAAGGCGACCGGTCTGGGATCC | + |
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Preference number: 3 (lower is better) Translates to: RTDSCKWQKSPQ*FILEKATGLGS Trigger: GGATCCCAGACCGGTCGCCTTCTCTAGGATGAAGCACTGTGGTGATTTCTGCCACTTGCAACTGTCTGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | AGTAACTGGAGCACTGCTGGGTCAGCTTCTGGACACTaGCAGGTGTGTGCTCTCTGTGCAAGGATAGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: SNWSTAGSASGH*QVCALCARIVL Trigger: CAGAACTATCCTTGCACAGAGAGCACACACCTGCCAGTGTCCAGAAGCTGACCCAGCAGTGCTCCAGTTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | AGAATAATGACGCCTAGCTCATGTTTTATTCAGTATTaGACCCCAGCCCTTGGGATGCTGCTGCCCACATAC | + |
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Preference number: 3 (lower is better) Translates to: RIMTPSSCFIQY*TPALGMLLPTY Trigger: GTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAACATGAGCTAGGCGTCATTATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | AAGTATCTTCCATTAGCAGCATATTCTAACCTCTTCTaGGCTACCTGTGAAATACACTCGCCCTGTGCCGCC | + |
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Preference number: 3 (lower is better) Translates to: KYLPLAAYSNLF*ATCEIHSPCAA Trigger: GGCGGCACAGGGCGAGTGTATTTCACAGGTAGCTCAGAAGAGGTTAGAATATGCTGCTAATGGAAGATACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | TTATTCAGTATTGGACCCCAGCCCTTGGGATGCTGCTaGCCACATACCTCAACCAACATAAACTTCTTCGAA | + |
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Preference number: 3 (lower is better) Translates to: LFSIGPQPLGCC*PHTSTNINFFE Trigger: TTCGAAGAAGTTTATGTTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | GTTTTATTCAGTATTGGACCCCAGCCCTTGGGATGCTaGTGCCCACATACCTCAACCAACATAAACTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: VLFSIGPQPLGC*CPHTSTNINFF Trigger: GAAGAAGTTTATGTTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | CATGTTTTATTCAGTATTGGACCCCAGCCCTTGGGATaGTGCTGCCCACATACCTCAACCAACATAAACTTC | + |
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Preference number: 3 (lower is better) Translates to: HVLFSIGPQPLG*CCPHTSTNINF Trigger: GAAGTTTATGTTGGTTGAGGTATGTGGGCAGCAGCATCCCAAGGGCTGGGGTCCAATACTGAATAAAACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | TCTCACCTGATCATCGTTTCAGGTGACGATGAGGTTTaGTGTTCTGAGCCTGTTTACCTCAGCAGAGTAACT | + |
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Preference number: 3 (lower is better) Translates to: SHLIIVSGDDEV*CSEPVYLSRVT Trigger: AGTTACTCTGCTGAGGTAAACAGGCTCAGAACACCAAACCTCATCGTCACCTGAAACGATGATCAGGTGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | GCTACGCAAACTAATACCCAGGACTGGCACAACCAATaGTACTGGAACTGGATAGTCAAGAAGCTAAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: ATQTNTQDWHNQ*YWNWIVKKLSS Trigger: TGAACTTAGCTTCTTGACTATCCAGTTCCAGTACCATTGGTTGTGCCAGTCCTGGGTATTAGTTTGCGTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | CAAACTTGCTATGTAGCTGAAGACGAGATTACACTTTaGGCTTCCTTCCTCTACCTCCCAAATGCTACCATG | + |
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Preference number: 3 (lower is better) Translates to: QTCYVAEDEITL*ASFLYLPNATM Trigger: CATGGTAGCATTTGGGAGGTAGAGGAAGGAAGCTCAAAGTGTAATCTCGTCTTCAGCTACATAGCAAGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | CTAAGGCTCCAGAAACCAAAATGGACAAAGCCAAGCTaGAGATGCACTGACTATTCAAGAGGTATGGAGTAT | + |
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Preference number: 3 (lower is better) Translates to: LRLQKPKWTKPS*RCTDYSRGMEY Trigger: ATACTCCATACCTCTTGAATAGTCAGTGCATCTCCAGCTTGGCTTTGTCCATTTTGGTTTCTGGAGCCTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | AAAGAACTCAGAGAAGTTTACTATGGTTCAAGATTTTaGTGGTTCAGTCCACCATGGCTGGGAAGGACAGAG | + |
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Preference number: 3 (lower is better) Translates to: KELREVYYGSRF*WFSPPWLGRTE Trigger: CTCTGTCCTTCCCAGCCATGGTGGACTGAACCACCAAAATCTTGAACCATAGTAAACTTCTCTGAGTTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | GATTACACTTTGAGCTTCCTTCCTCTACCTCCCAAATaGTACCATGCCAGCCTAAATTTTTCAACACTCTGT | + |
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Preference number: 3 (lower is better) Translates to: DYTLSFLPLPPK*YHASLNFSTLC Trigger: ACAGAGTGTTGAAAAATTTAGGCTGGCATGGTAGCATTTGGGAGGTAGAGGAAGGAAGCTCAAAGTGTAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CCA 72 bp | CAGCCTTTATTGCTTTATCACCTCCTACCTAACAATTaGGTCCACAAGTGCTTAAAAGTGCATAGCAGTGGT | + |
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Preference number: 3 (lower is better) Translates to: QPLLLYHLLPNN*VHKCLKVHSSG Trigger: ACCACTGCTATGCACTTTTAAGCACTTGTGGACCCAATTGTTAGGTAGGAGGTGATAAAGCAATAAAGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | GAAACCAAAATGGACAAAGCCAAGCTGGAGATGCACTaGCTATTCAAGAGGTATGGAGTATTTGTTTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: ETKMDKAKLEMH*LFKRYGVFVLG Trigger: ACCCAAAACAAATACTCCATACCTCTTGAATAGTCAGTGCATCTCCAGCTTGGCTTTGTCCATTTTGGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | CAAAAGAAATGCATTACTGCAGGTAAGAGACCAAGATaGAAGTGGGGAAGCATTCTTCGTAAGTCTCCACTA | + |
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Preference number: 3 (lower is better) Translates to: QKKCITAGKRPR*KWGSILRKSPL Trigger: TAGTGGAGACTTACGAAGAATGCTTCCCCACTTTCATCTTGGTCTCTTACCTGCAGTAATGCATTTCTTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | CTCCAGAAACCAAAATGGACAAAGCCAAGCTGGAGATaGACTGACTATTCAAGAGGTATGGAGTATTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: LQKPKWTKPSWR*TDYSRGMEYLF Trigger: AAACAAATACTCCATACCTCTTGAATAGTCAGTGCATCTCCAGCTTGGCTTTGTCCATTTTGGTTTCTGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | TTGGTACACCTCCATTTTTACTCAATGCATCAAGTATaGAAGTTTCCCCTTTCAGTGTCAGGTCATTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LVHLHFYSMHQV*KFPLSVSGHCW Trigger: CCAACAATGACCTGACACTGAAAGGGGAAACTTGCATACTTGATGCATTGAGTAAAAATGGAGGTGTACCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CAA 90 bp | TTTGGGCGTATATGTGCCCCAATGAGAATTATAAGTGATTTGTCTCACCTGATCAGAGGTATGGAGTATTaGTTTTGGGTAAAGAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: FGRICAPMRIISDLSHLIRGMEY*FWVKRG Trigger: ACCTCTCTTTACCCAAAACAAATACTCCATACCTCT...GATCAGGTGAGACAAATCACTTATAATTCTCATTGGGGCACATATACGCCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR GCA 72 bp | ATACAGTCAAGCATACACATGAAACTAGTAAGACCTTaGATAATCAAGGAAGTCCCTAACTCTAACAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: IQSSIHMKLVRP*IIKEVPNSNRH Trigger: ATGCCTGTTAGAGTTAGGGACTTCCTTGATTATGCAAGGTCTTACTAGTTTCATGTGTATGCTTGACTGTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR-3UTR CAA 90 bp | CCTGACATTTCTATATCCACCTTATTCTTTTCTTGGTACACCTCCATTTTTACTAACACACATGGATCTTaGACCTTCACAAAAACACAC | + |
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Preference number: 3 (lower is better) Translates to: PDISISTLFFSWYTSIFTNTHGS*TFTKTH Trigger: GTGTGTTTTTGTGAAGGTCAAAGATCCATGTGTGTT...AGTAAAAATGGAGGTGTACCAAGAAAAGAATAAGGTGGATATAGAAATGTCAGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | ATAATGAAACCCTACCTTATAAATAGGGACAGAAACTaGTACAAACTCATTATCCAACAGAGTCCTTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: IMKPYLINRDRN*YKLIIQQSPSN Trigger: GTTGGAAGGACTCTGTTGGATAATGAGTTTGTATCAGTTTCTGTCCCTATTTATAAGGTAGGGTTTCATTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| 3UTR TCA 72 bp | GTGGTATATAGCACATGGTTAGCATGTGCAAGGTCCTaGATTCAATCACCAGTAAGACTTAAAATAAATGTT | + |
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Preference number: 3 (lower is better) Translates to: VVYSTWLACARS*IQSPVRLKINV Trigger: AACATTTATTTTAAGTCTTACTGGTGATTGAATTCAGGACCTTGCACATGCTAACCATGTGCTATATACCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| CDS-3UTR GCA 90 bp | GGCAGACGCCTGCTCGAGGAAGGCCAAGGATCCCTGAGGCATGTCAGCCGGCTTGCCCCAGGGGCTGCTTaGAGAAGCGACGCCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GRRLLEEGQGSLRHVSRLAPGAA*RSDAWP Trigger: AGGCCAGGCGTCGCTTCTGCAAGCAGCCCCTGGGGC...AAGCCGGCTGACATGCCTCAGGGATCCTTGGCCTTCCTCGAGCAGGCGTCTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118833.3 |
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| CDS-3UTR CCA 90 bp | TCTGGCAAGACTGCAAGGCTGCAAGACAGGCAGGAGTGCTTAGGTCTGCTTCAGCGGCGGCGGGGGACCTaGAGGCTGCCCAGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: SGKTARLQDRQECLGLLQRRRGT*RLPSEH Trigger: ATGTTCACTGGGCAGCCTCCAGGTCCCCCGCCGCCG...CTGAAGCAGACCTAAGCACTCCTGCCTGTCTTGCAGCCTTGCAGTCTTGCCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118833.3 |
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| CDS-3UTR TCA 90 bp | TCTGTAAGGAAACGTGTCTGGCAAGACTGCAAGGCTGCAAGACAGGCAGGAGTGCTGGAGGCTGCCCAGTaGACATCCCTCCCAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: SVRKRVWQDCKAARQAGVLEAAQ*TSLPGT Trigger: CGTCCCTGGGAGGGATGTTCACTGGGCAGCCTCCAG...CACTCCTGCCTGTCTTGCAGCCTTGCAGTCTTGCCAGACACGTTTCCTTACAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CCA 90 bp | CATTATCCAACAGAGTCCTTCCAACACACCAGGTCTGTAAGGAAACGTGTCTGGTGCAGAAGCGACGCCTaGCCTGGGAGCCCGGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: HYPTESFQHTRSVRKRVWCRSDA*PGSPGG Trigger: GCCGCCCGGGCTCCCAGGCCAGGCGTCGCTTCTGCA...CCAGACACGTTTCCTTACAGACCTGGTGTGTTGGAAGGACTCTGTTGGATAATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CCA 90 bp | CATTATCCAACAGAGTCCTTCCAACACACCAGGTCTGTAAGGAAACGTGTCTGGCGGCGGCGGGGGACCTaGAGGCTGCCCAGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: HYPTESFQHTRSVRKRVWRRRGT*RLPSEH Trigger: ATGTTCACTGGGCAGCCTCCAGGTCCCCCGCCGCCG...CCAGACACGTTTCCTTACAGACCTGGTGTGTTGGAAGGACTCTGTTGGATAATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCTTCCCGGCTTCATAATGAAACCCTACCTTATAAATAGGGACAGAAACTGCAGAAGCGACGCCTaGCCTGGGAGCCCGGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: KALPGFIMKPYLINRDRNCRSDA*PGSPGG Trigger: GCCGCCCGGGCTCCCAGGCCAGGCGTCGCTTCTGCA...GTTTCTGTCCCTATTTATAAGGTAGGGTTTCATTATGAAGCCGGGAAGGGCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCTTCCCGGCTTCATAATGAAACCCTACCTTATAAATAGGGACAGAAACCGGCGGCGGGGGACCTaGAGGCTGCCCAGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: KALPGFIMKPYLINRDRNRRRGT*RLPSEH Trigger: ATGTTCACTGGGCAGCCTCCAGGTCCCCCGCCGCCG...GTTTCTGTCCCTATTTATAAGGTAGGGTTTCATTATGAAGCCGGGAAGGGCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR TCA 90 bp | TTCAAGGCCCTTCCCGGCTTCATAATGAAACCCTACCTTATAAATAGGGACAGACTGGAGGCTGCCCAGTaGACATCCCTCCCAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: FKALPGFIMKPYLINRDRLEAAQ*TSLPGT Trigger: CGTCCCTGGGAGGGATGTTCACTGGGCAGCCTCCAG...TCTGTCCCTATTTATAAGGTAGGGTTTCATTATGAAGCCGGGAAGGGCCTTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR GCA 90 bp | ACAGAAACTGATACAAACTCATTATCCAACAGAGTCCTTCCAACACACCAGGTCGCCCCAGGGGCTGCTTaGAGAAGCGACGCCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TETDTNSLSNRVLPTHQVAPGAA*RSDAWP Trigger: AGGCCAGGCGTCGCTTCTGCAAGCAGCCCCTGGGGC...GACCTGGTGTGTTGGAAGGACTCTGTTGGATAATGAGTTTGTATCAGTTTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000118833.3 ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR GCA 90 bp | CTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCCCCTTTCAGTGTCAGGTGCCCCAGGGGCTGCTTaGAGAAGCGACGCCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LHFYSMHQVCKFPLSVSGAPGAA*RSDAWP Trigger: AGGCCAGGCGTCGCTTCTGCAAGCAGCCCCTGGGGC...ACCTGACACTGAAAGGGGAAACTTGCATACTTGATGCATTGAGTAAAAATGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| CDS-3UTR TCA 90 bp | CAGTCAAGCATACACATGAAACTAGTAAGACCTTGCATAATCAAGGAAGTCCCTCTGGAGGCTGCCCAGTaGACATCCCTCCCAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: QSSIHMKLVRPCIIKEVPLEAAQ*TSLPGT Trigger: CGTCCCTGGGAGGGATGTTCACTGGGCAGCCTCCAG...AGGGACTTCCTTGATTATGCAAGGTCTTACTAGTTTCATGTGTATGCTTGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CAA 72 bp | TGCCGTGCCAGATTCCTCACGAGGCAGCTCACAGTTTaGGAACAGCACATTTACATCTCTGTCTACACTACC | + |
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Preference number: 4 (lower is better) Translates to: CRARFLTRQLTV*EQHIYISVYTT Trigger: GGTAGTGTAGACAGAGATGTAAATGTGCTGTTCCAAAACTGTGAGCTGCCTCGTGAGGAATCTGGCACGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| CDS-3UTR TCA 90 bp | ACAGAAACTGATACAAACTCATTATCCAACAGAGTCCTTCCAACACACCAGGTCGACATCCTCGAAGGATaGCTCCAACTCGTCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: TETDTNSLSNRVLPTHQVDILEG*LQLVHQ Trigger: TTGGTGGACGAGTTGGAGTCATCCTTCGAGGATGTC...GACCTGGTGTGTTGGAAGGACTCTGTTGGATAATGAGTTTGTATCAGTTTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119579.3 |
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| 3UTR CAA 72 bp | AGGGTACTAATGCCACTCATGAGCAAGCAGCCTTTATaGCTTTATCACCTCCTACCTAACAATTGGGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RVLMPLMSKQPL*LYHLLPNNWVH Trigger: GTGGACCCAATTGTTAGGTAGGAGGTGATAAAGCAATAAAGGCTGCTTGCTCATGAGTGGCATTAGTACCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| 3UTR CAA 72 bp | TGTTGGAAAAGTTTAGATCTGGGAGCATTTGGAGTTTaGGATAGGAAATGCCCACTCTCGTTTGCCATAAGT | + |
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Preference number: 4 (lower is better) Translates to: CWKSLDLGAFGV*DRKCPLSFAIS Trigger: ACTTATGGCAAACGAGAGTGGGCATTTCCTATCCAAAACTCCAAATGCTCCCAGATCTAAACTTTTCCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| CDS-3UTR GCA 90 bp | CCTGACATTTCTATATCCACCTTATTCTTTTCTTGGTACACCTCCATTTTTACTACATTCTGTCTGTCTTaGAATGTCCAAAAACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PDISISTLFFSWYTSIFTTFCLS*NVQKLL Trigger: CAGAAGTTTTTGGACATTGCAAGACAGACAGAATGT...AGTAAAAATGGAGGTGTACCAAGAAAAGAATAAGGTGGATATAGAAATGTCAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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| CDS-3UTR CAA 90 bp | CATTATCCAACAGAGTCCTTCCAACACACCAGGTCTGTAAGGAAACGTGTCTGGATGTCAGCCGGCTTCTaGTGCTGCACATTGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: HYPTESFQHTRSVRKRVWMSAGF*CCTLMS Trigger: GGACATCAATGTGCAGCACAAGAAGCCGGCTGACAT...CCAGACACGTTTCCTTACAGACCTGGTGTGTTGGAAGGACTCTGTTGGATAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CAA 90 bp | ACAGAAACTGATACAAACTCATTATCCAACAGAGTCCTTCCAACACACCAGGTCATGTCAGCCGGCTTCTaGTGCTGCACATTGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: TETDTNSLSNRVLPTHQVMSAGF*CCTLMS Trigger: GGACATCAATGTGCAGCACAAGAAGCCGGCTGACAT...GACCTGGTGTGTTGGAAGGACTCTGTTGGATAATGAGTTTGTATCAGTTTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119579.3 ENSMUST00000156481.8 |
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| CDS-3UTR CAA 90 bp | CTCCATTTTTACTCAATGCATCAAGTATGCAAGTTTCCCCTTTCAGTGTCAGGTAACATTCTGTCTGTCTaGCAATGTCCAAAAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: LHFYSMHQVCKFPLSVSGNILSV*QCPKTS Trigger: AGAAGTTTTTGGACATTGCAAGACAGACAGAATGTT...ACCTGACACTGAAAGGGGAAACTTGCATACTTGATGCATTGAGTAAAAATGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000156481.8 |
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