Pregenerated sensors for MED27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026799Ensembl transcript IDs: ENSMUST00000028139.11, ENSMUST00000113830.11, ENSMUST00000159034.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATGTGCCTGAGCCAGGCTTCAACCACCGACTTGGTTTGCTGGGCTaGTCTGGCTCACTGCAGGAGATCACGCACAGCAGAACCTCTAGT | + |
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Preference number: 1 (lower is better) Translates to: YVPEPGFNHRLGLLG*SGSLQEITHSRTSS Trigger: ACTAGAGGTTCTGCTGTGCGTGATCTCCTGCAGTGAGCCAGAGCAGCCCAGCAAACCAAGTCGGTGGTTGAAGCCTGGCTCAGGCACATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR CCA 90 bp | CATAACCAATGTAAGAATGAAGAGGTTCATTCCATTAACAGCTCATaGGAGCAGCAGACCCAGGGGCCAGCACACAGGGAAGGGGCAGAC | + |
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Preference number: 1 (lower is better) Translates to: HNQCKNEEVHSINSS*EQQTQGPAHREGAD Trigger: GTCTGCCCCTTCCCTGTGTGCTGGCCCCTGGGTCTGCTGCTCCCATGAGCTGTTAATGGAATGAACCTCTTCATTCTTACATTGGTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR TCA 90 bp | ACATGCACACTTCCTACACATCCGAAATACACAGAGGCACAAGCATaGAGAAGTACAAAGCCCATGTTTTCTTACCAGGCTTGTAAAATG | + |
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Preference number: 1 (lower is better) Translates to: TCTLPTHPKYTEAQA*RSTKPMFSYQACKM Trigger: CATTTTACAAGCCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTGTATTTCGGATGTGTAGGAAGTGTGCATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR-3UTR GCA 90 bp | CATCCTCCCGTGATGCCCCATCATGACATGCAGCTGACAGTTCTGCCAGGGAGAGGAAGGCAGCCTGTCTaGAGGCTGCCCTGTGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: HPPVMPHHDMQLTVLPGRGRQPV*RLPCAG Trigger: CCCAGCACAGGGCAGCCTGCAGACAGGCTGCCTTCC...TCTCCCTGGCAGAACTGTCAGCTGCATGTCATGATGGGGCATCACGGGAGGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR-3UTR TCA 90 bp | GAGGTTCATTCCATTAACAGCTCATGGGAGCAGCAGACCCAGGGGCCAGCACACCGTGATGCCCCATCATaGCATGCAGCTGACAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: EVHSINSSWEQQTQGPAHRDAPS*HAADSS Trigger: AGAACTGTCAGCTGCATGTCATGATGGGGCATCACG...GTGTGCTGGCCCCTGGGTCTGCTGCTCCCATGAGCTGTTAATGGAATGAACCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR-3UTR CCA 90 bp | AAGAGGTTCATTCCATTAACAGCTCATGGGAGCAGCAGACCCAGGGGCCAGCACCTCCTGTGTGGTGAATaGGTCGGGCTGTTTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KRFIPLTAHGSSRPRGQHLLCGE*VGLFGK Trigger: CTTCCCAAACAGCCCGACCCATTCACCACACAGGAG...GTGCTGGCCCCTGGGTCTGCTGCTCCCATGAGCTGTTAATGGAATGAACCTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR-3UTR CCA 90 bp | CAGAGACAGACAGATTTCTGTGAGTTTGAGGCCAGCCTGGGCTATACAGTGAGTCTTCAACCACCGACTTaGTTTGCTGGGCTGCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: QRQTDFCEFEASLGYTVSLQPPT*FAGLLW Trigger: CCAGAGCAGCCCAGCAAACCAAGTCGGTGGTTGAAG...ACTCACTGTATAGCCCAGGCTGGCCTCAAACTCACAGAAATCTGTCTGTCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR-3UTR TCA 90 bp | ATAGAAATAATAGAGGGACACTCAATGTCACCTTTGGTCTCTACAAGTGCACACGAGCACCTATGTGCCTaGGCCAGGCTTCAACCACCG | + |
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Preference number: 2 (lower is better) Translates to: IEIIEGHSMSPLVSTSAHEHLCA*ARLQPP Trigger: CGGTGGTTGAAGCCTGGCTCAGGCACATAGGTGCTC...GTGTGCACTTGTAGAGACCAAAGGTGACATTGAGTGTCCCTCTATTATTTCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR-3UTR GCA 90 bp | ATAGAAATAATAGAGGGACACTCAATGTCACCTTTGGTCTCTACAAGTGCACACGGCAAACACTGCTGGTaGAGCACAGAATTATGGCAT | + |
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Preference number: 2 (lower is better) Translates to: IEIIEGHSMSPLVSTSAHGKHCW*STELWH Trigger: ATGCCATAATTCTGTGCTGCACCAGCAGTGTTTGCC...GTGTGCACTTGTAGAGACCAAAGGTGACATTGAGTGTCCCTCTATTATTTCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR GCA 72 bp | ATGTGCCTGAGCCAGGCTTCAACCACCGACTTGGTTTaGTGGGCTGCTCTGGCTCACTGCAGGAGATCACGC | + |
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Preference number: 3 (lower is better) Translates to: MCLSQASTTDLV*WAALAHCRRSR Trigger: GCGTGATCTCCTGCAGTGAGCCAGAGCAGCCCAGCAAACCAAGTCGGTGGTTGAAGCCTGGCTCAGGCACAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR CCA 72 bp | GCCAGGGAGAACAGTGGTAGACTCCTGTGTGGTGAATaGGTCGGGCTGTTTGGGAAGGCAGCCTGTCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: ARENSGRLLCGE*VGLFGKAACLQ Trigger: CTGCAGACAGGCTGCCTTCCCAAACAGCCCGACCCATTCACCACACAGGAGTCTACCACTGTTCTCCCTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR TCA 72 bp | GGAAGGGGCAGACCATCCTCCCGTGATGCCCCATCATaGCATGCAGCTGACAGTTCTGCCAGGGAGAACAGT | + |
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Preference number: 3 (lower is better) Translates to: GRGRPSSRDAPS*HAADSSARENS Trigger: ACTGTTCTCCCTGGCAGAACTGTCAGCTGCATGTCATGATGGGGCATCACGGGAGGATGGTCTGCCCCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR GCA 72 bp | ACCACCGACTTGGTTTGCTGGGCTGCTCTGGCTCACTaGAGGAGATCACGCACAGCAGAACCTCTAGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TTDLVCWAALAH*RRSRTAEPLVS Trigger: GGAGACTAGAGGTTCTGCTGTGCGTGATCTCCTGCAGTGAGCCAGAGCAGCCCAGCAAACCAAGTCGGTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR GCA 72 bp | AGCTCAGGTTCTGCTCGCTCCGGCAAACACTGCTGGTaGAGCACAGAATTATGGCATGGGCGGTTGTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: SSGSARSGKHCW*STELWHGRLSG Trigger: TCCTGACAACCGCCCATGCCATAATTCTGTGCTGCACCAGCAGTGTTTGCCGGAGCGAGCAGAACCTGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR TCA 72 bp | ATTTCTGTGAGTTTGAGGCCAGCCTGGGCTATACAGTaGGTTGTAGGTCAGCCAGGGTTGCATAGTGAGACC | + |
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Preference number: 3 (lower is better) Translates to: ISVSLRPAWAIQ*VVGQPGLHSET Trigger: GGTCTCACTATGCAACCCTGGCTGACCTACAACTCACTGTATAGCCCAGGCTGGCCTCAAACTCACAGAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR CCA 72 bp | TGTAAGAATGAAGAGGTTCATTCCATTAACAGCTCATaGGAGCAGCAGACCCAGGGGCCAGCACACAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: CKNEEVHSINSS*EQQTQGPAHRE Trigger: TTCCCTGTGTGCTGGCCCCTGGGTCTGCTGCTCCCATGAGCTGTTAATGGAATGAACCTCTTCATTCTTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| 3UTR TCA 72 bp | GGGCGGTTGTCAGGAGTGTCTGATAGACAGTTAAAATaGAGGCCTAAGCCTTTAGAGGGCTGGGAGAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: GRLSGVSDRQLK*RPKPLEGWEKS Trigger: AGACTTCTCCCAGCCCTCTAAAGGCTTAGGCCTTCATTTTAACTGTCTATCAGACACTCCTGACAACCGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR-3UTR CAA 90 bp | TGCAGCACAGAATTATGGCATGGGCGGTTGTCAGGAGTGTCTGATAGACAGTTAGATATATTGAAGAGTTaGGAGGAAGGAAGGGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: CSTELWHGRLSGVSDRQLDILKS*EEGRES Trigger: GCTTTCCCTTCCTTCCTCCAAACTCTTCAATATATC...TAACTGTCTATCAGACACTCCTGACAACCGCCCATGCCATAATTCTGTGCTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR GCA 72 bp | ACTCAATGTCACCTTTGGTCTCTACAAGTGCACACATaGACACTTCCTACACATCCGAAATACACAGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: TQCHLWSLQVHT*TLPTHPKYTEA Trigger: TGCCTCTGTGTATTTCGGATGTGTAGGAAGTGTGCATGTGTGCACTTGTAGAGACCAAAGGTGACATTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR GCA 72 bp | AGAGGGACACTCAATGTCACCTTTGGTCTCTACAAGTaGACACATGCACACTTCCTACACATCCGAAATACA | + |
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Preference number: 3 (lower is better) Translates to: RGTLNVTFGLYK*THAHFLHIRNT Trigger: TGTATTTCGGATGTGTAGGAAGTGTGCATGTGTGCACTTGTAGAGACCAAAGGTGACATTGAGTGTCCCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR TCA 72 bp | CTTCCTACACATCCGAAATACACAGAGGCACAAGCATaGAGAAGTACAAAGCCCATGTTTTCTTACCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: LPTHPKYTEAQA*RSTKPMFSYQA Trigger: AGCCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTGTATTTCGGATGTGTAGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| 3UTR CAA 72 bp | GCACCTATGTGCCTGAGCCAGGCTTCAACCACCGACTaGGTTTGCTGGGCTGCTCTGGCTCACTGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: APMCLSQASTTD*VCWAALAHCRR Trigger: TCTCCTGCAGTGAGCCAGAGCAGCCCAGCAAACCAAGTCGGTGGTTGAAGCCTGGCTCAGGCACATAGGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR CCA 90 bp | GAATGGGTCGGGCTGTTTGGGAAGGCAGCCTGTCTGCAGGCTGCCCTGTGCTGGCGCTTCAAGGACTGTTaGTTCAAAAGGCCAGACGCT | + |
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Preference number: 4 (lower is better) Translates to: EWVGLFGKAACLQAALCWRFKDC*FKRPDA Trigger: AGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCG...CCAGCACAGGGCAGCCTGCAGACAGGCTGCCTTCCCAAACAGCCCGACCCATTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CCA 90 bp | AAGGTGAGCACCTATGTGCCTGAGCCAGGCTTCAACCACCGACTTGGTTTGCTGCGCTTCAAGGACTGTTaGTTCAAAAGGCCAGACGCT | + |
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Preference number: 4 (lower is better) Translates to: KVSTYVPEPGFNHRLGLLRFKDC*FKRPDA Trigger: AGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCG...CAGCAAACCAAGTCGGTGGTTGAAGCCTGGCTCAGGCACATAGGTGCTCACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR CCA 90 bp | TGTGGTGAATGGGTCGGGCTGTTTGGGAAGGCAGCCTGTCTGCAGGCTGCCCTGGTCTCGATAAGTGAATaGACATCTCTGGAAACATTC | + |
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Preference number: 4 (lower is better) Translates to: CGEWVGLFGKAACLQAALVSISE*TSLETF Trigger: GAATGTTTCCAGAGATGTCCATTCACTTATCGAGAC...CAGGGCAGCCTGCAGACAGGCTGCCTTCCCAAACAGCCCGACCCATTCACCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR GCA 90 bp | AGAACAGTGGTAGACTCCTGTGTGGTGAATGGGTCGGGCTGTTTGGGAAGGCAGAGACCTGCATGGTACTaGAGCTTGTTGGACCATTTG | + |
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Preference number: 4 (lower is better) Translates to: RTVVDSCVVNGSGCLGRQRPAWY*SLLDHL Trigger: CAAATGGTCCAACAAGCTGCAGTACCATGCAGGTCT...CTGCCTTCCCAAACAGCCCGACCCATTCACCACACAGGAGTCTACCACTGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CCA 90 bp | AATACACAGAGGCACAAGCATGAAGAAGTACAAAGCCCATGTTTTCTTACCAGGGACGCTAGACCTGCATaGTACTGCAGCTTGTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: NTQRHKHEEVQSPCFLTRDARPA*YCSLLD Trigger: GTCCAACAAGCTGCAGTACCATGCAGGTCTAGCGTC...CCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR TCA 90 bp | GAATTTGAAAGAGAGCAAGGGGTGGGGGATATATTGAAGAGTTTGGAGGAAGGAGGGCCAGTAATGCTCTaGGCAGAGCTGTTTATAAGA | + |
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Preference number: 4 (lower is better) Translates to: EFEREQGVGDILKSLEEGGPVML*AELFIR Trigger: TCTTATAAACAGCTCTGCTCAGAGCATTACTGGCCC...TCCTTCCTCCAAACTCTTCAATATATCCCCCACCCCTTGCTCTCTTTCAAATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000113830.11 ENSMUST00000159034.2 |
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| CDS-3UTR GCA 90 bp | GGTCATGAATTTGAAAGAGAGCAAGGGGTGGGGGATATATTGAAGAGTTTGGAGAGACCTGCATGGTACTaGAGCTTGTTGGACCATTTG | + |
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Preference number: 4 (lower is better) Translates to: GHEFEREQGVGDILKSLERPAWY*SLLDHL Trigger: CAAATGGTCCAACAAGCTGCAGTACCATGCAGGTCT...CTCCAAACTCTTCAATATATCCCCCACCCCTTGCTCTCTTTCAAATTCATGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR TCA 90 bp | AATACACAGAGGCACAAGCATGAAGAAGTACAAAGCCCATGTTTTCTTACCAGGGGGCCAGTAATGCTCTaGGCAGAGCTGTTTATAAGA | + |
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Preference number: 4 (lower is better) Translates to: NTQRHKHEEVQSPCFLTRGPVML*AELFIR Trigger: TCTTATAAACAGCTCTGCTCAGAGCATTACTGGCCC...CCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTGTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR CCA 90 bp | AAGTTACAAAACCAACCAAGCATAACCAATGTAAGAATGAAGAGGTTCATTCCAGACGCTAGACCTGCATaGTACTGCAGCTTGTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: KLQNQPSITNVRMKRFIPDARPA*YCSLLD Trigger: GTCCAACAAGCTGCAGTACCATGCAGGTCTAGCGTC...TGGAATGAACCTCTTCATTCTTACATTGGTTATGCTTGGTTGGTTTTGTAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CAA 90 bp | AATGGGTCGGGCTGTTTGGGAAGGCAGCCTGTCTGCAGGCTGCCCTGTGCTGGGGCATGGTACTGCAGCTaGTTGGACCATTTGTATGCT | + |
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Preference number: 5 (lower is better) Translates to: NGSGCLGRQPVCRLPCAGAWYCS*LDHLYA Trigger: AGCATACAAATGGTCCAACAAGCTGCAGTACCATGC...CCCAGCACAGGGCAGCCTGCAGACAGGCTGCCTTCCCAAACAGCCCGACCCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CAA 90 bp | AGAACAGTGGTAGACTCCTGTGTGGTGAATGGGTCGGGCTGTTTGGGAAGGCAGGCGCTTCAAGGACTGTaGGTTCAAAAGGCCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: RTVVDSCVVNGSGCLGRQALQGL*VQKARR Trigger: GCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGC...CTGCCTTCCCAAACAGCCCGACCCATTCACCACACAGGAGTCTACCACTGTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CAA 90 bp | AAGGTGAGCACCTATGTGCCTGAGCCAGGCTTCAACCACCGACTTGGTTTGCTGGCGCTTCAAGGACTGTaGGTTCAAAAGGCCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: KVSTYVPEPGFNHRLGLLALQGL*VQKARR Trigger: GCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGC...CAGCAAACCAAGTCGGTGGTTGAAGCCTGGCTCAGGCACATAGGTGCTCACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR CAA 90 bp | CTGCCAGGGAGAACAGTGGTAGACTCCTGTGTGGTGAATGGGTCGGGCTGTTTGAAACGTTCCAGTTCATaGAGGTCCCGGTTGACGGAA | + |
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Preference number: 5 (lower is better) Translates to: LPGRTVVDSCVVNGSGCLKRSSS*RSRLTE Trigger: TTCCGTCAACCGGGACCTCAATGAACTGGAACGTTT...CAAACAGCCCGACCCATTCACCACACAGGAGTCTACCACTGTTCTCCCTGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CAA 90 bp | TCTGCCAGGGAGAACAGTGGTAGACTCCTGTGTGGTGAATGGGTCGGGCTGTTTGGACCATTTGTATGCTaGCAGAAGCTGGCTGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: SARENSGRLLCGEWVGLFGPFVC*QKLAVE Trigger: CTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCC...AAACAGCCCGACCCATTCACCACACAGGAGTCTACCACTGTTCTCCCTGGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028139.11 |
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| CDS-3UTR CAA 90 bp | CACAGAGGCACAAGCATGAAGAAGTACAAAGCCCATGTTTTCTTACCAGGCTTGAAACGTTCCAGTTCATaGAGGTCCCGGTTGACGGAA | + |
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Preference number: 5 (lower is better) Translates to: HRGTSMKKYKAHVFLPGLKRSSS*RSRLTE Trigger: TTCCGTCAACCGGGACCTCAATGAACTGGAACGTTT...CAAGCCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS-3UTR CAA 90 bp | CACAGAGGCACAAGCATGAAGAAGTACAAAGCCCATGTTTTCTTACCAGGCTTGGGACCATTTGTATGCTaGCAGAAGCTGGCTGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: HRGTSMKKYKAHVFLPGLGPFVC*QKLAVE Trigger: CTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCC...CAAGCCTGGTAAGAAAACATGGGCTTTGTACTTCTTCATGCTTGTGCCTCTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113830.11 |
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| CDS GCA 72 bp | ACCTGCATGGTACTGCAGCTTGTTGGACCATTTGTATaGTTGCAGAAGCTGGCTGTAGAGTGGGGTTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: TCMVLQLVGPFV*LQKLAVEWGFV Trigger: GACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCCAACAAGCTGCAGTACCATGCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028139.11 ENSMUST00000113830.11 |
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