Pregenerated sensors for MED18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066042Ensembl transcript IDs: ENSMUST00000102567.4, ENSMUST00000123604.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGTTGAAAGGAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGTaGGCCCGGCTGGCAGCAGTACCTGGGCTACTTTCGAAGTCTCTC | + |
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Preference number: 1 (lower is better) Translates to: TVERNQVSPSSSGRK*ARLAAVPGLLSKSL Trigger: GAGAGACTTCGAAAGTAGCCCAGGTACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGGCGAGACCTGGTTCCTTTCAACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR TCA 90 bp | GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTaGGTTCCAGGGCAGCCAAAGCAACACAGAGAAACCCTGTCTTGT | + |
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Preference number: 1 (lower is better) Translates to: EAGGFLSLRPAWSTK*VPGQPKQHRETLSC Trigger: ACAAGACAGGGTTTCTCTGTGTTGCTTTGGCTGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR-3UTR CCA 90 bp | TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAATCTTCTGGAAGGAAGTaGGCCCGGCTGGCAGCAGTA | + |
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Preference number: 2 (lower is better) Translates to: SGGRGRWISEFEASLVYKSSGRK*ARLAAV Trigger: TACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGA...TTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR-3UTR CCA 90 bp | GTGAAGGAAACAGTTGAAAGGAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGGCTGGCAGCAGTACCTaGGCTACTTTCGAAGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: VKETVERNQVSPSSSGRKAGSST*ATFEVS Trigger: AGAGACTTCGAAAGTAGCCCAGGTACTGCTGCCAGC...CTTCCTTCCAGAAGATGATGGCGAGACCTGGTTCCTTTCAACTGTTTCCTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR CCA 72 bp | TTCTGGAAGGAAGTGGGCCCGGCTGGCAGCAGTACCTaGGCTACTTTCGAAGTCTCTCACCTCCCAGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: FWKEVGPAGSST*ATFEVSHLPGG Trigger: CCCACCTGGGAGGTGAGAGACTTCGAAAGTAGCCCAGGTACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR CCA 72 bp | AGGAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGTaGGCCCGGCTGGCAGCAGTACCTGGGCTACTTTCG | + |
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Preference number: 3 (lower is better) Translates to: RNQVSPSSSGRK*ARLAAVPGLLS Trigger: CGAAAGTAGCCCAGGTACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGGCGAGACCTGGTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR TCA 72 bp | GGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTaGGTTCCAGGGCAGCCAAAGCAACACAGAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: GFLSLRPAWSTK*VPGQPKQHRET Trigger: GGTTTCTCTGTGTTGCTTTGGCTGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR TCA 72 bp | TATTCCAGTTCCCTCTTTTTGAGTGGAGGGAGGACTTaGACAAATCTCCATATTATCCTGGGTCTTTCATTG | + |
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Preference number: 3 (lower is better) Translates to: YSSSLFLSGGRT*TNLHIILGLSL Trigger: CAATGAAAGACCCAGGATAATATGGAGATTTGTTCAAGTCCTCCCTCCACTCAAAAAGAGGGAACTGGAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | GAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGTGGGCCCGGCTGGCAGCAGTATGCCAGGGTGCCCCTaGCCTGTCCATGGAGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: EPGLAIIFWKEVGPAGSSMPGCP*PVHGAP Trigger: CGGCGCTCCATGGACAGGGCAGGGGCACCCTGGCAT...ACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGGCGAGACCTGGTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | GCCCGGCTGGCAGCAGTACCTGGGCTACTTTCGAAGTCTCTCACCTCCCAGGTGTCAGAGACCATGTCCTaGCCAGCCGGGGCGACAACA | + |
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Preference number: 4 (lower is better) Translates to: ARLAAVPGLLSKSLTSQVSETMS*PAGATT Trigger: TGTTGTCGCCCCGGCTGGGCAGGACATGGTCTCTGA...CACCTGGGAGGTGAGAGACTTCGAAAGTAGCCCAGGTACTGCTGCCAGCCGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | GAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGTGGGCCCGGCTGGCAGCAGTACGAACGGGCTGGCCTaGTGGCCCTTAAGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: EPGLAIIFWKEVGPAGSSTNGLA*WPLSRK Trigger: CTTCCTGCTTAAGGGCCAGCAGGCCAGCCCGTTCGT...ACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGGCGAGACCTGGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | AGTACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTGGGACAGGGCCTCGGTaGTGTCCGTGTTCCCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: STREAEAGGFLSLRPAWSGTGPR*CPCSLG Trigger: TCCCAGGGAACACGGACAGCACCGAGGCCCTGTCCC...AGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | CAGTACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCAACGGGCTGGCCTGCTaGCCCTTAAGCAGGAAGACC | + |
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Preference number: 4 (lower is better) Translates to: QYSGGRGRWISEFEASLVNGLAC*PLSRKT Trigger: GGTCTTCCTGCTTAAGGGCCAGCAGGCCAGCCCGTT...GACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | CCATCATCTTCTGGAAGGAAGTGGGCCCGGCTGGCAGCAGTACCTGGGCTACTTTTGCGCACCAGGGCGTaGCGGTTCTTGTCTCCCATT | + |
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Preference number: 4 (lower is better) Translates to: PSSSGRKWARLAAVPGLLLRTRA*RFLSPI Trigger: AATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAA...AAGTAGCCCAGGTACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | GCCCGGCTGGCAGCAGTACCTGGGCTACTTTCGAAGTCTCTCACCTCCCAGGTGAGGCTTTCCAAACTGTaGTCCAAAACACTTCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: ARLAAVPGLLSKSLTSQVRLSKL*SKTLPC Trigger: GCAGGGAAGTGTTTTGGACCACAGTTTGGAAAGCCT...CACCTGGGAGGTGAGAGACTTCGAAAGTAGCCCAGGTACTGCTGCCAGCCGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | CAAAGTGAGTTCCAGGGCAGCCAAAGCAACACAGAGAAACCCTGTCTTGTATTGCCCCTGCCCTGTCCATaGAGCGCCGGGCCCTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: QSEFQGSQSNTEKPCLVLPLPCP*SAGPLG Trigger: TCCTAAGGGCCCGGCGCTCCATGGACAGGGCAGGGG...CAATACAAGACAGGGTTTCTCTGTGTTGCTTTGGCTGCCCTGGAACTCACTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR TCA 90 bp | ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGGTGAACCAGAGGTTTaGGCTGCTCTGCAAAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: TREAEAGGFLSLRPAWSTGEPEV*AALQSS Trigger: GGAACTTTGCAGAGCAGCTCAAACCTCTGGTTCACC...TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | CAGTACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCCAAACTCATGGTCCATaGGGAAGCCCATCTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: QYSGGRGRWISEFEASLVQTHGP*GSPSPS Trigger: TGATGGAGATGGGCTTCCGCATGGACCATGAGTTTG...GACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACATTGGCGACAAACTCATaGTCCATGCGGAAGCCCATC | + |
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Preference number: 4 (lower is better) Translates to: TREAEAGGFLSLRPAWSTLATNS*SMRKPI Trigger: GATGGGCTTCCGCATGGACCATGAGTTTGTCGCCAA...TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | GAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGTGGGCCCGGCTGGCAGCAGTAGGTTTGAGCTGCTCTaGAAAGTTCCTCATGTCATC | + |
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Preference number: 4 (lower is better) Translates to: EPGLAIIFWKEVGPAGSSRFELL*KVPHVI Trigger: GATGACATGAGGAACTTTGCAGAGCAGCTCAAACCT...ACTGCTGCCAGCCGGGCCCACTTCCTTCCAGAAGATGATGGCGAGACCTGGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAACCTCGGAGGCGATaGATGAGGCTTTCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: TREAEAGGFLSLRPAWSTKPRRR*MRLSKL Trigger: CAGTTTGGAAAGCCTCATCCATCGCCTCCGAGGTTT...TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | AAGAGACATTACCAAGTGAAGGAAACAGTTGAAAGGAACCAGGTCTCGCCATCACCCAGGTATCGCAGATaGCAGGGTGCCCCTGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KRHYQVKETVERNQVSPSPRYRR*QGAPAL Trigger: CAGGGCAGGGGCACCCTGGCATCTGCGATACCTGGG...TGATGGCGAGACCTGGTTCCTTTCAACTGTTTCCTTCACTTGGTAATGTCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAATCCAAAACACTTCCCTaGAGGAGGTACTCCATCATG | + |
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Preference number: 4 (lower is better) Translates to: SGGRGRWISEFEASLVYKSKTLP*RRYSIM Trigger: CATGATGGAGTACCTCCTGCAGGGAAGTGTTTTGGA...TTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | TTCCAGTTCCCTCTTTTTGAGTGGAGGGAGGACTTGAACAAATCTCCATATTATCGATGTCCACACAGTTaGGCACCAGGGCGTGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: FQFPLFEWREDLNKSPYYRCPHS*APGRGG Trigger: ACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCG...ATAATATGGAGATTTGTTCAAGTCCTCCCTCCACTCAAAAAGAGGGAACTGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR TCA 90 bp | GACCTTTCCTCTGAAAAGCTAATTTATTCCAGTTCCCTCTTTTTGAGTGGAGGGCTCGGAGGCGATGGATaGGGCTTTCCAAACTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: DLSSEKLIYSSSLFLSGGLGGDG*GFPNCG Trigger: ACCACAGTTTGGAAAGCCTCATCCATCGCCTCCGAG...CCCTCCACTCAAAAAGAGGGAACTGGAATAAATTAGCTTTTCAGAGGAAAGGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR GCA 90 bp | GTGAAGGAAACAGTTGAAAGGAACCAGGTCTCGCCATCATCTTCTGGAAGGAAGACCAGAGGTTTGAGCTaGTCTGCAAAGTTCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: VKETVERNQVSPSSSGRKTRGLS*SAKFLM Trigger: CATGAGGAACTTTGCAGAGCAGCTCAAACCTCTGGT...CTTCCTTCCAGAAGATGATGGCGAGACCTGGTTCCTTTCAACTGTTTCCTTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR TCA 90 bp | GACCTTTCCTCTGAAAAGCTAATTTATTCCAGTTCCCTCTTTTTGAGTGGAGGGAGGAAGACCATCTCGTaGTCAAGGAAGGTCTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DLSSEKLIYSSSLFLSGGRKTIS*SRKVSG Trigger: GCCTGAGACCTTCCTTGATCACGAGATGGTCTTCCT...CCCTCCACTCAAAAAGAGGGAACTGGAATAAATTAGCTTTTCAGAGGAAAGGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CCA 90 bp | GAGTTCCAGGGCAGCCAAAGCAACACAGAGAAACCCTGTCTTGTATTGAAAAACGAAACAGGTGTCCTTTaGCGACAAACTCATGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: EFQGSQSNTEKPCLVLKNETGVL*RQTHGP Trigger: TGGACCATGAGTTTGTCGCCAAAGGACACCTGTTTC...GTTTTTCAATACAAGACAGGGTTTCTCTGTGTTGCTTTGGCTGCCCTGGAACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| 3UTR CAA 72 bp | TTATTCCAGTTCCCTCTTTTTGAGTGGAGGGAGGACTaGAACAAATCTCCATATTATCCTGGGTCTTTCATT | + |
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Preference number: 4 (lower is better) Translates to: LFQFPLFEWRED*NKSPYYPGSFI Trigger: AATGAAAGACCCAGGATAATATGGAGATTTGTTCAAGTCCTCCCTCCACTCAAAAAGAGGGAACTGGAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CCA 90 bp | GCTGTCCCAGGTATCGCAGATGCCAGGGTGCCCCTGCCCTGTCCATaGAGCGCCGGGCCCTTAGGACGAACGGGCTGGCCTGCTGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: AVPGIADARVPLPCP*SAGPLGRTGWPAGP Trigger: AGGGCCAGCAGGCCAGCCCGTTCGTCCTAAGGGCCCGGCGCTCCATGGACAGGGCAGGGGCACCCTGGCATCTGCGATACCTGGGACAGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CCA 90 bp | AGGTTCTCAGACGTGGCGATGTCCACACAGTTGCGCACCAGGGCGTaGCGGTTCTTGTCTCCCATTTCGGGCTGTCCCAGGTATCGCAGA | + |
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Preference number: 5 (lower is better) Translates to: RFSDVAMSTQLRTRA*RFLSPISGCPRYRR Trigger: TCTGCGATACCTGGGACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGCCACGTCTGAGAACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 90 bp | CAAACTCATGGTCCATGCGGAAGCCCATCTCCATCAGGAAGTCCGTaGGGTTCTCAGACGTGGCGATGTCCACACAGTTGCGCACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: QTHGPCGSPSPSGSP*GSQTWRCPHSCAPG Trigger: CCCTGGTGCGCAACTGTGTGGACATCGCCACGTCTGAGAACCTCACGGACTTCCTGATGGAGATGGGCTTCCGCATGGACCATGAGTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 90 bp | ACGAACGGGCTGGCCTGCTGGCCCTTAAGCAGGAAGACCATCTCGTaGTCAAGGAAGGTCTCAGGCTCCATGTTGTCACACAAACCTCGG | + |
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Preference number: 5 (lower is better) Translates to: TNGLACWPLSRKTIS*SRKVSGSMLSHKPR Trigger: CCGAGGTTTGTGTGACAACATGGAGCCTGAGACCTTCCTTGATCACGAGATGGTCTTCCTGCTTAAGGGCCAGCAGGCCAGCCCGTTCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102567.4 ENSMUST00000123604.2 |
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| CDS-3UTR CAA 90 bp | TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTCTCAGGCTCCATGTaGTCACACAAACCTCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SGGRGRWISEFEASLVYKVSGSM*SHKPRR Trigger: CCTCCGAGGTTTGTGTGACAACATGGAGCCTGAGAC...TTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 90 bp | AGGTCTCAGGCTCCATGTTGTCACACAAACCTCGGAGGCGATGGATaGGGCTTTCCAAACTGTGGTCCAAAACACTTCCCTGCAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: RSQAPCCHTNLGGDG*GFPNCGPKHFPAGG Trigger: ACCTCCTGCAGGGAAGTGTTTTGGACCACAGTTTGGAAAGCCTCATCCATCGCCTCCGAGGTTTGTGTGACAACATGGAGCCTGAGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102567.4 ENSMUST00000123604.2 |
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| CDS CCA 90 bp | TTCATGATGCCCTTCCGAAACAGGTGTCCTTTGGCGACAAACTCATaGTCCATGCGGAAGCCCATCTCCATCAGGAAGTCCGTGAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: FMMPFRNRCPLATNS*SMRKPISIRKSVRF Trigger: GAACCTCACGGACTTCCTGATGGAGATGGGCTTCCGCATGGACCATGAGTTTGTCGCCAAAGGACACCTGTTTCGGAAGGGCATCATGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CAA 90 bp | GACCTTTCCTCTGAAAAGCTAATTTATTCCAGTTCCCTCTTTTTGAGTGGAGGGGCGATGTCCACACAGTaGCGCACCAGGGCGTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: DLSSEKLIYSSSLFLSGGAMSTQ*RTRAWR Trigger: CCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGC...CCCTCCACTCAAAAAGAGGGAACTGGAATAAATTAGCTTTTCAGAGGAAAGGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS GCA 90 bp | CGACAACACTTAATTCCACAAGATAGGAGAGGGACAGGGCCTCGGTaGTGTCCGTGTTCCCTGGGACCAGGATTCGGAAAATCTTGTACA | + |
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Preference number: 5 (lower is better) Translates to: RQHLIPQDRRGTGPR*CPCSLGPGFGKSCT Trigger: TGTACAAGATTTTCCGAATCCTGGTCCCAGGGAACACGGACAGCACCGAGGCCCTGTCCCTCTCCTATCTTGTGGAATTAAGTGTTGTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS-3UTR CAA 90 bp | GAGTGGAGGGAGGACTTGAACAAATCTCCATATTATCCTGGGTCTTTCATTGGAAGGGCGTGGCGGTTCTaGTCTCCCATTTCGGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: EWREDLNKSPYYPGSFIGRAWRF*SPISGC Trigger: ACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCT...TCCAATGAAAGACCCAGGATAATATGGAGATTTGTTCAAGTCCTCCCTCCACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 90 bp | TCCCTGGGACCAGGATTCGGAAAATCTTGTACACCACAACCTTCATaGTGCCCTTCCGAAACAGGTGTCCTTTGGCGACAAACTCATGGT | + |
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Preference number: 5 (lower is better) Translates to: SLGPGFGKSCTPQPS*CPSETGVLWRQTHG Trigger: ACCATGAGTTTGTCGCCAAAGGACACCTGTTTCGGAAGGGCATCATGAAGGTTGTGGTGTACAAGATTTTCCGAATCCTGGTCCCAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CCA 72 bp | GACGTGGCGATGTCCACACAGTTGCGCACCAGGGCGTaGCGGTTCTTGTCTCCCATTTCGGGCTGTCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: DVAMSTQLRTRA*RFLSPISGCPR Trigger: CCTGGGACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGCCACGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 90 bp | GACGTGGCGATGTCCACACAGTTGCGCACCAGGGCGTGGCGGTTCTaGTCTCCCATTTCGGGCTGTCCCAGGTATCGCAGATGCCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: DVAMSTQLRTRAWRF*SPISGCPRYRRCQG Trigger: ACCCTGGCATCTGCGATACCTGGGACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGCCACGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 72 bp | ATGTCCACACAGTTGCGCACCAGGGCGTGGCGGTTCTaGTCTCCCATTTCGGGCTGTCCCAGGTATCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: MSTQLRTRAWRF*SPISGCPRYRR Trigger: TCTGCGATACCTGGGACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 72 bp | TCCGTGAGGTTCTCAGACGTGGCGATGTCCACACAGTaGCGCACCAGGGCGTGGCGGTTCTTGTCTCCCATT | + |
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Preference number: 6 (lower is better) Translates to: SVRFSDVAMSTQ*RTRAWRFLSPI Trigger: AATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGCCACGTCTGAGAACCTCACGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 90 bp | ATCAGGAAGTCCGTGAGGTTCTCAGACGTGGCGATGTCCACACAGTaGCGCACCAGGGCGTGGCGGTTCTTGTCTCCCATTTCGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: IRKSVRFSDVAMSTQ*RTRAWRFLSPISGC Trigger: ACAGCCCGAAATGGGAGACAAGAACCGCCACGCCCTGGTGCGCAACTGTGTGGACATCGCCACGTCTGAGAACCTCACGGACTTCCTGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 72 bp | CTGGCCTGCTGGCCCTTAAGCAGGAAGACCATCTCGTaGTCAAGGAAGGTCTCAGGCTCCATGTTGTCACAC | + |
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Preference number: 6 (lower is better) Translates to: LACWPLSRKTIS*SRKVSGSMLSH Trigger: GTGTGACAACATGGAGCCTGAGACCTTCCTTGATCACGAGATGGTCTTCCTGCTTAAGGGCCAGCAGGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102567.4 ENSMUST00000123604.2 |
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| CDS CCA 72 bp | CCCTTCCGAAACAGGTGTCCTTTGGCGACAAACTCATaGTCCATGCGGAAGCCCATCTCCATCAGGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: PFRNRCPLATNS*SMRKPISIRKS Trigger: GGACTTCCTGATGGAGATGGGCTTCCGCATGGACCATGAGTTTGTCGCCAAAGGACACCTGTTTCGGAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 90 bp | GCCTCGGTGCTGTCCGTGTTCCCTGGGACCAGGATTCGGAAAATCTaGTACACCACAACCTTCATGATGCCCTTCCGAAACAGGTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: ASVLSVFPGTRIRKI*YTTTFMMPFRNRCP Trigger: AGGACACCTGTTTCGGAAGGGCATCATGAAGGTTGTGGTGTACAAGATTTTCCGAATCCTGGTCCCAGGGAACACGGACAGCACCGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS GCA 72 bp | TTAATTCCACAAGATAGGAGAGGGACAGGGCCTCGGTaGTGTCCGTGTTCCCTGGGACCAGGATTCGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: LIPQDRRGTGPR*CPCSLGPGFGK Trigger: TTTTCCGAATCCTGGTCCCAGGGAACACGGACAGCACCGAGGCCCTGTCCCTCTCCTATCTTGTGGAATTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CCA 72 bp | AAACCTCGGAGGCGATGGATGAGGCTTTCCAAACTGTaGTCCAAAACACTTCCCTGCAGGAGGTACTCCATC | + |
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Preference number: 6 (lower is better) Translates to: KPRRRWMRLSKL*SKTLPCRRYSI Trigger: GATGGAGTACCTCCTGCAGGGAAGTGTTTTGGACCACAGTTTGGAAAGCCTCATCCATCGCCTCCGAGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102567.4 ENSMUST00000123604.2 |
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| CDS CAA 72 bp | ACAACCTTCATGATGCCCTTCCGAAACAGGTGTCCTTaGGCGACAAACTCATGGTCCATGCGGAAGCCCATC | + |
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Preference number: 6 (lower is better) Translates to: TTFMMPFRNRCP*ATNSWSMRKPI Trigger: GATGGGCTTCCGCATGGACCATGAGTTTGTCGCCAAAGGACACCTGTTTCGGAAGGGCATCATGAAGGTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 90 bp | TTGTACACCACAACCTTCATGATGCCCTTCCGAAACAGGTGTCCTTaGGCGACAAACTCATGGTCCATGCGGAAGCCCATCTCCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: LYTTTFMMPFRNRCP*ATNSWSMRKPISIR Trigger: CCTGATGGAGATGGGCTTCCGCATGGACCATGAGTTTGTCGCCAAAGGACACCTGTTTCGGAAGGGCATCATGAAGGTTGTGGTGTACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS TCA 72 bp | GCTCCATGTTGTCACACAAACCTCGGAGGCGATGGATaGGGCTTTCCAAACTGTGGTCCAAAACACTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: APCCHTNLGGDG*GFPNCGPKHFP Trigger: AGGGAAGTGTTTTGGACCACAGTTTGGAAAGCCTCATCCATCGCCTCCGAGGTTTGTGTGACAACATGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102567.4 ENSMUST00000123604.2 |
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| CDS GCA 72 bp | TCTGCAAAGTTCCTCATGTCATCAGAGACCATGTCCTaGCCAGCCGGGGCGACAACACTTAATTCCACAAGA | + |
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Preference number: 6 (lower is better) Translates to: SAKFLMSSETMS*PAGATTLNSTR Trigger: TCTTGTGGAATTAAGTGTTGTCGCCCCGGCTGGGCAGGACATGGTCTCTGATGACATGAGGAACTTTGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CAA 72 bp | CTGTCCGTGTTCCCTGGGACCAGGATTCGGAAAATCTaGTACACCACAACCTTCATGATGCCCTTCCGAAAC | + |
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Preference number: 6 (lower is better) Translates to: LSVFPGTRIRKI*YTTTFMMPFRN Trigger: GTTTCGGAAGGGCATCATGAAGGTTGTGGTGTACAAGATTTTCCGAATCCTGGTCCCAGGGAACACGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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| CDS CCA 72 bp | AACAGATCTTCCAACCGGAGAAGCACAGGATCCACCTaGAAAAGTCACACTTGTCCATACCCTGTTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: NRSSNRRSTGST*KSHTCPYPVCC Trigger: GCAGCAAACAGGGTATGGACAAGTGTGACTTTTCCAGGTGGATCCTGTGCTTCTCCGGTTGGAAGATCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123604.2 |
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| CDS TCA 72 bp | CCAGGATTCGGAAAATCTTGTACACCACAACCTTCATaGTGCCCTTCCGAAACAGGTGTCCTTTGGCGACAA | + |
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Preference number: 6 (lower is better) Translates to: PGFGKSCTPQPS*CPSETGVLWRQ Trigger: TTGTCGCCAAAGGACACCTGTTTCGGAAGGGCATCATGAAGGTTGTGGTGTACAAGATTTTCCGAATCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102567.4 |
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