RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MED16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000013833

Ensembl transcript IDs: ENSMUST00000105378.9, ENSMUST00000164705.8, ENSMUST00000165684.8, ENSMUST00000166964.8, ENSMUST00000170409.2

Found 264 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGCGTGCGCCACCACGCCCGGCCACTGTGGATCTTTTAAAGGATaGATACACAGCCCAGCTCCTTCACACTGGCTTGGATATGACCAT +
Preference number: 1 (lower is better)
Translates to: KACATTPGHCGSFKG*IHSPAPSHWLGYDH
Trigger: ATGGTCATATCCAAGCCAGTGTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCGTGGTGGCGCACGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGATTGGTGGGTACTTGTaGCTCAGTGAGCACAGCAAT +
Preference number: 2 (lower is better)
Translates to: TRLASNSEIHLPLPPECWIGGYL*LSEHSN
Trigger: ATTGCTGTGCTCACTGAGGCACAAGTACCCACCAAT...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR CAA 90 bp GATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACACTGGCTaGGATATGACCATGGGACTTCAGGCCCTAGAGATGCCGCATGTC +
Preference number: 2 (lower is better)
Translates to: DLLKDEYTAQLLHTG*DMTMGLQALEMPHV
Trigger: GACATGCGGCATCTCTAGGGCCTGAAGTCCCATGGTCATATCCAAGCCAGTGTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCAGACCCAGGGGCCATaGGTGGGTACTTGTGCCTCA +
Preference number: 3 (lower is better)
Translates to: TRLASNSEIHLPLPPECWQTQGP*VGTCAS
Trigger: TGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR TCA 72 bp GCCACCACGCCCGGCCACTGTGGATCTTTTAAAGGATaGATACACAGCCCAGCTCCTTCACACTGGCTTGGA +
Preference number: 3 (lower is better)
Translates to: ATTPGHCGSFKG*IHSPAPSHWLG
Trigger: TCCAAGCCAGTGTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCGTGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR GCA 72 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTaGCTCAGTGAGCACAGCAATGTCAATGTTCAGAGA +
Preference number: 3 (lower is better)
Translates to: EGADPGAIGGYL*LSEHSNVNVQR
Trigger: TCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR TCA 72 bp AGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTaGGCACAGCAATGTCAATGTTCAGAGACTGGTTGT +
Preference number: 3 (lower is better)
Translates to: RPRGHWWVLVPQ*AQQCQCSETGC
Trigger: ACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGGCCAGGGGCCCTGGTaGGGCCGTCCAGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSGQGPW*GRPAAG
Trigger: CCCTGCAGCTGGACGGCCTCACCAGGGCCCCTGGCC...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGCGGGTGACGCGCTGCTaGCATCTGCAGCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWRVTRC*HLQQPP
Trigger: TGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCG...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGGGTCCCCCTCCACCTaGCTGCCCACCGAGCTCTCC +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLGSPST*LPTELS
Trigger: GGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCC...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCAGGACAGGGCCACGATaGGGTCCCCCTCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSRTGPR*GPPPPG
Trigger: GCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCT...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCGCTGCAGGGCCAGCTTaGGCTCCAGTGGGTGGCCCA +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSAAGPA*APVGGP
Trigger: TGGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGC...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTCCCACTCCAGGCAGGTaGTGGCCTCGCTGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLPTPGR*WPRCGQ
Trigger: CTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGG...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTCCCCCTCCACCTGGCTaGCCACCGAGCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSPPPPG*PPSSPS
Trigger: GCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGG...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGGCACCATGTGCACGCTaGCATCCTGGAAGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWAPCAR*HPGRPA
Trigger: CGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGC...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGCTGCAGGGTGGAGGTaGTGCTGGGCAGAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQAAGWR*CWAEWA
Trigger: CGCCCACTCTGCCCAGCAGCACCTCCACCCTGCAGC...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGGCACAGGCTCTCCGTaGACGTCAGCACCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQGTGSP*TSAPAR
Trigger: GCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCC...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGGGCTGCTGGTCTGGCTaGACGCACACAGGAGCACCT +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWGCWSG*THTGAP
Trigger: AGGTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCC...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGCTGCAGGGCCAGCTTaGGCTCCAGTGGGTGGCCCA +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQAAGPA*APVGGP
Trigger: TGGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGC...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCTTAGCGGGGAGCCCTaGTTGGGCAGGCTGACCAGG +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWLSGEP*LGRLTR
Trigger: CCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCTAAG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCTGCTGCTGGGCAGAGTaGGCGCTCTGCCGAAGCGCA +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLCCWAE*ALCRSA
Trigger: TGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCA...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCTGGTCGATCTTGGGCTaGCCAGGGGCCCTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLWSILG*PGALVR
Trigger: CCTCACCAGGGCCCCTGGCCAGCCCAAGATCGACCA...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCCGCTGTGGCCAGAGCTaGCAGAGTGCACTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSRCGQS*QSALPR
Trigger: CCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCG...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCCTGGTTGGGCAGGCTaGCCAGGAGGTAGAGCACGA +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWPGWAG*PGGRAR
Trigger: TCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAGG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCGGGTGACGCGCTGCTaGCATCTGCAGCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSERVTRC*HLQQPP
Trigger: TGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCG...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGCACCATGTGCACGCTaGCATCCTGGAAGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWAPCAR*HPGRPA
Trigger: CGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGC...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCCAGGCTCTGCACCATaGCGGGCTGCACGTGTAGCA +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWPGSAP*RAARVA
Trigger: TGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCCCAGGCTCTGCACCATaGCGGGCTGCACGTGTAGCA +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLPGSAP*RAARVA
Trigger: TGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGG...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCAGGGGCTGTTTGGGCTaGAGGCGACTGACCAGGCCA +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSRGCLG*RRLTRP
Trigger: TGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCCT...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGAGGCCGTCCAGCTaGAGGGTGGAGGTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLVRPSS*RVEVLL
Trigger: CAGCAGCACCTCCACCCTGCAGCTGGACGGCCTCAC...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGCACAGCCACACCTGGTaGAGGCTTTGCACTCCTCGG +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWHSHTW*RLCTPR
Trigger: CCGAGGAGTGCAAAGCCTGCACCAGGTGTGGCTGTG...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCCAGCTTGGGCTCCAGTaGGTGGCCCAGGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLQLGLQ*VAQGWR
Trigger: TCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTG...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCTTAGCGGGGAGCCCTaGTTGGGCAGGCTGACCAGG +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQLSGEP*LGRLTR
Trigger: CCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCTAAG...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTTGGTCGATCTTGGGCTaGCCAGGGGCCCTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLWSILG*PGALVR
Trigger: CCTCACCAGGGCCCCTGGCCAGCCCAAGATCGACCA...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCGCTGTGGCCAGAGCTaGCAGAGTGCACTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQRCGQS*QSALPR
Trigger: CCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCG...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGAGGAAAAGCAGGTGCTaGAGGGCCAGCTTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWRKSRC*RASLGS
Trigger: GGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCT...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCAGGAAAAGCAGGTaGTGCAGGGCCAGCTTGGGC +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLSRKSR*CRASLG
Trigger: GCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCT...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCTGCACCATGCCGGGCTaGACGTGTAGCAGGATGTCC +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSCTMPG*TCSRMS
Trigger: GGACATCCTGCTACACGTGCAGCCCGGCATGGTGCA...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGCTGCAGGGTGGAGGTaGTGCTGGGCAGAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: FVDQAGLELRNPPASASRAAGWR*CWAEWA
Trigger: CGCCCACTCTGCCCAGCAGCACCTCCACCCTGCAGC...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCGTGATGGCCTCGCTGTaGCCAGAGCTGACAGAGTGC +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSVMASL*PELTEC
Trigger: GCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCAC...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGGCACAGGCTCTCCGTaGACGTCAGCACCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: FVDQAGLELRNPPASASRGTGSP*TSAPAR
Trigger: GCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCC...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGACCTGTCTTTGCGGTTaGGGTCGGTGGTGCAGCGCA +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWTCLCG*GRWCSA
Trigger: TGCGCTGCACCACCGACCCCAACCGCAAAGACAGGT...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGATTCCACCAGGCTGCTaGTCTGGCTGGACGCACACA +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWIPPGC*SGWTHT
Trigger: TGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAAT...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTTGGGCTCCAGTGGGTaGCCCAGGGATGGAGAGATT +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWLGSSG*PRDGEI
Trigger: AATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAA...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCTTGGGGACCAGCAGCTaGCTAGGCAGCAGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSLGTSS*LGSRQH
Trigger: ATGCTGCCTGCTGCCTAGCCAGCTGCTGGTCCCCAA...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGTGCCACCGAACAGCGTaGGGGACGGGGAGAACTTCA +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSECHRTA*GTGRTS
Trigger: TGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCA...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCATAGAACTTCACGGGTaGCGCGCTGCTGCCATCTGC +
Preference number: 4 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLIELHG*RAAAIC
Trigger: GCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTAT...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCATAGAACTTCACGGGTaGCGCGCTGCTGCCATCTGC +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSIELHG*RAAAIC
Trigger: GCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTAT...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCCGCGCTGCTGCCATCTaGAGCAGCCACCACAATGTT +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSRAAAI*SSHHNV
Trigger: AACATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCG...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGAGCAGGAAAAGCAGGTaGTGCAGGGCCAGCTTGGGC +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQSRKSR*CRASLG
Trigger: GCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCT...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGTGCACCATGCCGGGCTaGACGTGTAGCAGGATGTCC +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSECTMPG*TCSRMS
Trigger: GGACATCCTGCTACACGTGCAGCCCGGCATGGTGCA...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCGAGTGTACTCCTCATaGAGCCGCTCCACCAGGCTC +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQRVYSS*SRSTRL
Trigger: GAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCG...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGACCTGTCTTTGCGGTTaGGGTCGGTGGTGCAGCGCA +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSETCLCG*GRWCSA
Trigger: TGCGCTGCACCACCGACCCCAACCGCAAAGACAGGT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCATTCCACCAGGCTGCTaGTCTGGCTGGACGCACACA +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSIPPGC*SGWTHT
Trigger: TGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAAT...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGTTGGGCTCCAGTGGGTaGCCCAGGGATGGAGAGATT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWLGSSG*PRDGEI
Trigger: AATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAA...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGTTGGGGACCAGCAGCTaGCTAGGCAGCAGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSELGTSS*LGSRQH
Trigger: ATGCTGCCTGCTGCCTAGCCAGCTGCTGGTCCCCAA...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGTGTAGCCTCCGGAGGTaGTCGATCTTGGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSECSLRR*SILGWP
Trigger: TGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACA...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGCAGCGCATAAACAGTaGGGGCAGGATCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLAAHKQ*GQDLRV
Trigger: GACACGGAGATCCTGCCCTCACTGTTTATGCGCTGC...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGTCAGTGTTGGTGAGTaGGATGGGCAGTTTCGGCAG +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWVSVGE*DGQFRQ
Trigger: CTGCCGAAACTGCCCATCTCACTCACCAACACTGAC...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTCTTGTCAGGGGTGTTaGGGAAGTGTGGGCGCAGCA +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQSCQGC*GSVGAA
Trigger: TGCTGCGCCCACACTTCCTCAACACCCCTGACAAGA...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGGCAGAGTGGGCGCTCTaGCGAAGCGCAGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWAEWAL*RSAGAG
Trigger: CCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGC...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACGCAGGGTGGAGGTGCTaGTGGGCAGAGTGGGCGCTC +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHAGWRC*WAEWAL
Trigger: GAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGC...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTCAGCTGTTGGCCAGGTaGTCAGCCATGCTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLQLLAR*SAMLQH
Trigger: ATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTG...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGGGGTCCCCCTCCACCTaGCTGCCCACCGAGCTCTCC +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWGSPST*LPTELS
Trigger: GGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCC...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGAATCCAACCCTCCATTaGCTTGCCACCGAACAGCGT +
Preference number: 4 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWNPTLH*LATEQR
Trigger: ACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATT...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTTGTCAGGGGTGTTaGGGAAGTGTGGGCGCAGCA +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSSCQGC*GSVGAA
Trigger: TGCTGCGCCCACACTTCCTCAACACCCCTGACAAGA...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGAGATCCACAGTTTGGTaGGCAGTCGGAAGAGCAGGG +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSERSTVW*AVGRAG
Trigger: CCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCACACAGGCAATTCTTaGTCCACCGCTGTTCCCACT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIHLPLPPECWHTGNS*STAVPT
Trigger: AGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGCCCCCTCCACCTGGCTaGCCACCGAGCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLPPPPG*PPSSPS
Trigger: GCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGG...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTCCAGACTTCTCCACATaGAGGGCCAGCTTTACACCG +
Preference number: 4 (lower is better)
Translates to: EMPHVPRRGRPRGHWWVLPDFST*RASFTP
Trigger: CGGTGTAAAGCTGGCCCTGCATGTGGAGAAGTCTGG...AAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGACACACGAGCCACTGTaGAGGGTGACAGCTTGCACA +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSETHEPL*RVTACT
Trigger: TGTGCAAGCTGTCACCCTGCACAGTGGCTCGTGTGT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACAGCCGGGACCCTGACTaGTCCCACTCCAGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHSRDPD*SHSRQV
Trigger: CACCTGCCTGGAGTGGGACCAGTCAGGGTCCCGGCT...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGATGTAGCCTCCGGAGGTaGTCGATCTTGGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: FVDQAGLELRNPPASASRCSLRR*SILGWP
Trigger: TGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACA...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTCCCACTCCAGGCAGGTaGTGGCCTCGCTGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESPTPGR*WPRCGQ
Trigger: CTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGG...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR TCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAGGCCAGGGGCCCTGGTaGGGCCGTCCAGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIGQGPW*GRPAAG
Trigger: CCCTGCAGCTGGACGGCCTCACCAGGGCCCCTGGCC...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACACAGGCAATTCTTaGTCCACCGCTGTTCCCACT +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSEHTGNS*STAVPT
Trigger: AGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTG...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACGTGGACGTCAGCACCTaGCCGCTGGGCTTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHVDVST*PLGFRR
Trigger: CCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCAC...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCAACTGCTGCAGCGCCTaGAAAGTGTTCATGTCAAGG +
Preference number: 4 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSNCCSA*KVFMSR
Trigger: CCTTGACATGAACACTTTGCAGGCGCTGCAGCAGTT...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGGCAGGGTGGAGGTGCTaGTGGGCAGAGTGGGCGCTC +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLAGWRC*WAEWAL
Trigger: GAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGC...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACACCAGGCTGCTGGTCTaGCTGGACGCACACAGGAGC +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHTRLLV*LDAHRS
Trigger: GCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGT...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCCATGCTCCAGCATTTaGTCTGTCCATCAGCATCAG +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQPCSSI*SVHQHQ
Trigger: CTGATGCTGATGGACAGATCAAATGCTGGAGCATGG...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGCCTGGTTGGGCAGGCTaGCCAGGAGGTAGAGCACGA +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWPGWAG*PGGRAR
Trigger: TCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAGG...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAAGATCCACAGTTTGGTaGGCAGTCGGAAGAGCAGGG +
Preference number: 4 (lower is better)
Translates to: FVDQAGLELRNPPASASRRSTVW*AVGRAG
Trigger: CCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCT...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGAACTGCTGCAGCGCCTaGAAAGTGTTCATGTCAAGG +
Preference number: 4 (lower is better)
Translates to: SLEGADPGAIGGYLCLSENCCSA*KVFMSR
Trigger: CCTTGACATGAACACTTTGCAGGCGCTGCAGCAGTT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGAGGGGCTGTTTGGGCTaGAGGCGACTGACCAGGCCA +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWRGCLG*RRLTRP
Trigger: TGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCCT...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTTGCTGCTGGGCAGAGTaGGCGCTCTGCCGAAGCGCA +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESCCWAE*ALCRSA
Trigger: TGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCA...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR CCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGAGGTGGTCGATCTTaGGCTGGCCAGGGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAGGGRS*AGQGPW
Trigger: CCAGGGCCCCTGGCCAGCCCAAGATCGACCACCTCC...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGGTGGACGTCAGCACCTaGCCGCTGGGCTTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLVDVST*PLGFRR
Trigger: CCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCAC...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGCATAGCCGGTCACCATaGAGTATTCCAGCAGGAAAA +
Preference number: 4 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQHSRSP*SIPAGK
Trigger: TTTTCCTGCTGGAATACTGCATGGTGACCGGCTATG...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAGCAGAGTGGGCGCTCTaGCGAAGCGCAGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIAEWAL*RSAGAG
Trigger: CCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGC...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACGGCAGTACGTGCTCTTaGCCCACTTCTCCCATTCGC +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHGSTCS*PTSPIR
Trigger: GCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCC...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGTCAGCACCTGCCCGCTaGGCTTCAGAAGGGACACAG +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWSAPAR*ASEGTQ
Trigger: CTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGA...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGGGCTGCTGGTCTGGCTaGACGCACACAGGAGCACCT +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLGCWSG*THTGAP
Trigger: AGGTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCC...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTCAGCTTGGGCTCCAGTaGGTGGCCCAGGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESQLGLQ*VAQGWR
Trigger: TCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTG...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
3UTR CAA 72 bp CTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTaGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAG +
Preference number: 4 (lower is better)
Translates to: LEGADPGAIGGY*CLSEHSNVNVQ
Trigger: CTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGCCAGAGCTGACAGAGTaGACTTCCCAGGGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWPELTE*TSQGCS
Trigger: GGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGG...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGCGCGCTGCTGCCATCTaGAGCAGCCACCACAATGTT +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWRAAAI*SSHHNV
Trigger: AACATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCG...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTCGGGGAACCTGTCTTTaGGGTTGGGGTCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQARGTCL*GWGRWC
Trigger: GCACCACCGACCCCAACCGCAAAGACAGGTTCCCCG...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGAGGAAAAGCAGGTGCTaGAGGGCCAGCTTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLRKSRC*RASLGS
Trigger: GGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCT...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGCGAGTGTACTCCTCATaGAGCCGCTCCACCAGGCTC +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLRVYSS*SRSTRL
Trigger: GAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCG...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTGTGATGGCCTCGCTGTaGCCAGAGCTGACAGAGTGC +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESVMASL*PELTEC
Trigger: GCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCAC...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR CCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAAGGACAGGGCCACGATaGGGTCCCCCTCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIRTGPR*GPPPPG
Trigger: GCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCT...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTGGCCAGGATCCGAGTaGAGAGGACCTGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLWPGSE*RGPVAG
Trigger: CCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCA...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAGTGAGGCCGTCCAGCTaGAGGGTGGAGGTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIVRPSS*RVEVLL
Trigger: CAGCAGCACCTCCACCCTGCAGCTGGACGGCCTCAC...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTCAGCTGTTGGCCAGGTaGTCAGCCATGCTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESQLLAR*SAMLQH
Trigger: ATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTG...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR CCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTTGGCCAGGATCCGAGTaGAGAGGACCTGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAWPGSE*RGPVAG
Trigger: CCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCA...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACACAGTGAAGCCTTCATaGCCAGGATCCGAGTGGAGA +
Preference number: 4 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHTVKPS*PGSEWR
Trigger: TCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGT...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR TCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGCAGCGCATAAACAGTaGGGGCAGGATCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAAAHKQ*GQDLRV
Trigger: GACACGGAGATCCTGCCCTCACTGTTTATGCGCTGC...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTCCAGAGCTGACAGAGTaGACTTCCCAGGGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAPELTE*TSQGCS
Trigger: GGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGG...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTAGCTTTACACCGTTGTaGAGCCAGGACAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQASFTPL*SQDRAT
Trigger: CGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGCT...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGCCAGACTTCTCCACATaGAGGGCCAGCTTTACACCG +
Preference number: 4 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLPDFST*RASFTP
Trigger: CGGTGTAAAGCTGGCCCTGCATGTGGAGAAGTCTGG...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGGGGAACCTGTCTTTaGGGTTGGGGTCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIRGTCL*GWGRWC
Trigger: GCACCACCGACCCCAACCGCAAAGACAGGTTCCCCG...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGCAGTACGTGCTCTTaGCCCACTTCTCCCATTCGC +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAGSTCS*PTSPIR
Trigger: GCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCC...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACACAGCCACACCTGGTaGAGGCTTTGCACTCCTCGG +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIHSHTW*RLCTPR
Trigger: CCGAGGAGTGCAAAGCCTGCACCAGGTGTGGCTGTG...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATATCAGCACCTGCCCGCTaGGCTTCAGAAGGGACACAG +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYISAPAR*ASEGTQ
Trigger: CTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGA...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
3UTR CAA 72 bp AAGGATGAATACACAGCCCAGCTCCTTCACACTGGCTaGGATATGACCATGGGACTTCAGGCCCTAGAGATG +
Preference number: 4 (lower is better)
Translates to: KDEYTAQLLHTG*DMTMGLQALEM
Trigger: CATCTCTAGGGCCTGAAGTCCCATGGTCATATCCAAGCCAGTGTGAAGGAGCTGGGCTGTGTATTCATCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGGTGGGCTGTGGGAAGTCCAGGACAGCTaGATGGCTTTAAAGTGTACG +
Preference number: 4 (lower is better)
Translates to: SNVNVQRLVVHTQAGGLWEVQDS*MALKCT
Trigger: CGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTC...CCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTAATCCAACCCTCCATTaGCTTGCCACCGAACAGCGT +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQANPTLH*LATEQR
Trigger: ACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATT...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTCATAGCCGGTCACCATaGAGTATTCCAGCAGGAAAA +
Preference number: 4 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESHSRSP*SIPAGK
Trigger: TTTTCCTGCTGGAATACTGCATGGTGACCGGCTATG...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR GCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAACACACGAGCCACTGTaGAGGGTGACAGCTTGCACA +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYITHEPL*RVTACT
Trigger: TGTGCAAGCTGTCACCCTGCACAGTGGCTCGTGTGT...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR GCA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGAAGTCCAGGACAGCTaGATGGCTTTAAAGTGTACG +
Preference number: 4 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAEVQDS*MALKCT
Trigger: CGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTC...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CCA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAACAGTGAAGCCTTCATaGCCAGGATCCGAGTGGAGA +
Preference number: 4 (lower is better)
Translates to: TCASVSTAMSMFRDWLYITVKPS*PGSEWR
Trigger: TCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGT...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp CACATAGGCCAGGTCCATCATACCCACCGCACCCAGCACGGTCCCTaGCTGTCCGCCCCGGGCGCCCAGTCGGCCCGGCGGCCGCGGTCC +
Preference number: 5 (lower is better)
Translates to: HIGQVHHTHRTQHGP*LSAPGAQSARRPRS
Trigger: GGACCGCGGCCGCCGGGCCGACTGGGCGCCCGGGGCGGACAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS CCA 90 bp CACATAGGCCAGGTCCATCATACCCACCGCACCCAGCACGGTCCCTaGCTCCTGTCCGCCCCGGGCGCCCAGTCGGCCCGGCGGCCGCGG +
Preference number: 5 (lower is better)
Translates to: HIGQVHHTHRTQHGP*LLSAPGAQSARRPR
Trigger: CCGCGGCCGCCGGGCCGACTGGGCGCCCGGGGCGGACAGGAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165684.8
CDS GCA 90 bp AGAGTGGGCGCTCTGCCGAAGCGCAGGCGCAGGGGCTGTTTGGGCTaGAGGCGACTGACCAGGCCATCACTGGCGGGAAGCCAGTCCAAG +
Preference number: 5 (lower is better)
Translates to: RVGALPKRRRRGCLG*RRLTRPSLAGSQSK
Trigger: CTTGGACTGGCTTCCCGCCAGTGATGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp AACTCTCGCAGCATGCCCAGGGAGGTACCATCTCGGAGGAAGCTGTaGCCCGGCCTTAGCGGGGAGCCCTGGTTGGGCAGGCTGACCAGG +
Preference number: 5 (lower is better)
Translates to: NSRSMPREVPSRRKL*PGLSGEPWLGRLTR
Trigger: CCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCTAAGGCCGGGCCACAGCTTCCTCCGAGATGGTACCTCCCTGGGCATGCTGCGAGAGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCCGGAGGTGGTCGATCTaGGGCTGGCCAGGGGCCCTG +
Preference number: 5 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSRRWSI*GWPGAL
Trigger: CAGGGCCCCTGGCCAGCCCAAGATCGACCACCTCCG...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp GAGAGGACCTGTTGCAGGGCGGGCTTCTGGCGAGTGTACTCCTCATaGAGCCGCTCCACCAGGCTCTGCACCATGCCGGGCTGCACGTGT +
Preference number: 5 (lower is better)
Translates to: ERTCCRAGFWRVYSS*SRSTRLCTMPGCTC
Trigger: ACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAGGTCCTCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGAGCGGGGAGCCCTGGTaGGGCAGGCTGACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SLEGADPGAIGGYLCLSESGEPW*GRLTRR
Trigger: CCTCCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp GAGGCACCAGACTTCTCCACATGCAGGGCCAGCTTTACACCGTTGTaGAGCCAGGACAGGGCCACGATGGGGTCCCCCTCCACCTGGCTG +
Preference number: 5 (lower is better)
Translates to: EAPDFSTCRASFTPL*SQDRATMGSPSTWL
Trigger: CAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGCTGGCCCTGCATGTGGAGAAGTCTGGTGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS GCA 90 bp ACTCTACCACGCAGCCGGCACAGGCTCTCCGTGGACGTCAGCACCTaGCCGCTGGGCTTCAGAAGGGACACAGTGACCAGGCCACTGACT +
Preference number: 5 (lower is better)
Translates to: TLPRSRHRLSVDVST*PLGFRRDTVTRPLT
Trigger: AGTCAGTGGCCTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGCTGCGTGGTAGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS GCA 90 bp GGCGAGTGTACTCCTCATGCAGCCGCTCCACCAGGCTCTGCACCATaGCGGGCTGCACGTGTAGCAGGATGTCCCACCAGTCATAGCCGG +
Preference number: 5 (lower is better)
Translates to: GECTPHAAAPPGSAP*RAARVAGCPTSHSR
Trigger: CCGGCTATGACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp CGGGACCCTGACTGGTCCCACTCCAGGCAGGTGATGGCCTCGCTGTaGCCAGAGCTGACAGAGTGCACTTCCCAGGGGTGTTCCGTGTCT +
Preference number: 5 (lower is better)
Translates to: RDPDWSHSRQVMASL*PELTECTSQGCSVS
Trigger: AGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAGGGTCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS-3UTR CAA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCGCGGGGAACCTGTCTTaGCGGTTGGGGTCGGTGGTG +
Preference number: 5 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSAGNLS*RLGSVV
Trigger: CACCACCGACCCCAACCGCAAAGACAGGTTCCCCGC...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTGCTGCAGGGCCAGCTaGGGCTCCAGTGGGTGGCCC +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSCCRAS*GSSGWP
Trigger: GGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCA...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTAGCGGGGAGCCCTGGTaGGGCAGGCTGACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSSGEPW*GRLTRR
Trigger: CCTCCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCT...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp TCCTGCAGGACCAGGCACAAGCCAGGGGCAGCGACGGGCAGTACGTaGTCTTGGCCCACTTCTCCCATTCGCACACATAGGCCAGGTCCA +
Preference number: 5 (lower is better)
Translates to: SCRTRHKPGAATGST*SWPTSPIRTHRPGP
Trigger: TGGACCTGGCCTATGTGTGCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCTTGTGCCTGGTCCTGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS GCA 90 bp GGCTTCTGGCGAGTGTACTCCTCATGCAGCCGCTCCACCAGGCTCTaGACCATGCCGGGCTGCACGTGTAGCAGGATGTCCCACCAGTCA +
Preference number: 5 (lower is better)
Translates to: GFWRVYSSCSRSTRL*TMPGCTCSRMSHQS
Trigger: TGACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGGGGCAGTACGTGCTCTaGGCCCACTTCTCCCATTCG +
Preference number: 5 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWGQYVL*AHFSHS
Trigger: CGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCC...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGAACCTGTCTTTGCGGTaGGGGTCGGTGGTGCAGCGC +
Preference number: 5 (lower is better)
Translates to: TRLASNSEIHLPLPPECWNLSLR*GSVVQR
Trigger: GCGCTGCACCACCGACCCCAACCGCAAAGACAGGTT...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGGCGGGGAACCTGTCTTaGCGGTTGGGGTCGGTGGTG +
Preference number: 5 (lower is better)
Translates to: SLEGADPGAIGGYLCLSEAGNLS*RLGSVV
Trigger: CACCACCGACCCCAACCGCAAAGACAGGTTCCCCGC...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCTCTCGCGCCAGGAACTaGAGGTGTGTGATGGCGGGG +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLSRARN*RCVMAG
Trigger: CCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGA...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGACGGAGGTGGTCGATCTaGGGCTGGCCAGGGGCCCTG +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRRRWSI*GWPGAL
Trigger: CAGGGCCCCTGGCCAGCCCAAGATCGACCACCTCCG...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp CCTCTTTCCGAAGGGACCAGCATTCCACCAGGCTGCTGGTCTGGCTaGACGCACACAGGAGCACCTGCTCAGACATGTCTCGCGCCAGGA +
Preference number: 5 (lower is better)
Translates to: PLSEGTSIPPGCWSG*THTGAPAQTCLAPG
Trigger: TCCTGGCGCGAGACATGTCTGAGCAGGTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAATGCTGGTCCCTTCGGAAAGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp GGGTGGCCCAGGGATGGAGAGATTCGCAGCATGCTGAGCTTCCCATaGTTATCGATGCCCACGAGGGCCAGCGAAGTCCAGGACAGCTGC +
Preference number: 5 (lower is better)
Translates to: GWPRDGEIRSMLSFP*LSMPTRASEVQDSC
Trigger: GCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGGGAAGCTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCAACCCTCCATTGGCTaGCCACCGAACAGCGTGAGG +
Preference number: 5 (lower is better)
Translates to: TRLASNSEIHLPLPPECWQPSIG*PPNSVR
Trigger: CCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCCTCTTGTCAGGGGTGTaGAGGAAGTGTGGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSLLSGV*RKCGRS
Trigger: GCTGCGCCCACACTTCCTCAACACCCCTGACAAGAG...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCGGAAGCCAGTCCAAGTaGGGGACCAGCAGCTGGCTA +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLGSQSK*GTSSWL
Trigger: TAGCCAGCTGCTGGTCCCCAACTTGGACTGGCTTCC...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp CCATGGTTATCGATGCCCACGAGGGCCAGCGAAGTCCAGGACAGCTaGATGGCTTTAAAGTGTACGGCAGGGCATGTGGTGCGTGGGCGC +
Preference number: 5 (lower is better)
Translates to: PWLSMPTRASEVQDS*MALKCTAGHVVRGR
Trigger: GCGCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGAGCTCTCCCAGCTGTaGGCCAGGTGGTCAGCCATG +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSELSQL*ARWSAM
Trigger: CATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTC...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGACACGGTCCAGGTCATaGGTGGCCGACAGGATTCGC +
Preference number: 5 (lower is better)
Translates to: SLEGADPGAIGGYLCLSETRSRS*VADRIR
Trigger: GCGAATCCTGTCGGCCACCAATGACCTGGACCGTGT...CTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 90 bp GAACCTGTCTTTGCGGTTGGGGTCGGTGGTGCAGCGCATAAACAGTaGGGGCAGGATCTCCGTGTCGATGCGGCACTTCTCGCTGACCAC +
Preference number: 5 (lower is better)
Translates to: EPVFAVGVGGAAHKQ*GQDLRVDAALLADH
Trigger: GTGGTCAGCGAGAAGTGCCGCATCGACACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp AGGGTGACAGCTTGCACAGTGAAGCCTTCATGGCCAGGATCCGAGTaGAGAGGACCTGTTGCAGGGCGGGCTTCTGGCGAGTGTACTCCT +
Preference number: 5 (lower is better)
Translates to: RVTACTVKPSWPGSE*RGPVAGRASGECTP
Trigger: AGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTGTCACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp AGGCCATCACTGGCGGGAAGCCAGTCCAAGTTGGGGACCAGCAGCTaGCTAGGCAGCAGGCAGCATTCATCCACCAAACCCTCATCTGGT +
Preference number: 5 (lower is better)
Translates to: RPSLAGSQSKLGTSS*LGSRQHSSTKPSSG
Trigger: ACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCAGCTGCTGGTCCCCAACTTGGACTGGCTTCCCGCCAGTGATGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAAACCTGTCTTTGCGGTaGGGGTCGGTGGTGCAGCGC +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRNLSLR*GSVVQR
Trigger: GCGCTGCACCACCGACCCCAACCGCAAAGACAGGTT...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGATCTCGCGCCAGGAACTaGAGGTGTGTGATGGCGGGG +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRSRARN*RCVMAG
Trigger: CCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGA...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGAGGATCATGGGCTGTTaGTCACCAACCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: TRLASNSEIHLPLPPECWRIMGC*SPTTGE
Trigger: CTCGCCTGTGGTTGGTGACAAACAGCCCATGATCCT...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGATCATGGGCTGTTaGTCACCAACCACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLRIMGC*SPTTGE
Trigger: CTCGCCTGTGGTTGGTGACAAACAGCCCATGATCCT...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCGTGTCACTGGCCACCTaGAGGTCAGTGTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSVSLAT*RSVLVS
Trigger: ACTCACCAACACTGACCTCAAGGTGGCCAGTGACAC...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCGTGCAGGGTGACAGCTaGCACAGTGAAGCCTTCATG +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLVQGDS*HSEAFM
Trigger: CATGAAGGCTTCACTGTGCAAGCTGTCACCCTGCAC...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGACGGTCCCCAGGGCTCTaGTCAGGGGTGTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRRSPGL*SGVLRK
Trigger: CTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCG...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGCAGCAGATCCACAGTTaGGTGAGCAGTCGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: TRLASNSEIHLPLPPECWQQIHS*VSSRKS
Trigger: GCTCTTCCGACTGCTCACCAAACTGTGGATCTGCTG...CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCCAGCAGATCCACAGTTaGGTGAGCAGTCGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLQQIHS*VSSRKS
Trigger: GCTCTTCCGACTGCTCACCAAACTGTGGATCTGCTG...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 90 bp TGTAGACGGGCAGACAGCTGGGCTTCAGCAGGCCCCAGATTCGGATaGCAACCATCAACTCTCGCAGCATGCCCAGGGAGGTACCATCTC +
Preference number: 5 (lower is better)
Translates to: CRRADSWASAGPRFG*QPSTLAACPGRYHL
Trigger: GAGATGGTACCTCCCTGGGCATGCTGCGAGAGTTGATGGTTGTCATCCGAATCTGGGGCCTGCTGAAGCCCAGCTGTCTGCCCGTCTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp GCTGGGCTTCAGAAGGGACACAGTGACCAGGCCACTGACTGTCACTaGAATCCAACCCTCCATTGGCTTGCCACCGAACAGCGTGAGGGA +
Preference number: 5 (lower is better)
Translates to: AGLQKGHSDQATDCH*NPTLHWLATEQREG
Trigger: TCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTGGTCACTGTGTCCCTTCTGAAGCCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS CCA 90 bp CACAGTGACCAGGCCACTGACTGTCACTGCAATCCAACCCTCCATTaGCTTGCCACCGAACAGCGTGAGGGACGGGGAGAACTTCACACG +
Preference number: 5 (lower is better)
Translates to: HSDQATDCHCNPTLH*LATEQREGRGELHT
Trigger: CGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTGGTCACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGGCCATGCTCCAGCATTaGATCTGTCCATCAGCATCA +
Preference number: 5 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWAMLQH*ICPSAS
Trigger: TGATGCTGATGGACAGATCAAATGCTGGAGCATGGC...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGACAACCCTCCATTGGCTaGCCACCGAACAGCGTGAGG +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRQPSIG*PPNSVR
Trigger: CCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTG...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAACACGGTCCAGGTCATaGGTGGCCGACAGGATTCGC +
Preference number: 5 (lower is better)
Translates to: FVDQAGLELRNPPASASRTRSRS*VADRIR
Trigger: GCGAATCCTGTCGGCCACCAATGACCTGGACCGTGT...TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCACCTTGAGGTCAGTGTaGGTGAGTGAGATGGGCAGT +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLTLRSV*VSEMGS
Trigger: ACTGCCCATCTCACTCACCAACACTGACCTCAAGGT...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGTGTCACTGGCCACCTaGAGGTCAGTGTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: HVPRRGRPRGHWWVLVPQVSLAT*RSVLVS
Trigger: ACTCACCAACACTGACCTCAAGGTGGCCAGTGACAC...CTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCAACATCGGTGATCTaGGCGCAGATCTCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSSTSVI*AQISAR
Trigger: CCTGGCCGAGATCTGCGCCAAGATCACCGATGTTGA...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CAGGCCCTAGAGATGCCGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGACTGTGTCACAGCGGTaGTCTTGTTGGGAGACTTCA +
Preference number: 5 (lower is better)
Translates to: QALEMPHVPRRGRPRGHWTVSQR*SCWETS
Trigger: TGAAGTCTCCCAACAAGACAACCGCTGTGACACAGT...CCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 90 bp ATAGAACTGGGTGTCACTGGCCACCTTGAGGTCAGTGTTGGTGAGTaGGATGGGCAGTTTCGGCAGTGCCACCGCGGATACACGGTCCAG +
Preference number: 5 (lower is better)
Translates to: IELGVTGHLEVSVGE*DGQFRQCHRGYTVQ
Trigger: CTGGACCGTGTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACCCAGTTCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 90 bp CACTCCAGGCAGGTGATGGCCTCGCTGTGGCCAGAGCTGACAGAGTaGACTTCCCAGGGGTGTTCCGTGTCTAGGATATGGATCATGTGT +
Preference number: 5 (lower is better)
Translates to: HSRQVMASLWPELTE*TSQGCSVSRIWIMC
Trigger: ACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS CCA 90 bp CAGCTGGCTAGGCAGCAGGCAGCATTCATCCACCAAACCCTCATCTaGTTCACTGGCTGCGCCCTCATCACGGCAGCAGATCCACAGTTT +
Preference number: 5 (lower is better)
Translates to: QLARQQAAFIHQTLI*FTGCALITAADPQF
Trigger: AAACTGTGGATCTGCTGCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTCCACACAGGCAATTCTaGATCCACCGCTGTTCCCAC +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSTCLCLPSPHRQF*IHRCSH
Trigger: GTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGG...ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 90 bp TGGCTTGCCACCGAACAGCGTGAGGGACGGGGAGAACTTCACACGTaGGAACTTCTCTCCGAAGCTAGAGGCACCAGACTTCTCCACATG +
Preference number: 5 (lower is better)
Translates to: WLATEQREGRGELHT*ELLSEARGTRLLHM
Trigger: CATGTGGAGAAGTCTGGTGCCTCTAGCTTCGGAGAGAAGTTCTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS TCA 90 bp CTGTCACTGCAATCCAACCCTCCATTGGCTTGCCACCGAACAGCGTaGGGGACGGGGAGAACTTCACACGTGAGAACTTCTCTCCGAAGC +
Preference number: 5 (lower is better)
Translates to: LSLQSNPPLACHRTA*GTGRTSHVRTSLRS
Trigger: GCTTCGGAGAGAAGTTCTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS TCA 90 bp CGGATACACGGTCCAGGTCATTGGTGGCCGACAGGATTCGCCACTTaGGGATCATGGGCTGTTTGTCACCAACCACAGGCGAGATCTGCT +
Preference number: 5 (lower is better)
Translates to: RIHGPGHWWPTGFAT*GSWAVCHQPQARSA
Trigger: AGCAGATCTCGCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATATGCTGCAGGGCCAGCTaGGGCTCCAGTGGGTGGCCC +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYICCRAS*GSSGWP
Trigger: GGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCA...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCATGTCCCTAGAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGGTTGATCATGACTTaGTCGATGTCAACATCGGTG +
Preference number: 5 (lower is better)
Translates to: RMSLEGADPGAIGGYLCLRLIMT*SMSTSV
Trigger: CACCGATGTTGACATCGACAAAGTCATGATCAACCT...GAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGCTCTTGTCAGGGGTGTaGAGGAAGTGTGGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLLLSGV*RKCGRS
Trigger: GCTGCGCCCACACTTCCTCAACACCCCTGACAAGAG...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GAAGGGGCAGACCCAGGGGCCATTGGTGGGTACTTGTGCCTCAGTGAGCACAGCTCTTCAGTCTTCAGGTaGATCATGACTTTGTCGATG +
Preference number: 5 (lower is better)
Translates to: EGADPGAIGGYLCLSEHSSSVFR*IMTLSM
Trigger: CATCGACAAAGTCATGATCAACCTGAAGACTGAAGA...GCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACCCACACAGGCAATTCTaGATCCACCGCTGTTCCCAC +
Preference number: 5 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHPHRQF*IHRCSH
Trigger: GTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGG...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp GAGCTGACAGAGTGCACTTCCCAGGGGTGTTCCGTGTCTAGGATATaGATCATGTGTGTCAGATCCTGGTCATCATTGCGTAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: ELTECTSQGCSVSRI*IMCVRSWSSLRRSV
Trigger: CACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGGTCCCCAGGGCTCTaGTCAGGGGTGTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIRSPGL*SGVLRK
Trigger: CTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCG...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 90 bp CAGGGGTGTTCCGTGTCTAGGATATGGATCATGTGTGTCAGATCCTaGTCATCATTGCGTAGGTCTGTGGTGAAGGCAATGAGGTTCCTG +
Preference number: 5 (lower is better)
Translates to: QGCSVSRIWIMCVRS*SSLRRSVVKAMRFL
Trigger: CAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAGGGCAGTACGTGCTCTaGGCCCACTTCTCCCATTCG +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIGQYVL*AHFSHS
Trigger: CGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCC...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACATCTGCTGGAAGATATaGTTCACAGGAAGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHICWKI*FTGRPS
Trigger: AGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGAT...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGACCTTGAGGTCAGTGTaGGTGAGTGAGATGGGCAGT +
Preference number: 5 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLTLRSV*VSEMGS
Trigger: ACTGCCCATCTCACTCACCAACACTGACCTCAAGGT...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAGGAAGCCAGTCCAAGTaGGGGACCAGCAGCTGGCTA +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYIGSQSK*GTSSWL
Trigger: TAGCCAGCTGCTGGTCCCCAACTTGGACTGGCTTCC...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATATCAACATCGGTGATCTaGGCGCAGATCTCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYISTSVI*AQISAR
Trigger: CCTGGCCGAGATCTGCGCCAAGATCACCGATGTTGA...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATACGCAGGCTGCCATGCTCCAGCATTaGATCTGTCCATCAGCATCA +
Preference number: 5 (lower is better)
Translates to: LSEHSNVNVQRLVVHTQAAMLQH*ICPSAS
Trigger: TGATGCTGATGGACAGATCAAATGCTGGAGCATGGC...AGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp GTGGGTACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGATCTGCTGGAAGATATaGTTCACAGGAAGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: VGTCASVSTAMSMFRDWLICWKI*FTGRPS
Trigger: AGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGAT...CAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp CGCCCGGCCACTGTGGATCTTTTAAAGGATGAATACACAGCCCAGCTCCTTCACTCTTCAGTCTTCAGGTaGATCATGACTTTGTCGATG +
Preference number: 5 (lower is better)
Translates to: RPATVDLLKDEYTAQLLHSSVFR*IMTLSM
Trigger: CATCGACAAAGTCATGATCAACCTGAAGACTGAAGA...GTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS-3UTR CAA 90 bp AAACTGAGGCAGACGACCCCAAGCAGGACAAGGGGCTTTATGTACTGTGAATCTAGGTTGATCATGACTTaGTCGATGTCAACATCGGTG +
Preference number: 5 (lower is better)
Translates to: KLRQTTPSRTRGFMYCESRLIMT*SMSTSV
Trigger: CACCGATGTTGACATCGACAAAGTCATGATCAACCT...AGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105378.9
CDS-3UTR CAA 90 bp ACTTGTGCCTCAGTGAGCACAGCAATGTCAATGTTCAGAGACTGGTTGTACATAACTGTGTCACAGCGGTaGTCTTGTTGGGAGACTTCA +
Preference number: 5 (lower is better)
Translates to: TCASVSTAMSMFRDWLYITVSQR*SCWETS
Trigger: TGAAGTCTCCCAACAAGACAACCGCTGTGACACAGT...TATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp GCAGGGTGGAGGTGCTGCTGGGCAGAGTGGGCGCTCTaGCGAAGCGCAGGCGCAGGGGCTGTTTGGGCTGCA +
Preference number: 6 (lower is better)
Translates to: AGWRCCWAEWAL*RSAGAGAVWAA
Trigger: TGCAGCCCAAACAGCCCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp AGGACAGGGCCACGATGGGGTCCCCCTCCACCTGGCTaGCCACCGAGCTCTCCCAGCTGTTGGCCAGGTGGT +
Preference number: 6 (lower is better)
Translates to: RTGPRWGPPPPG*PPSSPSCWPGG
Trigger: ACCACCTGGCCAACAGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS GCA 72 bp GCTCTGCCGAAGCGCAGGCGCAGGGGCTGTTTGGGCTaGAGGCGACTGACCAGGCCATCACTGGCGGGAAGC +
Preference number: 6 (lower is better)
Translates to: ALPKRRRRGCLG*RRLTRPSLAGS
Trigger: GCTTCCCGCCAGTGATGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCCTGCGCCTGCGCTTCGGCAGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GGCCCGGCCTTAGCGGGGAGCCCTGGTTGGGCAGGCTaGCCAGGAGGTAGAGCACGAAGTCTCCCACCCACT +
Preference number: 6 (lower is better)
Translates to: GPALAGSPGWAG*PGGRARSLPPT
Trigger: AGTGGGTGGGAGACTTCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAGGGCTCCCCGCTAAGGCCGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp CGCAGCCGGCACAGGCTCTCCGTGGACGTCAGCACCTaGCCGCTGGGCTTCAGAAGGGACACAGTGACCAGG +
Preference number: 6 (lower is better)
Translates to: RSRHRLSVDVST*PLGFRRDTVTR
Trigger: CCTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGCTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS CCA 72 bp AGCATGCCCAGGGAGGTACCATCTCGGAGGAAGCTGTaGCCCGGCCTTAGCGGGGAGCCCTGGTTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: SMPREVPSRRKL*PGLSGEPWLGR
Trigger: CCTGCCCAACCAGGGCTCCCCGCTAAGGCCGGGCCACAGCTTCCTCCGAGATGGTACCTCCCTGGGCATGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp TGTTGCAGGGCGGGCTTCTGGCGAGTGTACTCCTCATaGAGCCGCTCCACCAGGCTCTGCACCATGCCGGGC +
Preference number: 6 (lower is better)
Translates to: CCRAGFWRVYSS*SRSTRLCTMPG
Trigger: GCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp GCTTTACACCGTTGTGCAGCCAGGACAGGGCCACGATaGGGTCCCCCTCCACCTGGCTGCCCACCGAGCTCT +
Preference number: 6 (lower is better)
Translates to: ALHRCAARTGPR*GPPPPGCPPSS
Trigger: AGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS CCA 72 bp CCAGCGAGCGCGGGGCTGAGCTGTAGAACACCGCCATaGTCTGCAGGGACAGTCGGTGCACCATGTGCACGC +
Preference number: 6 (lower is better)
Translates to: PASAGLSCRTPP*SAGTVGAPCAR
Trigger: GCGTGCACATGGTGCACCGACTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp GCGCAGATCTCGGCCAGGCGGTCCCCAGGGCTCTTGTCAGGGGTGTaGAGGAAGTGTGGGCGCAGCAGCGACTTTAGGGTGGACGTGATG +
Preference number: 6 (lower is better)
Translates to: AQISARRSPGLLSGV*RKCGRSSDFRVDVM
Trigger: CATCACGTCCACCCTAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp CCGGTCACCATGCAGTATTCCAGCAGGAAAAGCAGGTaGTGCAGGGCCAGCTTGGGCTCCAGTGGGTGGCCC +
Preference number: 6 (lower is better)
Translates to: PVTMQYSSRKSR*CRASLGSSGWP
Trigger: GGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp ACTCCTCATGCAGCCGCTCCACCAGGCTCTGCACCATaGCGGGCTGCACGTGTAGCAGGATGTCCCACCAGT +
Preference number: 6 (lower is better)
Translates to: TPHAAAPPGSAP*RAARVAGCPTS
Trigger: ACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp CGAGTGTACTCCTCATGCAGCCGCTCCACCAGGCTCTaGACCATGCCGGGCTGCACGTGTAGCAGGATGTCC +
Preference number: 6 (lower is better)
Translates to: RVYSSCSRSTRL*TMPGCTCSRMS
Trigger: GGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp ATCCGAGTGGAGAGGACCTGTTGCAGGGCGGGCTTCTaGCGAGTGTACTCCTCATGCAGCCGCTCCACCAGG +
Preference number: 6 (lower is better)
Translates to: IRVERTCCRAGF*RVYSSCSRSTR
Trigger: CCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp TCGGTGATCTTGGCGCAGATCTCGGCCAGGCGGTCCCCAGGGCTCTaGTCAGGGGTGTTGAGGAAGTGTGGGCGCAGCAGCGACTTTAGG +
Preference number: 6 (lower is better)
Translates to: SVILAQISARRSPGL*SGVLRKCGRSSDFR
Trigger: CCTAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTGCGCCAAGATCACCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp GCCTTCATGGCCAGGATCCGAGTGGAGAGGACCTGTTaGAGGGCGGGCTTCTGGCGAGTGTACTCCTCATGC +
Preference number: 6 (lower is better)
Translates to: AFMARIRVERTC*RAGFWRVYSSC
Trigger: GCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCATGAAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp CAGGGCCAGCTTGGGCTCCAGTGGGTGGCCCAGGGATaGAGAGATTCGCAGCATGCTGAGCTTCCCATGGTT +
Preference number: 6 (lower is better)
Translates to: QGQLGLQWVAQG*RDSQHAELPMV
Trigger: AACCATGGGAAGCTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTGGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp GCTTGCACAGTGAAGCCTTCATGGCCAGGATCCGAGTaGAGAGGACCTGTTGCAGGGCGGGCTTCTGGCGAG +
Preference number: 6 (lower is better)
Translates to: ACTVKPSWPGSE*RGPVAGRASGE
Trigger: CTCGCCAGAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp CTGGCGGGAAGCCAGTCCAAGTTGGGGACCAGCAGCTaGCTAGGCAGCAGGCAGCATTCATCCACCAAACCC +
Preference number: 6 (lower is better)
Translates to: LAGSQSKLGTSS*LGSRQHSSTKP
Trigger: GGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCAGCTGCTGGTCCCCAACTTGGACTGGCTTCCCGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp TCTCGCGCCAGGAACTTGAGGTGTGTGATGGCGGGGAACCTGTCTTaGCGGTTGGGGTCGGTGGTGCAGCGCATAAACAGTGAGGGCAGG +
Preference number: 6 (lower is better)
Translates to: SRARNLRCVMAGNLS*RLGSVVQRINSEGR
Trigger: CCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp GACGCACACAGGAGCACCTGCTCAGACATGTCTCGCGCCAGGAACTaGAGGTGTGTGATGGCGGGGAACCTGTCTTTGCGGTTGGGGTCG +
Preference number: 6 (lower is better)
Translates to: DAHRSTCSDMSRARN*RCVMAGNLSLRLGS
Trigger: CGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGACATGTCTGAGCAGGTGCTCCTGTGTGCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GCAGACAGCTGGGCTTCAGCAGGCCCCAGATTCGGATaGCAACCATCAACTCTCGCAGCATGCCCAGGGAGG +
Preference number: 6 (lower is better)
Translates to: ADSWASAGPRFG*QPSTLAACPGR
Trigger: CCTCCCTGGGCATGCTGCGAGAGTTGATGGTTGTCATCCGAATCTGGGGCCTGCTGAAGCCCAGCTGTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp CTGCGCCCTCATCACGGCAGCAGATCCACAGTTTGGTaGGCAGTCGGAAGAGCAGGGACATGCTGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: LRPHHGSRSTVW*AVGRAGTCCPG
Trigger: CCCAGGACAGCATGTCCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCTGCTGCCGTGATGAGGGCGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GCACTCGCCGCCACAGCCCACCACACAGGCAATTCTTaGTCCACCGCTGTTCCCACTGTGTCACAGCGGTTG +
Preference number: 6 (lower is better)
Translates to: ALAATAHHTGNS*STAVPTVSQRL
Trigger: CAACCGCTGTGACACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp GAAGGGACCAGCATTCCACCAGGCTGCTGGTCTGGCTaGACGCACACAGGAGCACCTGCTCAGACATGTCTC +
Preference number: 6 (lower is better)
Translates to: EGTSIPPGCWSG*THTGAPAQTCL
Trigger: GAGACATGTCTGAGCAGGTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAATGCTGGTCCCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp TTCCGAAGGGACCAGCATTCCACCAGGCTGCTGGTCTaGCTGGACGCACACAGGAGCACCTGCTCAGACATG +
Preference number: 6 (lower is better)
Translates to: FRRDQHSTRLLV*LDAHRSTCSDM
Trigger: CATGTCTGAGCAGGTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAATGCTGGTCCCTTCGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp GGCACTCGCCGCCACAGCCCACCACACAGGCAATTCTaGATCCACCGCTGTTCCCACTGTGTCACAGCGGTT +
Preference number: 6 (lower is better)
Translates to: GTRRHSPPHRQF*IHRCSHCVTAV
Trigger: AACCGCTGTGACACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp GCCAGGAACTTGAGGTGTGTGATGGCGGGGAACCTGTCTTTGCGGTaGGGGTCGGTGGTGCAGCGCATAAACAGTGAGGGCAGGATCTCC +
Preference number: 6 (lower is better)
Translates to: ARNLRCVMAGNLSLR*GSVVQRINSEGRIS
Trigger: GGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp TTTGCGGTTGGGGTCGGTGGTGCAGCGCATAAACAGTaGGGGCAGGATCTCCGTGTCGATGCGGCACTTCTC +
Preference number: 6 (lower is better)
Translates to: FAVGVGGAAHKQ*GQDLRVDAALL
Trigger: GAGAAGTGCCGCATCGACACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GGTGTCACTGGCCACCTTGAGGTCAGTGTTGGTGAGTaGGATGGGCAGTTTCGGCAGTGCCACCGCGGATAC +
Preference number: 6 (lower is better)
Translates to: GVTGHLEVSVGE*DGQFRQCHRGY
Trigger: GTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp CAGGTGATGGCCTCGCTGTGGCCAGAGCTGACAGAGTaGACTTCCCAGGGGTGTTCCGTGTCTAGGATATGG +
Preference number: 6 (lower is better)
Translates to: QVMASLWPELTE*TSQGCSVSRIW
Trigger: CCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS GCA 72 bp CGCACACCTTATAGAACTTCACGGGTGACGCGCTGCTaGCATCTGCAGCAGCCACCACAATGTTCCCACCGC +
Preference number: 6 (lower is better)
Translates to: RTPYRTSRVTRC*HLQQPPQCSHR
Trigger: GCGGTGGGAACATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp TCGATGCCCACGAGGGCCAGCGAAGTCCAGGACAGCTaGATGGCTTTAAAGTGTACGGCAGGGCATGTGGTG +
Preference number: 6 (lower is better)
Translates to: SMPTRASEVQDS*MALKCTAGHVV
Trigger: CACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp TGGCTGCCCACCGAGCTCTCCCAGCTGTTGGCCAGGTaGTCAGCCATGCTCCAGCATTTGATCTGTCCATCA +
Preference number: 6 (lower is better)
Translates to: WLPTELSQLLAR*SAMLQHLICPS
Trigger: TGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTCGGTGGGCAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
ENSMUST00000166964.8
ENSMUST00000170409.2
CDS CCA 72 bp CAGGCCACTGACTGTCACTGCAATCCAACCCTCCATTaGCTTGCCACCGAACAGCGTGAGGGACGGGGAGAA +
Preference number: 6 (lower is better)
Translates to: QATDCHCNPTLH*LATEQREGRGE
Trigger: TTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS CAA 72 bp TTGAGGTGTGTGATGGCGGGGAACCTGTCTTTGCGGTaGGGGTCGGTGGTGCAGCGCATAAACAGTGAGGGC +
Preference number: 6 (lower is better)
Translates to: LRCVMAGNLSLR*GSVVQRINSEG
Trigger: GCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp TTCGGCAGTGCCACCGCGGATACACGGTCCAGGTCATaGGTGGCCGACAGGATTCGCCACTTGAGGATCATG +
Preference number: 6 (lower is better)
Translates to: FGSATADTRSRS*VADRIRHLRIM
Trigger: CATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCGCGGTGGCACTGCCGAA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp GTGACCAGGCCACTGACTGTCACTGCAATCCAACCCTCCATTGGCTaGCCACCGAACAGCGTGAGGGACGGGGAGAACTTCACACGTGAG +
Preference number: 6 (lower is better)
Translates to: VTRPLTVTAIQPSIG*PPNSVRDGENFTRE
Trigger: CTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTGGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS CAA 90 bp ATGGGCAGTTTCGGCAGTGCCACCGCGGATACACGGTCCAGGTCATaGGTGGCCGACAGGATTCGCCACTTGAGGATCATGGGCTGTTTG +
Preference number: 6 (lower is better)
Translates to: MGSFGSATADTRSRS*VADRIRHLRIMGCL
Trigger: CAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCGCGGTGGCACTGCCGAAACTGCCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp CAGCTGAGAGGCACTCGCCGCCACAGCCCACCACACAGGCAATTCTaGATCCACCGCTGTTCCCACTGTGTCACAGCGGTTGTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: QLRGTRRHSPPHRQF*IHRCSHCVTAVVLL
Trigger: CAACAAGACAACCGCTGTGACACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGCCTCTCAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp GCGGATACACGGTCCAGGTCATTGGTGGCCGACAGGATTCGCCACTaGAGGATCATGGGCTGTTTGTCACCAACCACAGGCGAGATCTGC +
Preference number: 6 (lower is better)
Translates to: ADTRSRSLVADRIRH*RIMGCLSPTTGEIC
Trigger: GCAGATCTCGCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GACCACGCTGACGCACACCTTATAGAACTTCACGGGTaGCGCGCTGCTGCCATCTGCAGCAGCCACCACAAT +
Preference number: 6 (lower is better)
Translates to: DHADAHLIELHG*RAAAICSSHHN
Trigger: ATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCGTCAGCGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp GGTCCAGGTCATTGGTGGCCGACAGGATTCGCCACTTaGGGATCATGGGCTGTTTGTCACCAACCACAGGCG +
Preference number: 6 (lower is better)
Translates to: GPGHWWPTGFAT*GSWAVCHQPQA
Trigger: CGCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp AGGGATGGAGAGATTCGCAGCATGCTGAGCTTCCCATaGTTATCGATGCCCACGAGGGCCAGCGAAGTCCAG +
Preference number: 6 (lower is better)
Translates to: RDGEIRSMLSFP*LSMPTRASEVQ
Trigger: CTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGGGAAGCTCAGCATGCTGCGAATCTCTCCATCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp AGGCAGCAGGCAGCATTCATCCACCAAACCCTCATCTaGTTCACTGGCTGCGCCCTCATCACGGCAGCAGAT +
Preference number: 6 (lower is better)
Translates to: RQQAAFIHQTLI*FTGCALITAAD
Trigger: ATCTGCTGCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp CCACTGACTGTCACTGCAATCCAACCCTCCATTGGCTaGCCACCGAACAGCGTGAGGGACGGGGAGAACTTC +
Preference number: 6 (lower is better)
Translates to: PLTVTAIQPSIG*PPNSVRDGENF
Trigger: GAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS CAA 72 bp CGGTCCAGGTCATTGGTGGCCGACAGGATTCGCCACTaGAGGATCATGGGCTGTTTGTCACCAACCACAGGC +
Preference number: 6 (lower is better)
Translates to: RSRSLVADRIRH*RIMGCLSPTTG
Trigger: GCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp GTAGCAGGATGTCCCACCAGTCATAGCCGGTCACCATaGAGTATTCCAGCAGGAAAAGCAGGTGCTGCAGGG +
Preference number: 6 (lower is better)
Translates to: VAGCPTSHSRSP*SIPAGKAGAAG
Trigger: CCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGGACATCCTGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CCA 72 bp GGCAGCATTCATCCACCAAACCCTCATCTGGTTCACTaGCTGCGCCCTCATCACGGCAGCAGATCCACAGTT +
Preference number: 6 (lower is better)
Translates to: GSIHPPNPHLVH*LRPHHGSRSTV
Trigger: AACTGTGGATCTGCTGCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp AGGAACTTGAGGTGTGTGATGGCGGGGAACCTGTCTTaGCGGTTGGGGTCGGTGGTGCAGCGCATAAACAGT +
Preference number: 6 (lower is better)
Translates to: RNLRCVMAGNLS*RLGSVVQRINS
Trigger: ACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp TTGATCATGACTTTGTCGATGTCAACATCGGTGATCTaGGCGCAGATCTCGGCCAGGCGGTCCCCAGGGCTC +
Preference number: 6 (lower is better)
Translates to: LIMTLSMSTSVI*AQISARRSPGL
Trigger: GAGCCCTGGGGACCGCCTGGCCGAGATCTGCGCCAAGATCACCGATGTTGACATCGACAAAGTCATGATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp CACCGCTGTTCCCACTGTGTCACAGCGGTTGTCTTGTaGGGAGACTTCAGCATGGTGACACAGCCACACCTG +
Preference number: 6 (lower is better)
Translates to: HRCSHCVTAVVL*GDFSMVTQPHL
Trigger: CAGGTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGACACAGTGGGAACAGCGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp TTCTTGATCCACCGCTGTTCCCACTGTGTCACAGCGGTTGTCTTGTaGGGAGACTTCAGCATGGTGACACAGCCACACCTGGTGCAGGCT +
Preference number: 6 (lower is better)
Translates to: FLIHRCSHCVTAVVL*GDFSMVTQPHLVQA
Trigger: AGCCTGCACCAGGTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGACACAGTGGGAACAGCGGTGGATCAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS TCA 72 bp CAATCCAACCCTCCATTGGCTTGCCACCGAACAGCGTaGGGGACGGGGAGAACTTCACACGTGAGAACTTCT +
Preference number: 6 (lower is better)
Translates to: QSNPPLACHRTA*GTGRTSHVRTS
Trigger: AGAAGTTCTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000164705.8
ENSMUST00000165684.8
CDS TCA 72 bp TCACAGCGGTTGTCTTGTTGGGAGACTTCAGCATGGTaGCACAGCCACACCTGGTGCAGGCTTTGCACTCCT +
Preference number: 6 (lower is better)
Translates to: SQRLSCWETSAW*HSHTWCRLCTP
Trigger: AGGAGTGCAAAGCCTGCACCAGGTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp GCATTCATCCACCAAACCCTCATCTGGTTCACTGGCTaGGCCCTCATCACGGCAGCAGATCCACAGTTTGGT +
Preference number: 6 (lower is better)
Translates to: AFIHQTLIWFTG*ALITAADPQFG
Trigger: ACCAAACTGTGGATCTGCTGCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp ATCCACCGCTGTTCCCACTGTGTCACAGCGGTTGTCTaGTTGGGAGACTTCAGCATGGTGACACAGCCACAC +
Preference number: 6 (lower is better)
Translates to: IHRCSHCVTAVV*LGDFSMVTQPH
Trigger: GTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGACACAGTGGGAACAGCGGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp GCCGACAGGATTCGCCACTTGAGGATCATGGGCTGTTaGTCACCAACCACAGGCGAGATCTGCTGGAAGATA +
Preference number: 6 (lower is better)
Translates to: ADRIRHLRIMGC*SPTTGEICWKI
Trigger: TATCTTCCAGCAGATCTCGCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp ATGGGCTGTTTGTCACCAACCACAGGCGAGATCTGCTGGAAGATATaGTTCACAGGAAGGCCCTCTTTCCGAAGGGACCAGCATTCCACC +
Preference number: 6 (lower is better)
Translates to: MGCLSPTTGEICWKI*FTGRPSFRRDQHST
Trigger: GGTGGAATGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATCTCGCCTGTGGTTGGTGACAAACAGCCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS GCA 72 bp AAGTCTCCCACCCACTGTAGCAACTGCTGCAGCGCCTaGAAAGTGTTCATGTCAAGGACGAACTCTTCAGTC +
Preference number: 6 (lower is better)
Translates to: KSPTHCSNCCSA*KVFMSRTNSSV
Trigger: GACTGAAGAGTTCGTCCTTGACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAGTGGGTGGGAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 72 bp TTGTCACCAACCACAGGCGAGATCTGCTGGAAGATATaGTTCACAGGAAGGCCCTCTTTCCGAAGGGACCAG +
Preference number: 6 (lower is better)
Translates to: LSPTTGEICWKI*FTGRPSFRRDQ
Trigger: CTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATCTCGCCTGTGGTTGGTGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
CDS CAA 90 bp TCCGTGTCTAGGATATGGATCATGTGTGTCAGATCCTGGTCATCATaGCGTAGGTCTGTGGTGAAGGCAATGAGGTTCCTGCAGGACCAG +
Preference number: 6 (lower is better)
Translates to: SVSRIWIMCVRSWSS*RRSVVKAMRFLQDQ
Trigger: CTGGTCCTGCAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS CCA 72 bp GAGTGCACTTCCCAGGGGTGTTCCGTGTCTAGGATATaGATCATGTGTGTCAGATCCTGGTCATCATTGCGT +
Preference number: 6 (lower is better)
Translates to: ECTSQGCSVSRI*IMCVRSWSSLR
Trigger: ACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS CCA 72 bp TCCGTGTCTAGGATATGGATCATGTGTGTCAGATCCTaGTCATCATTGCGTAGGTCTGTGGTGAAGGCAATG +
Preference number: 6 (lower is better)
Translates to: SVSRIWIMCVRS*SSLRRSVVKAM
Trigger: CATTGCCTTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS CAA 72 bp AGGATATGGATCATGTGTGTCAGATCCTGGTCATCATaGCGTAGGTCTGTGGTGAAGGCAATGAGGTTCCTG +
Preference number: 6 (lower is better)
Translates to: RIWIMCVRSWSS*RRSVVKAMRFL
Trigger: CAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8
ENSMUST00000166964.8
CDS CAA 90 bp GCCTGCAAAGTGTTCATGTCAAGGACGAACTCTTCAGTCTTCAGGTaGATCATGACTTTGTCGATGTCAACATCGGTGATCTTGGCGCAG +
Preference number: 6 (lower is better)
Translates to: ACKVFMSRTNSSVFR*IMTLSMSTSVILAQ
Trigger: CTGCGCCAAGATCACCGATGTTGACATCGACAAAGTCATGATCAACCTGAAGACTGAAGAGTTCGTCCTTGACATGAACACTTTGCAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105378.9
ENSMUST00000165684.8