RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MED12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079487

Ensembl transcript IDs: ENSMUST00000087948.11, ENSMUST00000087956.6, ENSMUST00000117203.8, ENSMUST00000117706.8

Found 890 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTaGGCCACATCCAGTGTACAAGCAGTTCCTCCAGGT +
Preference number: 3 (lower is better)
Translates to: RPGRGLGIKQKG*ATSSVQAVPPG
Trigger: ACCTGGAGGAACTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGCTGCTGGGTCTaGTGCAGGCCCTGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCWV*CRPWRW
Trigger: CCAGCGCCAGGGCCTGCAGCAGACCCAGCAGCAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAGGCAGCCAGCAGGTaGCGGTCACAGGAGGACCGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVEAASR*RSQEDR
Trigger: CCGGTCCTCCTGTGACCGCCACCTGCTGGCTGCCTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCAGGCCCTGGCGCTaGAACTGGGGCTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCRPWR*NWGWDW
Trigger: CCAGTCCCAGCCCCAGTTCCAGCGCCAGGGCCTGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGCTAGTTGGGGGCTaGGGTGCTGGGGTAGTGGGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLLVGG*GAGVVG
Trigger: GCCCACTACCCCAGCACCTCAGCCCCCAACTAGCAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCCTCGTGCCACTCTaGGGTCCACTCGGACTGTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPLVPL*GPLGLC
Trigger: GCACAGTCCGAGTGGACCGCAGAGTGGCACGAGGGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCCCTCGTGCCACTCTaGGGTCCACTCGGACTGTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPLVPL*GPLGLC
Trigger: GCACAGTCCGAGTGGACCGCAGAGTGGCACGAGGGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGCTCCTCCCCTCGTaGCACTCTGCGGTCCACTCG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLLLPS*HSAVHS
Trigger: CGAGTGGACCGCAGAGTGGCACGAGGGGAGGAGCAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCGCACGGGGCGGTATaGATCCACACGAGGGCCACC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSHGAV*IHTRAT
Trigger: GGTGGCCCTCGTGTGGATCCATACCGCCCCGTGCGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCGCACGGGGCGGTATaGATCCACACGAGGGCCACC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSHGAV*IHTRAT
Trigger: GGTGGCCCTCGTGTGGATCCATACCGCCCCGTGCGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCGAAGGCGCTGTCCCTaGGGCACTGTGGGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRRRCP*GTVGCC
Trigger: GCAGCAACCCACAGTGCCCCAGGGACAGCGCCTTCG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACGTTCCGGGAGACCTaGGCCGTGACCTGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTFRET*AVTWCW
Trigger: CCAACACCAGGTCACGGCTCAGGTCTCCCGGAACGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGAGCCCCGTGTAGGTaGAAGTGTGAGCGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRAPCR*KCERQG
Trigger: ACCCTGCCGCTCACACTTTCACCTACACGGGGCTCG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGGCTTCGGGCCGGTTaGGTCGTCGCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRLRAG*VVASAH
Trigger: ATGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGCCCCATCCACGATaGGGTTCTGGGAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQPHPR*GSGRQP
Trigger: TGGCTGCCTCCCAGAACCGCATCGTGGATGGGGCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCACTGGGCCGCTGTTaGAGGTGGCGGGTAGGATCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPLGRC*RWRVGS
Trigger: AGATCCTACCCGCCACCTGCAACAGCGGCCCAGTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGCTGCTGGGTCTaGTGCAGGCCCTGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCWV*CRPWRW
Trigger: CCAGCGCCAGGGCCTGCAGCAGACCCAGCAGCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCTGTCTGTTGCTGCTaGTGGGTCTGCTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAVCCC*WVCCRP
Trigger: GGGCCTGCAGCAGACCCAGCAGCAGCAACAGACAGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCTGTCTGTTGCTGCTaGTGGGTCTGCTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAVCCC*WVCCRP
Trigger: GGGCCTGCAGCAGACCCAGCAGCAGCAACAGACAGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAGGCAGCCAGCAGGTaGCGGTCACAGGAGGACCGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQEAASR*RSQEDR
Trigger: CCGGTCCTCCTGTGACCGCCACCTGCTGGCTGCCTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCCACGATGCGGTTCTaGGAGGCAGCCAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSTMRF*EAASRW
Trigger: CCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCACGATGCGGTTCTaGGAGGCAGCCAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTMRF*EAASRW
Trigger: CCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGAACGGACGCCTGCCTaGACACCCTGGGCACTCAAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYERTPA*TPWALN
Trigger: GTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCAGGCCCTGGCGCTaGAACTGGGGCTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCRPWR*NWGWDW
Trigger: CCAGTCCCAGCCCCAGTTCCAGCGCCAGGGCCTGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTCTGTTGCTGCTGCTaGGTCTGCTGCAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVCCCC*VCCRPW
Trigger: CCAGGGCCTGCAGCAGACCCAGCAGCAGCAACAGAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCTGCTGGAGCTGTTaGCGAAGGCGCTGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLCWSC*RRRCPW
Trigger: CCAGGGACAGCGCCTTCGCCAACAGCTCCAGCAGAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087956.6
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGCTAGTTGGGGGCTaGGGTGCTGGGGTAGTGGGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLLVGG*GAGVVG
Trigger: GCCCACTACCCCAGCACCTCAGCCCCCAACTAGCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGCTAGTTGGGGGCTaGGGTGCTGGGGTAGTGGGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLLVGG*GAGVVG
Trigger: GCCCACTACCCCAGCACCTCAGCCCCCAACTAGCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGCAGGATGGAAGTTaGACGGACGCCTGCCTGGAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRQDGS*TDACLD
Trigger: GTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGTTGGGGGCTGAGGTaGTGGGGTAGTGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSWGLR*WGSGQR
Trigger: TCTCTGCCCACTACCCCAGCACCTCAGCCCCCAACT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCCCTCGTGCCACTCTaGGGTCCACTCGGACTGTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPLVPL*GPLGLC
Trigger: GCACAGTCCGAGTGGACCGCAGAGTGGCACGAGGGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGCTCCTCCCCTCGTaGCACTCTGCGGTCCACTCG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLLLPS*HSAVHS
Trigger: CGAGTGGACCGCAGAGTGGCACGAGGGGAGGAGCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGCTCCTCCCCTCGTaGCACTCTGCGGTCCACTCG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLLLPS*HSAVHS
Trigger: CGAGTGGACCGCAGAGTGGCACGAGGGGAGGAGCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTTTGCGCTCCTCAGTaGTCGGAGGAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFCAPQ*SEEQPL
Trigger: CAGGGGCTGCTCCTCCGAGCACTGAGGAGCGCAAAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGCTGGGTCTGCTaGAGGCCCTGGCGCTGGAAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCWVC*RPWRWN
Trigger: GTTCCAGCGCCAGGGCCTGCAGCAGACCCAGCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGCTGGGTCTGCTaGAGGCCCTGGCGCTGGAAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCWVC*RPWRWN
Trigger: GTTCCAGCGCCAGGGCCTGCAGCAGACCCAGCAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGGGGCTGAGGTGCTaGGGTAGTGGGCAGAGAACT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYWGLRC*GSGQRT
Trigger: AGTTCTCTGCCCACTACCCCAGCACCTCAGCCCCCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGGTGTACTGCTAGTTaGGGGCTGAGGTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGCTAS*GLRCWG
Trigger: ACCCCAGCACCTCAGCCCCCAACTAGCAGTACACCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGTGTACTGCTAGTTaGGGGCTGAGGTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGCTAS*GLRCWG
Trigger: ACCCCAGCACCTCAGCCCCCAACTAGCAGTACACCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGAGGCGCTGGGCCTaGGCACTACTCAACACTGGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYMRRWA*ALLNTG
Trigger: CCCAGTGTTGAGTAGTGCCCAGGCCCAGCGCCTCAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACAATCTGGTGCACCTaGCTGTGGAGGGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTIWCT*LWREAR
Trigger: CCTGGCCTCCCTCCACAGCCAGGTGCACCAGATTGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGGTAATAGGCTCTaGGTCGAGGCCTCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPGNRL*VEASGG
Trigger: CCCACCTGAGGCCTCGACCCAGAGCCTATTACCTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCAGGTAATAGGCTCTaGGTCGAGGCCTCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPGNRL*VEASGG
Trigger: CCCACCTGAGGCCTCGACCCAGAGCCTATTACCTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCGCACGGGGCGGTATaGATCCACACGAGGGCCACC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSHGAV*IHTRAT
Trigger: GGTGGCCCTCGTGTGGATCCATACCGCCCCGTGCGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTCCCTGGGGCACTGTaGGTTGCTGCTGCCGGTATA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVPGAL*VAAAGI
Trigger: TATACCGGCAGCAGCAACCCACAGTGCCCCAGGGAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCGAAGGCGCTGTCCCTaGGGCACTGTGGGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRRRCP*GTVGCC
Trigger: GCAGCAACCCACAGTGCCCCAGGGACAGCGCCTTCG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTTGCCTGGAGCTGTTaGCGAAGGCGCTGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFAWSC*RRRCPW
Trigger: CCAGGGACAGCGCCTTCGCCAACAGCTCCAGGCAAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCTGCCTGGACACCCTaGGCACTCAACGGAGTCATG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPAWTP*ALNGVM
Trigger: CATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGCCGCTGTTGCAGGTaGCGGGTAGGATCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGRCCR*RVGSAG
Trigger: CCCTGCAGATCCTACCCGCCACCTGCAACAGCGGCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087956.6
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGCCGCTGTTGCAGGTaGCGGGTAGGATCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGRCCR*RVGSAG
Trigger: CCCTGCAGATCCTACCCGCCACCTGCAACAGCGGCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087956.6
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACCAGGGGACGATGCTaGGGGCACATAAGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTRGRC*GHISRS
Trigger: TGACCTGCTTATGTGCCCTCAGCATCGTCCCCTGGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCACGATGCCGACCTaGGCGTTTGCAGCTTACAGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTMPT*AFAAYS
Trigger: GCTGTAAGCTGCAAACGCTCAGGTCGGCATCGTGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCACTCATGGCTGCATaGCTCCTCCTGTGGGATTGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYALMAA*LLLWDW
Trigger: CCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACGTTCCGGGAGACCTaGGCCGTGACCTGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTFRET*AVTWCW
Trigger: CCAACACCAGGTCACGGCTCAGGTCTCCCGGAACGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAAGGGCGAAGCTCGTaGTCTGCTCCAGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQGRSS*SAPERS
Trigger: GGAACGTTCTGGAGCAGATCACGAGCTTCGCCCTTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCGCCATCTGGTCCTaGTTGAGGATGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCAIWS*LRMRQA
Trigger: TGCCTGCCTCATCCTCAATCAGGACCAGATGGCGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCGCCATCTGGTCCTaGTTGAGGATGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCAIWS*LRMRQA
Trigger: TGCCTGCCTCATCCTCAATCAGGACCAGATGGCGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGAGTGTCAATCATaGACTCCGGTGCCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPECQS*TPVPSA
Trigger: TGCGCTGGGCACCGGAGTTCATGATTGACACTCTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCAGAGTGTCAATCATaGACTCCGGTGCCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPECQS*TPVPSA
Trigger: TGCGCTGGGCACCGGAGTTCATGATTGACACTCTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCGAGCCCCGTGTAGGTaGAAGTGTGAGCGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRAPCR*KCERQG
Trigger: ACCCTGCCGCTCACACTTTCACCTACACGGGGCTCG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCGAGCCCCGTGTAGGTaGAAGTGTGAGCGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRAPCR*KCERQG
Trigger: ACCCTGCCGCTCACACTTTCACCTACACGGGGCTCG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCAGCATTGAGGAGTaGAGGGATGGCTGCACAGCG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSSIEE*RDGCTA
Trigger: CGCTGTGCAGCCATCCCTTCACTCCTCAATGCTGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCAGCATTGAGGAGTaGAGGGATGGCTGCACAGCG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSSIEE*RDGCTA
Trigger: CGCTGTGCAGCCATCCCTTCACTCCTCAATGCTGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGAAGAGCCCAGGTGCTaGCCCTTTTCCAGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYEEPRC*PFSSSS
Trigger: GGAGGAACTGGAAAAGGGTCAGCACCTGGGCTCTTC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAAGAGCCCAGGTGCTaGCCCTTTTCCAGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVEEPRC*PFSSSS
Trigger: GGAGGAACTGGAAAAGGGTCAGCACCTGGGCTCTTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCTCCAGACTGTCTaGTTGGCGCTCCCCCAAGTC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLLQTV*LALPQV
Trigger: GACTTGGGGGAGCGCCAATCAGACAGTCTGGAGAAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTAGCTTGCTGCTGCTaGTGCCTTCAGCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLACCC*CLQPPC
Trigger: GCAAGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTCCTCTAGCTTGCTaGTGCTGCTGCCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGPLAC*CCCLQP
Trigger: AGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGGACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGCATCATCTCGCTaGTTCCCCACCCCAAACAGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRASSR*FPTPNS
Trigger: ACTGTTTGGGGTGGGGAAGCAGCGAGATGATGCCCG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCGGGCATCATCTCGCTaGTTCCCCACCCCAAACAGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRASSR*FPTPNS
Trigger: ACTGTTTGGGGTGGGGAAGCAGCGAGATGATGCCCG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGGCTTCGGGCCGGTTaGGTCGTCGCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRLRAG*VVASAH
Trigger: ATGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGGCTTCGGGCCGGTTaGGTCGTCGCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRLRAG*VVASAH
Trigger: ATGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCGAAGCTCGTGATCTaGTCCAGAACGTTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAKLVI*SRTFRE
Trigger: CTCCCGGAACGTTCTGGAGCAGATCACGAGCTTCGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCGAAGCTCGTGATCTaGTCCAGAACGTTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAKLVI*SRTFRE
Trigger: CTCCCGGAACGTTCTGGAGCAGATCACGAGCTTCGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCCCATCCACGATaGGGTTCTGGGAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQPHPR*GSGRQP
Trigger: TGGCTGCCTCCCAGAACCGCATCGTGGATGGGGCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCACTGGGCCGCTGTTaGAGGTGGCGGGTAGGATCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPLGRC*RWRVGS
Trigger: AGATCCTACCCGCCACCTGCAACAGCGGCCCAGTGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCACTGGGCCGCTGTTaGAGGTGGCGGGTAGGATCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPLGRC*RWRVGS
Trigger: AGATCCTACCCGCCACCTGCAACAGCGGCCCAGTGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCCGTAGCATCTGCTaGTGCTGCTGTTGCTGTCGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCRSIC*CCCCCR
Trigger: CCGACAGCAACAGCAGCAGCAGCAGATGCTACGGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCCGTAGCATCTGCTaGTGCTGCTGTTGCTGTCGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCRSIC*CCCCCR
Trigger: CCGACAGCAACAGCAGCAGCAGCAGATGCTACGGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCTGTCTGTTGCTGCTaGTGGGTCTGCTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQAVCCC*WVCCRP
Trigger: GGGCCTGCAGCAGACCCAGCAGCAGCAACAGACAGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTGCTGCTGCTGCTaGCGTAGCATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*RSICCC
Trigger: GCAGCAGCAGATGCTACGGCAGCAGCAGCAGCAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGTTGCTGCTGCTaGTGCCGTAGCATCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*CRSICC
Trigger: GCAGCAGATGCTACGGCAGCAGCAGCAGCAACAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGAGCAATAGGCAGGTaGTCAAGTGGTGAGCCGGTC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGAIGR*SSGEPV
Trigger: GACCGGCTCACCACTTGACCACCTGCCTATTGCTCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCACCAGAGGCAAGTaGTACGACATGCCAAGGGCG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCTRGK*YDMPRA
Trigger: CGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCCACGATGCGGTTCTaGGAGGCAGCCAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTMRF*EAASRW
Trigger: CCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTTGCATGAGGCGCTaGGCCTGGGCACTACTCAAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSCMRR*AWALLN
Trigger: GTTGAGTAGTGCCCAGGCCCAGCGCCTCATGCAACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGTTGCATGAGGCGCTaGGCCTGGGCACTACTCAAC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSCMRR*AWALLN
Trigger: GTTGAGTAGTGCCCAGGCCCAGCGCCTCATGCAACT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCTGGCTGGAGTAGCTaGGGGGCACCATGGTACCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAGWSS*GAPWYL
Trigger: CAGGTACCATGGTGCCCCCCAGCTACTCCAGCCAGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCTGGCTGGAGTAGCTaGGGGGCACCATGGTACCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQAGWSS*GAPWYL
Trigger: CAGGTACCATGGTGCCCCCCAGCTACTCCAGCCAGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGAACGGACGCCTGCCTaGACACCCTGGGCACTCAAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKERTPA*TPWALN
Trigger: GTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAACGGACGCCTGCCTaGACACCCTGGGCACTCAAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQERTPA*TPWALN
Trigger: GTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCTGCTCAGGCAGGATaGAAGTTGAACGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAAQAG*KLNGRL
Trigger: CAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCTGCTCAGGCAGGATaGAAGTTGAACGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAAQAG*KLNGRL
Trigger: CAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTCTGTTGCTGCTGCTaGGTCTGCTGCAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVCCCC*VCCRPW
Trigger: CCAGGGCCTGCAGCAGACCCAGCAGCAGCAACAGAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTGGTCAAGTGGTaGGCCGGTCTTAATTCGGCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQVVKW*AGLNSA
Trigger: AGCCGAATTAAGACCGGCTCACCACTTGACCACCTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGGTGGTCAAGTGGTaGGCCGGTCTTAATTCGGCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQVVKW*AGLNSA
Trigger: AGCCGAATTAAGACCGGCTCACCACTTGACCACCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGGAGACCTGAGCCGTaGCCTGGTGTTGGTCATAAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGRPEP*PGVGHN
Trigger: ATTATGACCAACACCAGGTCACGGCTCAGGTCTCCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGAGACCTGAGCCGTaGCCTGGTGTTGGTCATAAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGRPEP*PGVGHN
Trigger: ATTATGACCAACACCAGGTCACGGCTCAGGTCTCCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGGCAGGATGGAAGTTaGACGGACGCCTGCCTGGAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRQDGS*TDACLD
Trigger: GTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGTTGGGGGCTGAGGTaGTGGGGTAGTGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSWGLR*WGSGQR
Trigger: TCTCTGCCCACTACCCCAGCACCTCAGCCCCCAACT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTTGGGGGCTGAGGTaGTGGGGTAGTGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSWGLR*WGSGQR
Trigger: TCTCTGCCCACTACCCCAGCACCTCAGCCCCCAACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCGACCTGAGCGTTTaGAGCTTACAGCCCATTCAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYADLSV*SLQPIH
Trigger: GTGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCGACCTGAGCGTTTaGAGCTTACAGCCCATTCAC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVADLSV*SLQPIH
Trigger: GTGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCCTTCTCATCAGCTaGTTCAGATTCTCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVALLIS*FRFSAA
Trigger: CGCTGCGGAGAATCTGAAGCAGCTGATGAGAAGGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCCTTCTCATCAGCTaGTTCAGATTCTCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYALLIS*FRFSAA
Trigger: CGCTGCGGAGAATCTGAAGCAGCTGATGAGAAGGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGCTHG*MTPPVG
Trigger: TCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGCTHG*MTPPVG
Trigger: TCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGACCAACCGCTGGTTaGACTCATGGCTGCATGACT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRPTAG*THGCMT
Trigger: AGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCGACCAACCGCTGGTTaGACTCATGGCTGCATGACT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRPTAG*THGCMT
Trigger: AGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTGCGTCGTCGCTTCTaGCCATCTTCCCCACCTAAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLRRRF*PSSPPK
Trigger: CTTAGGTGGGGAAGATGGGCAGAAGCGACGACGCAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCACAGGTTTGGTCTTaGTGCTGCTGGGCATGTTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAQVWS*CCWACC
Trigger: GCAACATGCCCAGCAGCAGCAAGACCAAACCTGTGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCACAGGTTTGGTCTTaGTGCTGCTGGGCATGTTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAQVWS*CCWACC
Trigger: GCAACATGCCCAGCAGCAGCAAGACCAAACCTGTGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGGAGTCCCTCGCGCTaGTCATCCTGTCCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRSPSR*SSCPFR
Trigger: TCTGAAAGGACAGGATGAGCAGCGCGAGGGACTCCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGAGTCCCTCGCGCTaGTCATCCTGTCCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRSPSR*SSCPFR
Trigger: TCTGAAAGGACAGGATGAGCAGCGCGAGGGACTCCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCCACTCTGTAGTCTaGTGGGTACTACGCTGCACA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAHSVV*WVLRCT
Trigger: TGTGCAGCGTAGTACCCAGCAGACTACAGAGTGGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTTTGCGCTCCTCAGTaGTCGGAGGAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFCAPQ*SEEQPL
Trigger: CAGGGGCTGCTCCTCCGAGCACTGAGGAGCGCAAAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTTTGCGCTCCTCAGTaGTCGGAGGAGCAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFCAPQ*SEEQPL
Trigger: CAGGGGCTGCTCCTCCGAGCACTGAGGAGCGCAAAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGCACTGTGGGTTGCTaGTGCCGGTATACAGATGTC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGTVGC*CRYTDV
Trigger: GACATCTGTATACCGGCAGCAGCAACCCACAGTGCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGCACTGTGGGTTGCTaGTGCCGGTATACAGATGTC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGTVGC*CRYTDV
Trigger: GACATCTGTATACCGGCAGCAGCAACCCACAGTGCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGGGCACTGTGGGTTaGTGCTGCCGGTATACAGAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWGTVG*CCRYTD
Trigger: ATCTGTATACCGGCAGCAGCAACCCACAGTGCCCCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAAAGCTGCTGTCTGTTaGTGCTGCTGGGTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVKAAVC*CCWVCC
Trigger: GCAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGCCGTAGCATCTaGTGCTGCTGCTGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCRSI*CCCCCC
Trigger: ACAGCAACAGCAGCAGCAGCAGATGCTACGGCAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACTTCCTGCAGGCCCTaGCCGATAGTACTCAGCCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTSCRP*PIVLSH
Trigger: ATGGCTGAGTACTATCGGCCAGGGCCTGCAGGAAGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCACACCATCCAGCTaGAGAGCCAATCTCCGGGTA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLTPSS*RANLRV
Trigger: TACCCGGAGATTGGCTCTCCAGCTGGATGGTGTGAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCACACCATCCAGCTaGAGAGCCAATCTCCGGGTA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLTPSS*RANLRV
Trigger: TACCCGGAGATTGGCTCTCCAGCTGGATGGTGTGAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGGGGCTGAGGTGCTaGGGTAGTGGGCAGAGAACT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWGLRC*GSGQRT
Trigger: AGTTCTCTGCCCACTACCCCAGCACCTCAGCCCCCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGGTGTACTGCTAGTTaGGGGCTGAGGTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGCTAS*GLRCWG
Trigger: ACCCCAGCACCTCAGCCCCCAACTAGCAGTACACCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGCACTGTTACCCTCTaGCATGGGCAAGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGTVTL*HGQVGR
Trigger: CCTTCCAACTTGCCCATGCCAGAGGGTAACAGTGCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGCACTGTTACCCTCTaGCATGGGCAAGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGTVTL*HGQVGR
Trigger: CCTTCCAACTTGCCCATGCCAGAGGGTAACAGTGCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGTTTCTCAGGGGATaGGCTTCCCTTCCCCTCACA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWFLRG*ASLPLT
Trigger: TGTGAGGGGAAGGGAAGCCCATCCCCTGAGAAACCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCTGGTTGCACTCATaGCTGCATGACTCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRWLHS*LHDSSC
Trigger: ACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCGCTGGTTGCACTCATaGCTGCATGACTCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRWLHS*LHDSSC
Trigger: ACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTGCCCAGCGCATATTaGATTCCGATGGCTCCACGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVPSAY*IPMAPR
Trigger: ACGTGGAGCCATCGGAATCCAATATGCGCTGGGCAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTGCCCAGCGCATATTaGATTCCGATGGCTCCACGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVPSAY*IPMAPR
Trigger: ACGTGGAGCCATCGGAATCCAATATGCGCTGGGCAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATGAGGCGCTGGGCCTaGGCACTACTCAACACTGGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQMRRWA*ALLNTG
Trigger: CCCAGTGTTGAGTAGTGCCCAGGCCCAGCGCCTCAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATGAGGCGCTGGGCCTaGGCACTACTCAACACTGGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKMRRWA*ALLNTG
Trigger: CCCAGTGTTGAGTAGTGCCCAGGCCCAGCGCCTCAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACAATCTGGTGCACCTaGCTGTGGAGGGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTIWCT*LWREAR
Trigger: CCTGGCCTCCCTCCACAGCCAGGTGCACCAGATTGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACAATCTGGTGCACCTaGCTGTGGAGGGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTIWCT*LWREAR
Trigger: CCTGGCCTCCCTCCACAGCCAGGTGCACCAGATTGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCAGACTGTCTGATTaGCGCTCCCCCAAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSRLSD*RSPKSF
Trigger: GAAGGACTTGGGGGAGCGCCAATCAGACAGTCTGGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCAGGTAATAGGCTCTaGGTCGAGGCCTCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPGNRL*VEASGG
Trigger: CCCACCTGAGGCCTCGACCCAGAGCCTATTACCTGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATAGTCCTCGTTCTTaGTGGCTGGCTGGCTGCGTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHSPRS*WLAGCV
Trigger: AACGCAGCCAGCCAGCCACCAAGAACGAGGACTATG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCATAGTCCTCGTTCTTaGTGGCTGGCTGGCTGCGTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHSPRS*WLAGCV
Trigger: AACGCAGCCAGCCAGCCACCAAGAACGAGGACTATG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGCAGGTAGTGGCTaGTTTTGGGTATACAGGCCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPAGSG*FWVYRP
Trigger: GGGCCTGTATACCCAAAACCAGCCACTACCTGCTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTCCCTGGGGCACTGTaGGTTGCTGCTGCCGGTATA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVPGAL*VAAAGI
Trigger: TATACCGGCAGCAGCAACCCACAGTGCCCCAGGGAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTTGCCTGGAGCTGTTaGCGAAGGCGCTGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFAWSC*RRRCPW
Trigger: CCAGGGACAGCGCCTTCGCCAACAGCTCCAGGCAAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCTGTATCTTTGCCTaGAGCTGTTGGCGAAGGCGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLCIFA*SCWRRR
Trigger: GCGCCTTCGCCAACAGCTCCAGGCAAAGATACAGAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCTGTATCTTTGCCTaGAGCTGTTGGCGAAGGCGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLCIFA*SCWRRR
Trigger: GCGCCTTCGCCAACAGCTCCAGGCAAAGATACAGAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCTGCCTGGACACCCTaGGCACTCAACGGAGTCATG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPAWTP*ALNGVM
Trigger: CATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTTGGTGCTGGGCTGTaGCTGGGTATTAGAGAGCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVGAGL*LGIREL
Trigger: CAGCTCTCTAATACCCAGCCACAGCCCAGCACCAAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCGTCCAAATATGTTaGTGCTGGGCTGTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSVQIC*CWAVAG
Trigger: CCCAGCCACAGCCCAGCACCAACATATTTGGACGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCTGTTTGGGATCTTaGGGGTACACATCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFCLGS*GYTSGG
Trigger: GCCTCCCGATGTGTACCCTCAAGATCCCAAACAGAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACCAGGGGACGATGCTaGGGGCACATAAGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTRGRC*GHISRS
Trigger: TGACCTGCTTATGTGCCCTCAGCATCGTCCCCTGGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACCAGGGGACGATGCTaGGGGCACATAAGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTRGRC*GHISRS
Trigger: TGACCTGCTTATGTGCCCTCAGCATCGTCCCCTGGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCTGAAGGATACAGCTaGGGCCAAAAACCAGGGGAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSEGYS*GQKPGD
Trigger: GTCCCCTGGTTTTTGGCCTCAGCTGTATCCTTCAGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTTGCACGGACCTGCTaGGTAAAGGCACTGTTACCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVFARTC*VKALLP
Trigger: GGGTAACAGTGCCTTTACTCAGCAGGTCCGTGCAAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCACGATGCCGACCTaGGCGTTTGCAGCTTACAGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSTMPT*AFAAYS
Trigger: GCTGTAAGCTGCAAACGCTCAGGTCGGCATCGTGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCACGATGCCGACCTaGGCGTTTGCAGCTTACAGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTMPT*AFAAYS
Trigger: GCTGTAAGCTGCAAACGCTCAGGTCGGCATCGTGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCACTCATGGCTGCATaGCTCCTCCTGTGGGATTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKALMAA*LLLWDW
Trigger: CCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAAGGGCGAAGCTCGTaGTCTGCTCCAGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQGRSS*SAPERS
Trigger: GGAACGTTCTGGAGCAGATCACGAGCTTCGCCCTTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCGCCATCTGGTCCTaGTTGAGGATGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCAIWS*LRMRQA
Trigger: TGCCTGCCTCATCCTCAATCAGGACCAGATGGCGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCGCCATCTGGTCCTaGTTGAGGATGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCAIWS*LRMRQA
Trigger: TGCCTGCCTCATCCTCAATCAGGACCAGATGGCGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCAGAGTGTCAATCATaGACTCCGGTGCCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPECQS*TPVPSA
Trigger: TGCGCTGGGCACCGGAGTTCATGATTGACACTCTGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCAGAGTGTCAATCATaGACTCCGGTGCCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPECQS*TPVPSA
Trigger: TGCGCTGGGCACCGGAGTTCATGATTGACACTCTGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCAGCATTGAGGAGTaGAGGGATGGCTGCACAGCG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSSIEE*RDGCTA
Trigger: CGCTGTGCAGCCATCCCTTCACTCCTCAATGCTGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACTACAAGCAGCATTaGGGAGTGAAGGGATGGCTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHYKQH*GVKGWL
Trigger: CAGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCACTACAAGCAGCATTaGGGAGTGAAGGGATGGCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHYKQH*GVKGWL
Trigger: CAGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAAGAGCCCAGGTGCTaGCCCTTTTCCAGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQEEPRC*PFSSSS
Trigger: GGAGGAACTGGAAAAGGGTCAGCACCTGGGCTCTTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCCCCCAAGTCCTTCTaGAGCTTCTTCACCAGGTTC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSPKSF*SFFTRF
Trigger: GAACCTGGTGAAGAAGCTTCAGAAGGACTTGGGGGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTTCTCCAGACTGTCTaGTTGGCGCTCCCCCAAGTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLLQTV*LALPQV
Trigger: GACTTGGGGGAGCGCCAATCAGACAGTCTGGAGAAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTTCTCCAGACTGTCTaGTTGGCGCTCCCCCAAGTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLLQTV*LALPQV
Trigger: GACTTGGGGGAGCGCCAATCAGACAGTCTGGAGAAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTGGCTCACAGGTTATaGCATCTCGGTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVAHRL*HLGSAW
Trigger: CCAAGCAGAACCGAGATGTCATAACCTGTGAGCCAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGAACTAGGGGTCATCTaGTGGACAGATGACTGTCCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYELGVI*WTDDCP
Trigger: GGGACAGTCATCTGTCCATCAGATGACCCCTAGTTC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACAGCCTCCACTTCCTaGAGGCCCTGGCCGATAGTA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTASTS*RPWPIV
Trigger: TACTATCGGCCAGGGCCTGCAGGAAGTGGAGGCTGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACAGCCTCCACTTCCTaGAGGCCCTGGCCGATAGTA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTASTS*RPWPIV
Trigger: TACTATCGGCCAGGGCCTGCAGGAAGTGGAGGCTGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCATGAGATGAGTGGCTaGTCACACCATCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHEMSG*SHHPAG
Trigger: TCCAGCTGGATGGTGTGAGCAGCCACTCATCTCATG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGCGAACCTCAACTaGTTGTCCACGCTCCTTGAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPANLN*LSTLLD
Trigger: ATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCAGCGAACCTCAACTaGTTGTCCACGCTCCTTGAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPANLN*LSTLLD
Trigger: ATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTAGCTTGCTGCTGCTaGTGCCTTCAGCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLACCC*CLQPPC
Trigger: GCAAGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTAGCTTGCTGCTGCTaGTGCCTTCAGCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLACCC*CLQPPC
Trigger: GCAAGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCTCTAGCTTGCTGCTaGTGCTGCCTTCAGCCTCCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPLACC*CCLQPP
Trigger: AGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCTCTAGCTTGCTGCTaGTGCTGCCTTCAGCCTCCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPLACC*CCLQPP
Trigger: AGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGTCCTCTAGCTTGCTaGTGCTGCTGCCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGPLAC*CCCLQP
Trigger: AGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGGACC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGTCCTCTAGCTTGCTaGTGCTGCTGCCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGPLAC*CCCLQP
Trigger: AGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGGACC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCGGGCATCATCTCGCTaGTTCCCCACCCCAAACAGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRASSR*FPTPNS
Trigger: ACTGTTTGGGGTGGGGAAGCAGCGAGATGATGCCCG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCGAAGCTCGTGATCTaGTCCAGAACGTTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQAKLVI*SRTFRE
Trigger: CTCCCGGAACGTTCTGGAGCAGATCACGAGCTTCGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTCGAAGATGAACTaGACATGCTGCACCAGAGGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRSKMN*TCCTRG
Trigger: GCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGCACTCAAGGACTTaGAATAGCCGGTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQHSRT*NSRSAL
Trigger: CAGAGCTGACCGGCTATTGCAAGTCCTTGAGTGCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTTTGGTCTTGCTGCTaGTGGGCATGTTGCTTGCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVWSCC*WACCLL
Trigger: CAGCAAGCAACATGCCCAGCAGCAGCAAGACCAAAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTTTGGTCTTGCTGCTaGTGGGCATGTTGCTTGCTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVWSCC*WACCLL
Trigger: CAGCAAGCAACATGCCCAGCAGCAGCAAGACCAAAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTTTGGTCTTGCTaGTGCTGGGCATGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQVWSC*CWACCL
Trigger: CAAGCAACATGCCCAGCAGCAGCAAGACCAAACCTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGGTTTGGTCTTGCTaGTGCTGGGCATGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQVWSC*CWACCL
Trigger: CAAGCAACATGCCCAGCAGCAGCAAGACCAAACCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGGGTACTACGCTaGACAGTGTCAAACATGCCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCWVLR*TVSNMP
Trigger: GGGCATGTTTGACACTGTGCAGCGTAGTACCCAGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGCTGTTGTTGTTaGTGCTGCTCAGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*CCSGRM
Trigger: CATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGCTGTTGTTGTTaGTGCTGCTCAGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCCC*CCSGRM
Trigger: CATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGCTGCTGCTGTTaGTGTCGGATATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCCC*CRIWYC
Trigger: GCAGTACCATATCCGACAGCAACAGCAGCAGCAGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGCTGCTGCTGTTaGTGTCGGATATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*CRIWYC
Trigger: GCAGTACCATATCCGACAGCAACAGCAGCAGCAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCATCTGCTGCTGCTaGTGTTGCTGTCGGATATGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSICCC*CCCRIW
Trigger: CCATATCCGACAGCAACAGCAGCAGCAGCAGATGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCATCTGCTGCTGCTaGTGTTGCTGTCGGATATGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSICCC*CCCRIW
Trigger: CCATATCCGACAGCAACAGCAGCAGCAGCAGATGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCCGTAGCATCTGCTaGTGCTGCTGTTGCTGTCGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCRSIC*CCCCCR
Trigger: CCGACAGCAACAGCAGCAGCAGCAGATGCTACGGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTGCCGTAGCATCTaGTGCTGCTGCTGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCRSI*CCCCCC
Trigger: ACAGCAACAGCAGCAGCAGCAGATGCTACGGCAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTGTTGCTGCTGTTaGCGTAGCATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*RSICCC
Trigger: GCAGCAGCAGATGCTACGGCAACAGCAGCAACAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGTGTGGCTGCTGCTaGTGCTGTTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWCGCC*CCCCCC
Trigger: ACAACAACAGCAACAGCAGCAGCAGCAGCCACACCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGTGTGGCTGCTGCTaGTGCTGTTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYWCGCC*CCCCCC
Trigger: ACAACAACAGCAACAGCAGCAGCAGCAGCCACACCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTTGCTGCTGCTGCTaGCGTAGCATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCCC*RSICCC
Trigger: GCAGCAGCAGATGCTACGGCAGCAGCAGCAGCAACA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGAGCAATAGGCAGGTaGTCAAGTGGTGAGCCGGTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGAIGR*SSGEPV
Trigger: GACCGGCTCACCACTTGACCACCTGCCTATTGCTCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGGGATCAGTCAGCATaGGAGCCTGTGTATCCAGAA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGDQSA*EPVYPE
Trigger: TTCTGGATACACAGGCTCCCATGCTGACTGATCCCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGGATCAGTCAGCATaGGAGCCTGTGTATCCAGAA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGDQSA*EPVYPE
Trigger: TTCTGGATACACAGGCTCCCATGCTGACTGATCCCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTACGACCAACCGCTaGTTGCACTCATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTTNR*LHSWLH
Trigger: ATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGTACGACCAACCGCTaGTTGCACTCATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSTTNR*LHSWLH
Trigger: ATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAAATATCTTCAGCAGTaGGGAAGGCTTCGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVKYLQQ*GRLRAG
Trigger: ACCGGCCCGAAGCCTTCCCCACTGCTGAAGATATTT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCACCAGAGGCAAGTaGTACGACATGCCAAGGGCG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCTRGK*YDMPRA
Trigger: CGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCACCAGAGGCAAGTaGTACGACATGCCAAGGGCG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCTRGK*YDMPRA
Trigger: CGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTATCAGGATCATGGTaGCCCACGCAGACGTGCATA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLSGSW*PTQTCI
Trigger: TATGCACGTCTGCGTGGGCCACCATGATCCTGATAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTTGCATGAGGCGCTaGGCCTGGGCACTACTCAAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSCMRR*AWALLN
Trigger: GTTGAGTAGTGCCCAGGCCCAGCGCCTCATGCAACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTAATGCGCTGCCGCTaGGGGTTTTCTCCATCCTCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLMRCR*GFSPSS
Trigger: TGAGGATGGAGAAAACCCCCAGCGGCAGCGCATTAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCTCCAAAGAGGACTaGCGCATGGTCCATTGGTCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSSKED*RMVHWS
Trigger: AGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGTCTTGCTGCTGCTaGGCATGTTGCTTGCTGTAC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWSCCC*ACCLLY
Trigger: GTACAGCAAGCAACATGCCCAGCAGCAGCAAGACCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACTCTGTAGTCTGCTaGGTACTACGCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHSVVC*VLRCTV
Trigger: CACTGTGCAGCGTAGTACCCAGCAGACTACAGAGTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCACTCTGTAGTCTGCTaGGTACTACGCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHSVVC*VLRCTV
Trigger: CACTGTGCAGCGTAGTACCCAGCAGACTACAGAGTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCCTTGCGAGATACTaGACATGTCTGCAGCCAACG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCLARY*TCLQPT
Trigger: CGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGTTTGTCAGTCTTaGGGGGCTCAGGAGCCTTTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLVCQS*GAQEPF
Trigger: AAAAGGCTCCTGAGCCCCCCAAGACTGACAAACCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGGTTTGTCAGTCTTaGGGGGCTCAGGAGCCTTTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLVCQS*GAQEPF
Trigger: AAAAGGCTCCTGAGCCCCCCAAGACTGACAAACCAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTCCTCGTTCTTGGTaGCTGGCTGGCTGCGTTTTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSPRSW*LAGCVF
Trigger: AAAAACGCAGCCAGCCAGCCACCAAGAACGAGGACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGTAGTGGCTGGTTTTaGGTATACAGGCCCATGGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGSGWF*VYRPME
Trigger: CTCCATGGGCCTGTATACCCAAAACCAGCCACTACC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCTGCTCAGGCAGGATaGAAGTTGAACGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAAQAG*KLNGRL
Trigger: CAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTGCTGGGCTGTGGCTaGGTATTAGAGAGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVLGCG*VLESCC
Trigger: ACAACAGCTCTCTAATACCCAGCCACAGCCCAGCAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTGCTGGGCTGTGGCTaGGTATTAGAGAGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVLGCG*VLESCC
Trigger: ACAACAGCTCTCTAATACCCAGCCACAGCCCAGCAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCAGCATTCCATCCTaGAACATGAACAAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSSIPS*NMNKAS
Trigger: GCTCGCCTTGTTCATGTTTCAGGATGGAATGCTGGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCTATGACATGAGATaGGTGGCTGCTCACACCATC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSYDMR*VAAHTI
Trigger: GATGGTGTGAGCAGCCACTCATCTCATGTCATAGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGCAGAGAACTTGTTaGCTGAGCAGCTATGACATG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGQRTC*LSSYDM
Trigger: CATGTCATAGCTGCTCAGTCAACAAGTTCTCTGCCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTGGTCAAGTGGTaGGCCGGTCTTAATTCGGCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQVVKW*AGLNSA
Trigger: AGCCGAATTAAGACCGGCTCACCACTTGACCACCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCAGAGGAAATCTCATaGCCATCCTTACTAGGCCCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSEEIS*PSLLGP
Trigger: GGGGCCTAGTAAGGATGGTCATGAGATTTCCTCTGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCAGAGGAAATCTCATaGCCATCCTTACTAGGCCCC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSEEIS*PSLLGP
Trigger: GGGGCCTAGTAAGGATGGTCATGAGATTTCCTCTGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGGAGACCTGAGCCGTaGCCTGGTGTTGGTCATAAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGRPEP*PGVGHN
Trigger: ATTATGACCAACACCAGGTCACGGCTCAGGTCTCCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCTAGGAGCAAACATTaGCGGGCGATGAGGATAGCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSRSKH*RAMRIA
Trigger: TGCTATCCTCATCGCCCGTCAATGTTTGCTCCTAGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCTATCCTCACACAGTaGCTTAAGGCAACGTTCTCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAILTQ*LKATFS
Trigger: GGAGAACGTTGCCTTAAGTCACTGTGTGAGGATAGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTGGGGGTCTGCTTaGTCATCAACTGTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCWGSA*SSTVAP
Trigger: TGGAGCTACAGTTGATGATCAAGCAGACCCCCAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTAGACCCTCCTTCTTaGAGATGGAATCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVDPPS*RWNRSQ
Trigger: CTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTAGACCCTCCTTCTTaGAGATGGAATCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVDPPS*RWNRSQ
Trigger: CTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCATTAGGGACTTCCTaGGACCAGTGTCAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSLGTS*DQCQRE
Trigger: CTCTCTCTGACACTGGTCGCAGGAAGTCCCTAATGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCATTAGGGACTTCCTaGGACCAGTGTCAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSLGTS*DQCQRE
Trigger: CTCTCTCTGACACTGGTCGCAGGAAGTCCCTAATGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCCGACCTGAGCGTTTaGAGCTTACAGCCCATTCAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQADLSV*SLQPIH
Trigger: GTGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCCCTTCTCATCAGCTaGTTCAGATTCTCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQALLIS*FRFSAA
Trigger: CGCTGCGGAGAATCTGAAGCAGCTGATGAGAAGGGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTGTGGCATACTaGACATGTCGTGGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYKCVAY*TCRGWS
Trigger: TGACCAGCCACGACATGTGCAGTATGCCACACACTT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGCTHG*MTPPVG
Trigger: TCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGCTHG*MTPPVG
Trigger: TCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCGACCAACCGCTGGTTaGACTCATGGCTGCATGACT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRPTAG*THGCMT
Trigger: AGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGCGTCGTCGCTTCTaGCCATCTTCCCCACCTAAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLRRRF*PSSPPK
Trigger: CTTAGGTGGGGAAGATGGGCAGAAGCGACGACGCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGCGTCGTCGCTTCTaGCCATCTTCCCCACCTAAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLRRRF*PSSPPK
Trigger: CTTAGGTGGGGAAGATGGGCAGAAGCGACGACGCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGAACTGCACATGCTaGACCAGAGGCAAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYMNCTC*TRGKWY
Trigger: GTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAATGAACTGCACATGCTaGACCAGAGGCAAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVMNCTC*TRGKWY
Trigger: GTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCAT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAATTCCTGTTGGCAGATaGTTCGCAGCACGTACTTGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVIPVGR*FAARTW
Trigger: CCAAGTACGTGCTGCGAAGCATCTGCCAACAGGAAT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATACGTTTAATGCGCTaGCGCTGGGGGTTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYIRLMR*RWGFSP
Trigger: TGGAGAAAACCCCCAGCGGCAGCGCATTAAACGTAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGCTGGGCATGTTaGTTGCTGTACTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCWAC*LLYFQK
Trigger: CTTCTGGAAGTACAGCAAGCAACATGCCCAGCAGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCACAGGTTTGGTCTTaGTGCTGCTGGGCATGTTGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAQVWS*CCWACC
Trigger: GCAACATGCCCAGCAGCAGCAAGACCAAACCTGTGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGGAGTCCCTCGCGCTaGTCATCCTGTCCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRSPSR*SSCPFR
Trigger: TCTGAAAGGACAGGATGAGCAGCGCGAGGGACTCCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTAATCACAATCTGGTaGACCTGGCTGTGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLITIW*TWLWRE
Trigger: CTCCCTCCACAGCCAGGTGCACCAGATTGTGATTAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCCCACTCTGTAGTCTaGTGGGTACTACGCTGCACA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQAHSVV*WVLRCT
Trigger: TGTGCAGCGTAGTACCCAGCAGACTACAGAGTGGGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCCCACTCTGTAGTCTaGTGGGTACTACGCTGCACA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAHSVV*WVLRCT
Trigger: TGTGCAGCGTAGTACCCAGCAGACTACAGAGTGGGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCTCATTGTTAGACTaGATGTCCACAGTGCCGCTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSSLLD*MSTVPL
Trigger: CAGCGGCACTGTGGACATGCAGTCTAACAATGAGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCTCATTGTTAGACTaGATGTCCACAGTGCCGCTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSSLLD*MSTVPL
Trigger: CAGCGGCACTGTGGACATGCAGTCTAACAATGAGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCCTCCATGCTGCCTTaGGAGATACTGGACATGTCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSSMLP*EILDMS
Trigger: AGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCTCCATGCTGCCTTaGGAGATACTGGACATGTCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSSMLP*EILDMS
Trigger: AGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGCACTGTGGGTTGCTaGTGCCGGTATACAGATGTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGTVGC*CRYTDV
Trigger: GACATCTGTATACCGGCAGCAGCAACCCACAGTGCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGCACTGTGGGTTGCTaGTGCCGGTATACAGATGTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGTVGC*CRYTDV
Trigger: GACATCTGTATACCGGCAGCAGCAACCCACAGTGCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGGGGCACTGTGGGTTaGTGCTGCCGGTATACAGAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQWGTVG*CCRYTD
Trigger: ATCTGTATACCGGCAGCAGCAACCCACAGTGCCCCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGGGCACTGTGGGTTaGTGCTGCCGGTATACAGAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWGTVG*CCRYTD
Trigger: ATCTGTATACCGGCAGCAGCAACCCACAGTGCCCCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGACTCTGTATCTTTaGCTGGAGCTGTTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLTLYL*LELLAK
Trigger: CTTCGCCAACAGCTCCAGGCAAAGATACAGAGTCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGTTGTTGTTGCTaGTGCTCAGGCAGGATGGAA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCCC*CSGRME
Trigger: TTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGTTGTTGTTGCTaGTGCTCAGGCAGGATGGAA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*CSGRME
Trigger: TTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTACTGCTGTTGTTGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYYCCCC*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGTA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATACTGCTGTTGTTGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVYCCCC*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGTA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGTTGCTGTTGTTGCTaGTGTTGCCGTAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCCC*CCRSIC
Trigger: GCAGATGCTACGGCAACAGCAGCAACAACAGCAACA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGTTGCTGTTGTTaGTGCTGTTGCCGTAGCATC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*CCCRSI
Trigger: GATGCTACGGCAACAGCAGCAACAACAGCAACAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAAGCTGCTGTCTGTTaGTGCTGCTGGGTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQKAAVC*CCWVCC
Trigger: GCAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTCCAAATATGTTGGTaGTGGGCTGTGGCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVQICW*WAVAGY
Trigger: ATACCCAGCCACAGCCCAGCACCAACATATTTGGAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACTTCCTGCAGGCCCTaGCCGATAGTACTCAGCCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTSCRP*PIVLSH
Trigger: ATGGCTGAGTACTATCGGCCAGGGCCTGCAGGAAGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTCACACCATCCAGCTaGAGAGCCAATCTCCGGGTA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLTPSS*RANLRV
Trigger: TACCCGGAGATTGGCTCTCCAGCTGGATGGTGTGAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGCACTGTTACCCTCTaGCATGGGCAAGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGTVTL*HGQVGR
Trigger: CCTTCCAACTTGCCCATGCCAGAGGGTAACAGTGCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCAGGAGGACATCCTaGAAAATGGGTGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCRRTS*KMGALG
Trigger: TCCTAGTGCACCCATTTTCCAGGATGTCCTCCTGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGGTTTCTCAGGGGATaGGCTTCCCTTCCCCTCACA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQWFLRG*ASLPLT
Trigger: TGTGAGGGGAAGGGAAGCCCATCCCCTGAGAAACCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGTTTCTCAGGGGATaGGCTTCCCTTCCCCTCACA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWFLRG*ASLPLT
Trigger: TGTGAGGGGAAGGGAAGCCCATCCCCTGAGAAACCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCCTCCTGTGGGATTaGAAAGTGTGTGGCATACTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLLLWD*KVCGIL
Trigger: CAGTATGCCACACACTTTCCAATCCCACAGGAGGAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCTCCTGTGGGATTaGAAAGTGTGTGGCATACTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLLLWD*KVCGIL
Trigger: CAGTATGCCACACACTTTCCAATCCCACAGGAGGAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTGCCCAGCGCATATTaGATTCCGATGGCTCCACGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVPSAY*IPMAPR
Trigger: ACGTGGAGCCATCGGAATCCAATATGCGCTGGGCAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCAAGGATTGAGTTGTaGCGTCTTGAACAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVARIEL*RLEQVE
Trigger: CTCCACCTGTTCAAGACGCCACAACTCAATCCTTGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCGATTGTGGCCTTaGCAATGTTCTCCAAGAGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPRLWP*QCSPRE
Trigger: CTCTCTTGGAGAACATTGCCAAGGCCACAATCGAGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTCTCTGCTGACTGTTaGAAAACCTCGATTGTGGCC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVSADC*KTSIVA
Trigger: GGCCACAATCGAGGTTTTCCAACAGTCAGCAGAGAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCCAGACTGTCTGATTaGCGCTCCCCCAAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSRLSD*RSPKSF
Trigger: GAAGGACTTGGGGGAGCGCCAATCAGACAGTCTGGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCATAGTCCTCGTTCTTaGTGGCTGGCTGGCTGCGTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHSPRS*WLAGCV
Trigger: AACGCAGCCAGCCAGCCACCAAGAACGAGGACTATG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATAGTCCTCGTTCTTaGTGGCTGGCTGGCTGCGTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHSPRS*WLAGCV
Trigger: AACGCAGCCAGCCAGCCACCAAGAACGAGGACTATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAACCAGGATTTGCATaGTGTAGAAGGTCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVEPGFA*CRRSGG
Trigger: GCCTCCAGACCTTCTACACCATGCAAATCCTGGTTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCAGCAGGTAGTGGCTaGTTTTGGGTATACAGGCCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPAGSG*FWVYRP
Trigger: GGGCCTGTATACCCAAAACCAGCCACTACCTGCTGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCAGCAGGTAGTGGCTaGTTTTGGGTATACAGGCCC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPAGSG*FWVYRP
Trigger: GGGCCTGTATACCCAAAACCAGCCACTACCTGCTGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCATGGTACCCATCATaGGTGTCTGCTGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSWYPS*VSAAVS
Trigger: AGACACTGCAGCAGACACCCATGATGGGTACCATGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCATGGTACCCATCATaGGTGTCTGCTGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSWYPS*VSAAVS
Trigger: AGACACTGCAGCAGACACCCATGATGGGTACCATGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTTGGTGCTGGGCTGTaGCTGGGTATTAGAGAGCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVGAGL*LGIREL
Trigger: CAGCTCTCTAATACCCAGCCACAGCCCAGCACCAAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCGTCCAAATATGTTaGTGCTGGGCTGTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSVQIC*CWAVAG
Trigger: CCCAGCCACAGCCCAGCACCAACATATTTGGACGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTCTGTTTGGGATCTTaGGGGTACACATCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFCLGS*GYTSGG
Trigger: GCCTCCCGATGTGTACCCTCAAGATCCCAAACAGAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTGTTAATAGCACTCTaGGATCTTGCAGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVLIAL*DLAVTS
Trigger: GCTGGTGACTGCAAGATCTCAGAGTGCTATTAACAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTGTTAATAGCACTCTaGGATCTTGCAGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVLIAL*DLAVTS
Trigger: GCTGGTGACTGCAAGATCTCAGAGTGCTATTAACAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGTAATCCCACTGCCTaGTGGCCATCTCTACATCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCNPTA*WPSLHH
Trigger: ATGATGTAGAGATGGCCATCAGGCAGTGGGATTACA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTAATCCCACTGCCTaGTGGCCATCTCTACATCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCNPTA*WPSLHH
Trigger: ATGATGTAGAGATGGCCATCAGGCAGTGGGATTACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCTGAAGGATACAGCTaGGGCCAAAAACCAGGGGAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSEGYS*GQKPGD
Trigger: GTCCCCTGGTTTTTGGCCTCAGCTGTATCCTTCAGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCACAGAAGGATGGTCTaGAGGATACAGCTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHRRMV*RIQLRP
Trigger: TGGCCTCAGCTGTATCCTTCAGACCATCCTTCTGTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTTGCACGGACCTGCTaGGTAAAGGCACTGTTACCC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFARTC*VKALLP
Trigger: GGGTAACAGTGCCTTTACTCAGCAGGTCCGTGCAAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCACTGATGCTCAGTaGATATTCCATGAGGTCGAA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVATDAQ*IFHEVE
Trigger: TTCGACCTCATGGAATATTCACTGAGCATCAGTGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCACTGATGCTCAGTaGATATTCCATGAGGTCGAA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYATDAQ*IFHEVE
Trigger: TTCGACCTCATGGAATATTCACTGAGCATCAGTGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCAGAGGAGCCATCTaGACGGTTCATTCCATGTTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCRGAI*TVHSMF
Trigger: AAACATGGAATGAACCGTTCAGATGGCTCCTCTGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCACTACAAGCAGCATTaGGGAGTGAAGGGATGGCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHYKQH*GVKGWL
Trigger: CAGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCCCCCAAGTCCTTCTaGAGCTTCTTCACCAGGTTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSPKSF*SFFTRF
Trigger: GAACCTGGTGAAGAAGCTTCAGAAGGACTTGGGGGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCCCCCAAGTCCTTCTaGAGCTTCTTCACCAGGTTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSPKSF*SFFTRF
Trigger: GAACCTGGTGAAGAAGCTTCAGAAGGACTTGGGGGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTGGCTCACAGGTTATaGCATCTCGGTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVAHRL*HLGSAW
Trigger: CCAAGCAGAACCGAGATGTCATAACCTGTGAGCCAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTGGCTCACAGGTTATaGCATCTCGGTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVAHRL*HLGSAW
Trigger: CCAAGCAGAACCGAGATGTCATAACCTGTGAGCCAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCATCTGATGGACAGATaGCTGTCCCAACATCCCCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHLMDR*LSQHPL
Trigger: CAGGGGATGTTGGGACAGTCATCTGTCCATCAGATG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATCTGATGGACAGATaGCTGTCCCAACATCCCCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHLMDR*LSQHPL
Trigger: CAGGGGATGTTGGGACAGTCATCTGTCCATCAGATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGAACTAGGGGTCATCTaGTGGACAGATGACTGTCCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKELGVI*WTDDCP
Trigger: GGGACAGTCATCTGTCCATCAGATGACCCCTAGTTC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGTGTGAAAACCTTTaGGTGGAAGTCAGTCCATGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYWCENL*VEVSPC
Trigger: GCATGGACTGACTTCCACTCAAAGGTTTTCACACCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGTGTGAAAACCTTTaGGTGGAAGTCAGTCCATGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWCENL*VEVSPC
Trigger: GCATGGACTGACTTCCACTCAAAGGTTTTCACACCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCAGTGTCTGGTGTaGAAACCTTTGAGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLQCLV*KPLSGS
Trigger: ACTTCCACTCAAAGGTTTTCACACCAGACACTGCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTAGAGAGCTGTTGTTaGAGTTGCCGGACCAAAGCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLESCC*SCRTKA
Trigger: AGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTAGAGAGCTGTTGTTaGAGTTGCCGGACCAAAGCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLESCC*SCRTKA
Trigger: AGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCACTCTGAGATCTTaGAGTCACCAGCCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTLRS*SHQPEV
Trigger: AACTTCTGGCTGGTGACTGCAAGATCTCAGAGTGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCATCTTCTGTAGCTaGTCCCACAAGTACTTTGTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAIFCS*SHKYFV
Trigger: CACAAAGTACTTGTGGGAGCAGCTACAGAAGATGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATGAGATGAGTGGCTaGTCACACCATCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHEMSG*SHHPAG
Trigger: TCCAGCTGGATGGTGTGAGCAGCCACTCATCTCATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCAGCGAACCTCAACTaGTTGTCCACGCTCCTTGAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPANLN*LSTLLD
Trigger: ATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCCAATGGTGAAACCTaGAGTAGCTTCCTGGCACTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSNGET*SSFLAL
Trigger: AAGTGCCAGGAAGCTACTGCAGGTTTCACCATTGGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACTACCATAGCACGATaGCGACCTGAGCGTTTGCAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTTIAR*RPERLQ
Trigger: CTGCAAACGCTCAGGTCGGCATCGTGCTATGGTAGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACTACCATAGCACGATaGCGACCTGAGCGTTTGCAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTTIAR*RPERLQ
Trigger: CTGCAAACGCTCAGGTCGGCATCGTGCTATGGTAGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGGTCGAAGATGAACTaGACATGCTGCACCAGAGGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKRSKMN*TCCTRG
Trigger: GCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAATCATGAACTCCGGTaGCCAGCGCATATTGGATTC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVNHELR*PAHIGF
Trigger: GAATCCAATATGCGCTGGGCACCGGAGTTCATGATT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAATCATGAACTCCGGTaGCCAGCGCATATTGGATTC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYNHELR*PAHIGF
Trigger: GAATCCAATATGCGCTGGGCACCGGAGTTCATGATT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATAGCCGGTCAGCTCTaGACAAAGGATGGCGATGTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKIAGQL*TKDGDV
Trigger: GACATCGCCATCCTTTGTGCAGAGCTGACCGGCTAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATAGCCGGTCAGCTCTaGACAAAGGATGGCGATGTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIAGQL*TKDGDV
Trigger: GACATCGCCATCCTTTGTGCAGAGCTGACCGGCTAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCACTCAAGGACTTaGAATAGCCGGTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQHSRT*NSRSAL
Trigger: CAGAGCTGACCGGCTATTGCAAGTCCTTGAGTGCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGCACTCAAGGACTTaGAATAGCCGGTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQHSRT*NSRSAL
Trigger: CAGAGCTGACCGGCTATTGCAAGTCCTTGAGTGCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTTTGGTCTTGCTGCTaGTGGGCATGTTGCTTGCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVWSCC*WACCLL
Trigger: CAGCAAGCAACATGCCCAGCAGCAGCAAGACCAAAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGGTTTGGTCTTGCTaGTGCTGGGCATGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQVWSC*CWACCL
Trigger: CAAGCAACATGCCCAGCAGCAGCAAGACCAAACCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGCTCAACAGGGACATaGTCTTCTGTTTCTGTCGAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGSTGT*SSVSVD
Trigger: ATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGGGTACTACGCTaGACAGTGTCAAACATGCCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCWVLR*TVSNMP
Trigger: GGGCATGTTTGACACTGTGCAGCGTAGTACCCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTTTCCTCCATGCTaGCTTGCGAGATACTGGACA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCFPPC*LARYWT
Trigger: TGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGACATCTCGGTTCTaGTTGGGTAGTGGCAACAGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYMTSRF*LGSGNS
Trigger: ACTGTTGCCACTACCCAAGCAGAACCGAGATGTCAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATCATGGGTGTCTGCTaGAGTGTCTGGTGTGAAAAC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYIMGVC*SVWCEN
Trigger: GTTTTCACACCAGACACTGCAGCAGACACCCATGAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGTTGTTGTTGCTGCTaGTCAGGCAGGATGGAAGTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCCC*SGRMEV
Trigger: AACTTCCATCCTGCCTGAGCAGCAGCAACAACAACA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTTGTTGTTGCTGCTaGTCAGGCAGGATGGAAGTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCCCCC*SGRMEV
Trigger: AACTTCCATCCTGCCTGAGCAGCAGCAACAACAACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGCTGTTGTTGTTaGTGCTGCTCAGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCCC*CCSGRM
Trigger: CATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGCTGTTGTTGTTaGTGCTGCTCAGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCCC*CCSGRM
Trigger: CATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGCTGCTGCTGTTaGTGTCGGATATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCCC*CRIWYC
Trigger: GCAGTACCATATCCGACAGCAACAGCAGCAGCAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGCTGCTGCTGTTaGTGTCGGATATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCCC*CRIWYC
Trigger: GCAGTACCATATCCGACAGCAACAGCAGCAGCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCATCTGCTGCTGCTaGTGTTGCTGTCGGATATGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSICCC*CCCRIW
Trigger: CCATATCCGACAGCAACAGCAGCAGCAGCAGATGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCATCTGCTGCTGCTaGTGTTGCTGTCGGATATGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSICCC*CCCRIW
Trigger: CCATATCCGACAGCAACAGCAGCAGCAGCAGATGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTTGCCGTAGCATCTaGTGCTGCTGCTGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCRSI*CCCCCC
Trigger: ACAGCAACAGCAGCAGCAGCAGATGCTACGGCAACA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTTGTTGCTGCTGTTaGCGTAGCATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCCC*RSICCC
Trigger: GCAGCAGCAGATGCTACGGCAACAGCAGCAACAACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGTGTGGCTGCTGCTaGTGCTGTTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWCGCC*CCCCCC
Trigger: ACAACAACAGCAACAGCAGCAGCAGCAGCCACACCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGGTGTGGCTGCTGCTaGTGCTGTTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQWCGCC*CCCCCC
Trigger: ACAACAACAGCAACAGCAGCAGCAGCAGCCACACCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCATCTCTACATCATaGGGCAAAGGCCCTATAGTA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAISTS*GKGPIV
Trigger: TACTATAGGGCCTTTGCCCCATGATGTAGAGATGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCATCTCTACATCATaGGGCAAAGGCCCTATAGTA +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYAISTS*GKGPIV
Trigger: TACTATAGGGCCTTTGCCCCATGATGTAGAGATGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGCAGTAGCTTCCTaGCACTTATCAAAAGACCAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPAVAS*HLSKDQ
Trigger: CTGGTCTTTTGATAAGTGCCAGGAAGCTACTGCAGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCTGCAGTAGCTTCCTaGCACTTATCAAAAGACCAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPAVAS*HLSKDQ
Trigger: CTGGTCTTTTGATAAGTGCCAGGAAGCTACTGCAGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCACTTCTAAAGTATaGAGCACCCGTCCAATGGTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSTSKV*STRPMV
Trigger: CACCATTGGACGGGTGCTCCATACTTTAGAAGTGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGGGATCAGTCAGCATaGGAGCCTGTGTATCCAGAA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGDQSA*EPVYPE
Trigger: TTCTGGATACACAGGCTCCCATGCTGACTGATCCCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTCCTTTTCGACATCTaGTTTCTCAGGGGATGGGCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVFLFDI*FLRGWA
Trigger: AGCCCATCCCCTGAGAAACCAGATGTCGAAAAGGAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCCTTTTCGACATCTaGTTTCTCAGGGGATGGGCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFLFDI*FLRGWA
Trigger: AGCCCATCCCCTGAGAAACCAGATGTCGAAAAGGAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCTCGATCTTCTCTTTaGCTGGGGGTTTTACTTCCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPRSSL*LGVLLP
Trigger: AGGAAGTAAAACCCCCAGCCAAAGAGAAGATCGAGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCGATCTTCTCTTTaGCTGGGGGTTTTACTTCCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPRSSL*LGVLLP
Trigger: AGGAAGTAAAACCCCCAGCCAAAGAGAAGATCGAGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTACGACCAACCGCTaGTTGCACTCATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTTNR*LHSWLH
Trigger: ATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATCTTCTTGATGGCATaGCGGGCATCATCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKIFLMA*RASSRC
Trigger: GCAGCGAGATGATGCCCGCCATGCCATCAAGAAGAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATCTTCTTGATGGCATaGCGGGCATCATCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIFLMA*RASSRC
Trigger: GCAGCGAGATGATGCCCGCCATGCCATCAAGAAGAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAATATCTTCAGCAGTaGGGAAGGCTTCGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQKYLQQ*GRLRAG
Trigger: ACCGGCCCGAAGCCTTCCCCACTGCTGAAGATATTT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAAATATCTTCAGCAGTaGGGAAGGCTTCGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKKYLQQ*GRLRAG
Trigger: ACCGGCCCGAAGCCTTCCCCACTGCTGAAGATATTT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTATCAGGATCATGGTaGCCCACGCAGACGTGCATA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLSGSW*PTQTCI
Trigger: TATGCACGTCTGCGTGGGCCACCATGATCCTGATAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTATCAGGATCATGGTaGCCCACGCAGACGTGCATA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLSGSW*PTQTCI
Trigger: TATGCACGTCTGCGTGGGCCACCATGATCCTGATAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCGCAGCACGTACTTaGCATAGACATCCAGACTTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFAART*HRHPDL
Trigger: CAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTCGCAGCACGTACTTaGCATAGACATCCAGACTTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVFAART*HRHPDL
Trigger: CAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTCCAGCAGTCGATGTaGGTAGCAGATAAGTTGCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVQQSM*VADKLH
Trigger: ATGCAACTTATCTGCTACCCACATCGACTGCTGGAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTCCAGCAGTCGATGTaGGTAGCAGATAAGTTGCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVQQSM*VADKLH
Trigger: ATGCAACTTATCTGCTACCCACATCGACTGCTGGAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTAATGCGCTGCCGCTaGGGGTTTTCTCCATCCTCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLMRCR*GFSPSS
Trigger: TGAGGATGGAGAAAACCCCCAGCGGCAGCGCATTAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTAATGCGCTGCCGCTaGGGGTTTTCTCCATCCTCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLMRCR*GFSPSS
Trigger: TGAGGATGGAGAAAACCCCCAGCGGCAGCGCATTAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCTCCAAAGAGGACTaGCGCATGGTCCATTGGTCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSSKED*RMVHWS
Trigger: AGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCTCCAAAGAGGACTaGCGCATGGTCCATTGGTCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSSKED*RMVHWS
Trigger: AGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGTCTTGCTGCTGCTaGGCATGTTGCTTGCTGTAC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWSCCC*ACCLLY
Trigger: GTACAGCAAGCAACATGCCCAGCAGCAGCAAGACCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGGTCTTGCTGCTGCTaGGCATGTTGCTTGCTGTAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQWSCCC*ACCLLY
Trigger: GTACAGCAAGCAACATGCCCAGCAGCAGCAAGACCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGATAAGAAAGGCTGTTaGCTCAACAGGGACATGCTC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYDKKGC*LNRDML
Trigger: GAGCATGTCCCTGTTGAGCCAACAGCCTTTCTTATC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAATTAATCACAATCTaGTGCACCTGGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQLITI*CTWLWR
Trigger: CCTCCACAGCCAGGTGCACCAGATTGTGATTAATTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAATTAATCACAATCTaGTGCACCTGGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQLITI*CTWLWR
Trigger: CCTCCACAGCCAGGTGCACCAGATTGTGATTAATTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCACTCTGTAGTCTGCTaGGTACTACGCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHSVVC*VLRCTV
Trigger: CACTGTGCAGCGTAGTACCCAGCAGACTACAGAGTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCACTCTGTAGTCTGCTaGGTACTACGCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHSVVC*VLRCTV
Trigger: CACTGTGCAGCGTAGTACCCAGCAGACTACAGAGTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCCTTGCGAGATACTaGACATGTCTGCAGCCAACG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCLARY*TCLQPT
Trigger: CGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCCTTGCGAGATACTaGACATGTCTGCAGCCAACG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCLARY*TCLQPT
Trigger: CGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAATAAGGGAGCCCTGTaGCTCACAGGTTATGACATC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYNKGAL*LTGYDI
Trigger: GATGTCATAACCTGTGAGCCACAGGGCTCCCTTATT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAATAAGGGAGCCCTGTaGCTCACAGGTTATGACATC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVNKGAL*LTGYDI
Trigger: GATGTCATAACCTGTGAGCCACAGGGCTCCCTTATT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGGTTTGTCAGTCTTaGGGGGCTCAGGAGCCTTTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLVCQS*GAQEPF
Trigger: AAAAGGCTCCTGAGCCCCCCAAGACTGACAAACCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGTCCTCGTTCTTGGTaGCTGGCTGGCTGCGTTTTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSPRSW*LAGCVF
Trigger: AAAAACGCAGCCAGCCAGCCACCAAGAACGAGGACT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTCCTCGTTCTTGGTaGCTGGCTGGCTGCGTTTTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSPRSW*LAGCVF
Trigger: AAAAACGCAGCCAGCCAGCCACCAAGAACGAGGACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGTAGTGGCTGGTTTTaGGTATACAGGCCCATGGAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGSGWF*VYRPME
Trigger: CTCCATGGGCCTGTATACCCAAAACCAGCCACTACC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGTAGTGGCTGGTTTTaGGTATACAGGCCCATGGAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGSGWF*VYRPME
Trigger: CTCCATGGGCCTGTATACCCAAAACCAGCCACTACC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCCAGCATTCCATCCTaGAACATGAACAAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSSIPS*NMNKAS
Trigger: GCTCGCCTTGTTCATGTTTCAGGATGGAATGCTGGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCCAGCATTCCATCCTaGAACATGAACAAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSSIPS*NMNKAS
Trigger: GCTCGCCTTGTTCATGTTTCAGGATGGAATGCTGGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCTATGACATGAGATaGGTGGCTGCTCACACCATC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSYDMR*VAAHTI
Trigger: GATGGTGTGAGCAGCCACTCATCTCATGTCATAGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGGCAGAGAACTTGTTaGCTGAGCAGCTATGACATG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGQRTC*LSSYDM
Trigger: CATGTCATAGCTGCTCAGTCAACAAGTTCTCTGCCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGGCAGAGAACTTGTTaGCTGAGCAGCTATGACATG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGQRTC*LSSYDM
Trigger: CATGTCATAGCTGCTCAGTCAACAAGTTCTCTGCCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCAGAGGAAATCTCATaGCCATCCTTACTAGGCCCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSEEIS*PSLLGP
Trigger: GGGGCCTAGTAAGGATGGTCATGAGATTTCCTCTGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCACAGGAGATCATTaGAACCACAAGTGCCATTGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCTGDH*NHKCHC
Trigger: ACAATGGCACTTGTGGTTTCAATGATCTCCTGTGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCTAGGAGCAAACATTaGCGGGCGATGAGGATAGCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSRSKH*RAMRIA
Trigger: TGCTATCCTCATCGCCCGTCAATGTTTGCTCCTAGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCTAGGAGCAAACATTaGCGGGCGATGAGGATAGCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSRSKH*RAMRIA
Trigger: TGCTATCCTCATCGCCCGTCAATGTTTGCTCCTAGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCTATCCTCACACAGTaGCTTAAGGCAACGTTCTCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAILTQ*LKATFS
Trigger: GGAGAACGTTGCCTTAAGTCACTGTGTGAGGATAGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTTGGGGGTCTGCTTaGTCATCAACTGTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCWGSA*SSTVAP
Trigger: TGGAGCTACAGTTGATGATCAAGCAGACCCCCAACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTAGACCCTCCTTCTTaGAGATGGAATCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVDPPS*RWNRSQ
Trigger: CTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAAGTGTGTGGCATACTaGACATGTCGTGGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKKCVAY*TCRGWS
Trigger: TGACCAGCCACGACATGTGCAGTATGCCACACACTT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATGAACTGCACATGCTaGACCAGAGGCAAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQMNCTC*TRGKWY
Trigger: GTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATTCCTGTTGGCAGATaGTTCGCAGCACGTACTTGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIPVGR*FAARTW
Trigger: CCAAGTACGTGCTGCGAAGCATCTGCCAACAGGAAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATTCCTGTTGGCAGATaGTTCGCAGCACGTACTTGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKIPVGR*FAARTW
Trigger: CCAAGTACGTGCTGCGAAGCATCTGCCAACAGGAAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATACGTTTAATGCGCTaGCGCTGGGGGTTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIRLMR*RWGFSP
Trigger: TGGAGAAAACCCCCAGCGGCAGCGCATTAAACGTAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATACGTTTAATGCGCTaGCGCTGGGGGTTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKIRLMR*RWGFSP
Trigger: TGGAGAAAACCCCCAGCGGCAGCGCATTAAACGTAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGCTGGGCATGTTaGTTGCTGTACTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCWAC*LLYFQK
Trigger: CTTCTGGAAGTACAGCAAGCAACATGCCCAGCAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGCTGGGCATGTTaGTTGCTGTACTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCWAC*LLYFQK
Trigger: CTTCTGGAAGTACAGCAAGCAACATGCCCAGCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTAATCACAATCTGGTaGACCTGGCTGTGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLITIW*TWLWRE
Trigger: CTCCCTCCACAGCCAGGTGCACCAGATTGTGATTAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTAATCACAATCTGGTaGACCTGGCTGTGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLITIW*TWLWRE
Trigger: CTCCCTCCACAGCCAGGTGCACCAGATTGTGATTAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCTCATTGTTAGACTaGATGTCCACAGTGCCGCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSSLLD*MSTVPL
Trigger: CAGCGGCACTGTGGACATGCAGTCTAACAATGAGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGACTCTGTATCTTTaGCTGGAGCTGTTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLTLYL*LELLAK
Trigger: CTTCGCCAACAGCTCCAGGCAAAGATACAGAGTCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGTTGTTGTTGCTaGTGCTCAGGCAGGATGGAA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCCC*CSGRME
Trigger: TTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTACTGCTGTTGTTGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQYCCCC*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGTA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTTGCTGTTGTTGCTaGTGTTGCCGTAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCCC*CCRSIC
Trigger: GCAGATGCTACGGCAACAGCAGCAACAACAGCAACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGTTGCTGTTGTTaGTGCTGTTGCCGTAGCATC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCCC*CCCRSI
Trigger: GATGCTACGGCAACAGCAGCAACAACAGCAACAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTCCAAATATGTTGGTaGTGGGCTGTGGCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVQICW*WAVAGY
Trigger: ATACCCAGCCACAGCCCAGCACCAACATATTTGGAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTCCAAATATGTTGGTaGTGGGCTGTGGCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVQICW*WAVAGY
Trigger: ATACCCAGCCACAGCCCAGCACCAACATATTTGGAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCATCCTCCTTCTGTTTaGGATCTTGAGGGTACACAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHPPSV*DLEGTH
Trigger: ATGTGTACCCTCAAGATCCCAAACAGAAGGAGGATG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGAAGTTGTCCTTCTaGTTCATTAGGGACTTCCTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQKLSF*FIRDFL
Trigger: CAGGAAGTCCCTAATGAACCAGAAGGACAACTTCTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAGCGCTCGAAACTATaGCTATCCAGCACTTCTAAA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVERSKL*LSSTSK
Trigger: TTTAGAAGTGCTGGATAGCCATAGTTTCGAGCGCTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCAGGAGGACATCCTaGAAAATGGGTGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCRRTS*KMGALG
Trigger: TCCTAGTGCACCCATTTTCCAGGATGTCCTCCTGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTCCTCCTGTGGGATTaGAAAGTGTGTGGCATACTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLLLWD*KVCGIL
Trigger: CAGTATGCCACACACTTTCCAATCCCACAGGAGGAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCTCTGCACAAAGGATaGCGATGTCATTTACCCTAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYALHKG*RCHLPY
Trigger: ATAGGGTAAATGACATCGCCATCCTTTGTGCAGAGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCAAGGATTGAGTTGTaGCGTCTTGAACAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKARIEL*RLEQVE
Trigger: CTCCACCTGTTCAAGACGCCACAACTCAATCCTTGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTGTTTCCATCAGACTaGCAAGGATTGAGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLFPSD*QGLSCG
Trigger: GCCACAACTCAATCCTTGCCAGTCTGATGGAAACAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTGTTTCCATCAGACTaGCAAGGATTGAGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLFPSD*QGLSCG
Trigger: GCCACAACTCAATCCTTGCCAGTCTGATGGAAACAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGGACTGGCGCATaGTCCATTGGTCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYKRTGA*SIGLNS
Trigger: AGAATTTAGACCAATGGACCATGCGCCAGTCCTCTT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAAGAGGACTGGCGCATaGTCCATTGGTCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVKRTGA*SIGLNS
Trigger: AGAATTTAGACCAATGGACCATGCGCCAGTCCTCTT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCTCGATTGTGGCCTTaGCAATGTTCTCCAAGAGAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPRLWP*QCSPRE
Trigger: CTCTCTTGGAGAACATTGCCAAGGCCACAATCGAGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTCTCTGCTGACTGTTaGAAAACCTCGATTGTGGCC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVSADC*KTSIVA
Trigger: GGCCACAATCGAGGTTTTCCAACAGTCAGCAGAGAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTTAATACATGGCCCTaGACTGAAGTGGGCAGTTTG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFNTWP*TEVGSL
Trigger: CAAACTGCCCACTTCAGTCCAGGGCCATGTATTAAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAACCAGGATTTGCATaGTGTAGAAGGTCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQEPGFA*CRRSGG
Trigger: GCCTCCAGACCTTCTACACCATGCAAATCCTGGTTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTGAAAACCTTTGAGTaGAAGTCAGTCCATGCCCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVKTFE*KSVHAH
Trigger: ATGGGCATGGACTGACTTCCACTCAAAGGTTTTCAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTGAAAACCTTTGAGTaGAAGTCAGTCCATGCCCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVKTFE*KSVHAH
Trigger: ATGGGCATGGACTGACTTCCACTCAAAGGTTTTCAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCATGGTACCCATCATaGGTGTCTGCTGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSWYPS*VSAAVS
Trigger: AGACACTGCAGCAGACACCCATGATGGGTACCATGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCACTCAACGGAGTCATaGTACCCATCATGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHSTES*YPSWVS
Trigger: AGACACCCATGATGGGTACCATGACTCCGTTGAGTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCACTCAACGGAGTCATaGTACCCATCATGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHSTES*YPSWVS
Trigger: AGACACCCATGATGGGTACCATGACTCCGTTGAGTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGTTGCTGTCGGATATaGTACTGCTGTTGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCCCRI*YCCCCC
Trigger: GCAACAACAACAGCAGTACCATATCCGACAGCAACA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTGTTAATAGCACTCTaGGATCTTGCAGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVLIAL*DLAVTS
Trigger: GCTGGTGACTGCAAGATCTCAGAGTGCTATTAACAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTACTTTGTGATGATTTaGGTCCATTCAGTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYYFVMI*VHSVKG
Trigger: CCCCTTCACTGAATGGACTCAAATCATCACAAAGTA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATACTTTGTGATGATTTaGGTCCATTCAGTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVYFVMI*VHSVKG
Trigger: CCCCTTCACTGAATGGACTCAAATCATCACAAAGTA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTAATCCCACTGCCTaGTGGCCATCTCTACATCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCNPTA*WPSLHH
Trigger: ATGATGTAGAGATGGCCATCAGGCAGTGGGATTACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGTAGGGGAGAACAATaGGAAATCAGGCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSRGEQ*EIRLFH
Trigger: ATGGAAAAGCCTGATTTCTCATTGTTCTCCCCTACT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTAGGGGAGAACAATaGGAAATCAGGCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSRGEQ*EIRLFH
Trigger: ATGGAAAAGCCTGATTTCTCATTGTTCTCCCCTACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCCACTGATGCTCAGTaGATATTCCATGAGGTCGAA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKATDAQ*IFHEVE
Trigger: TTCGACCTCATGGAATATTCACTGAGCATCAGTGGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCAGAGGAGCCATCTaGACGGTTCATTCCATGTTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCRGAI*TVHSMF
Trigger: AAACATGGAATGAACCGTTCAGATGGCTCCTCTGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCAGAGGAGCCATCTaGACGGTTCATTCCATGTTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCRGAI*TVHSMF
Trigger: AAACATGGAATGAACCGTTCAGATGGCTCCTCTGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGTGTTCTTCACTTTTaGGCAAAAGTCACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGVLHF*AKVTEE
Trigger: CTCTTCAGTGACTTTTGCTCAAAAGTGAAGAACACC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTGTTCTTCACTTTTaGGCAAAAGTCACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGVLHF*AKVTEE
Trigger: CTCTTCAGTGACTTTTGCTCAAAAGTGAAGAACACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGTGTGAAAACCTTTaGGTGGAAGTCAGTCCATGC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWCENL*VEVSPC
Trigger: GCATGGACTGACTTCCACTCAAAGGTTTTCACACCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGCAGTGTCTGGTGTaGAAACCTTTGAGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLQCLV*KPLSGS
Trigger: ACTTCCACTCAAAGGTTTTCACACCAGACACTGCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCACTCTGAGATCTTaGAGTCACCAGCCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSTLRS*SHQPEV
Trigger: AACTTCTGGCTGGTGACTGCAAGATCTCAGAGTGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCACTCTGAGATCTTaGAGTCACCAGCCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTLRS*SHQPEV
Trigger: AACTTCTGGCTGGTGACTGCAAGATCTCAGAGTGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTCTCAGACATTGCTaGATAGTAGGCACAAGTCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSLRHC*IVGTSH
Trigger: ATGACTTGTGCCTACTATGCAGCAATGTCTGAGACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTAGTCTCAGACATTaGTGCATAGTAGGCACAAGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLSLRH*CIVGTS
Trigger: ACTTGTGCCTACTATGCAGCAATGTCTGAGACTAAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCCATCTTCTGTAGCTaGTCCCACAAGTACTTTGTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQAIFCS*SHKYFV
Trigger: CACAAAGTACTTGTGGGAGCAGCTACAGAAGATGGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCCAATGGTGAAACCTaGAGTAGCTTCCTGGCACTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSNGET*SSFLAL
Trigger: AAGTGCCAGGAAGCTACTGCAGGTTTCACCATTGGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGAGCTCCCCAAATTTaGTCTTTAAATGGCTACAGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRAPQI*SLNGYR
Trigger: CCTGTAGCCATTTAAAGAGCAAATTTGGGGAGCTCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGAGCTCCCCAAATTTaGTCTTTAAATGGCTACAGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVRAPQI*SLNGYR
Trigger: CCTGTAGCCATTTAAAGAGCAAATTTGGGGAGCTCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAATCATGAACTCCGGTaGCCAGCGCATATTGGATTC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQNHELR*PAHIGF
Trigger: GAATCCAATATGCGCTGGGCACCGGAGTTCATGATT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATAGACATCCAGACTTaGTGTCTCCACAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYIDIQT*CLHRDV
Trigger: AACATCTCTGTGGAGACAGCAAGTCTGGATGTCTAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGTCTTGTAGATCATTaGTATCCTCACACAGTGACT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGLVDH*YPHTVT
Trigger: AGTCACTGTGTGAGGATAGCAATGATCTACAAGACC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTCTTGTAGATCATTaGTATCCTCACACAGTGACT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGLVDH*YPHTVT
Trigger: AGTCACTGTGTGAGGATAGCAATGATCTACAAGACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGCTCAACAGGGACATaGTCTTCTGTTTCTGTCGAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGSTGT*SSVSVD
Trigger: ATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGCTCAACAGGGACATaGTCTTCTGTTTCTGTCGAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGSTGT*SSVSVD
Trigger: ATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGCCTCATGCATTAGCTaGTTTGGTTTGCAATCATCT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYASCIS*FGLQSS
Trigger: AGATGATTGCAAACCAAAGCAGCTAATGCATGAGGC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCTCATGCATTAGCTaGTTTGGTTTGCAATCATCT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVASCIS*FGLQSS
Trigger: AGATGATTGCAAACCAAAGCAGCTAATGCATGAGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGTTTGAGTGCCTCATaGATTAGCTGCTTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSLSAS*ISCFGL
Trigger: CAAACCAAAGCAGCTAATGCATGAGGCACTCAAACT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTTTTCCTCCATGCTaGCTTGCGAGATACTGGACA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCFPPC*LARYWT
Trigger: TGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTTTTCCTCCATGCTaGCTTGCGAGATACTGGACA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCFPPC*LARYWT
Trigger: TGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCACCAGGTTCATATATaGACGCTTGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHQVHI*TLVFLH
Trigger: ATGGAGGAAAACAAGCGTGCATATATGAACCTGGTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACCAGGTTCATATATaGACGCTTGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHQVHI*TLVFLH
Trigger: ATGGAGGAAAACAAGCGTGCATATATGAACCTGGTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATGACATCTCGGTTCTaGTTGGGTAGTGGCAACAGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKMTSRF*LGSGNS
Trigger: ACTGTTGCCACTACCCAAGCAGAACCGAGATGTCAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATGACATCTCGGTTCTaGTTGGGTAGTGGCAACAGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQMTSRF*LGSGNS
Trigger: ACTGTTGCCACTACCCAAGCAGAACCGAGATGTCAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATCATGGGTGTCTGCTaGAGTGTCTGGTGTGAAAAC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIMGVC*SVWCEN
Trigger: GTTTTCACACCAGACACTGCAGCAGACACCCATGAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTTGTTGTTGCTGCTaGTCAGGCAGGATGGAAGTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCCCCC*SGRMEV
Trigger: AACTTCCATCCTGCCTGAGCAGCAGCAACAACAACA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCAGAGACAGCAGGCTaGTTATTGAAACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPETAG*LLKPCF
Trigger: AAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGAGACAGCAGGCTaGTTATTGAAACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPETAG*LLKPCF
Trigger: AAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGGCACCGTGTATTTaGCCAAATACCCAAATACTT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQAPCI*PNTQIL
Trigger: AAGTATTTGGGTATTTGGCCAAATACACGGTGCCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCCATCTCTACATCATaGGGCAAAGGCCCTATAGTA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAISTS*GKGPIV
Trigger: TACTATAGGGCCTTTGCCCCATGATGTAGAGATGGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCTGCAGTAGCTTCCTaGCACTTATCAAAAGACCAG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPAVAS*HLSKDQ
Trigger: CTGGTCTTTTGATAAGTGCCAGGAAGCTACTGCAGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCTGCAGTAGCTTCCTaGCACTTATCAAAAGACCAG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPAVAS*HLSKDQ
Trigger: CTGGTCTTTTGATAAGTGCCAGGAAGCTACTGCAGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCACTTCTAAAGTATaGAGCACCCGTCCAATGGTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTSKV*STRPMV
Trigger: CACCATTGGACGGGTGCTCCATACTTTAGAAGTGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAGGTGTACATATTATaGGAGAAGACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQVYIL*EKTSCR
Trigger: CCGACATGATGTCTTCTCCCATAATATGTACACCTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTGTACATATTATaGGAGAAGACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQVYIL*EKTSCR
Trigger: CCGACATGATGTCTTCTCCCATAATATGTACACCTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTCCTTTTCGACATCTaGTTTCTCAGGGGATGGGCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFLFDI*FLRGWA
Trigger: AGCCCATCCCCTGAGAAACCAGATGTCGAAAAGGAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCCTCGATCTTCTCTTTaGCTGGGGGTTTTACTTCCT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQPRSSL*LGVLLP
Trigger: AGGAAGTAAAACCCCCAGCCAAAGAGAAGATCGAGG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCACGTTACAGTAGATaGTGTTCTTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVPRYSR*CSSLLS
Trigger: GCTCAAAAGTGAAGAACACCATCTACTGTAACGTGG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCACGTTACAGTAGATaGTGTTCTTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPRYSR*CSSLLS
Trigger: GCTCAAAAGTGAAGAACACCATCTACTGTAACGTGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTCGCAGCACGTACTTaGCATAGACATCCAGACTTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFAART*HRHPDL
Trigger: CAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTCCAGCAGTCGATGTaGGTAGCAGATAAGTTGCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVQQSM*VADKLH
Trigger: ATGCAACTTATCTGCTACCCACATCGACTGCTGGAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGATAAGAAAGGCTGTTaGCTCAACAGGGACATGCTC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKDKKGC*LNRDML
Trigger: GAGCATGTCCCTGTTGAGCCAACAGCCTTTCTTATC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAATTAATCACAATCTaGTGCACCTGGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQLITI*CTWLWR
Trigger: CCTCCACAGCCAGGTGCACCAGATTGTGATTAATTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCAGGCTGGTTATTaGAACCTTGTTTTACATTCA +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQQAGY*NLVLHS
Trigger: TGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCACAGGAGATCATTaGAACCACAAGTGCCATTGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCTGDH*NHKCHC
Trigger: ACAATGGCACTTGTGGTTTCAATGATCTCCTGTGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCATCCTCCTTCTGTTTaGGATCTTGAGGGTACACAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHPPSV*DLEGTH
Trigger: ATGTGTACCCTCAAGATCCCAAACAGAAGGAGGATG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATCCTCCTTCTGTTTaGGATCTTGAGGGTACACAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHPPSV*DLEGTH
Trigger: ATGTGTACCCTCAAGATCCCAAACAGAAGGAGGATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGAAGTTGTCCTTCTaGTTCATTAGGGACTTCCTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQKLSF*FIRDFL
Trigger: CAGGAAGTCCCTAATGAACCAGAAGGACAACTTCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAGTTGTCCTTCTaGTTCATTAGGGACTTCCTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQKLSF*FIRDFL
Trigger: CAGGAAGTCCCTAATGAACCAGAAGGACAACTTCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGAGCGCTCGAAACTATaGCTATCCAGCACTTCTAAA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKERSKL*LSSTSK
Trigger: TTTAGAAGTGCTGGATAGCCATAGTTTCGAGCGCTC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCTCTGCACAAAGGATaGCGATGTCATTTACCCTAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKALHKG*RCHLPY
Trigger: ATAGGGTAAATGACATCGCCATCCTTTGTGCAGAGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCTCTGCACAAAGGATaGCGATGTCATTTACCCTAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQALHKG*RCHLPY
Trigger: ATAGGGTAAATGACATCGCCATCCTTTGTGCAGAGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGTTTCCATCAGACTaGCAAGGATTGAGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLFPSD*QGLSCG
Trigger: GCCACAACTCAATCCTTGCCAGTCTGATGGAAACAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAAGAGGACTGGCGCATaGTCCATTGGTCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKKRTGA*SIGLNS
Trigger: AGAATTTAGACCAATGGACCATGCGCCAGTCCTCTT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTTAATACATGGCCCTaGACTGAAGTGGGCAGTTTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFNTWP*TEVGSL
Trigger: CAAACTGCCCACTTCAGTCCAGGGCCATGTATTAAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTTAATACATGGCCCTaGACTGAAGTGGGCAGTTTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFNTWP*TEVGSL
Trigger: CAAACTGCCCACTTCAGTCCAGGGCCATGTATTAAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTGAAAACCTTTGAGTaGAAGTCAGTCCATGCCCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVKTFE*KSVHAH
Trigger: ATGGGCATGGACTGACTTCCACTCAAAGGTTTTCAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTTGCTGTCGGATATaGTACTGCTGTTGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCCCRI*YCCCCC
Trigger: GCAACAACAACAGCAGTACCATATCCGACAGCAACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTACTTTGTGATGATTTaGGTCCATTCAGTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQYFVMI*VHSVKG
Trigger: CCCCTTCACTGAATGGACTCAAATCATCACAAAGTA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTACTTTGTGATGATTTaGGTCCATTCAGTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKYFVMI*VHSVKG
Trigger: CCCCTTCACTGAATGGACTCAAATCATCACAAAGTA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTAGGGGAGAACAATaGGAAATCAGGCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSRGEQ*EIRLFH
Trigger: ATGGAAAAGCCTGATTTCTCATTGTTCTCCCCTACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTCTCAGACATTGCTaGATAGTAGGCACAAGTCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSLRHC*IVGTSH
Trigger: ATGACTTGTGCCTACTATGCAGCAATGTCTGAGACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGTCTCAGACATTGCTaGATAGTAGGCACAAGTCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSLRHC*IVGTSH
Trigger: ATGACTTGTGCCTACTATGCAGCAATGTCTGAGACT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTTAGTCTCAGACATTaGTGCATAGTAGGCACAAGT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLSLRH*CIVGTS
Trigger: ACTTGTGCCTACTATGCAGCAATGTCTGAGACTAAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTTAGTCTCAGACATTaGTGCATAGTAGGCACAAGT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLSLRH*CIVGTS
Trigger: ACTTGTGCCTACTATGCAGCAATGTCTGAGACTAAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGAGCTCCCCAAATTTaGTCTTTAAATGGCTACAGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRAPQI*SLNGYR
Trigger: CCTGTAGCCATTTAAAGAGCAAATTTGGGGAGCTCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATAGACATCCAGACTTaGTGTCTCCACAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIDIQT*CLHRDV
Trigger: AACATCTCTGTGGAGACAGCAAGTCTGGATGTCTAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGTCTTGTAGATCATTaGTATCCTCACACAGTGACT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGLVDH*YPHTVT
Trigger: AGTCACTGTGTGAGGATAGCAATGATCTACAAGACC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTAGCTGCTTTGGTTTaGAATCATCTAAGTACTGGT +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLAALV*NHLSTG
Trigger: ACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTAGCTGCTTTGGTTTaGAATCATCTAAGTACTGGT +
Preference number: 4 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLAALV*NHLSTG
Trigger: ACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGTTTGAGTGCCTCATaGATTAGCTGCTTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSLSAS*ISCFGL
Trigger: CAAACCAAAGCAGCTAATGCATGAGGCACTCAAACT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTTTGAGTGCCTCATaGATTAGCTGCTTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSLSAS*ISCFGL
Trigger: CAAACCAAAGCAGCTAATGCATGAGGCACTCAAACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCACCAGGTTCATATATaGACGCTTGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHQVHI*TLVFLH
Trigger: ATGGAGGAAAACAAGCGTGCATATATGAACCTGGTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR GCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCACCAGGTTCATATATaGACGCTTGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHQVHI*TLVFLH
Trigger: ATGGAGGAAAACAAGCGTGCATATATGAACCTGGTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCACCGTGTATTTaGCCAAATACCCAAATACTT +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQAPCI*PNTQIL
Trigger: AAGTATTTGGGTATTTGGCCAAATACACGGTGCCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGGTGTACATATTATaGGAGAAGACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQVYIL*EKTSCR
Trigger: CCGACATGATGTCTTCTCCCATAATATGTACACCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTGTACATATTATaGGAGAAGACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQVYIL*EKTSCR
Trigger: CCGACATGATGTCTTCTCCCATAATATGTACACCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGCAGGCTGGTTATTaGAACCTTGTTTTACATTCA +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQQAGY*NLVLHS
Trigger: TGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR TCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGGCTGGTTATTaGAACCTTGTTTTACATTCA +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQQAGY*NLVLHS
Trigger: TGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAATCATCTAAGTACTaGTTTTCTCGCCAATTAATC +
Preference number: 4 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQSSKY*FSRQLI
Trigger: GATTAATTGGCGAGAAAACCAGTACTTAGATGATTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAATCATCTAAGTACTaGTTTTCTCGCCAATTAATC +
Preference number: 4 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQSSKY*FSRQLI
Trigger: GATTAATTGGCGAGAAAACCAGTACTTAGATGATTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CCA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAATCATCTAAGTACTaGTTTTCTCGCCAATTAATC +
Preference number: 4 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQSSKY*FSRQLI
Trigger: GATTAATTGGCGAGAAAACCAGTACTTAGATGATTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCCACTGGGCCGCTGTaGCAGGTGGCGGGTAGGATC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVATGPL*QVAGRI
Trigger: GATCCTACCCGCCACCTGCAACAGCGGCCCAGTGGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp ACAGCCTTGAGAACAGCAAACACAGCCCCATCCACGATGCGGTTCTaGGAGGCAGCCAGCAGGTGGCGGTCACAGGAGGACCGGATTCCA +
Preference number: 5 (lower is better)
Translates to: TALRTANTAPSTMRF*EAASRWRSQEDRIP
Trigger: TGGAATCCGGTCCTCCTGTGACCGCCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGATGGGGCTGTGTTTGCTGTTCTCAAGGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCTTCGGGCCGGTaGCGTCGTCGCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYKASGR*RRRFCP
Trigger: TGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCTT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAAGGCTTCGGGCCGGTaGCGTCGTCGCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVKASGR*RRRFCP
Trigger: TGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCTT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TGCTCAGGCAGGATGGAAGTTGAACGGACGCCTGCCTGGACACCCTaGGCACTCAACGGAGTCATGGTACCCATCATGGGTGTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: CSGRMEVERTPAWTP*ALNGVMVPIMGVCC
Trigger: GCAGCAGACACCCATGATGGGTACCATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTCAGGCAGGATaGAAGTTGAACGGACGCCTGCCTGGACACCCTGGGCACTCAACG +
Preference number: 5 (lower is better)
Translates to: AVAAAAVVVAAAQAG*KLNGRLPGHPGHST
Trigger: CGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTTGCCTGGAGCTGTaGGCGAAGGCGCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLCLEL*AKALSL
Trigger: CAGGGACAGCGCCTTCGCCAACAGCTCCAGGCAAAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCCACTGGGCCGCTGTaGCAGGTGGCGGGTAGGATC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQATGPL*QVAGRI
Trigger: GATCCTACCCGCCACCTGCAACAGCGGCCCAGTGGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCCACTGGGCCGCTGTaGCAGGTGGCGGGTAGGATC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKATGPL*QVAGRI
Trigger: GATCCTACCCGCCACCTGCAACAGCGGCCCAGTGGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACTCTGCTGGAGCTGTaGGCGAAGGCGCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTLLEL*AKALSL
Trigger: CAGGGACAGCGCCTTCGCCAACAGCTCCAGCAGAGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087956.6
CDS TCA 90 bp CTGCTGCTGCTGTTGTTGTTGCTGCTGCTCAGGCAGGATGGAAGTTaGACGGACGCCTGCCTGGACACCCTGGGCACTCAACGGAGTCAT +
Preference number: 5 (lower is better)
Translates to: LLLLLLLLLLRQDGS*TDACLDTLGTQRSH
Trigger: ATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGCTaGTCAGGCAGGATGGAAGTTGAACGGACGCCTGCCTGGACACCC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*SGRMEVERTPAWTP
Trigger: GGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTaGTGCTGCTCAGGCAGGATGGAAGTTGAACGGACGCCTGCCTGG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCSGRMEVERTPAW
Trigger: CCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp AACACAGCCCCATCCACGATGCGGTTCTGGGAGGCAGCCAGCAGGTaGCGGTCACAGGAGGACCGGATTCCAACAGTAGGTTTGTTTCCA +
Preference number: 5 (lower is better)
Translates to: NTAPSTMRFWEAASR*RSQEDRIPTVGLFP
Trigger: TGGAAACAAACCTACTGTTGGAATCCGGTCCTCCTGTGACCGCCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGATGGGGCTGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TGTTGCTGCTGCTCAGGCAGGATGGAAGTTGAACGGACGCCTGCCTaGACACCCTGGGCACTCAACGGAGTCATGGTACCCATCATGGGT +
Preference number: 5 (lower is better)
Translates to: CCCCSGRMEVERTPA*TPWALNGVMVPIMG
Trigger: ACCCATGATGGGTACCATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAGGCTTCGGGCCGGTaGCGTCGTCGCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQKASGR*RRRFCP
Trigger: TGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCTT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTGCCCAGCGCATATaGGATTCCGATGGCTCCACG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGAQRI*DSDGST
Trigger: CGTGGAGCCATCGGAATCCAATATGCGCTGGGCACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTCTCCACAGAGATGTaGCGGCCACCCTGTCTCCGA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVSTEM*RPPCLR
Trigger: TCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGGGCACTGTGGGTaGCTGCTGCCGGTATACAGA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLGHCG*LLPVYR
Trigger: TCTGTATACCGGCAGCAGCAACCCACAGTGCCCCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp CGTACTTGGCATAGACATCCAGACTTGCTGTCTCCACAGAGATGTTaGGGCCACCCTGTCTCCGACCGCTACTACCACCTCCTCCCTCCT +
Preference number: 5 (lower is better)
Translates to: RTWHRHPDLLSPQRC*GHPVSDRYYHLLPP
Trigger: AGGAGGGAGGAGGTGGTAGTAGCGGTCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp CCTCATCTTCTGGGGGCAGAGGTAGTGGTTCCAGGTAATAGGCTCTaGGTCGAGGCCTCAGGTGGGTATGATAGAGCAACAGCCGCTGCT +
Preference number: 5 (lower is better)
Translates to: PHLLGAEVVVPGNRL*VEASGGYDRATAAA
Trigger: AGCAGCGGCTGTTGCTCTATCATACCCACCTGAGGCCTCGACCCAGAGCCTATTACCTGGAACCACTACCTCTGCCCCCAGAAGATGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TTGAACGGACGCCTGCCTGGACACCCTGGGCACTCAACGGAGTCATaGTACCCATCATGGGTGTCTGCTGCAGTGTCTGGTGTGAAAACC +
Preference number: 5 (lower is better)
Translates to: LNGRLPGHPGHSTES*YPSWVSAAVSGVKT
Trigger: GGTTTTCACACCAGACACTGCAGCAGACACCCATGATGGGTACCATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTGTGTGAGTGGTTaGGTGCCAGCCAGGTCAGTG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRCVSG*VPARSV
Trigger: CACTGACCTGGCTGGCACCAAACCACTCACACACCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAACGACCAACCGCTGGTaGCACTCATGGCTGCATGAC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVTTNRW*HSWLHD
Trigger: GTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGGGTAGCAGATAAGTaGCATGAGGCGCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVWVADK*HEALGL
Trigger: CAGGCCCAGCGCCTCATGCAACTTATCTGCTACCCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGGTAGCAGATAAGTaGCATGAGGCGCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYWVADK*HEALGL
Trigger: CAGGCCCAGCGCCTCATGCAACTTATCTGCTACCCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTTTGCCTGGAGCTGTaGGCGAAGGCGCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLCLEL*AKALSL
Trigger: CAGGGACAGCGCCTTCGCCAACAGCTCCAGGCAAAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTCCATGCCCATAGGTaGGGGCCTGCTGATGCACAT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVHAHR*GPADAH
Trigger: ATGTGCATCAGCAGGCCCCAACCTATGGGCATGGAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTCCATGCCCATAGGTaGGGGCCTGCTGATGCACAT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVHAHR*GPADAH
Trigger: ATGTGCATCAGCAGGCCCCAACCTATGGGCATGGAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAAGCTGCTGTCTGTaGCTGCTGCTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVQSCCL*LLLGLL
Trigger: CAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCAAAGCTGCTGTCTGTaGCTGCTGCTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYQSCCL*LLLGLL
Trigger: CAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp AGCCTGTGTATCCAGAAACTGCAGGAGGACATCCTGGAAAATGGGTaGACTAGGAGCGGAAAGGGAACCAGAGGCGACGGAGCCCTTCTC +
Preference number: 5 (lower is better)
Translates to: SLCIQKLQEDILENG*TRSGKGTRGDGALL
Trigger: GAGAAGGGCTCCGTCGCCTCTGGTTCCCTTTCCGCTCCTAGTGCACCCATTTTCCAGGATGTCCTCCTGCAGTTTCTGGATACACAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp CATCTCGCTGCTTCCCCACCCCAAACAGTACGACCAACCGCTGGTTaGACTCATGGCTGCATGACTCCTCCTGTGGGATTGGAAAGTGTG +
Preference number: 5 (lower is better)
Translates to: HLAASPPQTVRPTAG*THGCMTPPVGLESV
Trigger: CACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCAGCGAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TTGGCAGATGCTTCGCAGCACGTACTTGGCATAGACATCCAGACTTaGTGTCTCCACAGAGATGTTGCGGCCACCCTGTCTCCGACCGCT +
Preference number: 5 (lower is better)
Translates to: LADASQHVLGIDIQT*CLHRDVAATLSPTA
Trigger: AGCGGTCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGCATCTGCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GTCAGCATGGGAGCCTGTGTATCCAGAAACTGCAGGAGGACATCCTaGAAAATGGGTGCACTAGGAGCGGAAAGGGAACCAGAGGCGACG +
Preference number: 5 (lower is better)
Translates to: VSMGACVSRNCRRTS*KMGALGAEREPEAT
Trigger: CGTCGCCTCTGGTTCCCTTTCCGCTCCTAGTGCACCCATTTTCCAGGATGTCCTCCTGCAGTTTCTGGATACACAGGCTCCCATGCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GCATCATCTCGCTGCTTCCCCACCCCAAACAGTACGACCAACCGCTaGTTGCACTCATGGCTGCATGACTCCTCCTGTGGGATTGGAAAG +
Preference number: 5 (lower is better)
Translates to: ASSRCFPTPNSTTNR*LHSWLHDSSCGIGK
Trigger: CTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCAGCGAGATGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCCGACCTGAGCGTTaGCAGCTTACAGCCCATTCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCRPER*QLTAHS
Trigger: TGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCCGACCTGAGCGTTaGCAGCTTACAGCCCATTCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYCRPER*QLTAHS
Trigger: TGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGCA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGCCTTCAGCCTCCTaGCGCTCTGGATCATCTGTA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLPSAS*RSGSSV
Trigger: TACAGATGATCCAGAGCGCAAGGAGGCTGAAGGCAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCCTTCAGCCTCCTaGCGCTCTGGATCATCTGTA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLPSAS*RSGSSV
Trigger: TACAGATGATCCAGAGCGCAAGGAGGCTGAAGGCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACCAGATCCGACGATTaGAGAAGGAGCTCCGCCTCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTRSDD*RRSSAS
Trigger: TGAGGCGGAGCTCCTTCTCAAATCGTCGGATCTGGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAACCAGATCCGACGATTaGAGAAGGAGCTCCGCCTCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVTRSDD*RRSSAS
Trigger: TGAGGCGGAGCTCCTTCTCAAATCGTCGGATCTGGT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAGCCCCTCAAACACTaGCGCCATCTGGTCCTGATT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVEPLKH*RHLVLI
Trigger: AATCAGGACCAGATGGCGCAAGTGTTTGAGGGGCTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGTGCCCAGCGCATATaGGATTCCGATGGCTCCACG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGAQRI*DSDGST
Trigger: CGTGGAGCCATCGGAATCCAATATGCGCTGGGCACC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTCTCCACAGAGATGTaGCGGCCACCCTGTCTCCGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVSTEM*RPPCLR
Trigger: TCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTCTCCACAGAGATGTaGCGGCCACCCTGTCTCCGA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVSTEM*RPPCLR
Trigger: TCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCACAGGTTTGGTCTaGCTGCTGCTGGGCATGTTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSTGLV*LLLGML
Trigger: CAACATGCCCAGCAGCAGCAAGACCAAACCTGTGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCAGCCAACGTTCCGTaGATAAGCACGCTCAGCATG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAANVP*ISTLSM
Trigger: CATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTGGCAGCTTTTGCATaGGTAATCGCACGGGGCGGT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLAAFA*VIARGG
Trigger: ACCGCCCCGTGCGATTACCAATGCAAAAGCTGCCAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGGGGCACTGTGGGTaGCTGCTGCCGGTATACAGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLGHCG*LLPVYR
Trigger: TCTGTATACCGGCAGCAGCAACCCACAGTGCCCCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGGGGCACTGTGGGTaGCTGCTGCCGGTATACAGA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLGHCG*LLPVYR
Trigger: TCTGTATACCGGCAGCAGCAACCCACAGTGCCCCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCAGGATGGAAGTaGAACGGACGCCTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQAGWK*NGRLPG
Trigger: TCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAGGCAGGATGGAAGTaGAACGGACGCCTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQAGWK*NGRLPG
Trigger: TCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGCTGCTGCTGCTGTaGCTGTCGGATATGGTACTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLLLLL*LSDMVL
Trigger: CAGTACCATATCCGACAGCAACAGCAGCAGCAGCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TCCCCACCCCAAACAGTACGACCAACCGCTGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGATTGGAAAGTGTGTGGCATACTGCA +
Preference number: 5 (lower is better)
Translates to: SPPQTVRPTAGCTHG*MTPPVGLESVWHTA
Trigger: TGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp ATCTGGTGCACCTGGCTGTGGAGGGAGGCCAGGAGTCCCTCGCGCTaGTCATCCTGTCCTTTCAGACATGTTAGCACCAGTGATAAGAAA +
Preference number: 5 (lower is better)
Translates to: IWCTWLWREARSPSR*SSCPFRHVSTSDKK
Trigger: TTTCTTATCACTGGTGCTAACATGTCTGAAAGGACAGGATGAGCAGCGCGAGGGACTCCTGGCCTCCCTCCACAGCCAGGTGCACCAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCCGTAGCATCTGCTaGTGCTGCTGTTGCTGTCGGATATGGTACTGCTGTTGTTGTTGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCRSIC*CCCCCRIWYCCCCC
Trigger: GCAACAACAACAGCAGTACCATATCCGACAGCAACAGCAGCAGCAGCAGATGCTACGGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TGCTTCCCCACCCCAAACAGTACGACCAACCGCTGGTTGCACTCATaGCTGCATGACTCCTCCTGTGGGATTGGAAAGTGTGTGGCATAC +
Preference number: 5 (lower is better)
Translates to: CFPTPNSTTNRWLHS*LHDSSCGIGKCVAY
Trigger: GTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TCCATGAGGTCGAAGATGAACTGCACATGCTGCACCAGAGGCAAGTaGTACGACATGCCAAGGGCGAAGCTCGTGATCTGCTCCAGAACG +
Preference number: 5 (lower is better)
Translates to: SMRSKMNCTCCTRGK*YDMPRAKLVICSRT
Trigger: CGTTCTGGAGCAGATCACGAGCTTCGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GACTGCATGTCCACAGTGCCGCTGATGATGATCTCAAGGAGAAGCTaGGCCCACTCTGTAGTCTGCTGGGTACTACGCTGCACAGTGTCA +
Preference number: 5 (lower is better)
Translates to: DCMSTVPLMMISRRS*AHSVVCWVLRCTVS
Trigger: TGACACTGTGCAGCGTAGTACCCAGCAGACTACAGAGTGGGCCCAGCTTCTCCTTGAGATCATCATCAGCGGCACTGTGGACATGCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TCTTTGCCTGGAGCTGTTGGCGAAGGCGCTGTCCCTGGGGCACTGTaGGTTGCTGCTGCCGGTATACAGATGTCTTATAAGAAGAGGGTT +
Preference number: 5 (lower is better)
Translates to: SLPGAVGEGAVPGAL*VAAAGIQMSYKKRV
Trigger: AACCCTCTTCTTATAAGACATCTGTATACCGGCAGCAGCAACCCACAGTGCCCCAGGGACAGCGCCTTCGCCAACAGCTCCAGGCAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTTCTGTTTGGGATCTaGAGGGTACACATCGGGAGG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLLFGI*RVHIGR
Trigger: CCTCCCGATGTGTACCCTCAAGATCCCAAACAGAAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGGTGTGTGAGTGGTTaGGTGCCAGCCAGGTCAGTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRCVSG*VPARSV
Trigger: CACTGACCTGGCTGGCACCAAACCACTCACACACCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACGACCAACCGCTGGTaGCACTCATGGCTGCATGAC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTTNRW*HSWLHD
Trigger: GTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTTTCTGCTGTCCCCTaGCGATTCAGAACCTTCAGG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVSAVP*RFRTFR
Trigger: CCTGAAGGTTCTGAATCGCAAGGGGACAGCAGAAAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAGCCGTGACCTGGTGTaGGTCATAATGGGAAAGGTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSRDLV*VIMGKV
Trigger: CACCTTTCCCATTATGACCAACACCAGGTCACGGCT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGCCGTGACCTGGTGTaGGTCATAATGGGAAAGGTG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSRDLV*VIMGKV
Trigger: CACCTTTCCCATTATGACCAACACCAGGTCACGGCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGGCAAGGATTGAGTaGTGGCGTCTTGAACAGGTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLARIE*WRLEQV
Trigger: CACCTGTTCAAGACGCCACAACTCAATCCTTGCCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGGGTAGCAGATAAGTaGCATGAGGCGCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKWVADK*HEALGL
Trigger: CAGGCCCAGCGCCTCATGCAACTTATCTGCTACCCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGGTTGAGCCGCAGTTaGAGTGCCTCATGCATTAGC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYRLSRS*SASCIS
Trigger: GCTAATGCATGAGGCACTCAAACTGCGGCTCAACCT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTCCTCCATGCTGCCTaGCGAGATACTGGACATGTC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVFLHAA*RDTGHV
Trigger: GACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCCTCCATGCTGCCTaGCGAGATACTGGACATGTC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFLHAA*RDTGHV
Trigger: GACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGCAATCTTGTTGCCCTaGGTGTCAATAAGGGAGCCC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVAILLP*VSIREP
Trigger: GGGCTCCCTTATTGACACCAAGGGCAACAAGATTGC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGACAGTGGTGCTGTaGATGGCTTCAGGCCCTCAA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYMTVVL*MASGPQ
Trigger: TTGAGGGCCTGAAGCCATCAACAGCACCACTGTCAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCCTGACTCTGTATCTTaGCCTGGAGCTGTTGGCGAA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYPDSVS*PGAVGE
Trigger: TTCGCCAACAGCTCCAGGCAAAGATACAGAGTCAGG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTCCATGCCCATAGGTaGGGGCCTGCTGATGCACAT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVHAHR*GPADAH
Trigger: ATGTGCATCAGCAGGCCCCAACCTATGGGCATGGAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCAAAGCTGCTGTCTGTaGCTGCTGCTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQQSCCL*LLLGLL
Trigger: CAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAAAGCTGCTGTCTGTaGCTGCTGCTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKQSCCL*LLLGLL
Trigger: CAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGAGCTGTTGTTGAAGTaGCCGGACCAAAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVELLLK*PDQSCC
Trigger: ACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGAGCTGTTGTTGAAGTaGCCGGACCAAAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYELLLK*PDQSCC
Trigger: ACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp CACCCCAAACAGTACGACCAACCGCTGGTTGCACTCATGGCTGCATaGCTCCTCCTGTGGGATTGGAAAGTGTGTGGCATACTGCACATG +
Preference number: 5 (lower is better)
Translates to: HPKQYDQPLVALMAA*LLLWDWKVCGILHM
Trigger: CATGTGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp AGCCTGAACCTTTTAGCTCCGCATCTCCGAGTACAAACACAGCCTTaGGAACAGCAAACACAGCCCCATCCACGATGCGGTTCTGGGAGG +
Preference number: 5 (lower is better)
Translates to: SLNLLAPHLRVQTQP*EQQTQPHPRCGSGR
Trigger: CCTCCCAGAACCGCATCGTGGATGGGGCTGTGTTTGCTGTTCTCAAGGCTGTGTTTGTACTCGGAGATGCGGAGCTAAAAGGTTCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TGGCTGCATGACTCCTCCTGTGGGATTGGAAAGTGTGTGGCATACTaGACATGTCGTGGCTGGTCATACAGAATCCCAAGTGTCCCCTCG +
Preference number: 5 (lower is better)
Translates to: WLHDSSCGIGKCVAY*TCRGWSYRIPSVPS
Trigger: CGAGGGGACACTTGGGATTCTGTATGACCAGCCACGACATGTGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTGAAGTTGACGTTCTaGGCACTGCCATGTTCGTCC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLKLTF*ALPCSS
Trigger: GGACGAACATGGCAGTGCCAAGAACGTCAACTTCAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTCACCAGCCAGAAGTaGTCCTTCTGGTTCATTAGG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVTSQK*SFWFIR
Trigger: CCTAATGAACCAGAAGGACAACTTCTGGCTGGTGAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGCGAACCTCAACTGCTaGTCCACGCTCCTTGATCTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQANLNC*STLLDL
Trigger: CAGATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCGAACCTCAACTGCTaGTCCACGCTCCTTGATCTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKANLNC*STLLDL
Trigger: CAGATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCCGACCTGAGCGTTaGCAGCTTACAGCCCATTCA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCRPER*QLTAHS
Trigger: TGAATGGGCTGTAAGCTGCAAACGCTCAGGTCGGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGCCTTCAGCCTCCTaGCGCTCTGGATCATCTGTA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLPSAS*RSGSSV
Trigger: TACAGATGATCCAGAGCGCAAGGAGGCTGAAGGCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAACTCCTCCTGTGGGATaGGAAAGTGTGTGGCATACT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVTPPVG*ESVWHT
Trigger: AGTATGCCACACACTTTCCAATCCCACAGGAGGAGT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCCTTGGTAATCTTCTaGATGGCATGGCGGGCATCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSLVIF*MAWRAS
Trigger: TGATGCCCGCCATGCCATCAAGAAGATTACCAAGGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCCTTGGTAATCTTCTaGATGGCATGGCGGGCATCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSLVIF*MAWRAS
Trigger: TGATGCCCGCCATGCCATCAAGAAGATTACCAAGGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACCAGATCCGACGATTaGAGAAGGAGCTCCGCCTCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTRSDD*RRSSAS
Trigger: TGAGGCGGAGCTCCTTCTCAAATCGTCGGATCTGGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAGCCCCTCAAACACTaGCGCCATCTGGTCCTGATT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQEPLKH*RHLVLI
Trigger: AATCAGGACCAGATGGCGCAAGTGTTTGAGGGGCTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATCACTACAAGCAGCATaGAGGAGTGAAGGGATGGCT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVSLQAA*RSEGMA
Trigger: AGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTGA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTGAGTTGTGGCGTCTaGAACAGGTGGAGGAGGATT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLSCGV*NRWRRI
Trigger: AATCCTCCTCCACCTGTTCAAGACGCCACAACTCAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTGAGTTGTGGCGTCTaGAACAGGTGGAGGAGGATT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLSCGV*NRWRRI
Trigger: AATCCTCCTCCACCTGTTCAAGACGCCACAACTCAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCAGACTGGCAAGGATaGAGTTGTGGCGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSDWQG*SCGVLN
Trigger: GTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTTTCTCCATCCTCATaGTCCAGCAGTCGATGTGGG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFSPSS*SSSRCG
Trigger: CCCACATCGACTGCTGGACAATGAGGATGGAGAAAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGCTGGGCATGTTGCTaGCTGTACTTCCAGAAGATG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCWACC*LYFQKM
Trigger: CATCTTCTGGAAGTACAGCAAGCAACATGCCCAGCA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGCACAGGTTTGGTCTaGCTGCTGCTGGGCATGTTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTGLV*LLLGML
Trigger: CAACATGCCCAGCAGCAGCAAGACCAAACCTGTGCT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCACAGGTTTGGTCTaGCTGCTGCTGGGCATGTTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSTGLV*LLLGML
Trigger: CAACATGCCCAGCAGCAGCAAGACCAAACCTGTGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCAGCCAACGTTCCGTaGATAAGCACGCTCAGCATG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAANVP*ISTLSM
Trigger: CATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTGGTAGACTTCTTTTaGCGCTCCTCAGTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLVDFF*RSSVLG
Trigger: TCCGAGCACTGAGGAGCGCAAAAAGAAGTCTACCAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGCTGGCTGCGTTTTTaGCCCTTGGTAGACTTCTTT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGWLRF*PLVDFF
Trigger: AAAGAAGTCTACCAAGGGCAAAAAACGCAGCCAGCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGCTGGCTGCGTTTTTaGCCCTTGGTAGACTTCTTT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGWLRF*PLVDFF
Trigger: AAAGAAGTCTACCAAGGGCAAAAAACGCAGCCAGCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGGCAGCTTTTGCATaGGTAATCGCACGGGGCGGT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLAAFA*VIARGG
Trigger: ACCGCCCCGTGCGATTACCAATGCAAAAGCTGCCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGGCAGCTTTTGCATaGGTAATCGCACGGGGCGGT +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLAAFA*VIARGG
Trigger: ACCGCCCCGTGCGATTACCAATGCAAAAGCTGCCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCTACAAGAGTAGGATaGGTAGAAGGGTGGGTGCTC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTRVG*VEGWVL
Trigger: GAGCACCCACCCTTCTACCAATCCTACTCTTGTAGA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGCTGCTGCTGCTGTaGCTGTCGGATATGGTACTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLLLLL*LSDMVL
Trigger: CAGTACCATATCCGACAGCAACAGCAGCAGCAGCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp AGGCCACTGATGCTCAGTGAATATTCCATGAGGTCGAAGATGAACTaGACATGCTGCACCAGAGGCAAGTGGTACGACATGCCAAGGGCG +
Preference number: 5 (lower is better)
Translates to: RPLMLSEYSMRSKMN*TCCTRGKWYDMPRA
Trigger: CGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTCACTGAGCATCAGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp AGTGTGAGCGGCAGGGTTCTCCAGAGTGTCAATCATGAACTCCGGTaGCCAGCGCATATTGGATTCCGATGGCTCCACGTTACAGTAGAT +
Preference number: 5 (lower is better)
Translates to: SVSGRVLQSVNHELR*PAHIGFRWLHVTVD
Trigger: ATCTACTGTAACGTGGAGCCATCGGAATCCAATATGCGCTGGGCACCGGAGTTCATGATTGACACTCTGGAGAACCCTGCCGCTCACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp TGCTGCTGCTGTTGCTGTTGTTGCTGCTGTTGCCGTAGCATCTGCTaGTGCTGCTGTTGCTGTCGGATATGGTACTGCTGTTGTTGTTGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCRSIC*CCCCCRIWYCCCCC
Trigger: GCAACAACAACAGCAGTACCATATCCGACAGCAACAGCAGCAGCAGCAGATGCTACGGCAACAGCAGCAACAACAGCAACAGCAGCAGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
CDS CCA 90 bp TTTCCATCAGACTGGCAAGGATTGAGTTGTGGCGTCTTGAACAGGTaGAGGAGGATTCGGCAAGTAAGCCTGGCTCCTGGCTCAGAATCC +
Preference number: 5 (lower is better)
Translates to: FPSDWQGLSCGVLNR*RRIRQVSLAPGSES
Trigger: GGATTCTGAGCCAGGAGCCAGGCTTACTTGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GTTCTCCTACCCATTCCTGTTGGCAGATGCTTCGCAGCACGTACTTaGCATAGACATCCAGACTTGCTGTCTCCACAGAGATGTTGCGGC +
Preference number: 5 (lower is better)
Translates to: VLLPIPVGRCFAART*HRHPDLLSPQRCCG
Trigger: GCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGCATCTGCCAACAGGAATGGGTAGGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTTCTGTTTGGGATCTaGAGGGTACACATCGGGAGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLLFGI*RVHIGR
Trigger: CCTCCCGATGTGTACCCTCAAGATCCCAAACAGAAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTTCTGTTTGGGATCTaGAGGGTACACATCGGGAGG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLLFGI*RVHIGR
Trigger: CCTCCCGATGTGTACCCTCAAGATCCCAAACAGAAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTGATCTTGGCAGGATaGAAGTTGACGTTCTTGGCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLILAG*KLTFLA
Trigger: TGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTGATCTTGGCAGGATaGAAGTTGACGTTCTTGGCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLILAG*KLTFLA
Trigger: TGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGATGCTGCTGAAGTaGGAACTGATCTTGGCAGGA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYMMLLK*ELILAG
Trigger: TCCTGCCAAGATCAGTTCCAACTTCAGCAGCATCAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTCTTCTCTAGGAGTTaGGCTACTACCATAGCACGA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLFSRS*ATTIAR
Trigger: TCGTGCTATGGTAGTAGCCAAACTCCTAGAGAAGAG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCTCTTCTCTAGGAGTTaGGCTACTACCATAGCACGA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYLFSRS*ATTIAR
Trigger: TCGTGCTATGGTAGTAGCCAAACTCCTAGAGAAGAG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTTTCTGCTGTCCCCTaGCGATTCAGAACCTTCAGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVSAVP*RFRTFR
Trigger: CCTGAAGGTTCTGAATCGCAAGGGGACAGCAGAAAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGCCGTGACCTGGTGTaGGTCATAATGGGAAAGGTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSRDLV*VIMGKV
Trigger: CACCTTTCCCATTATGACCAACACCAGGTCACGGCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGGCAAGGATTGAGTaGTGGCGTCTTGAACAGGTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLARIE*WRLEQV
Trigger: CACCTGTTCAAGACGCCACAACTCAATCCTTGCCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGGCAAGGATTGAGTaGTGGCGTCTTGAACAGGTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLARIE*WRLEQV
Trigger: CACCTGTTCAAGACGCCACAACTCAATCCTTGCCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAGTACAAACACAGCCTaGAGAACAGCAAACACAGCC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYSTNTA*RTANTA
Trigger: GGCTGTGTTTGCTGTTCTCAAGGCTGTGTTTGTACT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCATAGACATCCAGACTaGCTGTCTCCACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHRHPD*LSPQRC
Trigger: ACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGGTCTTGTAGATCATaGCTATCCTCACACAGTGAC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGSCRS*LSSHSD
Trigger: GTCACTGTGTGAGGATAGCAATGATCTACAAGACCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGGTCTTGTAGATCATaGCTATCCTCACACAGTGAC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGSCRS*LSSHSD
Trigger: GTCACTGTGTGAGGATAGCAATGATCTACAAGACCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGTTGGAAAACCTCGATaGTGGCCTTGGCAATGTTCT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVVGKPR*WPWQCS
Trigger: AGAACATTGCCAAGGCCACAATCGAGGTTTTCCAAC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGTTGGAAAACCTCGATaGTGGCCTTGGCAATGTTCT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYVGKPR*WPWQCS
Trigger: AGAACATTGCCAAGGCCACAATCGAGGTTTTCCAAC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGGTTGAGCCGCAGTTaGAGTGCCTCATGCATTAGC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQRLSRS*SASCIS
Trigger: GCTAATGCATGAGGCACTCAAACTGCGGCTCAACCT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTCCTCCATGCTGCCTaGCGAGATACTGGACATGTC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFLHAA*RDTGHV
Trigger: GACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGCAATCTTGTTGCCCTaGGTGTCAATAAGGGAGCCC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKAILLP*VSIREP
Trigger: GGGCTCCCTTATTGACACCAAGGGCAACAAGATTGC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCAGCAATCTTGTaGCCCTTGGTGTCAATAAGG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYKPAIL*PLVSIR
Trigger: CCTTATTGACACCAAGGGCAACAAGATTGCTGGCTT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAAAGCCAGCAATCTTGTaGCCCTTGGTGTCAATAAGG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVKPAIL*PLVSIR
Trigger: CCTTATTGACACCAAGGGCAACAAGATTGCTGGCTT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATGTAGACCCTCCTTCTaGAAGATGGAATCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVCRPSF*KMESKP
Trigger: TGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATGACAGTGGTGCTGTaGATGGCTTCAGGCCCTCAA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQMTVVL*MASGPQ
Trigger: TTGAGGGCCTGAAGCCATCAACAGCACCACTGTCAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCCTGACTCTGTATCTTaGCCTGGAGCTGTTGGCGAA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKPDSVS*PGAVGE
Trigger: TTCGCCAACAGCTCCAGGCAAAGATACAGAGTCAGG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGAGCTGTTGTTGAAGTaGCCGGACCAAAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQELLLK*PDQSCC
Trigger: ACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAATTAGAGAGCTGTTGTaGAAGTTGCCGGACCAAAGC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVIRELL*KLPDQS
Trigger: GCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAAT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATTAGAGAGCTGTTGTaGAAGTTGCCGGACCAAAGC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYIRELL*KLPDQS
Trigger: GCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGTATTAGAGAGCTGTaGTTGAAGTTGCCGGACCAA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGIREL*LKLPDQ
Trigger: TTGGTCCGGCAACTTCAACAACAGCTCTCTAATACC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGTATTAGAGAGCTGTaGTTGAAGTTGCCGGACCAA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGIREL*LKLPDQ
Trigger: TTGGTCCGGCAACTTCAACAACAGCTCTCTAATACC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp AGTCTGCAAACCATAGGAAGAACTAGGGGTCATCTGATGGACAGATaGCTGTCCCAACATCCCCTGACTCTGCTGGAGCTGTTGGCGAAG +
Preference number: 5 (lower is better)
Translates to: SLQTIGRTRGHLMDR*LSQHPLTLLELLAK
Trigger: CTTCGCCAACAGCTCCAGCAGAGTCAGGGGATGTTGGGACAGTCATCTGTCCATCAGATGACCCCTAGTTCTTCCTATGGTTTGCAGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087956.6
CDS GCA 90 bp ATGCTCAGTGAATATTCCATGAGGTCGAAGATGAACTGCACATGCTaGACCAGAGGCAAGTGGTACGACATGCCAAGGGCGAAGCTCGTG +
Preference number: 5 (lower is better)
Translates to: MLSEYSMRSKMNCTC*TRGKWYDMPRAKLV
Trigger: CACGAGCTTCGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTCACTGAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp CTGATGCTCAGTGAATATTCCATGAGGTCGAAGATGAACTGCACATaGTGCACCAGAGGCAAGTGGTACGACATGCCAAGGGCGAAGCTC +
Preference number: 5 (lower is better)
Translates to: LMLSEYSMRSKMNCT*CTRGKWYDMPRAKL
Trigger: GAGCTTCGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTCACTGAGCATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp ACGCTTGTTTTCCTCCATGCTGCCTTGCGAGATACTGGACATGTCTaGAGCCAACGTTCCGTTGATAAGCACGCTCAGCATGTCCAACAC +
Preference number: 5 (lower is better)
Translates to: TLVFLHAALRDTGHV*SQRSVDKHAQHVQH
Trigger: GTGTTGGACATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACAAGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp CTGTTACCCTCTGGCATGGGCAAGTTGGAAGGAGCAATAGGCAGGTaGTCAAGTGGTGAGCCGGTCTTAATTCGGCTATCAGTCAATGAG +
Preference number: 5 (lower is better)
Translates to: LLPSGMGKLEGAIGR*SSGEPVLIRLSVNE
Trigger: CTCATTGACTGATAGCCGAATTAAGACCGGCTCACCACTTGACCACCTGCCTATTGCTCCTTCCAACTTGCCCATGCCAGAGGGTAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGAAGTTGACGTTCTaGGCACTGCCATGTTCGTCC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLKLTF*ALPCSS
Trigger: GGACGAACATGGCAGTGCCAAGAACGTCAACTTCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGAAGTTGACGTTCTaGGCACTGCCATGTTCGTCC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLKLTF*ALPCSS
Trigger: GGACGAACATGGCAGTGCCAAGAACGTCAACTTCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGGCAGGATTGAAGTaGACGTTCTTGGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLAGLK*TFLALP
Trigger: TGGCAGTGCCAAGAACGTCAACTTCAATCCTGCCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGGCAGGATTGAAGTaGACGTTCTTGGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLAGLK*TFLALP
Trigger: TGGCAGTGCCAAGAACGTCAACTTCAATCCTGCCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTCACCAGCCAGAAGTaGTCCTTCTGGTTCATTAGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVTSQK*SFWFIR
Trigger: CCTAATGAACCAGAAGGACAACTTCTGGCTGGTGAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAACAGGCACCGTGTATTaGGCCAAATACCCAAATACT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVTGTVY*AKYPNT
Trigger: AGTATTTGGGTATTTGGCCAAATACACGGTGCCTGT...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACTCCTCCTGTGGGATaGGAAAGTGTGTGGCATACT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTPPVG*ESVWHT
Trigger: AGTATGCCACACACTTTCCAATCCCACAGGAGGAGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCCTTGGTAATCTTCTaGATGGCATGGCGGGCATCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSLVIF*MAWRAS
Trigger: TGATGCCCGCCATGCCATCAAGAAGATTACCAAGGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAACCACAAGTGCCATaGTTCGAGGAGCAGCACAAG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQKPQVP*FEEQHK
Trigger: CTTGTGCTGCTCCTCGAACAATGGCACTTGTGGTTT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAAACCACAAGTGCCATaGTTCGAGGAGCAGCACAAG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKKPQVP*FEEQHK
Trigger: CTTGTGCTGCTCCTCGAACAATGGCACTTGTGGTTT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTATTGCACAGGAGATCATaGAAACCACAAGTGCCATTG +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVLHRRS*KPQVPL
Trigger: CAATGGCACTTGTGGTTTCAATGATCTCCTGTGCAA...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCACTACAAGCAGCATaGAGGAGTGAAGGGATGGCT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSLQAA*RSEGMA
Trigger: AGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCACTACAAGCAGCATaGAGGAGTGAAGGGATGGCT +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSLQAA*RSEGMA
Trigger: AGCCATCCCTTCACTCCTCAATGCTGCTTGTAGTGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGAGTTGTGGCGTCTaGAACAGGTGGAGGAGGATT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLSCGV*NRWRRI
Trigger: AATCCTCCTCCACCTGTTCAAGACGCCACAACTCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTCAGACTGGCAAGGATaGAGTTGTGGCGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSDWQG*SCGVLN
Trigger: GTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCAGACTGGCAAGGATaGAGTTGTGGCGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSDWQG*SCGVLN
Trigger: GTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTTTCTCCATCCTCATaGTCCAGCAGTCGATGTGGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKFSPSS*SSSRCG
Trigger: CCCACATCGACTGCTGGACAATGAGGATGGAGAAAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTTTCTCCATCCTCATaGTCCAGCAGTCGATGTGGG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFSPSS*SSSRCG
Trigger: CCCACATCGACTGCTGGACAATGAGGATGGAGAAAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACCTCGATTGTGGCCTaGGCAATGTTCTCCAAGAGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTSIVA*AMFSKR
Trigger: TCTCTTGGAGAACATTGCCAAGGCCACAATCGAGGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGCTGGGCATGTTGCTaGCTGTACTTCCAGAAGATG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCWACC*LYFQKM
Trigger: CATCTTCTGGAAGTACAGCAAGCAACATGCCCAGCA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGCTGGGCATGTTGCTaGCTGTACTTCCAGAAGATG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCWACC*LYFQKM
Trigger: CATCTTCTGGAAGTACAGCAAGCAACATGCCCAGCA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACTTCATATATGCACGCTaGTTTTCCTCCATGCTGCCT +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYFIYAR*FSSMLP
Trigger: AGGCAGCATGGAGGAAAACAAGCGTGCATATATGAA...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGGTAGACTTCTTTTaGCGCTCCTCAGTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLVDFF*RSSVLG
Trigger: TCCGAGCACTGAGGAGCGCAAAAAGAAGTCTACCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGGTAGACTTCTTTTaGCGCTCCTCAGTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLVDFF*RSSVLG
Trigger: TCCGAGCACTGAGGAGCGCAAAAAGAAGTCTACCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGCTGGCTGCGTTTTTaGCCCTTGGTAGACTTCTTT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGWLRF*PLVDFF
Trigger: AAAGAAGTCTACCAAGGGCAAAAAACGCAGCCAGCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGATAAGTTGGTCGAGTaGGCAGCTTTTGCATTGGTA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYDKLVE*AAFALV
Trigger: TACCAATGCAAAAGCTGCCAACTCGACCAACTTATC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGATAAGTTGGTCGAGTaGGCAGCTTTTGCATTGGTA +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVDKLVE*AAFALV
Trigger: TACCAATGCAAAAGCTGCCAACTCGACCAACTTATC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTCTACAAGAGTAGGATaGGTAGAAGGGTGGGTGCTC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTRVG*VEGWVL
Trigger: GAGCACCCACCCTTCTACCAATCCTACTCTTGTAGA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087948.11
ENSMUST00000117203.8
CDS GCA 90 bp GCGCTCCCCCAAGTCCTTCTGAAGCTTCTTCACCAGGTTCATATATaGACGCTTGTTTTCCTCCATGCTGCCTTGCGAGATACTGGACAT +
Preference number: 5 (lower is better)
Translates to: ALPQVLLKLLHQVHI*TLVFLHAALRDTGH
Trigger: ATGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACAAGCGTGCATATATGAACCTGGTGAAGAAGCTTCAGAAGGACTTGGGGGAGCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp AAGTCAGAGCGCTCGAAACTATGGCTATCCAGCACTTCTAAAGTATaGAGCACCCGTCCAATGGTGAAACCTGCAGTAGCTTCCTGGCAC +
Preference number: 5 (lower is better)
Translates to: KSERSKLWLSSTSKV*STRPMVKPAVASWH
Trigger: GTGCCAGGAAGCTACTGCAGGTTTCACCATTGGACGGGTGCTCCATACTTTAGAAGTGCTGGATAGCCATAGTTTCGAGCGCTCTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TCCTGTGGGATTGGAAAGTGTGTGGCATACTGCACATGTCGTGGCTaGTCATACAGAATCCCAAGTGTCCCCTCGATCTTCTCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: SCGIGKCVAYCTCRG*SYRIPSVPSIFSLA
Trigger: AGCCAAAGAGAAGATCGAGGGGACACTTGGGATTCTGTATGACCAGCCACGACATGTGCAGTATGCCACACACTTTCCAATCCCACAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTGATCTTGGCAGGATaGAAGTTGACGTTCTTGGCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLILAG*KLTFLA
Trigger: TGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCTGATCTTGGCAGGATaGAAGTTGACGTTCTTGGCA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLILAG*KLTFLA
Trigger: TGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATGATGCTGCTGAAGTaGGAACTGATCTTGGCAGGA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKMMLLK*ELILAG
Trigger: TCCTGCCAAGATCAGTTCCAACTTCAGCAGCATCAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCTCTTCTCTAGGAGTTaGGCTACTACCATAGCACGA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLFSRS*ATTIAR
Trigger: TCGTGCTATGGTAGTAGCCAAACTCCTAGAGAAGAG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACACCTTCAGGATATCCTaGGTAATCTTCTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYTFRIS*VIFLMA
Trigger: TGCCATCAAGAAGATTACCAAGGATATCCTGAAGGT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAGTACAAACACAGCCTaGAGAACAGCAAACACAGCC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQSTNTA*RTANTA
Trigger: GGCTGTGTTTGCTGTTCTCAAGGCTGTGTTTGTACT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGAGTACAAACACAGCCTaGAGAACAGCAAACACAGCC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKSTNTA*RTANTA
Trigger: GGCTGTGTTTGCTGTTCTCAAGGCTGTGTTTGTACT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATAGACATCCAGACTaGCTGTCTCCACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHRHPD*LSPQRC
Trigger: ACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCATAGACATCCAGACTaGCTGTCTCCACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHRHPD*LSPQRC
Trigger: ACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGGTCTTGTAGATCATaGCTATCCTCACACAGTGAC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGSCRS*LSSHSD
Trigger: GTCACTGTGTGAGGATAGCAATGATCTACAAGACCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGGGTCTTGTAGATCATaGCTATCCTCACACAGTGAC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQGSCRS*LSSHSD
Trigger: GTCACTGTGTGAGGATAGCAATGATCTACAAGACCC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTTGGAAAACCTCGATaGTGGCCTTGGCAATGTTCT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVGKPR*WPWQCS
Trigger: AGAACATTGCCAAGGCCACAATCGAGGTTTTCCAAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGAAGCCAGCAATCTTGTaGCCCTTGGTGTCAATAAGG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQKPAIL*PLVSIR
Trigger: CCTTATTGACACCAAGGGCAACAAGATTGCTGGCTT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTGTAGACCCTCCTTCTaGAAGATGGAATCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKCRPSF*KMESKP
Trigger: TGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTGTAGACCCTCCTTCTaGAAGATGGAATCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQCRPSF*KMESKP
Trigger: TGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACGGAGAGATCTTTTGTTaGGTAGAAACTTGTAGACCC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYGEIFC*VETCRP
Trigger: GGGTCTACAAGTTTCTACCAAACAAAAGATCTCTCC...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTAGGAGAGATCTTTTGTTaGGTAGAAACTTGTAGACCC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVGEIFC*VETCRP
Trigger: GGGTCTACAAGTTTCTACCAAACAAAAGATCTCTCC...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATTAGAGAGCTGTTGTaGAAGTTGCCGGACCAAAGC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQIRELL*KLPDQS
Trigger: GCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGTATTAGAGAGCTGTaGTTGAAGTTGCCGGACCAA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGIREL*LKLPDQ
Trigger: TTGGTCCGGCAACTTCAACAACAGCTCTCTAATACC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp ATCATAGAGATAAGCAAGGATACAGCGCTCTGCAGAGGAGCCATCTaGACGGTTCATTCCATGTTTCACCACGCCACAGAGCCCCTCAAA +
Preference number: 5 (lower is better)
Translates to: IIEISKDTALCRGAI*TVHSMFHHATEPLK
Trigger: TTTGAGGGGCTCTGTGGCGTGGTGAAACATGGAATGAACCGTTCAGATGGCTCCTCTGCAGAGCGCTGTATCCTTGCTTATCTCTATGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TCACAGGAGGACCGGATTCCAACAGTAGGTTTGTTTCCATCAGACTaGCAAGGATTGAGTTGTGGCGTCTTGAACAGGTGGAGGAGGATT +
Preference number: 5 (lower is better)
Translates to: SQEDRIPTVGLFPSD*QGLSCGVLNRWRRI
Trigger: AATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGGAATCCGGTCCTCCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TTGCTTGCTGTACTTCCAGAAGATGACCCCGTCTCTGCTGACTGTTaGAAAACCTCGATTGTGGCCTTGGCAATGTTCTCCAAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: LLAVLPEDDPVSADC*KTSIVALAMFSKRE
Trigger: CTCTCTCTTGGAGAACATTGCCAAGGCCACAATCGAGGTTTTCCAACAGTCAGCAGAGACGGGGTCATCTTCTGGAAGTACAGCAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACAGGCACCGTGTATTaGGCCAAATACCCAAATACT +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTGTVY*AKYPNT
Trigger: AGTATTTGGGTATTTGGCCAAATACACGGTGCCTGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGTTGCACAGGAGATCATaGAAACCACAAGTGCCATTG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKLHRRS*KPQVPL
Trigger: CAATGGCACTTGTGGTTTCAATGATCTCCTGTGCAA...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTGCACAGGAGATCATaGAAACCACAAGTGCCATTG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQLHRRS*KPQVPL
Trigger: CAATGGCACTTGTGGTTTCAATGATCTCCTGTGCAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATTAGCTGCTTTGGTTaGCAATCATCTAAGTACTGG +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYISCFG*QSSKYW
Trigger: CCAGTACTTAGATGATTGCAAACCAAAGCAGCTAAT...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATGCATTAGCTGCTTaGGTTTGCAATCATCTAAGT +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHALAA*VCNHLS
Trigger: ACTTAGATGATTGCAAACCAAAGCAGCTAATGCATG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGTTCATATATGCACGCTaGTTTTCCTCCATGCTGCCT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQFIYAR*FSSMLP
Trigger: AGGCAGCATGGAGGAAAACAAGCGTGCATATATGAA...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGATAAGTTGGTCGAGTaGGCAGCTTTTGCATTGGTA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKDKLVE*AAFALV
Trigger: TACCAATGCAAAAGCTGCCAACTCGACCAACTTATC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGATAAGTTGGTCGAGTaGGCAGCTTTTGCATTGGTA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQDKLVE*AAFALV
Trigger: TACCAATGCAAAAGCTGCCAACTCGACCAACTTATC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGGTACTTTGTGATGATTaGAGTCCATTCAGTGAAGGG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQVLCDD*SPFSEG
Trigger: CCCTTCACTGAATGGACTCAAATCATCACAAAGTAC...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGTACTTTGTGATGATTaGAGTCCATTCAGTGAAGGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKVLCDD*SPFSEG
Trigger: CCCTTCACTGAATGGACTCAAATCATCACAAAGTAC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACCTTCAGGATATCCTaGGTAATCTTCTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTFRIS*VIFLMA
Trigger: TGCCATCAAGAAGATTACCAAGGATATCCTGAAGGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACCTTCAGGATATCCTaGGTAATCTTCTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTFRIS*VIFLMA
Trigger: TGCCATCAAGAAGATTACCAAGGATATCCTGAAGGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACCATTGGTCTAAATTCTaGAGAATACGTTTAATGCGC +
Preference number: 5 (lower is better)
Translates to: AQEGDWELSRKAGPHPVYHWSKF*RIRLMR
Trigger: GCGCATTAAACGTATTCTCAAGAATTTAGACCAATG...GTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CGCCCAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACATTGGTCTAAATTCTaGAGAATACGTTTAATGCGC +
Preference number: 5 (lower is better)
Translates to: RPGRGLGIKQKGWATSSVHWSKF*RIRLMR
Trigger: GCGCATTAAACGTATTCTCAAGAATTTAGACCAATG...TACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTGGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGGGAGAGATCTTTTGTTaGGTAGAAACTTGTAGACCC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKGEIFC*VETCRP
Trigger: GGGTCTACAAGTTTCTACCAAACAAAAGATCTCTCC...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp TCTTGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATTaGAACCTTGTTTTACATTCAAAGCCGTCAGTTCATCCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: SWHCHVRPQRQQAGY*NLVLHSKPSVHPPS
Trigger: AGAAGGAGGATGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 90 bp ACTTATCAAAAGACCAGCGAACCTCAACTGCTTGTCCACGCTCCTTaGTCTGTTGTTCGATCTCTCGTAATTTTGCACGGACCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: TYQKTSEPQLLVHAP*SVVRSLVILHGPAE
Trigger: CTCAGCAGGTCCGTGCAAAATTACGAGAGATCGAACAACAGATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGGTCTTTTGATAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TTGACGTTCTTGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGCTaGTTATTGAAACCTTGTTTTACATTCAAAGCCGTCAGTTCATCC +
Preference number: 5 (lower is better)
Translates to: LTFLALPCSSPETAG*LLKPCFTFKAVSSS
Trigger: GGATGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAAGAACGTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp CAAAGGGAGTCAAGAGAGTTACTAAAGTCAGAGCGCTCGAAACTATaGCTATCCAGCACTTCTAAAGTATGGAGCACCCGTCCAATGGTG +
Preference number: 5 (lower is better)
Translates to: QRESRELLKSERSKL*LSSTSKVWSTRPMV
Trigger: CACCATTGGACGGGTGCTCCATACTTTAGAAGTGCTGGATAGCCATAGTTTCGAGCGCTCTGACTTTAGTAACTCTCTTGACTCCCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGACAGCAGGCTGGTTATaGAAACCTTGTTTTACATTC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQTAGWL*KPCFTF
Trigger: GAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGACAGCAGGCTGGTTATaGAAACCTTGTTTTACATTC +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKTAGWL*KPCFTF
Trigger: GAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGATTAGCTGCTTTGGTTaGCAATCATCTAAGTACTGG +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKISCFG*QSSKYW
Trigger: CCAGTACTTAGATGATTGCAAACCAAAGCAGCTAAT...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGATTAGCTGCTTTGGTTaGCAATCATCTAAGTACTGG +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQISCFG*QSSKYW
Trigger: CCAGTACTTAGATGATTGCAAACCAAAGCAGCTAAT...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp CAGGAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCATGCATTAGCTGCTTaGGTTTGCAATCATCTAAGT +
Preference number: 5 (lower is better)
Translates to: QEGDWELSRKAGPHPVYKHALAA*VCNHLS
Trigger: ACTTAGATGATTGCAAACCAAAGCAGCTAATGCATG...CTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATGCATTAGCTGCTTaGGTTTGCAATCATCTAAGT +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHALAA*VCNHLS
Trigger: ACTTAGATGATTGCAAACCAAAGCAGCTAATGCATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 90 bp ATGTTAGCACCAGTGATAAGAAAGGCTGTTGGCTCAACAGGGACATaGTCTTCTGTTTCTGTCGATCTCGTTCTTTACGGGAAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: MLAPVIRKAVGSTGT*SSVSVDLVLYGKKS
Trigger: GCTCTTCTTCCCGTAAAGAACGAGATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCCAACAGCCTTTCTTATCACTGGTGCTAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp TCCTGTCCTTTCAGACATGTTAGCACCAGTGATAAGAAAGGCTGTTaGCTCAACAGGGACATGCTCTTCTGTTTCTGTCGATCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: SCPFRHVSTSDKKGC*LNRDMLFCFCRSRS
Trigger: AGAACGAGATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCCAACAGCCTTTCTTATCACTGGTGCTAACATGTCTGAAAGGACAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS-3UTR CAA 90 bp GAAGGGGACTGGGAATTAAGCAGAAAGGCTGGGCCACATCCAGTGTACAAGCAGCATTGGTCTAAATTCTaGAGAATACGTTTAATGCGC +
Preference number: 5 (lower is better)
Translates to: EGDWELSRKAGPHPVYKQHWSKF*RIRLMR
Trigger: GCGCATTAAACGTATTCTCAAGAATTTAGACCAATG...CTGCTTGTACACTGGATGTGGCCCAGCCTTTCTGCTTAATTCCCAGTCCCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp GTGTTGGGGGTCTGCTTGATCATCAACTGTAGCTCCAAAGAGGACTaGCGCATGGTCCATTGGTCTAAATTCTTGAGAATACGTTTAATG +
Preference number: 5 (lower is better)
Translates to: VLGVCLIINCSSKED*RMVHWSKFLRIRLM
Trigger: CATTAAACGTATTCTCAAGAATTTAGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCTACAGTTGATGATCAAGCAGACCCCCAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 90 bp AGTGCCTCATGCATTAGCTGCTTTGGTTTGCAATCATCTAAGTACTaGTTTTCTCGCCAATTAATCACAATCTGGTGCACCTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: SASCISCFGLQSSKY*FSRQLITIWCTWLW
Trigger: CCACAGCCAGGTGCACCAGATTGTGATTAATTGGCGAGAAAACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAATGCATGAGGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp CTGTCACACCATAGGGGCCACTCCGACCTGGCCCCATaGCATAGTCCTCGTTCTTGGTGGCTGGCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: LSHHRGHSDLAP*HSPRSWWLAGC
Trigger: GCAGCCAGCCAGCCACCAAGAACGAGGACTATGGCATGGGGCCAGGTCGGAGTGGCCCCTATGGTGTGACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GGCTGGGGTTGGGGAGGAGCTGCCTGCTGCTGCTGCTaGTGTGGCTGCTGCTGCTGCTGTTGCTGTTGTTGT +
Preference number: 6 (lower is better)
Translates to: GWGWGGAACCCC*CGCCCCCCCCC
Trigger: ACAACAACAGCAACAGCAGCAGCAGCAGCCACACCAGCAGCAGCAGCAGGCAGCTCCTCCCCAACCCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CCATCCACGATGCGGTTCTGGGAGGCAGCCAGCAGGTaGCGGTCACAGGAGGACCGGATTCCAACAGTAGGT +
Preference number: 6 (lower is better)
Translates to: PSTMRFWEAASR*RSQEDRIPTVG
Trigger: ACCTACTGTTGGAATCCGGTCCTCCTGTGACCGCCACCTGCTGGCTGCCTCCCAGAACCGCATCGTGGATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TGGAGGCACTGTCACACCATAGGGGCCACTCCGACCTaGCCCCATGCCATAGTCCTCGTTCTTGGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: WRHCHTIGATPT*PHAIVLVLGGW
Trigger: CCAGCCACCAAGAACGAGGACTATGGCATGGGGCCAGGTCGGAGTGGCCCCTATGGTGTGACAGTGCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp GAGGCAAGTGGTACGACATGCCAAGGGCGAAGCTCGTaGTCTGCTCCAGAACGTTCCGGGAGACCTGAGCCG +
Preference number: 6 (lower is better)
Translates to: EASGTTCQGRSS*SAPERSGRPEP
Trigger: CGGCTCAGGTCTCCCGGAACGTTCTGGAGCAGATCACGAGCTTCGCCCTTGGCATGTCGTACCACTTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GTGGGGAAGGCTTCGGGCCGGTTGCGTCGTCGCTTCTaGCCATCTTCCCCACCTAAGAATGTCAGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: VGKASGRLRRRF*PSSPPKNVRSP
Trigger: TGGAGACCTGACATTCTTAGGTGGGGAAGATGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCTTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CGCTGCTTCCCCACCCCAAACAGTACGACCAACCGCTaGTTGCACTCATGGCTGCATGACTCCTCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: RCFPTPNSTTNR*LHSWLHDSSCG
Trigger: CCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TGCTCAGGCAGGATGGAAGTTGAACGGACGCCTGCCTaGACACCCTGGGCACTCAACGGAGTCATGGTACCC +
Preference number: 6 (lower is better)
Translates to: CSGRMEVERTPA*TPWALNGVMVP
Trigger: GGGTACCATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GCTGCTGCTGCTGTTGTTGTTGCTGCTGCTCAGGCAGGATGGAAGTaGAACGGACGCCTGCCTGGACACCCTGGGCACTCAACGGAGTCA +
Preference number: 6 (lower is better)
Translates to: AAAAVVVAAAQAGWK*NGRLPGHPGHSTES
Trigger: TGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp AAAGCCGTCAGTTCATCCTCCTTCTGTTTGGGATCTTaGGGGTACACATCGGGAGGCCCCAGCCGCAGCCGC +
Preference number: 6 (lower is better)
Translates to: KAVSSSSFCLGS*GYTSGGPSRSR
Trigger: GCGGCTGCGGCTGGGGCCTCCCGATGTGTACCCTCAAGATCCCAAACAGAAGGAGGATGAACTGACGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp ACCTGGCTGTGGAGGGAGGCCAGGAGTCCCTCGCGCTaGTCATCCTGTCCTTTCAGACATGTTAGCACCAGT +
Preference number: 6 (lower is better)
Translates to: TWLWREARSPSR*SSCPFRHVSTS
Trigger: ACTGGTGCTAACATGTCTGAAAGGACAGGATGAGCAGCGCGAGGGACTCCTGGCCTCCCTCCACAGCCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GGCTGCTGCTGCTGCTGTTGCTGTTGTTGTTGCTGCTaGTGCTGTTGCTGCTGCTGCTGCCGTAGCATCTGC +
Preference number: 6 (lower is better)
Translates to: GCCCCCCCCCCC*CCCCCCCRSIC
Trigger: GCAGATGCTACGGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAGCAGCAGCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CAAAGCCGTCAGTTCATCCTCCTTCTGTTTGGGATCTaGAGGGTACACATCGGGAGGCCCCAGCCGCAGCCG +
Preference number: 6 (lower is better)
Translates to: QSRQFILLLFGI*RVHIGRPQPQP
Trigger: CGGCTGCGGCTGGGGCCTCCCGATGTGTACCCTCAAGATCCCAAACAGAAGGAGGATGAACTGACGGCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GTTGGCAGATGCTTCGCAGCACGTACTTGGCATAGACATCCAGACTaGCTGTCTCCACAGAGATGTTGCGGCCACCCTGTCTCCGACCGC +
Preference number: 6 (lower is better)
Translates to: VGRCFAARTWHRHPD*LSPQRCCGHPVSDR
Trigger: GCGGTCGGAGACAGGGTGGCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGCATCTGCCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp CTGTTGTTGTTGCTGCTGCTCAGGCAGGATGGAAGTTaGACGGACGCCTGCCTGGACACCCTGGGCACTCAA +
Preference number: 6 (lower is better)
Translates to: LLLLLLLRQDGS*TDACLDTLGTQ
Trigger: TTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp ATTCAGAGAGCCCTGGGTCCTCTAGCTTGCTGCTGCTaGTGCCTTCAGCCTCCTTGCGCTCTGGATCATCTG +
Preference number: 6 (lower is better)
Translates to: IQRALGPLACCC*CLQPPCALDHL
Trigger: CAGATGATCCAGAGCGCAAGGAGGCTGAAGGCAGCAGCAGCAGCAAGCTAGAGGACCCAGGGCTCTCTGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GCTTCCCCACCCCAAACAGTACGACCAACCGCTGGTTaGACTCATGGCTGCATGACTCCTCCTGTGGGATTG +
Preference number: 6 (lower is better)
Translates to: ASPPQTVRPTAG*THGCMTPPVGL
Trigger: CAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp TGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGCTaGTCAGGCAGGATGGAAGTTGAACGGACGCCTGCC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*SGRMEVERTPA
Trigger: GGCAGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GGAGCTGTTGGCGAAGGCGCTGTCCCTGGGGCACTGTaGGTTGCTGCTGCCGGTATACAGATGTCTTATAAG +
Preference number: 6 (lower is better)
Translates to: GAVGEGAVPGAL*VAAAGIQMSYK
Trigger: CTTATAAGACATCTGTATACCGGCAGCAGCAACCCACAGTGCCCCAGGGACAGCGCCTTCGCCAACAGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp AGGATGGAAGTTGAACGGACGCCTGCCTGGACACCCTaGGCACTCAACGGAGTCATGGTACCCATCATGGGT +
Preference number: 6 (lower is better)
Translates to: RMEVERTPAWTP*ALNGVMVPIMG
Trigger: ACCCATGATGGGTACCATGACTCCGTTGAGTGCCCAGGGTGTCCAGGCAGGCGTCCGTTCAACTTCCATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp CTAAAGGGAGTCGAGGGTGTACTGCTAGTTGGGGGCTaGGGTGCTGGGGTAGTGGGCAGAGAACTTGTTGAC +
Preference number: 6 (lower is better)
Translates to: LKGVEGVLLVGG*GAGVVGRELVD
Trigger: GTCAACAAGTTCTCTGCCCACTACCCCAGCACCTCAGCCCCCAACTAGCAGTACACCCTCGACTCCCTTTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GTAATCTTCTTGATGGCATGGCGGGCATCATCTCGCTaGTTCCCCACCCCAAACAGTACGACCAACCGCTGG +
Preference number: 6 (lower is better)
Translates to: VIFLMAWRASSR*FPTPNSTTNRW
Trigger: CCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCAGCGAGATGATGCCCGCCATGCCATCAAGAAGATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp AAATATCTTCAGCAGTGGGGAAGGCTTCGGGCCGGTTaGGTCGTCGCTTCTGCCCATCTTCCCCACCTAAGA +
Preference number: 6 (lower is better)
Translates to: KYLQQWGRLRAG*VVASAHLPHLR
Trigger: TCTTAGGTGGGGAAGATGGGCAGAAGCGACGACGCAACCGGCCCGAAGCCTTCCCCACTGCTGAAGATATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp TGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTaGTGCTCAGGCAGGATGGAAGTTGAACGGACGCCT +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CSGRMEVERTP
Trigger: AGGCGTCCGTTCAACTTCCATCCTGCCTGAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GACTGGCAAGGATTGAGTTGTGGCGTCTTGAACAGGTaGAGGAGGATTCGGCAAGTAAGCCTGGCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: DWQGLSCGVLNR*RRIRQVSLAPG
Trigger: GCCAGGAGCCAGGCTTACTTGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TCCACAGTGCCGCTGATGATGATCTCAAGGAGAAGCTaGGCCCACTCTGTAGTCTGCTGGGTACTACGCTGC +
Preference number: 6 (lower is better)
Translates to: STVPLMMISRRS*AHSVVCWVLRC
Trigger: GCAGCGTAGTACCCAGCAGACTACAGAGTGGGCCCAGCTTCTCCTTGAGATCATCATCAGCGGCACTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CTGGGGGCAGAGGTAGTGGTTCCAGGTAATAGGCTCTaGGTCGAGGCCTCAGGTGGGTATGATAGAGCAACA +
Preference number: 6 (lower is better)
Translates to: LGAEVVVPGNRL*VEASGGYDRAT
Trigger: TGTTGCTCTATCATACCCACCTGAGGCCTCGACCCAGAGCCTATTACCTGGAACCACTACCTCTGCCCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TGCTTCCCCACCCCAAACAGTACGACCAACCGCTGGTaGCACTCATGGCTGCATGACTCCTCCTGTGGGATT +
Preference number: 6 (lower is better)
Translates to: CFPTPNSTTNRW*HSWLHDSSCGI
Trigger: AATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TCCATGTTTCACCACGCCACAGAGCCCCTCAAACACTaGCGCCATCTGGTCCTGATTGAGGATGAGGCAGGC +
Preference number: 6 (lower is better)
Translates to: SMFHHATEPLKH*RHLVLIEDEAG
Trigger: GCCTGCCTCATCCTCAATCAGGACCAGATGGCGCAAGTGTTTGAGGGGCTCTGTGGCGTGGTGAAACATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp TCATCTCGCTGCTTCCCCACCCCAAACAGTACGACCAACCGCTGGTaGCACTCATGGCTGCATGACTCCTCCTGTGGGATTGGAAAGTGT +
Preference number: 6 (lower is better)
Translates to: SSRCFPTPNSTTNRW*HSWLHDSSCGIGKC
Trigger: ACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTGGGGTGGGGAAGCAGCGAGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GGCAGGGTTCTCCAGAGTGTCAATCATGAACTCCGGTaGCCAGCGCATATTGGATTCCGATGGCTCCACGTT +
Preference number: 6 (lower is better)
Translates to: GRVLQSVNHELR*PAHIGFRWLHV
Trigger: AACGTGGAGCCATCGGAATCCAATATGCGCTGGGCACCGGAGTTCATGATTGACACTCTGGAGAACCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GCTTCGCAGCACGTACTTGGCATAGACATCCAGACTTaGTGTCTCCACAGAGATGTTGCGGCCACCCTGTCT +
Preference number: 6 (lower is better)
Translates to: ASQHVLGIDIQT*CLHRDVAATLS
Trigger: AGACAGGGTGGCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp ATTAGAGAGCTGTTGTTGAAGTTGCCGGACCAAAGCTaGTGTCTGTTGCTGCTGCTGGGTCTGCTGCAGGCC +
Preference number: 6 (lower is better)
Translates to: IRELLLKLPDQS*CLLLLLGLLQA
Trigger: GGCCTGCAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TGCACGGACCTGCTGAGTAAAGGCACTGTTACCCTCTaGCATGGGCAAGTTGGAAGGAGCAATAGGCAGGTG +
Preference number: 6 (lower is better)
Translates to: CTDLLSKGTVTL*HGQVGRSNRQV
Trigger: CACCTGCCTATTGCTCCTTCCAACTTGCCCATGCCAGAGGGTAACAGTGCCTTTACTCAGCAGGTCCGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TCGAAGATGAACTGCACATGCTGCACCAGAGGCAAGTaGTACGACATGCCAAGGGCGAAGCTCGTGATCTGC +
Preference number: 6 (lower is better)
Translates to: SKMNCTCCTRGK*YDMPRAKLVIC
Trigger: GCAGATCACGAGCTTCGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TGCTTCGCAGCACGTACTTGGCATAGACATCCAGACTaGCTGTCTCCACAGAGATGTTGCGGCCACCCTGTC +
Preference number: 6 (lower is better)
Translates to: CFAARTWHRHPD*LSPQRCCGHPV
Trigger: GACAGGGTGGCCGCAACATCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CACCGGGATAAGTTGGTCGAGTTGGCAGCTTTTGCATaGGTAATCGCACGGGGCGGTATGGATCCACACGAG +
Preference number: 6 (lower is better)
Translates to: HRDKLVELAAFA*VIARGGMDPHE
Trigger: CTCGTGTGGATCCATACCGCCCCGTGCGATTACCAATGCAAAAGCTGCCAACTCGACCAACTTATCCCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp GGGCTGTGGCTGGGTATTAGAGAGCTGTTGTTGAAGTaGCCGGACCAAAGCTGCTGTCTGTTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: GLWLGIRELLLK*PDQSCCLLLLL
Trigger: CAGCAGCAGCAACAGACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAATACCCAGCCACAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp GGTGCTGGGCTGTGGCTGGGTATTAGAGAGCTGTTGTaGAAGTTGCCGGACCAAAGCTGCTGTCTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: GAGLWLGIRELL*KLPDQSCCLLL
Trigger: CAGCAACAGACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTAATACCCAGCCACAGCCCAGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp TTCTCCATCCTCATTGTCCAGCAGTCGATGTGGGTAGCAGATAAGTaGCATGAGGCGCTGGGCCTGGGCACTACTCAACACTGGGTCTTG +
Preference number: 6 (lower is better)
Translates to: FSILIVQQSMWVADK*HEALGLGTTQHWVL
Trigger: CAAGACCCAGTGTTGAGTAGTGCCCAGGCCCAGCGCCTCATGCAACTTATCTGCTACCCACATCGACTGCTGGACAATGAGGATGGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp AAGTGTGAGCGGCAGGGTTCTCCAGAGTGTCAATCATaGACTCCGGTGCCCAGCGCATATTGGATTCCGATG +
Preference number: 6 (lower is better)
Translates to: KCERQGSPECQS*TPVPSAYWIPM
Trigger: CATCGGAATCCAATATGCGCTGGGCACCGGAGTTCATGATTGACACTCTGGAGAACCCTGCCGCTCACACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp CAAACAGTACGACCAACCGCTGGTTGCACTCATGGCTaGATGACTCCTCCTGTGGGATTGGAAAGTGTGTGG +
Preference number: 6 (lower is better)
Translates to: QTVRPTAGCTHG*MTPPVGLESVW
Trigger: CCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCGGTTGGTCGTACTGTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GGAGCCTGTGTATCCAGAAACTGCAGGAGGACATCCTaGAAAATGGGTGCACTAGGAGCGGAAAGGGAACCA +
Preference number: 6 (lower is better)
Translates to: GACVSRNCRRTS*KMGALGAEREP
Trigger: TGGTTCCCTTTCCGCTCCTAGTGCACCCATTTTCCAGGATGTCCTCCTGCAGTTTCTGGATACACAGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CACCCTGGGCACTCAACGGAGTCATGGTACCCATCATaGGTGTCTGCTGCAGTGTCTGGTGTGAAAACCTTT +
Preference number: 6 (lower is better)
Translates to: HPGHSTESWYPS*VSAAVSGVKTF
Trigger: AAAGGTTTTCACACCAGACACTGCAGCAGACACCCATGATGGGTACCATGACTCCGTTGAGTGCCCAGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp GGTTGCACTCATGGCTGCATGACTCCTCCTGTGGGATaGGAAAGTGTGTGGCATACTGCACATGTCGTGGCT +
Preference number: 6 (lower is better)
Translates to: GCTHGCMTPPVG*ESVWHTAHVVA
Trigger: AGCCACGACATGTGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCCATGAGTGCAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CCTTTTAGCTCCGCATCTCCGAGTACAAACACAGCCTaGAGAACAGCAAACACAGCCCCATCCACGATGCGG +
Preference number: 6 (lower is better)
Translates to: PFSSASPSTNTA*RTANTAPSTMR
Trigger: CCGCATCGTGGATGGGGCTGTGTTTGCTGTTCTCAAGGCTGTGTTTGTACTCGGAGATGCGGAGCTAAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CCAGATCGCTCTAGAGAGCTGAGCACAGGTTTGGTCTaGCTGCTGCTGGGCATGTTGCTTGCTGTACTTCCA +
Preference number: 6 (lower is better)
Translates to: PDRSRELSTGLV*LLLGMLLAVLP
Trigger: TGGAAGTACAGCAAGCAACATGCCCAGCAGCAGCAAGACCAAACCTGTGCTCAGCTCTCTAGAGCGATCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp ACGGTTCATTCCATGTTTCACCACGCCACAGAGCCCCTCAAACACTaGCGCCATCTGGTCCTGATTGAGGATGAGGCAGGCATGATAGTG +
Preference number: 6 (lower is better)
Translates to: TVHSMFHHATEPLKH*RHLVLIEDEAGMIV
Trigger: CACTATCATGCCTGCCTCATCCTCAATCAGGACCAGATGGCGCAAGTGTTTGAGGGGCTCTGTGGCGTGGTGAAACATGGAATGAACCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GTAGGTTTGTTTCCATCAGACTGGCAAGGATTGAGTTGTGGCGTCTaGAACAGGTGGAGGAGGATTCGGCAAGTAAGCCTGGCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: VGLFPSDWQGLSCGV*NRWRRIRQVSLAPG
Trigger: GCCAGGAGCCAGGCTTACTTGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp ACCATAGGAAGAACTAGGGGTCATCTGATGGACAGATaGCTGTCCCAACATCCCCTGACTCTGCTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: TIGRTRGHLMDR*LSQHPLTLLEL
Trigger: CAGCTCCAGCAGAGTCAGGGGATGTTGGGACAGTCATCTGTCCATCAGATGACCCCTAGTTCTTCCTATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087956.6
CDS GCA 72 bp GAATATTCCATGAGGTCGAAGATGAACTGCACATGCTaGACCAGAGGCAAGTGGTACGACATGCCAAGGGCG +
Preference number: 6 (lower is better)
Translates to: EYSMRSKMNCTC*TRGKWYDMPRA
Trigger: CGCCCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp TTCCTCCATGCTGCCTTGCGAGATACTGGACATGTCTaGAGCCAACGTTCCGTTGATAAGCACGCTCAGCAT +
Preference number: 6 (lower is better)
Translates to: FLHAALRDTGHV*SQRSVDKHAQH
Trigger: ATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TCTGGCATGGGCAAGTTGGAAGGAGCAATAGGCAGGTaGTCAAGTGGTGAGCCGGTCTTAATTCGGCTATCA +
Preference number: 6 (lower is better)
Translates to: SGMGKLEGAIGR*SSGEPVLIRLS
Trigger: TGATAGCCGAATTAAGACCGGCTCACCACTTGACCACCTGCCTATTGCTCCTTCCAACTTGCCCATGCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CTACTCGCTCACTTTCACTTCGGGGATCAGTCAGCATaGGAGCCTGTGTATCCAGAAACTGCAGGAGGACAT +
Preference number: 6 (lower is better)
Translates to: LLAHFHFGDQSA*EPVYPETAGGH
Trigger: ATGTCCTCCTGCAGTTTCTGGATACACAGGCTCCCATGCTGACTGATCCCCGAAGTGAAAGTGAGCGAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GGCTGCATGACTCCTCCTGTGGGATTGGAAAGTGTGTaGCATACTGCACATGTCGTGGCTGGTCATACAGAA +
Preference number: 6 (lower is better)
Translates to: GCMTPPVGLESV*HTAHVVAGHTE
Trigger: TTCTGTATGACCAGCCACGACATGTGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTCATGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CCCATTCCTGTTGGCAGATGCTTCGCAGCACGTACTTaGCATAGACATCCAGACTTGCTGTCTCCACAGAGA +
Preference number: 6 (lower is better)
Translates to: PIPVGRCFAART*HRHPDLLSPQR
Trigger: TCTCTGTGGAGACAGCAAGTCTGGATGTCTATGCCAAGTACGTGCTGCGAAGCATCTGCCAACAGGAATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TTGGAACTGATCTTGGCAGGATTGAAGTTGACGTTCTaGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGC +
Preference number: 6 (lower is better)
Translates to: LELILAGLKLTF*ALPCSSPETAG
Trigger: GCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAGTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CAGAACGTTCCGGGAGACCTGAGCCGTGACCTGGTGTaGGTCATAATGGGAAAGGTGCTGGAACTTAGCAAA +
Preference number: 6 (lower is better)
Translates to: QNVPGDLSRDLV*VIMGKVLELSK
Trigger: TTTGCTAAGTTCCAGCACCTTTCCCATTATGACCAACACCAGGTCACGGCTCAGGTCTCCCGGAACGTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TGGCGGTCACAGGAGGACCGGATTCCAACAGTAGGTTaGTTTCCATCAGACTGGCAAGGATTGAGTTGTGGC +
Preference number: 6 (lower is better)
Translates to: WRSQEDRIPTVG*FPSDWQGLSCG
Trigger: GCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGGAATCCGGTCCTCCTGTGACCGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp AGGCGCTGGGCCTGGGCACTACTCAACACTGGGTCTTGTAGATCATaGCTATCCTCACACAGTGACTTAAGGCAACGTTCTCCTACCCAT +
Preference number: 6 (lower is better)
Translates to: RRWAWALLNTGSCRS*LSSHSDLRQRSPTH
Trigger: ATGGGTAGGAGAACGTTGCCTTAAGTCACTGTGTGAGGATAGCAATGATCTACAAGACCCAGTGTTGAGTAGTGCCCAGGCCCAGCGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp CTGCTGAAGTTGGAACTGATCTTGGCAGGATTGAAGTTGACGTTCTaGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATTG +
Preference number: 6 (lower is better)
Translates to: LLKLELILAGLKLTF*ALPCSSPETAGWLL
Trigger: CAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAGTTCCAACTTCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp ATGCTGCCTTGCGAGATACTGGACATGTCTGCAGCCAACGTTCCGTaGATAAGCACGCTCAGCATGTCCAACACAGTAGTGAAGAGCTCA +
Preference number: 6 (lower is better)
Translates to: MLPCEILDMSAANVP*ISTLSMSNTVVKSS
Trigger: TGAGCTCTTCACTACTGTGTTGGACATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp ATAAGCAAGGATACAGCGCTCTGCAGAGGAGCCATCTaGACGGTTCATTCCATGTTTCACCACGCCACAGAG +
Preference number: 6 (lower is better)
Translates to: ISKDTALCRGAI*TVHSMFHHATE
Trigger: CTCTGTGGCGTGGTGAAACATGGAATGAACCGTTCAGATGGCTCCTCTGCAGAGCGCTGTATCCTTGCTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp CCAAGAGAGAGTTCATCTCAGTGTTGGGGGTCTGCTTaGTCATCAACTGTAGCTCCAAAGAGGACTGGCGCA +
Preference number: 6 (lower is better)
Translates to: PRESSSQCWGSA*SSTVAPKRTGA
Trigger: TGCGCCAGTCCTCTTTGGAGCTACAGTTGATGATCAAGCAGACCCCCAACACTGAGATGAACTCTCTCTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GACTCCTCCTGTGGGATTGGAAAGTGTGTGGCATACTaGACATGTCGTGGCTGGTCATACAGAATCCCAAGT +
Preference number: 6 (lower is better)
Translates to: DSSCGIGKCVAY*TCRGWSYRIPS
Trigger: ACTTGGGATTCTGTATGACCAGCCACGACATGTGCAGTATGCCACACACTTTCCAATCCCACAGGAGGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp CTCAGCACTCAAGGACTTGCAATAGCCGGTCAGCTCTaGACAAAGGATGGCGATGTCATTTACCCTATCAGG +
Preference number: 6 (lower is better)
Translates to: LSTQGLAIAGQL*TKDGDVIYPIR
Trigger: CCTGATAGGGTAAATGACATCGCCATCCTTTGTGCAGAGCTGACCGGCTATTGCAAGTCCTTGAGTGCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp CCAGGTTCATATATGCACGCTTGTTTTCCTCCATGCTaGCTTGCGAGATACTGGACATGTCTGCAGCCAACG +
Preference number: 6 (lower is better)
Translates to: PGSYMHACFPPC*LARYWTCLQPT
Trigger: CGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACAAGCGTGCATATATGAACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp AGGATGGCGATGTCATTTACCCTATCAGGATCATGGTaGCCCACGCAGACGTGCATAAGAGCATTGCACACA +
Preference number: 6 (lower is better)
Translates to: RMAMSFTLSGSW*PTQTCIRALHT
Trigger: TGTGTGCAATGCTCTTATGCACGTCTGCGTGGGCCACCATGATCCTGATAGGGTAAATGACATCGCCATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp AGGACTTGCAATAGCCGGTCAGCTCTGCACAAAGGATaGCGATGTCATTTACCCTATCAGGATCATGGTGGC +
Preference number: 6 (lower is better)
Translates to: RTCNSRSALHKG*RCHLPYQDHGG
Trigger: GCCACCATGATCCTGATAGGGTAAATGACATCGCCATCCTTTGTGCAGAGCTGACCGGCTATTGCAAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GTACTTCCAGAAGATGACCCCGTCTCTGCTGACTGTTaGAAAACCTCGATTGTGGCCTTGGCAATGTTCTCC +
Preference number: 6 (lower is better)
Translates to: VLPEDDPVSADC*KTSIVALAMFS
Trigger: GGAGAACATTGCCAAGGCCACAATCGAGGTTTTCCAACAGTCAGCAGAGACGGGGTCATCTTCTGGAAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp AATCTTGTTGCCCTTGGTGTCAATAAGGGAGCCCTGTaGCTCACAGGTTATGACATCTCGGTTCTGCTTGGG +
Preference number: 6 (lower is better)
Translates to: NLVALGVNKGAL*LTGYDISVLLG
Trigger: CCCAAGCAGAACCGAGATGTCATAACCTGTGAGCCACAGGGCTCCCTTATTGACACCAAGGGCAACAAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CTGCTGAAGTTGGAACTGATCTTGGCAGGATTGAAGTaGACGTTCTTGGCACTGCCATGTTCGTCCCCAGAG +
Preference number: 6 (lower is better)
Translates to: LLKLELILAGLK*TFLALPCSSPE
Trigger: CTCTGGGGACGAACATGGCAGTGCCAAGAACGTCAACTTCAATCCTGCCAAGATCAGTTCCAACTTCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TCCAAGAGAGAGTTCATCTCAGTGTTGGGGGTCTGCTaGATCATCAACTGTAGCTCCAAAGAGGACTGGCGC +
Preference number: 6 (lower is better)
Translates to: SKREFISVLGVC*IINCSSKEDWR
Trigger: GCGCCAGTCCTCTTTGGAGCTACAGTTGATGATCAAGCAGACCCCCAACACTGAGATGAACTCTCTCTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TGCGAGATACTGGACATGTCTGCAGCCAACGTTCCGTaGATAAGCACGCTCAGCATGTCCAACACAGTAGTG +
Preference number: 6 (lower is better)
Translates to: CEILDMSAANVP*ISTLSMSNTVV
Trigger: CACTACTGTGTTGGACATGCTGAGCGTGCTTATCAACGGAACGTTGGCTGCAGACATGTCCAGTATCTCGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp CTGACGTCTACGTTGCACAGGAGATCATTGAAACCACAAGTGCCATaGTTCGAGGAGCAGCACAAGGCCTTAAGTACTCCTAGCCACTCA +
Preference number: 6 (lower is better)
Translates to: LTSTLHRRSLKPQVP*FEEQHKALSTPSHS
Trigger: TGAGTGGCTAGGAGTACTTAAGGCCTTGTGCTGCTCCTCGAACAATGGCACTTGTGGTTTCAATGATCTCCTGTGCAACGTAGACGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GACCGGATTCCAACAGTAGGTTTGTTTCCATCAGACTGGCAAGGATaGAGTTGTGGCGTCTTGAACAGGTGGAGGAGGATTCGGCAAGTA +
Preference number: 6 (lower is better)
Translates to: DRIPTVGLFPSDWQG*SCGVLNRWRRIRQV
Trigger: TACTTGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGGAATCCGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp CCCTCCTTCTTGAAGATGGAATCGAAGCCAGCAATCTTGTTGCCCTaGGTGTCAATAAGGGAGCCCTGTGGCTCACAGGTTATGACATCT +
Preference number: 6 (lower is better)
Translates to: PSFLKMESKPAILLP*VSIREPCGSQVMTS
Trigger: AGATGTCATAACCTGTGAGCCACAGGGCTCCCTTATTGACACCAAGGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAAGAAGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp TGTAGACCCTCCTTCTTGAAGATGGAATCGAAGCCAGCAATCTTGTaGCCCTTGGTGTCAATAAGGGAGCCCTGTGGCTCACAGGTTATG +
Preference number: 6 (lower is better)
Translates to: CRPSFLKMESKPAIL*PLVSIREPCGSQVM
Trigger: CATAACCTGTGAGCCACAGGGCTCCCTTATTGACACCAAGGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp GCTGCACAGCGAATCAGGTCTTCTAGGAGCAAACATTaGCGGGCGATGAGGATAGCAACAAAAGTAGCCAAG +
Preference number: 6 (lower is better)
Translates to: AAQRIRSSRSKH*RAMRIATKVAK
Trigger: CTTGGCTACTTTTGTTGCTATCCTCATCGCCCGTCAATGTTTGCTCCTAGAAGACCTGATTCGCTGTGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp AGTGAATATTCCATGAGGTCGAAGATGAACTGCACATaGTGCACCAGAGGCAAGTGGTACGACATGCCAAGG +
Preference number: 6 (lower is better)
Translates to: SEYSMRSKMNCT*CTRGKWYDMPR
Trigger: CCTTGGCATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTCACT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp TCACCAGGTTCATATATGCACGCTTGTTTTCCTCCATaGTGCCTTGCGAGATACTGGACATGTCTGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SPGSYMHACFPP*CLARYWTCLQP
Trigger: TGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACAAGCGTGCATATATGAACCTGGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CGCTCGAAACTATGGCTATCCAGCACTTCTAAAGTATaGAGCACCCGTCCAATGGTGAAACCTGCAGTAGCT +
Preference number: 6 (lower is better)
Translates to: RSKLWLSSTSKV*STRPMVKPAVA
Trigger: AGCTACTGCAGGTTTCACCATTGGACGGGTGCTCCATACTTTAGAAGTGCTGGATAGCCATAGTTTCGAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp CATGAACTCCGGTGCCCAGCGCATATTGGATTCCGATaGCTCCACGTTACAGTAGATGGTGTTCTTCACTTT +
Preference number: 6 (lower is better)
Translates to: HELRCPAHIGFR*LHVTVDGVLHF
Trigger: AAAGTGAAGAACACCATCTACTGTAACGTGGAGCCATCGGAATCCAATATGCGCTGGGCACCGGAGTTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GACCGGATTCCAACAGTAGGTTTGTTTCCATCAGACTaGCAAGGATTGAGTTGTGGCGTCTTGAACAGGTGG +
Preference number: 6 (lower is better)
Translates to: DRIPTVGLFPSD*QGLSCGVLNRW
Trigger: CCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGGAATCCGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp AGTAGGTTTGTTTCCATCAGACTGGCAAGGATTGAGTaGTGGCGTCTTGAACAGGTGGAGGAGGATTCGGCA +
Preference number: 6 (lower is better)
Translates to: SRFVSIRLARIE*WRLEQVEEDSA
Trigger: TGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TTGAAGATGGAATCGAAGCCAGCAATCTTGTTGCCCTaGGTGTCAATAAGGGAGCCCTGTGGCTCACAGGTT +
Preference number: 6 (lower is better)
Translates to: LKMESKPAILLP*VSIREPCGSQV
Trigger: AACCTGTGAGCCACAGGGCTCCCTTATTGACACCAAGGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TCCTTCTTGAAGATGGAATCGAAGCCAGCAATCTTGTaGCCCTTGGTGTCAATAAGGGAGCCCTGTGGCTCA +
Preference number: 6 (lower is better)
Translates to: SFLKMESKPAIL*PLVSIREPCGS
Trigger: TGAGCCACAGGGCTCCCTTATTGACACCAAGGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAAGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GATTCCAACAGTAGGTTTGTTTCCATCAGACTGGCAAGGATTGAGTaGTGGCGTCTTGAACAGGTGGAGGAGGATTCGGCAAGTAAGCCT +
Preference number: 6 (lower is better)
Translates to: DSNSRFVSIRLARIE*WRLEQVEEDSASKP
Trigger: AGGCTTACTTGCCGAATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGGAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp TTCCAGAAGATGACCCCGTCTCTGCTGACTGTTGGAAAACCTCGATaGTGGCCTTGGCAATGTTCTCCAAGAGAGAGTTCATCTCAGTGT +
Preference number: 6 (lower is better)
Translates to: FQKMTPSLLTVGKPR*WPWQCSPRESSSQC
Trigger: ACACTGAGATGAACTCTCTCTTGGAGAACATTGCCAAGGCCACAATCGAGGTTTTCCAACAGTCAGCAGAGACGGGGTCATCTTCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp CTTCACCAGGTTCATATATGCACGCTTGTTTTCCTCCATGCTGCCTaGCGAGATACTGGACATGTCTGCAGCCAACGTTCCGTTGATAAG +
Preference number: 6 (lower is better)
Translates to: LHQVHICTLVFLHAA*RDTGHVCSQRSVDK
Trigger: CTTATCAACGGAACGTTGGCTGCAGACATGTCCAGTATCTCGCAAGGCAGCATGGAGGAAAACAAGCGTGCATATATGAACCTGGTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp AAGACCAGCGAACCTCAACTGCTTGTCCACGCTCCTTaGTCTGTTGTTCGATCTCTCGTAATTTTGCACGGA +
Preference number: 6 (lower is better)
Translates to: KTSEPQLLVHAP*SVVRSLVILHG
Trigger: TCCGTGCAAAATTACGAGAGATCGAACAACAGATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp CTGGATGGCAAAGTCGATGAGGCCACTGATGCTCAGTaGATATTCCATGAGGTCGAAGATGAACTGCACATG +
Preference number: 6 (lower is better)
Translates to: LDGKVDEATDAQ*IFHEVEDELHM
Trigger: CATGTGCAGTTCATCTTCGACCTCATGGAATATTCACTGAGCATCAGTGGCCTCATCGACTTTGCCATCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp ATGCTCAGTGAATATTCCATGAGGTCGAAGATGAACTaGACATGCTGCACCAGAGGCAAGTGGTACGACATG +
Preference number: 6 (lower is better)
Translates to: MLSEYSMRSKMN*TCCTRGKWYDM
Trigger: CATGTCGTACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCGACCTCATGGAATATTCACTGAGCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp CCAGTGATAAGAAAGGCTGTTGGCTCAACAGGGACATaGTCTTCTGTTTCTGTCGATCTCGTTCTTTACGGG +
Preference number: 6 (lower is better)
Translates to: PVIRKAVGSTGT*SSVSVDLVLYG
Trigger: CCCGTAAAGAACGAGATCGACAGAAACAGAAGAGCATGTCCCTGTTGAGCCAACAGCCTTTCTTATCACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TTGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGCTaGTTATTGAAACCTTGTTTTACATTCAAAGCCGTC +
Preference number: 6 (lower is better)
Translates to: LALPCSSPETAG*LLKPCFTFKAV
Trigger: GACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp ATGAGCCAGGCAGCCCGCATCACAGGCACCGTGTATTaGGCCAAATACCCAAATACTTCTTCCTTTTTACTG +
Preference number: 6 (lower is better)
Translates to: MSQAARITGTVY*AKYPNTSSFLL
Trigger: CAGTAAAAAGGAAGAAGTATTTGGGTATTTGGCCAAATACACGGTGCCTGTGATGCGGGCTGCCTGGCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp AAAGACCAGCGAACCTCAACTGCTTGTCCACGCTCCTaGATCTGTTGTTCGATCTCTCGTAATTTTGCACGG +
Preference number: 6 (lower is better)
Translates to: KDQRTSTACPRS*ICCSISRNFAR
Trigger: CCGTGCAAAATTACGAGAGATCGAACAACAGATCAAGGAGCGTGGACAAGCAGTTGAGGTTCGCTGGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp ACGTTGCACAGGAGATCATTGAAACCACAAGTGCCATaGTTCGAGGAGCAGCACAAGGCCTTAAGTACTCCT +
Preference number: 6 (lower is better)
Translates to: TLHRRSLKPQVP*FEEQHKALSTP
Trigger: AGGAGTACTTAAGGCCTTGTGCTGCTCCTCGAACAATGGCACTTGTGGTTTCAATGATCTCCTGTGCAACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CCAACAGTAGGTTTGTTTCCATCAGACTGGCAAGGATaGAGTTGTGGCGTCTTGAACAGGTGGAGGAGGATT +
Preference number: 6 (lower is better)
Translates to: PTVGLFPSDWQG*SCGVLNRWRRI
Trigger: AATCCTCCTCCACCTGTTCAAGACGCCACAACTCAATCCTTGCCAGTCTGATGGAAACAAACCTACTGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp GCCTGGGCACTACTCAACACTGGGTCTTGTAGATCATaGCTATCCTCACACAGTGACTTAAGGCAACGTTCT +
Preference number: 6 (lower is better)
Translates to: AWALLNTGSCRS*LSSHSDLRQRS
Trigger: AGAACGTTGCCTTAAGTCACTGTGTGAGGATAGCAATGATCTACAAGACCCAGTGTTGAGTAGTGCCCAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp ACTGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATTGAAACCTaGTTTTACATTCAAAGCCGTCAGTTCATCCTCCTTCTGTTTGGG +
Preference number: 6 (lower is better)
Translates to: TAMFVPRDSRLVIET*FYIQSRQFILLLFG
Trigger: CCCAAACAGAAGGAGGATGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp TTCTTGGCACTGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATaGAAACCTTGTTTTACATTCAAAGCCGTCAGTTCATCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FLALPCSSPETAGWL*KPCFTFKAVSSSSF
Trigger: GAAGGAGGATGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAGTGCCAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp GTCATCTTAATGAGCCAGGCAGCCCGCATCACAGGCACCGTGTATTaGGCCAAATACCCAAATACTTCTTCCTTTTTACTGAAAATGGGG +
Preference number: 6 (lower is better)
Translates to: VILMSQAARITGTVY*AKYPNTSSFLLKMG
Trigger: CCCCATTTTCAGTAAAAAGGAAGAAGTATTTGGGTATTTGGCCAAATACACGGTGCCTGTGATGCGGGCTGCCTGGCTCATTAAGATGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS GCA 72 bp GTCAGTGAACCAGGTGTTAATAGCACTCTGAGATCTTaGAGTCACCAGCCAGAAGTTGTCCTTCTGGTTCAT +
Preference number: 6 (lower is better)
Translates to: VSEPGVNSTLRS*SHQPEVVLLVH
Trigger: ATGAACCAGAAGGACAACTTCTGGCTGGTGACTGCAAGATCTCAGAGTGCTATTAACACCTGGTTCACTGAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CTGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATaGAAACCTTGTTTTACATTCAAAGCCGTCAGTTCA +
Preference number: 6 (lower is better)
Translates to: LPCSSPETAGWL*KPCFTFKAVSS
Trigger: TGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp CAGGGAGAGATCTTTTGTTTGGTAGAAACTTGTAGACCCTCCTTCTaGAAGATGGAATCGAAGCCAGCAATCTTGTTGCCCTTGGTGTCA +
Preference number: 6 (lower is better)
Translates to: QGEIFCLVETCRPSF*KMESKPAILLPLVS
Trigger: TGACACCAAGGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACAAGTTTCTACCAAACAAAAGATCTCTCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS TCA 72 bp TGCCATGTTCGTCCCCAGAGACAGCAGGCTGGTTATTaGAACCTTGTTTTACATTCAAAGCCGTCAGTTCAT +
Preference number: 6 (lower is better)
Translates to: CHVRPQRQQAGY*NLVLHSKPSVH
Trigger: ATGAACTGACGGCTTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGGGACGAACATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TCAAGAGAGTTACTAAAGTCAGAGCGCTCGAAACTATaGCTATCCAGCACTTCTAAAGTATGGAGCACCCGT +
Preference number: 6 (lower is better)
Translates to: SRELLKSERSKL*LSSTSKVWSTR
Trigger: ACGGGTGCTCCATACTTTAGAAGTGCTGGATAGCCATAGTTTCGAGCGCTCTGACTTTAGTAACTCTCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp AACTGTAGCTCCAAAGAGGACTGGCGCATGGTCCATTaGTCTAAATTCTTGAGAATACGTTTAATGCGCTGC +
Preference number: 6 (lower is better)
Translates to: NCSSKEDWRMVH*SKFLRIRLMRC
Trigger: GCAGCGCATTAAACGTATTCTCAAGAATTTAGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCTACAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp AGGCCCTCAAAAAGCTCCCAGGGAGAGATCTTTTGTTaGGTAGAAACTTGTAGACCCTCCTTCTTGAAGATG +
Preference number: 6 (lower is better)
Translates to: RPSKSSQGEIFC*VETCRPSFLKM
Trigger: CATCTTCAAGAAGGAGGGTCTACAAGTTTCTACCAAACAAAAGATCTCTCCCTGGGAGCTTTTTGAGGGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp GTCTGCTTGATCATCAACTGTAGCTCCAAAGAGGACTaGCGCATGGTCCATTGGTCTAAATTCTTGAGAATA +
Preference number: 6 (lower is better)
Translates to: VCLIINCSSKED*RMVHWSKFLRI
Trigger: TATTCTCAAGAATTTAGACCAATGGACCATGCGCCAGTCCTCTTTGGAGCTACAGTTGATGATCAAGCAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp TTACACCTTAACTTCTCTGCGATGATGCTGCTGAAGTaGGAACTGATCTTGGCAGGATTGAAGTTGACGTTC +
Preference number: 6 (lower is better)
Translates to: LHLNFSAMMLLK*ELILAGLKLTF
Trigger: GAACGTCAACTTCAATCCTGCCAAGATCAGTTCCAACTTCAGCAGCATCATCGCAGAGAAGTTAAGGTGTAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 90 bp AGGTTGAGCCGCAGTTTGAGTGCCTCATGCATTAGCTGCTTTGGTTaGCAATCATCTAAGTACTGGTTTTCTCGCCAATTAATCACAATC +
Preference number: 6 (lower is better)
Translates to: RLSRSLSASCISCFG*QSSKYWFSRQLITI
Trigger: GATTGTGATTAATTGGCGAGAAAACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAATGCATGAGGCACTCAAACTGCGGCTCAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp CGCAGTTTGAGTGCCTCATGCATTAGCTGCTTTGGTTaGCAATCATCTAAGTACTGGTTTTCTCGCCAATTA +
Preference number: 6 (lower is better)
Translates to: RSLSASCISCFG*QSSKYWFSRQL
Trigger: TAATTGGCGAGAAAACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAATGCATGAGGCACTCAAACTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CAA 72 bp ATCTTTTGTTTGGTAGAAACTTGTAGACCCTCCTTCTaGAAGATGGAATCGAAGCCAGCAATCTTGTTGCCC +
Preference number: 6 (lower is better)
Translates to: IFCLVETCRPSF*KMESKPAILLP
Trigger: GGGCAACAAGATTGCTGGCTTCGATTCCATCTTCAAGAAGGAGGGTCTACAAGTTTCTACCAAACAAAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8
CDS CCA 72 bp TGCATTAGCTGCTTTGGTTTGCAATCATCTAAGTACTaGTTTTCTCGCCAATTAATCACAATCTGGTGCACC +
Preference number: 6 (lower is better)
Translates to: CISCFGLQSSKY*FSRQLITIWCT
Trigger: GGTGCACCAGATTGTGATTAATTGGCGAGAAAACCAGTACTTAGATGATTGCAAACCAAAGCAGCTAATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087948.11
ENSMUST00000087956.6
ENSMUST00000117203.8
ENSMUST00000117706.8