Pregenerated sensors for MED11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018923Ensembl transcript IDs: ENSMUST00000019067.8, ENSMUST00000151013.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGTCTTCTGAAACTCCAGGGCAGGGTGCACATGAGGAAGTGGGTTaGGAGTTGACCTCTGACCTCTGTCTGATCTTGCATAGTGGAAAA | + |
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Preference number: 1 (lower is better) Translates to: KSSETPGQGAHEEVG*ELTSDLCLILHSGK Trigger: TTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATGTGCACCCTGCCCTGGAGTTTCAGAAGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR TCA 90 bp | AGCAATCTTCCCACCTCTACTTCCCAAGTACCGGGCCTACAGGTGTaGGCCACTGTGTGTGCTTATAAGAACACATTTATTTTTATTGGG | + |
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Preference number: 1 (lower is better) Translates to: SNLPTSTSQVPGLQV*ATVCAYKNTFIFIG Trigger: CCCAATAAAAATAAATGTGTTCTTATAAGCACACACAGTGGCTCACACCTGTAGGCCCGGTACTTGGGAAGTAGAGGTGGGAAGATTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 90 bp | TCTGAAACTCCAGGGCAGGGTGCACATGAGGAAGTGGGTTGGGAGTaGACCTCTGACCTCTGTCTGATCTTGCATAGTGGAAAACAGGGC | + |
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Preference number: 2 (lower is better) Translates to: SETPGQGAHEEVGWE*TSDLCLILHSGKQG Trigger: GCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATGTGCACCCTGCCCTGGAGTTTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR TCA 90 bp | GGTCCCTCTATGTACTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACTTGGGCCAAGTCTTCTaGAACTCCAGGGCAGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: GPSMYLAQVGLKLQQSSHLGQVF*NSRAGC Trigger: GCACCCTGCCCTGGAGTTTCAGAAGACTTGGCCCAA...GTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAGGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 90 bp | CCGTCTTGCTGGAAGAGTCAGAAGAGATGTGTGTACACTGGGGCTTaGGATTCTTCAGTTCTCCTTTCTGCCTTGTGGTCCTCGTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: PSCWKSQKRCVYTGA*DSSVLLSALWSSSA Trigger: GGCAGACGAGGACCACAAGGCAGAAAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTTCCAGCAAGACGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCCAAGTCTTCTGAAACTCCAGGGCAGGGTGCACATGAGGAAGTGGGTTGGGTGTACACTGGGGCTTTaGATTCTTCAGTTCTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: GPSLLKLQGRVHMRKWVGCTLGL*ILQFSF Trigger: AAAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACA...CCCAACCCACTTCCTCATGTGCACCCTGCCCTGGAGTTTCAGAAGACTTGGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 90 bp | CATGAGGAAGTGGGTTGGGAGTTGACCTCTGACCTCTGTCTGATCTaGCATAGTGGAAAACAGGGCCGTCTTGCTGGAAGAGTCAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: HEEVGWELTSDLCLI*HSGKQGRLAGRVRR Trigger: TCTTCTGACTCTTCCAGCAAGACGGCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR GCA 90 bp | CTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACCTCTACTTCCCAAGTTCAGTTCTCCTTTCTaGCTTGTGGTCCTCGTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LSPGWSQTTAIFPPLLPKFSSPF*LVVLVC Trigger: GCAGACGAGGACCACAAGGCAGAAAGGAGAACTGAA...CTTGGGAAGTAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGTCTCAAACTACAGCAATCTTCCCACCTCTACTTCCCAAGTACCGGGCCTAACAGGGCCGTCTTGCTaGAAGAGTCAGAAGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: LVSNYSNLPTSTSQVPGLTGPSC*KSQKRC Trigger: ACATCTCTTCTGACTCTTCCAGCAAGACGGCCCTGT...TAGGCCCGGTACTTGGGAAGTAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTATGTACTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACCTCTACATGAGGAAGTGGGTTaGGAGTTGACCTCTGACCTC | + |
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Preference number: 2 (lower is better) Translates to: LYVLSPGWSQTTAIFPPLHEEVG*ELTSDL Trigger: GAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATG...TAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR TCA 72 bp | TGGTCCTCGTCTGCCCTGACCAGTAGGGCACGTGTATaGTGCACTGCTCCCCATCCTACGGTCTCTGGTGCA | + |
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Preference number: 3 (lower is better) Translates to: WSSSALTSRARV*CTAPHPTVSGA Trigger: TGCACCAGAGACCGTAGGATGGGGAGCAGTGCATCATACACGTGCCCTACTGGTCAGGGCAGACGAGGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR TCA 72 bp | CAGTTCTCCTTTCTGCCTTGTGGTCCTCGTCTGCCCTaGCCAGTAGGGCACGTGTATGATGCACTGCTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: QFSFLPCGPRLP*PVGHVYDALLP Trigger: GGGGAGCAGTGCATCATACACGTGCCCTACTGGTCAGGGCAGACGAGGACCACAAGGCAGAAAGGAGAACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CCA 72 bp | GAAACTCCAGGGCAGGGTGCACATGAGGAAGTGGGTTaGGAGTTGACCTCTGACCTCTGTCTGATCTTGCAT | + |
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Preference number: 3 (lower is better) Translates to: ETPGQGAHEEVG*ELTSDLCLILH Trigger: ATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATGTGCACCCTGCCCTGGAGTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAACTACAGCAATCTTCCCACCTCTACTTCCCAAGTACCGGGCCTACAGGTGGAAGTGGGTTGGGAGTaGACCTCTGACCTCTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: SNYSNLPTSTSQVPGLQVEVGWE*TSDLCL Trigger: CAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTC...CACCTGTAGGCCCGGTACTTGGGAAGTAGAGGTGGGAAGATTGCTGTAGTTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CAA 90 bp | TTGACCTCTGACCTCTGTCTGATCTTGCATAGTGGAAAACAGGGCCGTCTTGCTGTGTACACTGGGGCTTaGGATTCTTCAGTTCTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LTSDLCLILHSGKQGRLAVYTGA*DSSVLL Trigger: AAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACAC...AGCAAGACGGCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTATGTACTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACCTCTAGAAAACAGGGCCGTCTaGCTGGAAGAGTCAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: LYVLSPGWSQTTAIFPPLENRAV*LEESEE Trigger: CTCTTCTGACTCTTCCAGCAAGACGGCCCTGTTTTC...TAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR TCA 72 bp | CCCACCTCTACTTCCCAAGTACCGGGCCTACAGGTGTaGGCCACTGTGTGTGCTTATAAGAACACATTTATT | + |
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Preference number: 3 (lower is better) Translates to: PTSTSQVPGLQV*ATVCAYKNTFI Trigger: AATAAATGTGTTCTTATAAGCACACACAGTGGCTCACACCTGTAGGCCCGGTACTTGGGAAGTAGAGGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTATGTACTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACCTCTAGACCTCTGTCTGATCTaGCATAGTGGAAAACAGGGC | + |
|
Preference number: 3 (lower is better) Translates to: LYVLSPGWSQTTAIFPPLDLCLI*HSGKQG Trigger: GCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTC...TAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CCA 72 bp | GTCTTGCTGGAAGAGTCAGAAGAGATGTGTGTACACTaGGGCTTTGGATTCTTCAGTTCTCCTTTCTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: VLLEESEEMCVH*GFGFFSSPFCL Trigger: AAGGCAGAAAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTTCCAGCAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CCA 72 bp | TTTGAAGGAGGGTCCCTCTATGTACTTAGCCCAGGTTaGTCTCAAACTACAGCAATCTTCCCACCTCTACTT | + |
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Preference number: 3 (lower is better) Translates to: FEGGSLYVLSPG*SQTTAIFPPLL Trigger: AAGTAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAGGGACCCTCCTTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGCTTTGGATTCTTCAGTTCTCCTTTCTGCCTTGTGGTCCTCGTCTGCCCGCCGTTCCTGCGTTCTaGAGGATGGCGCCGATTTCA | + |
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Preference number: 4 (lower is better) Translates to: LGLWILQFSFLPCGPRLPAVPAF*RMAPIS Trigger: TGAAATCGGCGCCATCCTCCAGAACGCAGGAACGGC...GGGCAGACGAGGACCACAAGGCAGAAAGGAGAACTGAAGAATCCAAAGCCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR GCA 90 bp | AACACATTTATTTTTATTGGGCCAAGTCTTCTGAAACTCCAGGGCAGGGTGCACGTGAAGGCTGCCGCCTaGCGGTCGAGGAGCCGCTCG | + |
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Preference number: 4 (lower is better) Translates to: NTFIFIGPSLLKLQGRVHVKAAA*RSRSRS Trigger: CGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTTCAC...GTGCACCCTGCCCTGGAGTTTCAGAAGACTTGGCCCAATAAAAATAAATGTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 72 bp | ACTGGGGCTTTGGATTCTTCAGTTCTCCTTTCTGCCTaGTGGTCCTCGTCTGCCCTGACCAGTAGGGCACGT | + |
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Preference number: 4 (lower is better) Translates to: TGALDSSVLLSA*WSSSALTSRAR Trigger: ACGTGCCCTACTGGTCAGGGCAGACGAGGACCACAAGGCAGAAAGGAGAACTGAAGAATCCAAAGCCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 72 bp | CCAGGGCAGGGTGCACATGAGGAAGTGGGTTGGGAGTaGACCTCTGACCTCTGTCTGATCTTGCATAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PGQGAHEEVGWE*TSDLCLILHSG Trigger: TCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATGTGCACCCTGCCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR TCA 90 bp | GAAGAGTCAGAAGAGATGTGTGTACACTGGGGCTTTGGATTCTTCAGTTCTCCTGCTGCACAGAAGTGGTaGAGGCTGCCGCCTGCCGGT | + |
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Preference number: 4 (lower is better) Translates to: EESEEMCVHWGFGFFSSPAAQKW*RLPPAG Trigger: ACCGGCAGGCGGCAGCCTTCACCACTTCTGTGCAGC...AGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR CCA 90 bp | GGTCCCTCTATGTACTTAGCCCAGGTTGGTCTCAAACTACAGCAATCTTCCCACTCCTGGAAGAGTAGCTaGAGCCCTCATGCGGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GPSMYLAQVGLKLQQSSHSWKSS*SPHAAA Trigger: GGCAGCCGCATGAGGGCTCCAGCTACTCTTCCAGGA...GTGGGAAGATTGCTGTAGTTTGAGACCAACCTGGGCTAAGTACATAGAGGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR TCA 90 bp | CAGGGTGCACATGAGGAAGTGGGTTGGGAGTTGACCTCTGACCTCTGTCTGATCCGCTTTAGAGCCATTTaGCAGTCCTTCCTGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: QGAHEEVGWELTSDLCLIRFRAI*QSFLEE Trigger: CTCTTCCAGGAAGGACTGTCAAATGGCTCTAAAGCG...GATCAGACAGAGGTCAGAGGTCAACTCCCAACCCACTTCCTCATGTGCACCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR GCA 90 bp | GAAGAGTCAGAAGAGATGTGTGTACACTGGGGCTTTGGATTCTTCAGTTCTCCTAGAAGTGGTGAAGGCTaGCGCCTGCCGGTCGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: EESEEMCVHWGFGFFSSPRSGEG*RLPVEE Trigger: CTCCTCGACCGGCAGGCGGCAGCCTTCACCACTTCT...AGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR CCA 90 bp | CCAAGTCTTCTGAAACTCCAGGGCAGGGTGCACATGAGGAAGTGGGTTGGGAGTTTTGACAGTCCTTCCTaGAAGAGTAGCTGGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PSLLKLQGRVHMRKWVGSFDSPS*KSSWSP Trigger: AGGGCTCCAGCTACTCTTCCAGGAAGGACTGTCAAA...ACTCCCAACCCACTTCCTCATGTGCACCCTGCCCTGGAGTTTCAGAAGACTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 72 bp | GTGGGTTGGGAGTTGACCTCTGACCTCTGTCTGATCTaGCATAGTGGAAAACAGGGCCGTCTTGCTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VGWELTSDLCLI*HSGKQGRLAGR Trigger: TCTTCCAGCAAGACGGCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAACTCCCAACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR GCA 90 bp | TTGACCTCTGACCTCTGTCTGATCTTGCATAGTGGAAAACAGGGCCGTCTTGCTTCTGCCTCCACGTGCTaGACAGAAGTGGTGAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LTSDLCLILHSGKQGRLASASTC*TEVVKA Trigger: AGCCTTCACCACTTCTGTGCAGCACGTGGAGGCAGA...AGCAAGACGGCCCTGTTTTCCACTATGCAAGATCAGACAGAGGTCAGAGGTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR GCA 90 bp | TTGGTCTCAAACTACAGCAATCTTCCCACCTCTACTTCCCAAGTACCGGGCCTACAGTTCTCCAGCATCTaGTCACAGGTTCTCGCCACA | + |
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Preference number: 4 (lower is better) Translates to: LVSNYSNLPTSTSQVPGLQFSSI*SQVLAT Trigger: TGTGGCGAGAACCTGTGAGCAGATGCTGGAGAACTG...TAGGCCCGGTACTTGGGAAGTAGAGGTGGGAAGATTGCTGTAGTTTGAGACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS-3UTR CCA 90 bp | AAGAGTCAGAAGAGATGTGTGTACACTGGGGCTTTGGATTCTTCAGTTCTCCTTCTGCGTTCTGGAGGATaGCGCCGATTTCACGCTCGA | + |
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Preference number: 4 (lower is better) Translates to: KSQKRCVYTGALDSSVLLLRSGG*RRFHAR Trigger: TCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAG...AAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| 3UTR CAA 72 bp | TGGAAGAGTCAGAAGAGATGTGTGTACACTGGGGCTTaGGATTCTTCAGTTCTCCTTTCTGCCTTGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: WKSQKRCVYTGA*DSSVLLSALWS Trigger: GGACCACAAGGCAGAAAGGAGAACTGAAGAATCCAAAGCCCCAGTGTACACACATCTCTTCTGACTCTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS CCA 90 bp | CCCTTGCCGTCTGCCCCTCGCTTCCCGAACCTGCGTTCTGGAGGATaGCGCCGATTTCACGCTCGATATCCTCCAGGGCGCGCAGCCGCT | + |
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Preference number: 5 (lower is better) Translates to: PLPSAPRFPNLRSGG*RRFHARYPPGRAAA Trigger: AGCGGCTGCGCGCCCTGGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS CCA 90 bp | GCCGTTCCCCTTGCCGTCTGCCCCTCGCTTCCCGAACCTGCGTTCTaGAGGATGGCGCCGATTTCACGCTCGATATCCTCCAGGGCGCGC | + |
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Preference number: 5 (lower is better) Translates to: AVPLAVCPSLPEPAF*RMAPISRSISSRAR Trigger: GCGCGCCCTGGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGGGAACGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS GCA 90 bp | CAGGATCGCCGTTCCCCTTGCCGTCTGCCCCTCGCTTCCCGAACCTaGGTTCTGGAGGATGGCGCCGATTTCACGCTCGATATCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: QDRRSPCRLPLASRT*VLEDGADFTLDILQ Trigger: CTGGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGGGAACGGCGATCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS GCA 90 bp | AGCTCTGCCTCCACGTGCTGCACAGAAGTGGTGAAGGCTGCCGCCTaGCGGTCGAGGAGCCGCTCGTTAGTCTTTTCCTTGGACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: SSASTCCTEVVKAAA*RSRSRSLVFSLDSS Trigger: GGAACTGTCCAAGGAAAAGACTAACGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTTCACCACTTCTGTGCAGCACGTGGAGGCAGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019067.8 ENSMUST00000151013.8 |
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| CDS GCA 90 bp | GTCTTTTCCTTGGACAGTTCCAGGATCGCCGTTCCCCTTGCCGTCTaGCCCTCGCTTCCCGAACCTGCGTTCTGGAGGATGGCGCCGATT | + |
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Preference number: 5 (lower is better) Translates to: VFSLDSSRIAVPLAV*PSLPEPAFWRMAPI Trigger: AATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGGGAACGGCGATCCTGGAACTGTCCAAGGAAAAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS TCA 72 bp | CGGATAGCTCTGCCTCCACGTGCTGCACAGAAGTGGTaGAGGCTGCCGCCTGCCGGTCGAGGAGCCGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: RIALPPRAAQKW*RLPPAGRGAAR Trigger: ACGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTTCACCACTTCTGTGCAGCACGTGGAGGCAGAGCTATCCG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019067.8 ENSMUST00000151013.8 |
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| CDS GCA 72 bp | CTCTGCCTCCACGTGCTGCACAGAAGTGGTGAAGGCTaGCGCCTGCCGGTCGAGGAGCCGCTCGTTAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: LCLHVLHRSGEG*RLPVEEPLVSL Trigger: AAGACTAACGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTTCACCACTTCTGTGCAGCACGTGGAGGCAGAG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019067.8 ENSMUST00000151013.8 |
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| CDS GCA 72 bp | CGTTCCCCTTGCCGTCTGCCCCTCGCTTCCCGAACCTaGGTTCTGGAGGATGGCGCCGATTTCACGCTCGAT | + |
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Preference number: 6 (lower is better) Translates to: RSPCRLPLASRT*VLEDGADFTLD Trigger: ATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGGGAACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS CCA 72 bp | TCTGCCCCTCGCTTCCCGAACCTGCGTTCTGGAGGATaGCGCCGATTTCACGCTCGATATCCTCCAGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: SAPRFPNLRSGG*RRFHARYPPGR Trigger: GCGCCCTGGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS CAA 90 bp | AAGGCTGCCGCCTGCCGGTCGAGGAGCCGCTCGTTAGTCTTTTCCTaGGACAGTTCCAGGATCGCCGTTCCTGCGTTCTGGAGGATGGCG | + |
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Preference number: 6 (lower is better) Translates to: KAAACRSRSRSLVFS*DSSRIAVPAFWRMA Trigger: CGCCATCCTCCAGAACGCAGGAACGGCGATCCTGGAACTGTCCAAGGAAAAGACTAACGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS TCA 72 bp | TGGAGCCCTCATGCGGCTGCCCTGTGGCCACCTGAGTaGGGTAGCGGATTTGAGCGGATAGCTCTGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: WSPHAAALWPPE*GSGFERIALPP Trigger: TGGAGGCAGAGCTATCCGCTCAAATCCGCTACCTCACTCAGGTGGCCACAGGGCAGCCGCATGAGGGCTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019067.8 ENSMUST00000151013.8 |
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| CDS GCA 72 bp | TTGGACAGTTCCAGGATCGCCGTTCCCCTTGCCGTCTaGCCCTCGCTTCCCGAACCTGCGTTCTGGAGGATG | + |
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Preference number: 6 (lower is better) Translates to: LDSSRIAVPLAV*PSLPEPAFWRM Trigger: CATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAGGGGAACGGCGATCCTGGAACTGTCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS CCA 72 bp | CTTGCCGTCTGCCCCTCGCTTCCCGAACCTGCGTTCTaGAGGATGGCGCCGATTTCACGCTCGATATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LAVCPSLPEPAF*RMAPISRSISS Trigger: GGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGTTCGGGAAGCGAGGGGCAGACGGCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS CAA 72 bp | GCCTGCCGGTCGAGGAGCCGCTCGTTAGTCTTTTCCTaGGACAGTTCCAGGATCGCCGTTCCCCTTGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: ACRSRSRSLVFS*DSSRIAVPLAV Trigger: GACGGCAAGGGGAACGGCGATCCTGGAACTGTCCAAGGAAAAGACTAACGAGCGGCTCCTCGACCGGCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151013.8 |
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| CDS GCA 72 bp | TCCACGTGCTGCACAGAAGTGGTGAAGGCTGCCGCCTaGCGGTCGAGGAGCCGCTCGTTAGTCTTTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: STCCTEVVKAAA*RSRSRSLVFSL Trigger: CAAGGAAAAGACTAACGAGCGGCTCCTCGACCGGCAGGCGGCAGCCTTCACCACTTCTGTGCAGCACGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019067.8 ENSMUST00000151013.8 |
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| CDS CCA 72 bp | ACAGTTCCAGGATCGCCGTTCCTGCGTTCTGGAGGATaGCGCCGATTTCACGCTCGATATCCTCCAGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: TVPGSPFLRSGG*RRFHARYPPGR Trigger: GCGCCCTGGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGAACGGCGATCCTGGAACTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS CAA 72 bp | GCCTGCCGGTCGAGGAGCCGCTCGTTAGTCTTTTCCTaGGACAGTTCCAGGATCGCCGTTCCTGCGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: ACRSRSRSLVFS*DSSRIAVPAFW Trigger: CCAGAACGCAGGAACGGCGATCCTGGAACTGTCCAAGGAAAAGACTAACGAGCGGCTCCTCGACCGGCAGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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| CDS CCA 72 bp | TCCTTGGACAGTTCCAGGATCGCCGTTCCTGCGTTCTaGAGGATGGCGCCGATTTCACGCTCGATATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SLDSSRIAVPAF*RMAPISRSISS Trigger: GGAGGATATCGAGCGTGAAATCGGCGCCATCCTCCAGAACGCAGGAACGGCGATCCTGGAACTGTCCAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019067.8 |
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