Pregenerated sensors for MED10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021598Ensembl transcript IDs: ENSMUST00000022089.10, ENSMUST00000221893.2, ENSMUST00000222387.2, ENSMUST00000223376.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGAAAGAAGGGGTCACCGAGGGTCTAAGAGCTGCAGGGACAGCTaGGGCACAGCTCTGCTCCCCCAGCCCGAGTCCCACAAGATCAAA | + |
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Preference number: 1 (lower is better) Translates to: GERRGHRGSKSCRDS*GTALLPQPESHKIK Trigger: TTTGATCTTGTGGGACTCGGGCTGGGGGAGCAGAGCTGTGCCTCAGCTGTCCCTGCAGCTCTTAGACCCTCGGTGACCCCTTCTTTCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGAAGGGGTCACCGAGGGTCTAAGAGCTGCAGGGACAGCTGAGGCACAGCCCACAAGATCAAAATaGTGGAAACAGGAGGTAGGG | + |
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Preference number: 2 (lower is better) Translates to: EKEGVTEGLRAAGTAEAQPTRSK*WKQEVG Trigger: CCCTACCTCCTGTTTCCATCATTTTGATCTTGTGGG...CTGTGCCTCAGCTGTCCCTGCAGCTCTTAGACCCTCGGTGACCCCTTCTTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR-3UTR CCA 90 bp | GAGAAAGAAGGGGTCACCGAGGGTCTAAGAGCTGCAGGGACAGCTGAGGCACAGCTCACTGGCTCAGTCTaGTTATTACAAGGGTATGGG | + |
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Preference number: 2 (lower is better) Translates to: EKEGVTEGLRAAGTAEAQLTGSV*LLQGYG Trigger: CCCATACCCTTGTAATAACCAGACTGAGCCAGTGAG...CTGTGCCTCAGCTGTCCCTGCAGCTCTTAGACCCTCGGTGACCCCTTCTTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR-3UTR CCA 90 bp | ATTTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGCCAGGCCAGTTCATGTaGCTGGAAGGCAGCAGTGGC | + |
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Preference number: 2 (lower is better) Translates to: ISHFSTVVFLPVPLEKEGPGQFM*LEGSSG Trigger: GCCACTGCTGCCTTCCAGCCACATGAACTGGCCTGG...CCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR CAA 90 bp | AAGTCAGACAGGAAAGCCACAGTGAAACCACGGCTGGCGGGGACATaGCCAGATAAACTCAGCCTCTCCTCACTGTCACACTGTCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: KSDRKATVKPRLAGT*PDKLSLSSLSHCQF Trigger: AAACTGACAGTGTGACAGTGAGGAGAGGCTGAGTTTATCTGGCAATGTCCCCGCCAGCCGTGGTTTCACTGTGGCTTTCCTGTCTGACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| 3UTR TCA 72 bp | CTGTCACCCAAGGGAAGTCAGACAGGAAAGCCACAGTaGAACCACGGCTGGCGGGGACATTGCCAGATAAAC | + |
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Preference number: 3 (lower is better) Translates to: LSPKGSQTGKPQ*NHGWRGHCQIN Trigger: GTTTATCTGGCAATGTCCCCGCCAGCCGTGGTTTCACTGTGGCTTTCCTGTCTGACTTCCCTTGGGTGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| 3UTR TCA 72 bp | GTAAAGAACGCTGAGGAGGAGCCCAGGGCTCAGACGTaGGAGACTAGAACATACACCATCCAGAGCCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: VKNAEEEPRAQT*ETRTYTIQSPP Trigger: TGGAGGGCTCTGGATGGTGTATGTTCTAGTCTCTCACGTCTGAGCCCTGGGCTCCTCCTCAGCGTTCTTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| 3UTR GCA 72 bp | CCCATCACATTTCACATTTCAGCACGGTTGTCTTCCTaGCTGTTCCCCTGGAGAAAGAAGGGGTCACCGAGG | + |
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Preference number: 3 (lower is better) Translates to: PITFHISARLSS*LFPWRKKGSPR Trigger: CCTCGGTGACCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAATGTGATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR CCA 72 bp | GGCTGGAAGGCAGCAGTGGCAGGCACAGCTTCTCACTaGCTCAGTCTGGTTATTACAAGGGTATGGGATCTT | + |
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Preference number: 3 (lower is better) Translates to: GWKAAVAGTASH*LSLVITRVWDL Trigger: AAGATCCCATACCCTTGTAATAACCAGACTGAGCCAGTGAGAAGCTGTGCCTGCCACTGCTGCCTTCCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR TCA 72 bp | CCAGTCAGGGTCTACACAGAATCACAACAGGCACACTaGTGTCAGCTGTCACCCAAGGGAAGTCAGACAGGA | + |
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Preference number: 3 (lower is better) Translates to: PVRVYTESQQAH*CQLSPKGSQTG Trigger: TCCTGTCTGACTTCCCTTGGGTGACAGCTGACATCAGTGTGCCTGTTGTGATTCTGTGTAGACCCTGACTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CCA 90 bp | CCACGGCTGGCGGGGACATTGCCAGATAAACTCAGCCTCTCCTCACTGTCACACGCCTGGCTGCTGGGCTaGAAGTCGCTGACGATGATG | + |
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Preference number: 4 (lower is better) Translates to: PRLAGTLPDKLSLSSLSHAWLLG*KSLTMM Trigger: CATCATCGTCAGCGACTTCCAGCCCAGCAGCCAGGC...GTGTGACAGTGAGGAGAGGCTGAGTTTATCTGGCAATGTCCCCGCCAGCCGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR TCA 90 bp | CCTGTTCCCCTGGAGAAAGAAGGGGTCACCGAGGGTCTAAGAGCTGCAGGGACACTTCCAGAGGCACCGTaGTATCGTGCAGCTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PVPLEKEGVTEGLRAAGTLPEAP*YRAAAV Trigger: GACAGCAGCTGCACGATATCACGGTGCCTCTGGAAG...TGTCCCTGCAGCTCTTAGACCCTCGGTGACCCCTTCTTTCTCCAGGGGAACAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR TCA 90 bp | AGGGAAGTCAGACAGGAAAGCCACAGTGAAACCACGGCTGGCGGGGACATTGCCCTTCCAGAGGCACCGTaGTATCGTGCAGCTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: REVRQESHSETTAGGDIALPEAP*YRAAAV Trigger: GACAGCAGCTGCACGATATCACGGTGCCTCTGGAAG...GGCAATGTCCCCGCCAGCCGTGGTTTCACTGTGGCTTTCCTGTCTGACTTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CCA 90 bp | TTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGGTGCCTGGCTGCTGGGCTaGAAGTCGCTGACGATGATG | + |
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Preference number: 4 (lower is better) Translates to: FTFQHGCLPACSPGERRGAWLLG*KSLTMM Trigger: CATCATCGTCAGCGACTTCCAGCCCAGCAGCCAGGC...ACCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| 3UTR CAA 72 bp | AGGAAAGCCACAGTGAAACCACGGCTGGCGGGGACATaGCCAGATAAACTCAGCCTCTCCTCACTGTCACAC | + |
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Preference number: 4 (lower is better) Translates to: RKATVKPRLAGT*PDKLSLSSLSH Trigger: GTGTGACAGTGAGGAGAGGCTGAGTTTATCTGGCAATGTCCCCGCCAGCCGTGGTTTCACTGTGGCTTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR GCA 90 bp | GGCAGCAGTGGCAGGCACAGCTTCTCACTGGCTCAGTCTGGTTATTACAAGGGTACGATGATGCCGAGCTaGCGAATGTTCTCCACGAAC | + |
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Preference number: 4 (lower is better) Translates to: GSSGRHSFSLAQSGYYKGTMMPS*RMFSTN Trigger: GTTCGTGGAGAACATTCGGCAGCTCGGCATCATCGT...ACCCTTGTAATAACCAGACTGAGCCAGTGAGAAGCTGTGCCTGCCACTGCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR CCA 90 bp | CTGGCGGGGACATTGCCAGATAAACTCAGCCTCTCCTCACTGTCACACTGTCAGATAAAGTTTAGCTTCTaGCTCAGCCCCGCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LAGTLPDKLSLSSLSHCQIKFSF*LSPAWL Trigger: CAGCCAGGCGGGGCTGAGCCAGAAGCTAAACTTTAT...CTGACAGTGTGACAGTGAGGAGAGGCTGAGTTTATCTGGCAATGTCCCCGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CCA 90 bp | ACCTTTAGCACCAGAAAGGCCTCCAGTCAGGGTCTACACAGAATCACAACAGGCCAGCAGTCCACAGAGTaGGTGCTAAGCCTGTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: TFSTRKASSQGLHRITTGQQSTE*VLSLSA Trigger: TGCGGACAGGCTTAGCACCCACTCTGTGGACTGCTG...GCCTGTTGTGATTCTGTGTAGACCCTGACTGGAGGCCTTTCTGGTGCTAAAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| 3UTR CAA 72 bp | AGTAGGAGCCCCATCACATTTCACATTTCAGCACGGTaGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SRSPITFHISAR*SSCLFPWRKKG Trigger: CCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAATGTGATGGGGCTCCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR GCA 90 bp | ACCTTTAGCACCAGAAAGGCCTCCAGTCAGGGTCTACACAGAATCACAACAGGCACGATGATGCCGAGCTaGCGAATGTTCTCCACGAAC | + |
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Preference number: 4 (lower is better) Translates to: TFSTRKASSQGLHRITTGTMMPS*RMFSTN Trigger: GTTCGTGGAGAACATTCGGCAGCTCGGCATCATCGT...GCCTGTTGTGATTCTGTGTAGACCCTGACTGGAGGCCTTTCTGGTGCTAAAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CCA 90 bp | TTTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGGATAAAGTTTAGCTTCTaGCTCAGCCCCGCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FHISARLSSCLFPWRKKGIKFSF*LSPAWL Trigger: CAGCCAGGCGGGGCTGAGCCAGAAGCTAAACTTTAT...CCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR TCA 90 bp | CCTGTTCCCCTGGAGAAAGAAGGGGTCACCGAGGGTCTAAGAGCTGCAGGGACATGGGGATTCCGACCTTaGTCAATGTATTCAAAAACT | + |
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Preference number: 4 (lower is better) Translates to: PVPLEKEGVTEGLRAAGTWGFRP*SMYSKT Trigger: AGTTTTTGAATACATTGATCAAGGTCGGAATCCCCA...TGTCCCTGCAGCTCTTAGACCCTCGGTGACCCCTTCTTTCTCCAGGGGAACAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR GCA 90 bp | GCCCCATCACATTTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGACGTGCAGCTGCTGTCTaGATTTATCTATGTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: APSHFTFQHGCLPACSPGRAAAV*IYLCPV Trigger: TACAGGACATAGATAAATGCAGACAGCAGCTGCACG...TCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAATGTGATGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR GCA 90 bp | TCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGGTCATCTTGCCCTTGACTTaGTCGTTTTTAGCTAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SHFSTVVFLPVPLEKEGVILPLT*SFLARA Trigger: GGCTCTAGCTAAAAACGAGCAAGTCAAGGGCAAGAT...GACCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR GCA 90 bp | AAAGGCCTCCAGTCAGGGTCTACACAGAATCACAACAGGCACACTGATGTCAGCACATCACTTCCTGTCTaGCTCACCTTCATTGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: KGLQSGSTQNHNRHTDVSTSLPV*LTFIVS Trigger: CGACACAATGAAGGTGAGGCAGACAGGAAGTGATGT...GCTGACATCAGTGTGCCTGTTGTGATTCTGTGTAGACCCTGACTGGAGGCCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CCA 90 bp | ATTTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGTCTCCAGGCATTCTTTaGTGTAGAGCTGGGGATTCC | + |
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Preference number: 4 (lower is better) Translates to: ISHFSTVVFLPVPLEKEGSPGIL*CRAGDS Trigger: GGAATCCCCAGCTCTACACCAAAGAATGCCTGGAGA...CCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR CCA 90 bp | CACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGGTCAGAATGCTCCGATACTTaGCCATGTCTTCTGGAAACA | + |
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Preference number: 4 (lower is better) Translates to: HISARLSSCLFPWRKKGSECSDT*PCLLET Trigger: TGTTTCCAGAAGACATGGCCAAGTATCGGAGCATTC...TGACCCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR TCA 90 bp | TCCATGTCAAGACACAGCTCCCTAGAGCAGCCAAGTTCTCTGTGTGCCGTGTCATGGGGATTCCGACCTTaGTCAATGTATTCAAAAACT | + |
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Preference number: 4 (lower is better) Translates to: SMSRHSSLEQPSSLCAVSWGFRP*SMYSKT Trigger: AGTTTTTGAATACATTGATCAAGGTCGGAATCCCCA...TGACACGGCACACAGAGAACTTGGCTGCTCTAGGGAGCTGTGTCTTGACATGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR GCA 90 bp | CTACACAGAATCACAACAGGCACACTGATGTCAGCTGTCACCCAAGGGAAGTCACGTGCAGCTGCTGTCTaGATTTATCTATGTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LHRITTGTLMSAVTQGKSRAAAV*IYLCPV Trigger: TACAGGACATAGATAAATGCAGACAGCAGCTGCACG...TGACTTCCCTTGGGTGACAGCTGACATCAGTGTGCCTGTTGTGATTCTGTGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CCA 90 bp | TGTAAGCCCGTAACAATAAAGTTTAGCTTCTGGCTCAGCCCCGCCTaGCTGCTGGGCTGGAAGTCGCTGACGATGATGCCGAGCTGCCGA | + |
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Preference number: 5 (lower is better) Translates to: CKPVTIKFSFWLSPA*LLGWKSLTMMPSCR Trigger: TCGGCAGCTCGGCATCATCGTCAGCGACTTCCAGCCCAGCAGCCAGGCGGGGCTGAGCCAGAAGCTAAACTTTATTGTTACGGGCTTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS CCA 90 bp | ATGCTAGAAAGCCCACAGTGTAGCAGTACTCAGCAGTCCACAGAGTaGGTGCTAAGCCTGTCCGCAGGCTTGCTAGGAGCTCCCTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: MLESPQCSSTQQSTE*VLSLSAGLLGAPLS Trigger: GGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCACCCACTCTGTGGACTGCTGAGTACTGCTACACTGTGGGCTTTCTAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CAA 90 bp | AGACACAGCTCCCTAGAGCAGCCAAGTTCTCTGTGTGCCGTGTCACAGTGTAAAAGCCTGTCCGCAGGCTaGCTAGGAGCTCCCTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: RHSSLEQPSSLCAVSQCKSLSAG*LGAPLS Trigger: GGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCT...TTTACACTGTGACACGGCACACAGAGAACTTGGCTGCTCTAGGGAGCTGTGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS GCA 90 bp | GTGCTAAGCCTGTCCGCAGGCTTGCTAGGAGCTCCCTTGTCCGTGTaGAGACATCACTTCCTGTCTGCCTCACCTTCATTGTGTCGATCT | + |
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Preference number: 5 (lower is better) Translates to: VLSLSAGLLGAPLSV*RHHFLSASPSLCRS Trigger: AGATCGACACAATGAAGGTGAGGCAGACAGGAAGTGATGTCTGCACACGGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CAA 90 bp | GGCAGCAGTGGCAGGCACAGCTTCTCACTGGCTCAGTCTGGTTATTACAAGGGTCGAATGCTCCGATACTaGGCCATGTCTTCTGGAAAC | + |
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Preference number: 5 (lower is better) Translates to: GSSGRHSFSLAQSGYYKGRMLRY*AMSSGN Trigger: GTTTCCAGAAGACATGGCCAAGTATCGGAGCATTCG...ACCCTTGTAATAACCAGACTGAGCCAGTGAGAAGCTGTGCCTGCCACTGCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR CAA 90 bp | CTGAGGCACAGCTCTGCTCCCCCAGCCCGAGTCCCACAAGATCAAAATGATGGACTGGGGATTCCGACCTaGATCAATGTATTCAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: LRHSSAPPARVPQDQNDGLGIPT*INVFKN Trigger: GTTTTTGAATACATTGATCAAGGTCGGAATCCCCAG...TCCATCATTTTGATCTTGTGGGACTCGGGCTGGGGGAGCAGAGCTGTGCCTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS-3UTR CAA 90 bp | TCCATGTCAAGACACAGCTCCCTAGAGCAGCCAAGTTCTCTGTGTGCCGTGTCAGTGTCGATCTTGCCCTaGACTTGCTCGTTTTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: SMSRHSSLEQPSSLCAVSVSILP*TCSFLA Trigger: AGCTAAAAACGAGCAAGTCAAGGGCAAGATCGACAC...TGACACGGCACACAGAGAACTTGGCTGCTCTAGGGAGCTGTGTCTTGACATGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CAA 90 bp | AACAGGCACACTGATGTCAGCTGTCACCCAAGGGAAGTCAGACAGGAAAGCCACCTGGGGATTCCGACCTaGATCAATGTATTCAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: NRHTDVSCHPREVRQESHLGIPT*INVFKN Trigger: GTTTTTGAATACATTGATCAAGGTCGGAATCCCCAG...GTGGCTTTCCTGTCTGACTTCCCTTGGGTGACAGCTGACATCAGTGTGCCTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS-3UTR CAA 90 bp | ATTTCACATTTCAGCACGGTTGTCTTCCTGCCTGTTCCCCTGGAGAAAGAAGGGGTGTCGATCTTGCCCTaGACTTGCTCGTTTTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: ISHFSTVVFLPVPLEKEGVSILP*TCSFLA Trigger: AGCTAAAAACGAGCAAGTCAAGGGCAAGATCGACAC...CCCTTCTTTCTCCAGGGGAACAGGCAGGAAGACAACCGTGCTGAAATGTGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022089.10 |
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| CDS TCA 90 bp | GATTCCGACCTTGATCAATGTATTCAAAAACTTCCAGAGGCACCGTaGTATCGTGCAGCTGCTGTCTGCATTTATCTATGTCCTGTAAGC | + |
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Preference number: 5 (lower is better) Translates to: DSDLDQCIQKLPEAP*YRAAAVCIYLCPVS Trigger: GCTTACAGGACATAGATAAATGCAGACAGCAGCTGCACGATATCACGGTGCCTCTGGAAGTTTTTGAATACATTGATCAAGGTCGGAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS GCA 90 bp | TCAATGTATTCAAAAACTTCCAGAGGCACCGTGATATCGTGCAGCTaGTGTCTGCATTTATCTATGTCCTGTAAGCCCGTAACAATAAAG | + |
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Preference number: 5 (lower is better) Translates to: SMYSKTSRGTVISCS*CLHLSMSCKPVTIK Trigger: CTTTATTGTTACGGGCTTACAGGACATAGATAAATGCAGACAGCAGCTGCACGATATCACGGTGCCTCTGGAAGTTTTTGAATACATTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS CCA 72 bp | TTTAGCTTCTGGCTCAGCCCCGCCTGGCTGCTGGGCTaGAAGTCGCTGACGATGATGCCGAGCTGCCGAATG | + |
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Preference number: 6 (lower is better) Translates to: FSFWLSPAWLLG*KSLTMMPSCRM Trigger: CATTCGGCAGCTCGGCATCATCGTCAGCGACTTCCAGCCCAGCAGCCAGGCGGGGCTGAGCCAGAAGCTAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS GCA 72 bp | CTGCTGGGCTGGAAGTCGCTGACGATGATGCCGAGCTaGCGAATGTTCTCCACGAACTTCTCCAGGTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LLGWKSLTMMPS*RMFSTNFSRCS Trigger: GGAGCACCTGGAGAAGTTCGTGGAGAACATTCGGCAGCTCGGCATCATCGTCAGCGACTTCCAGCCCAGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS CAA 72 bp | CAGTCCACAGAGTGGGTGCTAAGCCTGTCCGCAGGCTaGCTAGGAGCTCCCTTGTCCGTGTGCAGACATCAC | + |
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Preference number: 6 (lower is better) Translates to: QSTEWVLSLSAG*LGAPLSVCRHH Trigger: GTGATGTCTGCACACGGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCACCCACTCTGTGGACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CCA 72 bp | AGCCCACAGTGTAGCAGTACTCAGCAGTCCACAGAGTaGGTGCTAAGCCTGTCCGCAGGCTTGCTAGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: SPQCSSTQQSTE*VLSLSAGLLGA Trigger: AGCTCCTAGCAAGCCTGCGGACAGGCTTAGCACCCACTCTGTGGACTGCTGAGTACTGCTACACTGTGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CAA 72 bp | GTGCTAAGCCTGTCCGCAGGCTTGCTAGGAGCTCCCTaGTCCGTGTGCAGACATCACTTCCTGTCTGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: VLSLSAGLLGAP*SVCRHHFLSAS Trigger: TGAGGCAGACAGGAAGTGATGTCTGCACACGGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CAA 90 bp | ACAGAGTGGGTGCTAAGCCTGTCCGCAGGCTTGCTAGGAGCTCCCTaGTCCGTGTGCAGACATCACTTCCTGTCTGCCTCACCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: TEWVLSLSAGLLGAP*SVCRHHFLSASPSL Trigger: CAATGAAGGTGAGGCAGACAGGAAGTGATGTCTGCACACGGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCACCCACTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CAA 90 bp | AGTACTCAGCAGTCCACAGAGTGGGTGCTAAGCCTGTCCGCAGGCTaGCTAGGAGCTCCCTTGTCCGTGTGCAGACATCACTTCCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: STQQSTEWVLSLSAG*LGAPLSVCRHHFLS Trigger: AGACAGGAAGTGATGTCTGCACACGGACAAGGGAGCTCCTAGCAAGCCTGCGGACAGGCTTAGCACCCACTCTGTGGACTGCTGAGTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221893.2 |
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| CDS CAA 90 bp | AGCCCTCTCCAGGCATTCTTTGGTGTAGAGCTGGGGATTCCGACCTaGATCAATGTATTCAAAAACTTCCAGAGGCACCGTGATATCGTG | + |
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Preference number: 6 (lower is better) Translates to: SPLQAFFGVELGIPT*INVFKNFQRHRDIV Trigger: CACGATATCACGGTGCCTCTGGAAGTTTTTGAATACATTGATCAAGGTCGGAATCCCCAGCTCTACACCAAAGAATGCCTGGAGAGGGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000223376.2 |
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| CDS GCA 72 bp | TCAAAAACTTCCAGAGGCACCGTGATATCGTGCAGCTaGTGTCTGCATTTATCTATGTCCTGTAAGCCCGTA | + |
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Preference number: 6 (lower is better) Translates to: SKTSRGTVISCS*CLHLSMSCKPV Trigger: TACGGGCTTACAGGACATAGATAAATGCAGACAGCAGCTGCACGATATCACGGTGCCTCTGGAAGTTTTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS GCA 72 bp | ATGTATTCAAAAACTTCCAGAGGCACCGTGATATCGTaGAGCTGCTGTCTGCATTTATCTATGTCCTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: MYSKTSRGTVIS*SCCLHLSMSCK Trigger: CTTACAGGACATAGATAAATGCAGACAGCAGCTGCACGATATCACGGTGCCTCTGGAAGTTTTTGAATACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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| CDS TCA 72 bp | CTTGATCAATGTATTCAAAAACTTCCAGAGGCACCGTaGTATCGTGCAGCTGCTGTCTGCATTTATCTATGT | + |
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Preference number: 6 (lower is better) Translates to: LDQCIQKLPEAP*YRAAAVCIYLC Trigger: ACATAGATAAATGCAGACAGCAGCTGCACGATATCACGGTGCCTCTGGAAGTTTTTGAATACATTGATCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000022089.10 ENSMUST00000221893.2 ENSMUST00000222387.2 ENSMUST00000223376.2 |
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