Pregenerated sensors for ME2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024556Ensembl transcript IDs: ENSMUST00000025439.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTTGCACGTGACAGTCCAGTTTGTCTAAAGGCAGCAGTGGCTCCTCCCACTCTTTTCTTTGGAATTCGGTaGGCACTCACTCCTTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: VARDSPVCLKAAVAPPTLFFGIR*ALTPSQ Trigger: TTGAGAAGGAGTGAGTGCTCACCGAATTCCAAAGAA...AAGAGTGGGAGGAGCCACTGCTGCCTTTAGACAAACTGGACTGTCACGTGCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR-3UTR CCA 90 bp | CCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTGCCCAGAACTGGGCTGTaGGCACTACAGTATAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: PLSSEPIIHSQQRKTMKLPRTGL*ALQYSQ Trigger: CTGGCTATACTGTAGTGCCCACAGCCCAGTTCTGGG...CAGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR-3UTR TCA 90 bp | TCTAAAGGCAGCAGTGGCTCCTCCCACTCTTCTATAATGCTAGTTAGCACTGATCGTCAGAGCAGAAAGTaGCAAGAACAGAGCAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: SKGSSGSSHSSIMLVSTDRQSRK*QEQSSF Trigger: GAAACTGCTCTGTTCTTGTCACTTTCTGCTCTGACG...ATCAGTGCTAACTAGCATTATAGAAGAGTGGGAGGAGCCACTGCTGCCTTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR-3UTR CCA 90 bp | TTGGTGCTGACAAGTTTTCTTTGGAATTCGGTGAGCACTCACTCCTTCTCAACGAAAAGCCAAGCAAAGTaGGTACGGAAGAATAAACCA | + |
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Preference number: 2 (lower is better) Translates to: LVLTSFLWNSVSTHSFSTKSQAK*VRKNKP Trigger: TGGTTTATTCTTCCGTACCCACTTTGCTTGGCTTTT...CGTTGAGAAGGAGTGAGTGCTCACCGAATTCCAAAGAAAACTTGTCAGCACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR-3UTR TCA 90 bp | GTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAATTCGGTAGAATAAACCACAGATaGCACCGTAACTCAGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: VTRTEQFLGADKFSLEFGRINHR*HRNSEN Trigger: ATTCTCTGAGTTACGGTGTCATCTGTGGTTTATTCT...ACCGAATTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR TCA 72 bp | ATCTGTCTAACTACAAAGGGACGTCAGAGCAGAAAGTaGCAAGAACAGAGCAGTTTCTTGGTGCTGACAAGT | + |
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Preference number: 3 (lower is better) Translates to: ICLTTKGRQSRK*QEQSSFLVLTS Trigger: ACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCACTTTCTGCTCTGACGTCCCTTTGTAGTTAGACAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR TCA 72 bp | TTATTAATAAAAGTGGGTTTTGTACACTGTTGCACGTaGCAGTCCAGTTTGTCTAAAGGCAGCAGTGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: LLIKVGFVHCCT*QSSLSKGSSGS Trigger: GGAGCCACTGCTGCCTTTAGACAAACTGGACTGTCACGTGCAACAGTGTACAAAACCCACTTTTATTAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| 3UTR TCA 72 bp | GCCAAGCAAAGTGGGTACGGAAGAATAAACCACAGATaGCACCGTAACTCAGAGAATATTATCTTTTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: AKQSGYGRINHR*HRNSENIIFLS Trigger: AGACAAAAAGATAATATTCTCTGAGTTACGGTGTCATCTGTGGTTTATTCTTCCGTACCCACTTTGCTTGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | CACTCCTTCTCAACGTTCTGTGCTCACGTGCACAGCACTGGAGGGCTGAGGGGGTTCCTTGGCCTGGGGTaGAGACTCGTCCATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HSFSTFCAHVHSTGGLRGFLGLG*RLVHPG Trigger: TCCAGGATGGACGAGTCTTCACCCCAGGCCAAGGAA...CCCCCTCAGCCCTCCAGTGCTGTGCACGTGAGCACAGAACGTTGAGAAGGAGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | CACTCCTTCTCAACGTTCTGTGCTCACGTGCACAGCACTGGAGGGCTGAGGGGGTTCTTGGATTCAACATaGGTGGCTTGCCCTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: HSFSTFCAHVHSTGGLRGFLDST*VACPSL Trigger: AAGAGAAGGGCAAGCCACTCATGTTGAATCCAAGAA...CCCCCTCAGCCCTCCAGTGCTGTGCACGTGAGCACAGAACGTTGAGAAGGAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | CACTCCTTCTCAACGTTCTGTGCTCACGTGCACAGCACTGGAGGGCTGAGGGGGACTGCAGCTGTCCCTTaGATGTCATCATTGAAGGTA | + |
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Preference number: 4 (lower is better) Translates to: HSFSTFCAHVHSTGGLRGTAAVP*MSSLKV Trigger: TACCTTCAATGATGACATTCAAGGGACAGCTGCAGT...CCCCCTCAGCCCTCCAGTGCTGTGCACGTGAGCACAGAACGTTGAGAAGGAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | GTTGCACGTGACAGTCCAGTTTGTCTAAAGGCAGCAGTGGCTCCTCCCACTCTTCTGAGGAGGTGTCAGTaGAGACTCTGGCCAGTCATA | + |
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Preference number: 4 (lower is better) Translates to: VARDSPVCLKAAVAPPTLLRRCQ*RLWPVI Trigger: TATGACTGGCCAGAGTCTTCACTGACACCTCCTCAG...AAGAGTGGGAGGAGCCACTGCTGCCTTTAGACAAACTGGACTGTCACGTGCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | CACTCCTTCTCAACGTTCTGTGCTCACGTGCACAGCACTGGAGGGCTGAGGGGGACCTGGGAAAATATATaGATTGTTTCCTTGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HSFSTFCAHVHSTGGLRGTWENI*IVSLAW Trigger: CCAGGCCAAGGAAACAATGCATATATTTTCCCAGGT...CCCCCTCAGCCCTCCAGTGCTGTGCACGTGAGCACAGAACGTTGAGAAGGAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | GTTGCACGTGACAGTCCAGTTTGTCTAAAGGCAGCAGTGGCTCCTCCCACTCTTAAGATGTGCCCATATTaGCAGCAGGCAAGACCAACT | + |
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Preference number: 4 (lower is better) Translates to: VARDSPVCLKAAVAPPTLKMCPY*QQARPT Trigger: AGTTGGTCTTGCCTGCTGTCAATATGGGCACATCTT...AAGAGTGGGAGGAGCCACTGCTGCCTTTAGACAAACTGGACTGTCACGTGCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | AGATACATTCACGTTAACAGCGACAGTACCGTCGCAAGCTTAAAGCAGAGCGCACTGCGCCTCCTCTTCTaGGAGACCACTTTCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: RYIHVNSDSTVASLKQSALRLLF*ETTFHH Trigger: ATGGTGGAAAGTGGTCTCTCAGAAGAGGAGGCGCAG...TGCGCTCTGCTTTAAGCTTGCGACGGTACTGTCGCTGTTAACGTGAATGTATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CCA 90 bp | GGCAGCAGTGGCTCCTCCCACTCTTCTATAATGCTAGTTAGCACTGATTTAGTTCAAATGGGCTGCCACTaGCAAACAGACACCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GSSGSSHSSIMLVSTDLVQMGCH*QTDTCP Trigger: AGGGCAGGTGTCTGTTTGCCAGTGGCAGCCCATTTG...AACTAAATCAGTGCTAACTAGCATTATAGAAGAGTGGGAGGAGCCACTGCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CCA 90 bp | AGATACATTCACGTTAACAGCGACAGTACCGTCGCAAGCTTAAAGCAGAGCGCAATCCTGGAGTTTCACTaGCTCAAATGGGCTGCCACT | + |
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Preference number: 4 (lower is better) Translates to: RYIHVNSDSTVASLKQSAILEFH*LKWAAT Trigger: AGTGGCAGCCCATTTGAGCCAGTGAAACTCCAGGAT...TGCGCTCTGCTTTAAGCTTGCGACGGTACTGTCGCTGTTAACGTGAATGTATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | CAGAAAGTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAACCCTTCTCTTTCAGGTaGACTCGGCGGCAGGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: QKVTRTEQFLGADKFSLEPFSFR*TRRQVK Trigger: CTTGACCTGCCGCCGAGTGCACCTGAAAGAGAAGGG...TTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCACTTTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | TCTAAAGGCAGCAGTGGCTCCTCCCACTCTTCTATAATGCTAGTTAGCACTGATACCAGACAGAGCAACTaGAGCTGTCCCTTGAATGTC | + |
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Preference number: 4 (lower is better) Translates to: SKGSSGSSHSSIMLVSTDTRQSN*SCPLNV Trigger: GACATTCAAGGGACAGCTGCAGTTGCTCTGTCTGGT...ATCAGTGCTAACTAGCATTATAGAAGAGTGGGAGGAGCCACTGCTGCCTTTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CCA 90 bp | AGATACATTCACGTTAACAGCGACAGTACCGTCGCAAGCTTAAAGCAGAGCGCATATGCATTGTTTCCTTaGCCTGGGGTGAAGACTCGT | + |
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Preference number: 4 (lower is better) Translates to: RYIHVNSDSTVASLKQSAYALFP*PGVKTR Trigger: ACGAGTCTTCACCCCAGGCCAAGGAAACAATGCATA...TGCGCTCTGCTTTAAGCTTGCGACGGTACTGTCGCTGTTAACGTGAATGTATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | CCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTGGAAGCTTCTCTTCTGTaGTCTGAGGAGGTGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: PLSSEPIIHSQQRKTMKLEASLL*SEEVSV Trigger: CACTGACACCTCCTCAGATCACAGAAGAGAAGCTTC...CAGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | GGCAGCAGTGGCTCCTCCCACTCTTCTATAATGCTAGTTAGCACTGATTTAGTTATCCAGATCTTTCTCTaGGCCTCCTCTTCTGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GSSGSSHSSIMLVSTDLVIQIFL*ASSSER Trigger: TCTCTCAGAAGAGGAGGCGCAGAGAAAGATCTGGAT...AACTAAATCAGTGCTAACTAGCATTATAGAAGAGTGGGAGGAGCCACTGCTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | GTTGCACGTGACAGTCCAGTTTGTCTAAAGGCAGCAGTGGCTCCTCCCACTCTTCTTAAGTTTATTTACTaGATCTTCAAAAGTCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VARDSPVCLKAAVAPPTLLKFIY*IFKSRR Trigger: CCTGCGACTTTTGAAGATGCAGTAAATAAACTTAAG...AAGAGTGGGAGGAGCCACTGCTGCCTTTAGACAAACTGGACTGTCACGTGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CCA 90 bp | TCCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTATTGTTTCCTTGGCCTaGGGTGAAGACTCGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: STKLGTYYPFSAEKDDETIVSLA*GEDSSI Trigger: GATGGACGAGTCTTCACCCCAGGCCAAGGAAACAAT...AGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | TGTATTTCCCCAAATCTGTCTAACTACAAAGGGACGTCAGAGCAGAAAGTGACATTCTCTTCTGTGATCTaGGGAGGTGTCAGTGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: CISPNLSNYKGTSEQKVTFSSVI*GGVSED Trigger: GTCTTCACTGACACCTCCTCAGATCACAGAAGAGAA...TGTCACTTTCTGCTCTGACGTCCCTTTGTAGTTAGACAGATTTGGGGAAATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR GCA 90 bp | GGTGCTGACAAGTTTTCTTTGGAATTCGGTGAGCACTCACTCCTTCTCAACGTTAGCGTACAGGTACTCTaGAAGTTTAATAGCTATGTT | + |
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Preference number: 4 (lower is better) Translates to: GADKFSLEFGEHSLLLNVSVQVL*KFNSYV Trigger: AACATAGCTATTAAACTTGCAGAGTACCTGTACGCT...AACGTTGAGAAGGAGTGAGTGCTCACCGAATTCCAAAGAAAACTTGTCAGCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR TCA 90 bp | TCCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTCCATTGATAGAACTATaGGATTGGCAATTCCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: STKLGTYYPFSAEKDDETPLIEL*DWQFQV Trigger: CACTTGGAATTGCCAATCTCATAGTTCTATCAATGG...AGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CCA 90 bp | CAGAAAGTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAATTATTAATAACTCTTTaGGCCGCAAGAAGACCAGAC | + |
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Preference number: 4 (lower is better) Translates to: QKVTRTEQFLGADKFSLELLITL*AARRPD Trigger: GTCTGGTCTTCTTGCGGCCCAAAGAGTTATTAATAA...TTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCACTTTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | GGTGCTGACAAGTTTTCTTTGGAATTCGGTGAGCACTCACTCCTTCTCAACGTTCTCACGTATCTGGCCTaGTCCTCGGGTTCTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: GADKFSLEFGEHSLLLNVLTYLA*SSGSGY Trigger: GTACCCAGAACCCGAGGACAAGGCCAGATACGTGAG...AACGTTGAGAAGGAGTGAGTGCTCACCGAATTCCAAAGAAAACTTGTCAGCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS TCA 90 bp | ATTATAGGTCTCTCGTTGATAGAGGCCATGGCTTTGATTACACCGTaGGTAAAAAGCGGGCCGGCACCTGCCACTCCAATTATAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: IIGLSLIEAMALITP*VKSGPAPATPIITE Trigger: TTCAGTTATAATTGGAGTGGCAGGTGCCGGCCCGCTTTTTACTCACGGTGTAATCAAAGCCATGGCCTCTATCAACGAGAGACCTATAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS CCA 90 bp | TCTCCTAAAGATGTGCCCATATTGACAGCAGGCAAGACCAACTGTTaGCGTGTACACAATCGGCATCAGACTTTCAATATCATCCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPKDVPILTAGKTNC*RVHNRHQTFNIILQ Trigger: CTGCAGGATGATATTGAAAGTCTGATGCCGATTGTGTACACGCCAACAGTTGGTCTTGCCTGCTGTCAATATGGGCACATCTTTAGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | CCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTGTTCAACATGAGTGGCTaGCCCTTCTCTTTCAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: PLSSEPIIHSQQRKTMKLFNMSG*PFSFRC Trigger: GCACCTGAAAGAGAAGGGCAAGCCACTCATGTTGAA...CAGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | TTGGTGCTGACAAGTTTTCTTTGGAATTCGGTGAGCACTCACTCCTTCTCAACGGGGAAAATATATGCATaGTTTCCTTGGCCTGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LVLTSFLWNSVSTHSFSTGKIYA*FPWPGV Trigger: CACCCCAGGCCAAGGAAACAATGCATATATTTTCCC...CGTTGAGAAGGAGTGAGTGCTCACCGAATTCCAAAGAAAACTTGTCAGCACCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | CCACTAAGCTCGGAACCTATTATCCATTCTCAGCAGAGAAAGACGATGAAACTGAAAGATGTGCCCATATaGACAGCAGGCAAGACCAAC | + |
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Preference number: 5 (lower is better) Translates to: PLSSEPIIHSQQRKTMKLKDVPI*TAGKTN Trigger: GTTGGTCTTGCCTGCTGTCAATATGGGCACATCTTT...CAGTTTCATCGTCTTTCTCTGCTGAGAATGGATAATAGGTTCCGAGCTTAGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | CAGAAAGTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAAATATGCATTGTTTCCTaGGCCTGGGGTGAAGACTCG | + |
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Preference number: 5 (lower is better) Translates to: QKVTRTEQFLGADKFSLEICIVS*AWGEDS Trigger: CGAGTCTTCACCCCAGGCCAAGGAAACAATGCATAT...TTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCACTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | TGTATTTCCCCAAATCTGTCTAACTACAAAGGGACGTCAGAGCAGAAAGTGACAATTATAGGTCTCTCGTaGATAGAGGCCATGGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: CISPNLSNYKGTSEQKVTIIGLS*IEAMAL Trigger: CAAAGCCATGGCCTCTATCAACGAGAGACCTATAAT...TGTCACTTTCTGCTCTGACGTCCCTTTGTAGTTAGACAGATTTGGGGAAATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | GTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAATTCGGTTTTATTAATAACTCTTaGGGCCGCAAGAAGACCAGA | + |
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Preference number: 5 (lower is better) Translates to: VTRTEQFLGADKFSLEFGFINNS*GRKKTR Trigger: TCTGGTCTTCTTGCGGCCCAAAGAGTTATTAATAAA...ACCGAATTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS-3UTR CAA 90 bp | CAGAAAGTGACAAGAACAGAGCAGTTTCTTGGTGCTGACAAGTTTTCTTTGGAAGATAGAACTATGAGATaGGCAATTCCAAGTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: QKVTRTEQFLGADKFSLEDRTMR*AIPSAA Trigger: AGCTGCACTTGGAATTGCCAATCTCATAGTTCTATC...TTCCAAAGAAAACTTGTCAGCACCAAGAAACTGCTCTGTTCTTGTCACTTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS CCA 72 bp | AGTCGCAGGTATGCTCTCTGGGGCCGCATGGGCATATaGTTCCTGGTTGCTATCTATGCTAGCAGTCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: SRRYALWGRMGI*FLVAIYASSPP Trigger: GGGCGGACTGCTAGCATAGATAGCAACCAGGAACCATATGCCCATGCGGCCCCAGAGAGCATACCTGCGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS TCA 72 bp | CTCTCGTTGATAGAGGCCATGGCTTTGATTACACCGTaGGTAAAAAGCGGGCCGGCACCTGCCACTCCAATT | + |
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Preference number: 6 (lower is better) Translates to: LSLIEAMALITP*VKSGPAPATPI Trigger: AATTGGAGTGGCAGGTGCCGGCCCGCTTTTTACTCACGGTGTAATCAAAGCCATGGCCTCTATCAACGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS GCA 72 bp | TATAAAACGGATCTTTTAATAGTGCCATGTTATCAGTaGCCACGTCGATGCACACGGGCAGGCACTTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: YKTDLLIVPCYQ*PRRCTRAGTSR Trigger: CCGAGAAGTGCCTGCCCGTGTGCATCGACGTGGGCACTGATAACATGGCACTATTAAAAGATCCGTTTTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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| CDS CCA 72 bp | GATGTGCCCATATTGACAGCAGGCAAGACCAACTGTTaGCGTGTACACAATCGGCATCAGACTTTCAATATC | + |
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Preference number: 6 (lower is better) Translates to: DVPILTAGKTNC*RVHNRHQTFNI Trigger: GATATTGAAAGTCTGATGCCGATTGTGTACACGCCAACAGTTGGTCTTGCCTGCTGTCAATATGGGCACATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025439.5 |
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