Pregenerated sensors for MDP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002329Ensembl transcript IDs: ENSMUST00000002400.7
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCTGGGCCTCTTCTTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTaGCCAGCACCTCCCAGGAGGCCCAATGTCTCCCAGGGTCACACC | + |
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Preference number: 1 (lower is better) Translates to: SWASSCLALVVPIPF*PAPPRRPNVSQGHT Trigger: GGTGTGACCCTGGGAGACATTGGGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 90 bp | CAAGGCGGTTGGATAAGGTTGGCCTCTGGCAACAGGGTGCCAGGCTaGGTCAAGGTTTTCAGGCCAGCCTGTCTCCTGGGCCTCTTCTTG | + |
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Preference number: 1 (lower is better) Translates to: QGGWIRLASGNRVPG*VKVFRPACLLGLFL Trigger: CAAGAAGAGGCCCAGGAGACAGGCTGGCCTGAAAACCTTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 90 bp | ACAGGGTGCCAGGCTGGGTCAAGGTTTTCAGGCCAGCCTGTCTCCTaGGCCTCTTCTTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: TGCQAGSRFSGQPVS*ASSCLALVVPIPFW Trigger: CCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGAGACAGGCTGGCCTGAAAACCTTGACCCAGCCTGGCACCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 90 bp | GGGTCACACCTCCTAAAGAGTCTGCCGAGTCCAGAGTCCATTCATTaGTCTCTCTCTCCCGCCTCTATCCCTCGGCTTGCCTGCCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: GSHLLKSLPSPESIH*SLSPASIPRLACLP Trigger: AGGAAGGCAGGCAAGCCGAGGGATAGAGGCGGGAGAGAGAGAGCAATGAATGGACTCTGGACTCGGCAGACTCTTTAGGAGGTGTGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 90 bp | TCCATTCATTGCTCTCTCTCTCCCGCCTCTATCCCTCGGCTTGCCTaGCTTCCTCTAGACTATCACCATTCTGAGAAGGGCCTTGGCCAA | + |
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Preference number: 1 (lower is better) Translates to: SIHCSLSPASIPRLA*LPLDYHHSEKGLGQ Trigger: TTGGCCAAGGCCCTTCTCAGAATGGTGATAGTCTAGAGGAAGGCAGGCAAGCCGAGGGATAGAGGCGGGAGAGAGAGAGCAATGAATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 90 bp | ATGGAAACAGACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGCCTaGTCTTCCAGAGGTCCTGAGGTCAATTCCCAGCAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: METDWRDGSVVKSTA*SSRGPEVNSQQPHG Trigger: ACCATGTGGTTGCTGGGAATTGACCTCAGGACCTCTGGAAGAGCAGGCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCTGTTTCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 90 bp | GTTTACATGTTAGAAAAATGGAAACAGACTGGAGAGATGGCTCAGTaGTTAAGAGCACTGCCTGCTCTTCCAGAGGTCCTGAGGTCAATT | + |
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Preference number: 1 (lower is better) Translates to: VYMLEKWKQTGEMAQ*LRALPALPEVLRSI Trigger: AATTGACCTCAGGACCTCTGGAAGAGCAGGCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCTGTTTCCATTTTTCTAACATGTAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 90 bp | GATAGCCATGACATCATCAATCAGGATATAGCGCAATTAAAACCTTaGAGGGACAAAGCCTCGTGCTATGGTTGGCTCATTCCTGAGCTA | + |
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Preference number: 1 (lower is better) Translates to: DSHDIINQDIAQLKP*RDKASCYGWLIPEL Trigger: TAGCTCAGGAATGAGCCAACCATAGCACGAGGCTTTGTCCCTCCAAGGTTTTAATTGCGCTATATCCTGATTGATGATGTCATGGCTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CAA 90 bp | CACCCCCTGACTCAGTCCAGCTCAAGGCTGACTGGGACAAGGCGGTaGGATAAGGTTGGCCTCTGGCAACAGGGTGCCAGGCTGGGTCAA | + |
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Preference number: 2 (lower is better) Translates to: HPLTQSSSRLTGTRR*DKVGLWQQGARLGQ Trigger: TTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCCTTGTCCCAGTCAGCCTTGAGCTGGACTGAGTCAGGGGGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CAA 90 bp | TTTCAGGCCAGCCTGTCTCCTGGGCCTCTTCTTGCCTGGCTCTTGTaGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGGCCCAATG | + |
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Preference number: 2 (lower is better) Translates to: FQASLSPGPLLAWLL*FPFPSGQHLPGGPM Trigger: CATTGGGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGAGACAGGCTGGCCTGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR GCA 90 bp | TCTGGCCAGCACCTCCCAGGAGGCCCAATGTCTCCCAGGGTCACACCTCCTAAAATCCCTCGGCTTGCCTaGCTTCCTCTAGACTATCAC | + |
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Preference number: 2 (lower is better) Translates to: SGQHLPGGPMSPRVTPPKIPRLA*LPLDYH Trigger: GTGATAGTCTAGAGGAAGGCAGGCAAGCCGAGGGAT...TTTAGGAGGTGTGACCCTGGGAGACATTGGGCCTCCTGGGAGGTGCTGGCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CCA 90 bp | ATGGTTGGCTCATTCCTGAGCTACTCCCTACTACCAGAAAAGGCCGGCCGGCCCGGAGAGATGGCTCAGTaGTTAAGAGCACTGCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: MVGSFLSYSLLPEKAGRPGEMAQ*LRALPA Trigger: AGCAGGCAGTGCTCTTAACCACTGAGCCATCTCTCC...GGGCCGGCCGGCCTTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR GCA 90 bp | GGGACAAAGCCTCGTGCTATGGTTGGCTCATTCCTGAGCTACTCCCTACTACCAGTTAAGAGCACTGCCTaGTCTTCCAGAGGTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: GTKPRAMVGSFLSYSLLPVKSTA*SSRGPE Trigger: CTCAGGACCTCTGGAAGAGCAGGCAGTGCTCTTAAC...TGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCATAGCACGAGGCTTTGTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CCA 90 bp | TTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGGCCAAGGAAACAACAACCTaGTGCACTCTAATCAGGACA | + |
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Preference number: 2 (lower is better) Translates to: LPGSCCSHSLLASTSQEAKETTT*CTLIRT Trigger: TGTCCTGATTAGAGTGCACCAGGTTGTTGTTTCCTT...GGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CCA 90 bp | GGCGGTTGGATAAGGTTGGCCTCTGGCAACAGGGTGCCAGGCTGGGTCAAGGTTTACATGTTAGAAAAATaGAAACAGACTGGAGAGATG | + |
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Preference number: 2 (lower is better) Translates to: GGWIRLASGNRVPGWVKVYMLEK*KQTGEM Trigger: CATCTCTCCAGTCTGTTTCCATTTTTCTAACATGTA...AACCTTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CAA 90 bp | TTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGGCCATTCTGAGAAGGGCCTaGGCCAATCCCTCCAGGATA | + |
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Preference number: 3 (lower is better) Translates to: LPGSCCSHSLLASTSQEAILRRA*ANPSRI Trigger: TATCCTGGAGGGATTGGCCAAGGCCCTTCTCAGAAT...GGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR TCA 72 bp | GAGGGACAAAGCCTCGTGCTATGGTTGGCTCATTCCTaGGCTACTCCCTACTACCAGAAAAGGCCGGCCGGC | + |
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Preference number: 3 (lower is better) Translates to: EGQSLVLWLAHS*ATPYYQKRPAG Trigger: GCCGGCCGGCCTTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCATAGCACGAGGCTTTGTCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | TCTTCTTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTaGCCAGCACCTCCCAGGAGGCCCAATGTCTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: SSCLALVVPIPF*PAPPRRPNVSQ Trigger: CTGGGAGACATTGGGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | CTGACTGGGACAAGGCGGTTGGATAAGGTTGGCCTCTaGCAACAGGGTGCCAGGCTGGGTCAAGGTTTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LTGTRRLDKVGL*QQGARLGQGFQ Trigger: CTGAAAACCTTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCCTTGTCCCAGTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 72 bp | TGCTCTCTCTCTCCCGCCTCTATCCCTCGGCTTGCCTaGCTTCCTCTAGACTATCACCATTCTGAGAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: CSLSPASIPRLA*LPLDYHHSEKG Trigger: GCCCTTCTCAGAATGGTGATAGTCTAGAGGAAGGCAGGCAAGCCGAGGGATAGAGGCGGGAGAGAGAGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGGGCCTCTTCTTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCAGCGCAATTAAAACCTaGGAGGGACAAAGCCTCGTG | + |
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Preference number: 3 (lower is better) Translates to: LLGLFLPGSCCSHSLLASSAIKT*EGQSLV Trigger: CACGAGGCTTTGTCCCTCCAAGGTTTTAATTGCGCT...GCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR TCA 72 bp | TCGGCTTGCCTGCCTTCCTCTAGACTATCACCATTCTaGGAAGGGCCTTGGCCAATCCCTCCAGGATATAGA | + |
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Preference number: 3 (lower is better) Translates to: SACLPSSRLSPF*EGPWPIPPGYR Trigger: TCTATATCCTGGAGGGATTGGCCAAGGCCCTTCTCAGAATGGTGATAGTCTAGAGGAAGGCAGGCAAGCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | CCCCACTATTTGAAACCGTTGGAGGAGGTCTCAGGGTaGGTTCCAACACAAGGAAACAACAACCTGGTGCAC | + |
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Preference number: 3 (lower is better) Translates to: PHYLKPLEEVSG*VPTQGNNNLVH Trigger: GTGCACCAGGTTGTTGTTTCCTTGTGTTGGAACCCACCCTGAGACCTCCTCCAACGGTTTCAAATAGTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR-3UTR CAA 90 bp | GGCGGTTGGATAAGGTTGGCCTCTGGCAACAGGGTGCCAGGCTGGGTCAAGGTTCCTGACAAGGCTTTCTaGATTTTAGTTTTACACTGC | + |
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Preference number: 3 (lower is better) Translates to: GGWIRLASGNRVPGWVKVPDKAF*ILVLHC Trigger: GCAGTGTAAAACTAAAATCAAGAAAGCCTTGTCAGG...AACCTTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR TCA 72 bp | ACAAAGAAATGCACAGCGTTATGGCACCCCACTATTTaGAACCGTTGGAGGAGGTCTCAGGGTGGGTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: TKKCTALWHPTI*NRWRRSQGGFQ Trigger: TTGGAACCCACCCTGAGACCTCCTCCAACGGTTTCAAATAGTGGGGTGCCATAACGCTGTGCATTTCTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 72 bp | ATAGCGCAATTAAAACCTTGGAGGGACAAAGCCTCGTaGTATGGTTGGCTCATTCCTGAGCTACTCCCTACT | + |
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Preference number: 3 (lower is better) Translates to: IAQLKPWRDKAS*YGWLIPELLPT Trigger: AGTAGGGAGTAGCTCAGGAATGAGCCAACCATAGCACGAGGCTTTGTCCCTCCAAGGTTTTAATTGCGCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | TTAAAACCTTGGAGGGACAAAGCCTCGTGCTATGGTTaGCTCATTCCTGAGCTACTCCCTACTACCAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: LKPWRDKASCYG*LIPELLPTTRK Trigger: TTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCATAGCACGAGGCTTTGTCCCTCCAAGGTTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR GCA 72 bp | CAGGGTGGGTTCCAACACAAGGAAACAACAACCTGGTaGACTCTAATCAGGACACAACTTCAGTTTACATGT | + |
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Preference number: 3 (lower is better) Translates to: QGGFQHKETTTW*TLIRTQLQFTC Trigger: ACATGTAAACTGAAGTTGTGTCCTGATTAGAGTGCACCAGGTTGTTGTTTCCTTGTGTTGGAACCCACCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | TCTCAGGGTGGGTTCCAACACAAGGAAACAACAACCTaGTGCACTCTAATCAGGACACAACTTCAGTTTACA | + |
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Preference number: 3 (lower is better) Translates to: SQGGFQHKETTT*CTLIRTQLQFT Trigger: TGTAAACTGAAGTTGTGTCCTGATTAGAGTGCACCAGGTTGTTGTTTCCTTGTGTTGGAACCCACCCTGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | GACATCATCAATCAGGATATAGCGCAATTAAAACCTTaGAGGGACAAAGCCTCGTGCTATGGTTGGCTCATT | + |
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Preference number: 3 (lower is better) Translates to: DIINQDIAQLKP*RDKASCYGWLI Trigger: AATGAGCCAACCATAGCACGAGGCTTTGTCCCTCCAAGGTTTTAATTGCGCTATATCCTGATTGATGATGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CCA 72 bp | AACTTCAGTTTACATGTTAGAAAAATGGAAACAGACTaGAGAGATGGCTCAGTGGTTAAGAGCACTGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: NFSLHVRKMETD*RDGSVVKSTAC Trigger: GCAGGCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCTGTTTCCATTTTTCTAACATGTAAACTGAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CAA 72 bp | AGCCTGTCTCCTGGGCCTCTTCTTGCCTGGCTCTTGTaGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLSPGPLLAWLL*FPFPSGQHLPG Trigger: TCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGAGACAGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CCA 90 bp | GGCGGTTGGATAAGGTTGGCCTCTGGCAACAGGGTGCCAGGCTGGGTCAAGGTTGCTCCAGGAGTTGGTTaGCCCCTTGTATCTCACTTG | + |
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Preference number: 4 (lower is better) Translates to: GGWIRLASGNRVPGWVKVAPGVG*PLVSHL Trigger: CAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGC...AACCTTGACCCAGCCTGGCACCCTGTTGCCAGAGGCCAACCTTATCCAACCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CCA 90 bp | ATGGTTGGCTCATTCCTGAGCTACTCCCTACTACCAGAAAAGGCCGGCCGGCCCAAGAGCTCCAGGAGTTaGTTGGCCCCTTGTATCTCA | + |
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Preference number: 4 (lower is better) Translates to: MVGSFLSYSLLPEKAGRPKSSRS*LAPCIS Trigger: TGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTT...GGGCCGGCCGGCCTTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CCA 90 bp | CTCTGGCAACAGGGTGCCAGGCTGGGTCAAGGTTTTCAGGCCAGCCTGTCTCCTTGTGACTTTGCTGCCTaGGTAGATTTCCCGCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: LWQQGARLGQGFQASLSPCDFAA*VDFPLN Trigger: ATTCAGCGGGAAATCTACCCAGGCAGCAAAGTCACA...AGGAGACAGGCTGGCCTGAAAACCTTGACCCAGCCTGGCACCCTGTTGCCAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR TCA 90 bp | TTCTTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGACCTCTCAAAGTGTGTaGCTTTGCTGCCTGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: FLPGSCCSHSLLASTSQETSQSV*LCCLGR Trigger: TCTACCCAGGCAGCAAAGTCACACACTTTGAGAGGT...CTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CCA 90 bp | CGTGCTATGGTTGGCTCATTCCTGAGCTACTCCCTACTACCAGAAAAGGCCGGCGCTGCTCTTGTGGAATaGGGGGTCTACGTGTGTATC | + |
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Preference number: 4 (lower is better) Translates to: RAMVGSFLSYSLLPEKAGAALVE*GVYVCI Trigger: GATACACACGTAGACCCCCCATTCCACAAGAGCAGC...GCCGGCCTTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCATAGCACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR TCA 90 bp | AGTCCAGAGTCCATTCATTGCTCTCTCTCTCCCGCCTCTATCCCTCGGCTTGCCTCAAAGAAGACCATCTaGGAGAAAGGAACTCCGGTC | + |
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Preference number: 4 (lower is better) Translates to: SPESIHCSLSPASIPRLASKKTI*EKGTPV Trigger: GACCGGAGTTCCTTTCTCTCAGATGGTCTTCTTTGA...GGCAAGCCGAGGGATAGAGGCGGGAGAGAGAGAGCAATGAATGGACTCTGGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| 3UTR CAA 72 bp | TACAAAGAAATGCACAGCGTTATGGCACCCCACTATTaGAAACCGTTGGAGGAGGTCTCAGGGTGGGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: YKEMHSVMAPHY*KPLEEVSGWVP Trigger: TGGAACCCACCCTGAGACCTCCTCCAACGGTTTCAAATAGTGGGGTGCCATAACGCTGTGCATTTCTTTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR GCA 90 bp | TCTGATACGATACCCTCTTCTGGTGTGTCTGAAGACAATGACAGTATCATATACGGCACGCCAAGGCTCTaGAGTCTTCCCAAGACCTCG | + |
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Preference number: 4 (lower is better) Translates to: SDTIPSSGVSEDNDSIIYGTPRL*SLPKTS Trigger: CGAGGTCTTGGGAAGACTGCAGAGCCTTGGCGTGCC...GTATATGATACTGTCATTGTCTTCAGACACACCAGAAGAGGGTATCGTATCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CCA 90 bp | TATTTGAAACCGTTGGAGGAGGTCTCAGGGTGGGTTCCAACACAAGGAAACAACTACAATTGGATGTTCTaGCCCCGCCTGTCTCGTACA | + |
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Preference number: 4 (lower is better) Translates to: YLKPLEEVSGWVPTQGNNYNWMF*PRLSRT Trigger: TGTACGAGACAGGCGGGGCCAGAACATCCAATTGTA...GTTGTTTCCTTGTGTTGGAACCCACCCTGAGACCTCCTCCAACGGTTTCAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | CTCTGGCAACAGGGTGCCAGGCTGGGTCAAGGTTTTCAGGCCAGCCTGTCTCCTCACCTCCGGGTACAATaGGATGTTCTGGCCCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: LWQQGARLGQGFQASLSPHLRVQ*DVLAPP Trigger: AGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTG...AGGAGACAGGCTGGCCTGAAAACCTTGACCCAGCCTGGCACCCTGTTGCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS GCA 90 bp | ATCTCACTTGTCCGAGAAGCAGCGGCGACAGGCACGCCAAGGCTCTaGAGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATTGGATG | + |
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Preference number: 5 (lower is better) Translates to: ISLVREAAATGTPRL*SLPKTSGTSGYNWM Trigger: CATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACTGCAGAGCCTTGGCGTGCCTGTCGCCGCTGCTTCTCGGACAAGTGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 90 bp | AGGCTCTGCAGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATTaGATGTTCTGGCCCCGCCTGTCTCGTACAGTTCCATCGCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: RLCSLPKTSGTSGYN*MFWPRLSRTVPSLL Trigger: GAGCAGCGATGGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACTGCAGAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | ATGGTTGGCTCATTCCTGAGCTACTCCCTACTACCAGAAAAGGCCGGCCGGCCCCCCCTTGTATCTCACTaGTCCGAGAAGCAGCGGCGA | + |
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Preference number: 5 (lower is better) Translates to: MVGSFLSYSLLPEKAGRPPLVSH*SEKQRR Trigger: TCGCCGCTGCTTCTCGGACAAGTGAGATACAAGGGG...GGGCCGGCCGGCCTTTTCTGGTAGTAGGGAGTAGCTCAGGAATGAGCCAACCAT 59% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | TTGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGGCCGAGTTGGTTGGCCCCTaGTATCTCACTTGTCCGAGA | + |
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Preference number: 5 (lower is better) Translates to: LPGSCCSHSLLASTSQEAELVGP*YLTCPR Trigger: TCTCGGACAAGTGAGATACAAGGGGCCAACCAACTC...GGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 90 bp | AGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATTGGATGTTCTaGCCCCGCCTGTCTCGTACAGTTCCATCGCTGCTCTTGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: SLPKTSGTSGYNWMF*PRLSRTVPSLLLWN Trigger: ATTCCACAAGAGCAGCGATGGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | CAGGCCAGCCTGTCTCCTGGGCCTCTTCTTGCCTGGCTCTTGTTGTTCCCATTCAAAGAGCTCCAGGAGTaGGTTGGCCCCTTGTATCTC | + |
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Preference number: 5 (lower is better) Translates to: QASLSPGPLLAWLLLFPFKELQE*VGPLYL Trigger: GAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTT...GAATGGGAACAACAAGAGCCAGGCAAGAAGAGGCCCAGGAGACAGGCTGGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | TGCCTGGCTCTTGTTGTTCCCATTCCCTTCTGGCCAGCACCTCCCAGGAGGCCCGTCCAGCTTGGGCCTTaGCAAATGTCTCTAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: CLALVVPIPFWPAPPRRPVQLGP*QMSLIL Trigger: AAGGATTAGAGACATTTGCAAAGGCCCAAGCTGGAC...GGGCCTCCTGGGAGGTGCTGGCCAGAAGGGAATGGGAACAACAAGAGCCAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 90 bp | TCCGGTCTTGTGGTGCAACCTCTCAAAGTGTGTGACTTTGCTGCCTaGGTAGATTTCCCGCTGAATAAAGTATTTGCCAAGGTCAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: SGLVVQPLKVCDFAA*VDFPLNKVFAKVKE Trigger: CTCTTTGACCTTGGCAAATACTTTATTCAGCGGGAAATCTACCCAGGCAGCAAAGTCACACACTTTGAGAGGTTGCACCACAAGACCGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS TCA 90 bp | CCAACGTCTATGATATTCCGATTCTCATCATCAAAGAAGACCATCTaGGAGAAAGGAACTCCGGTCTTGTGGTGCAACCTCTCAAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: PTSMIFRFSSSKKTI*EKGTPVLWCNLSKC Trigger: ACACTTTGAGAGGTTGCACCACAAGACCGGAGTTCCTTTCTCTCAGATGGTCTTCTTTGATGATGAGAATCGGAATATCATAGACGTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS-3UTR CAA 90 bp | TCTGATACGATACCCTCTTCTGGTGTGTCTGAAGACAATGACAGTATCATATACAAAGGAACTCCGGTCTaGTGGTGCAACCTCTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: SDTIPSSGVSEDNDSIIYKGTPV*WCNLSK Trigger: CTTTGAGAGGTTGCACCACAAGACCGGAGTTCCTTT...GTATATGATACTGTCATTGTCTTCAGACACACCAGAAGAGGGTATCGTATCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS GCA 72 bp | GTCCGAGAAGCAGCGGCGACAGGCACGCCAAGGCTCTaGAGTCTTCCCAAGACCTCGGGCACCTCCGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: VREAAATGTPRL*SLPKTSGTSGY Trigger: GTACCCGGAGGTGCCCGAGGTCTTGGGAAGACTGCAGAGCCTTGGCGTGCCTGTCGCCGCTGCTTCTCGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 72 bp | AGAGCTCCAGGAGTTGGTTGGCCCCTTGTATCTCACTaGTCCGAGAAGCAGCGGCGACAGGCACGCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: RAPGVGWPLVSH*SEKQRRQARQG Trigger: GCCTTGGCGTGCCTGTCGCCGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 72 bp | AAGACCTCGGGCACCTCCGGGTACAATTGGATGTTCTaGCCCCGCCTGTCTCGTACAGTTCCATCGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KTSGTSGYNWMF*PRLSRTVPSLL Trigger: GAGCAGCGATGGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 72 bp | CAGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATaGGATGTTCTGGCCCCGCCTGTCTCGTACAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: QSSQDLGHLRVQ*DVLAPPVSYSS Trigger: GGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 90 bp | AAGGCTCTGCAGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATaGGATGTTCTGGCCCCGCCTGTCTCGTACAGTTCCATCGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: KALQSSQDLGHLRVQ*DVLAPPVSYSSIAA Trigger: AGCAGCGATGGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACTGCAGAGCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 72 bp | AGTCTTCCCAAGACCTCGGGCACCTCCGGGTACAATTaGATGTTCTGGCCCCGCCTGTCTCGTACAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SLPKTSGTSGYN*MFWPRLSRTVP Trigger: TGGAACTGTACGAGACAGGCGGGGCCAGAACATCCAATTGTACCCGGAGGTGCCCGAGGTCTTGGGAAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 72 bp | GCCAAGGTCAAAGAGCTCCAGGAGTTGGTTGGCCCCTaGTATCTCACTTGTCCGAGAAGCAGCGGCGACAGG | + |
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Preference number: 6 (lower is better) Translates to: AKVKELQELVGP*YLTCPRSSGDR Trigger: CCTGTCGCCGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 90 bp | AAAGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTTGGTTGGCCCCTaGTATCTCACTTGTCCGAGAAGCAGCGGCGACAGGCACGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: KVFAKVKELQELVGP*YLTCPRSSGDRHAK Trigger: CTTGGCGTGCCTGTCGCCGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 72 bp | CCTGTCTCGTACAGTTCCATCGCTGCTCTTGTGGAATaGGGGGTCTACGTGTGTATCTACCCAGAAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: PVSYSSIAALVE*GVYVCIYPERP Trigger: TGGCCTTTCTGGGTAGATACACACGTAGACCCCCCATTCCACAAGAGCAGCGATGGAACTGTACGAGACAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 72 bp | AGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTTGGTTaGCCCCTTGTATCTCACTTGTCCGAGAAGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: SICQGQRAPGVG*PLVSHLSEKQR Trigger: CCGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 90 bp | TTCCCGCTGAATAAAGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTaGGTTGGCCCCTTGTATCTCACTTGTCCGAGAAGCAGCGGCGAC | + |
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Preference number: 6 (lower is better) Translates to: FPLNKVFAKVKELQE*VGPLYLTCPRSSGD Trigger: GTCGCCGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACTTTATTCAGCGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 72 bp | AAGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTTGGTaGGCCCCTTGTATCTCACTTGTCCGAGAAGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: KYLPRSKSSRSW*APCISLVREAA Trigger: CGCTGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CCA 72 bp | ATAAAGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTTaGTTGGCCCCTTGTATCTCACTTGTCCGAGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: IKYLPRSKSSRS*LAPCISLVREA Trigger: TGCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS CAA 72 bp | AATAAAGTATTTGCCAAGGTCAAAGAGCTCCAGGAGTaGGTTGGCCCCTTGTATCTCACTTGTCCGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: NKVFAKVKELQE*VGPLYLTCPRS Trigger: GCTTCTCGGACAAGTGAGATACAAGGGGCCAACCAACTCCTGGAGCTCTTTGACCTTGGCAAATACTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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| CDS TCA 72 bp | ATGATATTCCGATTCTCATCATCAAAGAAGACCATCTaGGAGAAAGGAACTCCGGTCTTGTGGTGCAACCTC | + |
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Preference number: 6 (lower is better) Translates to: MIFRFSSSKKTI*EKGTPVLWCNL Trigger: GAGGTTGCACCACAAGACCGGAGTTCCTTTCTCTCAGATGGTCTTCTTTGATGATGAGAATCGGAATATCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002400.7 |
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