Pregenerated sensors for MDH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019179Ensembl transcript IDs: ENSMUST00000019323.11, ENSMUST00000138101.2, ENSMUST00000196285.2, ENSMUST00000200556.5
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTGGCCTTCACGACTTCTGTGCCAGCCTCCTGGATCCTCCCGGTaGGTGTGGCCAGCTGGTCTTGGGGAAAGTCAACCTTCGGGGTAC | + |
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Preference number: 1 (lower is better) Translates to: PWPSRLLCQPPGSSR*VWPAGLGESQPSGY Trigger: GTACCCCGAAGGTTGACTTTCCCCAAGACCAGCTGGCCACACTCACCGGGAGGATCCAGGAGGCTGGCACAGAAGTCGTGAAGGCCAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 90 bp | GAACCTGCTCCAGCCTTGGCCTTCACGACTTCTGTGCCAGCCTCCTaGATCCTCCCGGTGAGTGTGGCCAGCTGGTCTTGGGGAAAGTCA | + |
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Preference number: 1 (lower is better) Translates to: EPAPALAFTTSVPAS*ILPVSVASWSWGKS Trigger: TGACTTTCCCCAAGACCAGCTGGCCACACTCACCGGGAGGATCCAGGAGGCTGGCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 90 bp | CGAGGGAGAAGACAAAGCGGGCTCCAGCATAAGCCATGGACAGAGTaGCAGAACCTGCTCCAGCCTTGGCCTTCACGACTTCTGTGCCAG | + |
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Preference number: 1 (lower is better) Translates to: RGRRQSGLQHKPWTE*QNLLQPWPSRLLCQ Trigger: CTGGCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTTATGCTGGAGCCCGCTTTGTCTTCTCCCTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 90 bp | TGGCGTCCACGAGGGAGAAGACAAAGCGGGCTCCAGCATAAGCCATaGACAGAGTGGCAGAACCTGCTCCAGCCTTGGCCTTCACGACTT | + |
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Preference number: 1 (lower is better) Translates to: WRPRGRRQSGLQHKP*TEWQNLLQPWPSRL Trigger: AAGTCGTGAAGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTTATGCTGGAGCCCGCTTTGTCTTCTCCCTCGTGGACGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 90 bp | TGGACTGAACAAAAGAACACTCAACGACTCCTTCCTTCCCGTTCATaGCGTCCACGAGGGAGAAGACAAAGCGGGCTCCAGCATAAGCCA | + |
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Preference number: 1 (lower is better) Translates to: WTEQKNTQRLLPSRS*RPRGRRQSGLQHKP Trigger: TGGCTTATGCTGGAGCCCGCTTTGTCTTCTCCCTCGTGGACGCCATGAACGGGAAGGAAGGAGTCGTTGAGTGTTCTTTTGTTCAGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 90 bp | GAAGATCTTGTTAGGGTTGTACACACCGTGCTTCTTGAAAACTTCTaGTGTGATGGGGATGGTGGAGTTCACTGGGTTGGCAATGATGCA | + |
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Preference number: 1 (lower is better) Translates to: EDLVRVVHTVLLENF*CDGDGGVHWVGNDA Trigger: TGCATCATTGCCAACCCAGTGAACTCCACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 90 bp | TCAAGGGTTGTCACACCGAAGATCTTGTTAGGGTTGTACACACCGTaGTTCTTGAAAACTTCTGCTGTGATGGGGATGGTGGAGTTCACT | + |
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Preference number: 1 (lower is better) Translates to: SRVVTPKILLGLYTP*FLKTSAVMGMVEFT Trigger: AGTGAACTCCACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGACAACCCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 90 bp | TTCTCAAGTGGTTCCAAAGACATGATGCTGAATAAGTTAGGATGCTaGTGCTGCTGCTGCTCGAGGCTCACACCTCTCACTTCATGTTCT | + |
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Preference number: 1 (lower is better) Translates to: FSSGSKDMMLNKLGC*CCCCSRLTPLTSCS Trigger: AGAACATGAAGTGAGAGGTGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAACTTATTCAGCATCATGTCTTTGGAACCACTTGAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 90 bp | AGATTCTCAAGTGGTTCCAAAGACATGATGCTGAATAAGTTAGGATaGTGCTGCTGCTGCTGCTCGAGGCTCACACCTCTCACTTCATGT | + |
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Preference number: 1 (lower is better) Translates to: RFSSGSKDMMLNKLG*CCCCCSRLTPLTSC Trigger: ACATGAAGTGAGAGGTGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAACTTATTCAGCATCATGTCTTTGGAACCACTTGAGAATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCCCGGTGAGTGTGGCCAGCTGGTCTTGGGGAAAGTCAACCTTCGGGGTACAATCGTCTTCCCGGCGTaGCCGCCAATGACAGGCACG | + |
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Preference number: 2 (lower is better) Translates to: PPGECGQLVLGKVNLRGTIVFPA*PPMTGT Trigger: CGTGCCTGTCATTGGCGGCCACGCCGGGAAGACGAT...TGTACCCCGAAGGTTGACTTTCCCCAAGACCAGCTGGCCACACTCACCGGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CAA 90 bp | AGGGGGATGATCGTCTTCCCGGCGTGGCCGCCAATGACAGGCACGTaGACTCGAGCTGGATCCAAACCCTTTAGCTCTGCCACAAACGTG | + |
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Preference number: 2 (lower is better) Translates to: RGMIVFPAWPPMTGT*TRAGSKPFSSATNV Trigger: CACGTTTGTGGCAGAGCTAAAGGGTTTGGATCCAGCTCGAGTCAACGTGCCTGTCATTGGCGGCCACGCCGGGAAGACGATCATCCCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | AACCTTCGGGGTACACTGAGAGATCAGGGGGATGATCGTCTTCCCGGCGTGGCCAATAAGTTAGGATGCTaGTGCTGCTGCTGCTCGAGG | + |
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Preference number: 2 (lower is better) Translates to: NLRGTLRDQGDDRLPGVANKLGC*CCCCSR Trigger: CCTCGAGCAGCAGCAGCAGCAGCATCCTAACTTATT...GGCCACGCCGGGAAGACGATCATCCCCCTGATCTCTCAGTGTACCCCGAAGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CAA 90 bp | CTGCTGCTGCTGCTGCTCGAGGCTCACACCTCTCACTTCATGTTCTaGACAAAGTCCTCGCCTTTCTTGATGGAGGCTTTCAGCTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: LLLLLLEAHTSHFMF*TKSSPFLMEAFSSG Trigger: CCCTGAGCTGAAAGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTGAGCCTCGAGCAGCAGCAGCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR TCA 90 bp | CACACCTCTCACTTCATGTTCTTGACAAAGTCCTCGCCTTTCTTGATGGAGGCTCCTGGATCCTCCCGGTaGGTGTGGCCAGCTGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: HTSHFMFLTKSSPFLMEAPGSSR*VWPAGL Trigger: AAGACCAGCTGGCCACACTCACCGGGAGGATCCAGG...AGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | CTGACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACGGATGCTGCTGCTGCTaGTGCTCGAGGCTCACACCT | + |
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Preference number: 2 (lower is better) Translates to: LTQHPPSTQTRFSSGSKDGCCCC*CSRLTP Trigger: AGGTGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCC...GTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR-3UTR CCA 90 bp | CATAATTTGGAAGAGATGCTGATGCTGACTCAACACCCTCCATCAACGCAAACTGCTTCAGGACAGTGCTaGGCACAGGCAGCCGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: HNLEEMLMLTQHPPSTQTASGQC*AQAAVR Trigger: CCTGACGGCTGCCTGTGCCCAGCACTGTCCTGAAGC...AGTTTGCGTTGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | GCCACAAACGTGTTCGCTCTGACGATGTCAAGGGTTGTCACACCGAAGATCTTGCTGAATAAGTTAGGATaGTGCTGCTGCTGCTGCTCG | + |
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Preference number: 2 (lower is better) Translates to: ATNVFALTMSRVVTPKILLNKLG*CCCCCS Trigger: CGAGCAGCAGCAGCAGCAGCATCCTAACTTATTCAG...CAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGCGAACACGTTTGTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR CCA 90 bp | CACACCTCTCACTTCATGTTCTTGACAAAGTCCTCGCCTTTCTTGATGGAGGCTAACCTGCTCCAGCCTTaGCCTTCACGACTTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: HTSHFMFLTKSSPFLMEANLLQP*PSRLLC Trigger: GCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTT...AGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGAGATGCTGATGCTGACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAAGTTAGGATGCTGCTaGTGCTGCTGCTCGAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: EEMLMLTQHPPSTQTRFSKLGCC*CCCSRL Trigger: GAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAACTT...TGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR CAA 90 bp | GCTCTGACGATGTCAAGGGTTGTCACACCGAAGATCTTGTTAGGGTaGTACACACCGTGCTTCTTGAAAACTTCTGCTGTGATGGGGATG | + |
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Preference number: 2 (lower is better) Translates to: ALTMSRVVTPKILLG*YTPCFLKTSAVMGM Trigger: CATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | ACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGTTAGGATGCTGCTGCTaGTGCTGCTCGAGGCTCACA | + |
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Preference number: 2 (lower is better) Translates to: TQHPPSTQTRFSSGSKDMLGCCC*CCSRLT Trigger: TGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAA...CATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR CAA 90 bp | AACGTGTTCGCTCTGACGATGTCAAGGGTTGTCACACCGAAGATCTaGTTAGGGTTGTACACACCGTGCTTCTTGAAAACTTCTGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: NVFALTMSRVVTPKI*LGLYTPCFLKTSAV Trigger: CACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGCGAACACGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CAA 90 bp | GCTCACACCTCTCACTTCATGTTCTTGACAAAGTCCTCGCCTTTCTaGATGGAGGCTTTCAGCTCAGGGATAGCCTCGGCAATCATTTTT | + |
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Preference number: 2 (lower is better) Translates to: AHTSHFMFLTKSSPF*MEAFSSGIASAIIF Trigger: AAAAATGATTGCCGAGGCTATCCCTGAGCTGAAAGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTGAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | CAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTCAACACCCTCCATCACTGAATAAGTTAGGATaGTGCTGCTGCTGCTGCTCG | + |
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Preference number: 2 (lower is better) Translates to: QTRHNLEEMLMLTQHPPSLNKLG*CCCCCS Trigger: CGAGCAGCAGCAGCAGCAGCATCCTAACTTATTCAG...TGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | TACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTATGGCTTCAGGACAGTaGTGGGCACAGGCAGCCGTC | + |
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Preference number: 2 (lower is better) Translates to: YCHYQQTRHNLEEMLMLTMASGQ*WAQAAV Trigger: GACGGCTGCCTGTGCCCAGCACTGTCCTGAAGCCAT...AGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGGATGCTGCTGCTGCTaGTGCTCGAGGCTCACACCT | + |
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Preference number: 2 (lower is better) Translates to: ENQSLLYCHYQQTRHNLEGCCCC*CSRLTP Trigger: AGGTGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCC...TTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR-3UTR CCA 90 bp | AAGATCTTGTTAGGGTTGTACACACCGTGCTTCTTGAAAACTTCTGCTGTGATGGATGGTGGAGTTCACTaGGTTGGCAATGATGCAAAC | + |
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Preference number: 2 (lower is better) Translates to: KILLGLYTPCFLKTSAVMDGGVH*VGNDAN Trigger: GTTTGCATCATTGCCAACCCAGTGAACTCCACCATC...CATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATATTAGGATGCTGCTGCTaGTGCTGCTCGAGGCTCACA | + |
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Preference number: 2 (lower is better) Translates to: LKKKIRACFTVIINRPDILGCCC*CCSRLT Trigger: TGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAA...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAAATAAGTTAGGATGCTaGTGCTGCTGCTGCTCGAGG | + |
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Preference number: 2 (lower is better) Translates to: ENQSLLYCHYQQTRHNLENKLGC*CCCCSR Trigger: CCTCGAGCAGCAGCAGCAGCAGCATCCTAACTTATT...TTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
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| 3UTR TCA 72 bp | TCACGACTTCTGTGCCAGCCTCCTGGATCCTCCCGGTaGGTGTGGCCAGCTGGTCTTGGGGAAAGTCAACCT | + |
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Preference number: 3 (lower is better) Translates to: SRLLCQPPGSSR*VWPAGLGESQP Trigger: AGGTTGACTTTCCCCAAGACCAGCTGGCCACACTCACCGGGAGGATCCAGGAGGCTGGCACAGAAGTCGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 72 bp | AAGCCATGGACAGAGTGGCAGAACCTGCTCCAGCCTTaGCCTTCACGACTTCTGTGCCAGCCTCCTGGATCC | + |
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Preference number: 3 (lower is better) Translates to: KPWTEWQNLLQP*PSRLLCQPPGS Trigger: GGATCCAGGAGGCTGGCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 72 bp | CGAGGGAGAAGACAAAGCGGGCTCCAGCATAAGCCATaGACAGAGTGGCAGAACCTGCTCCAGCCTTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: RGRRQSGLQHKP*TEWQNLLQPWP Trigger: AGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTTATGCTGGAGCCCGCTTTGTCTTCTCCCTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 72 bp | AGACAAAGCGGGCTCCAGCATAAGCCATGGACAGAGTaGCAGAACCTGCTCCAGCCTTGGCCTTCACGACTT | + |
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Preference number: 3 (lower is better) Translates to: RQSGLQHKPWTE*QNLLQPWPSRL Trigger: AAGTCGTGAAGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTTATGCTGGAGCCCGCTTTGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CCA 72 bp | CAAAAGAACACTCAACGACTCCTTCCTTCCCGTTCATaGCGTCCACGAGGGAGAAGACAAAGCGGGCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: QKNTQRLLPSRS*RPRGRRQSGLQ Trigger: CTGGAGCCCGCTTTGTCTTCTCCCTCGTGGACGCCATGAACGGGAAGGAAGGAGTCGTTGAGTGTTCTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCTGCTCGAGGCTCACACCTCTCACTTCATGTTCTTGACAAAGTCCTCGCCTGCCACAATGGTAGCGTaGGTGTTGAACAGGTCATCC | + |
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Preference number: 3 (lower is better) Translates to: LLLEAHTSHFMFLTKSSPATMVA*VLNRSS Trigger: GGATGACCTGTTCAACACCAACGCTACCATTGTGGC...AGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTGAGCCTCGAGCAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 72 bp | GTTAGGGTTGTACACACCGTGCTTCTTGAAAACTTCTaGTGTGATGGGGATGGTGGAGTTCACTGGGTTGGC | + |
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Preference number: 3 (lower is better) Translates to: VRVVHTVLLENF*CDGDGGVHWVG Trigger: GCCAACCCAGTGAACTCCACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 72 bp | GGTTCCAAAGACATGATGCTGAATAAGTTAGGATGCTaGTGCTGCTGCTGCTCGAGGCTCACACCTCTCACT | + |
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Preference number: 3 (lower is better) Translates to: GSKDMMLNKLGC*CCCCSRLTPLT Trigger: AGTGAGAGGTGTGAGCCTCGAGCAGCAGCAGCAGCAGCATCCTAACTTATTCAGCATCATGTCTTTGGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR GCA 72 bp | GTCACACCGAAGATCTTGTTAGGGTTGTACACACCGTaGTTCTTGAAAACTTCTGCTGTGATGGGGATGGTG | + |
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Preference number: 3 (lower is better) Translates to: VTPKILLGLYTP*FLKTSAVMGMV Trigger: CACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR-3UTR CAA 90 bp | AAACGTGTTCGCTCTGACGATGTCAAGGGTTGTCACACCGAAGATCTTGTTAGGCAGACCAGACATAATTaGGAAGAGATGCTGATGCTG | + |
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Preference number: 3 (lower is better) Translates to: KRVRSDDVKGCHTEDLVRQTRHN*EEMLML Trigger: CAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTG...CCTAACAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGCGAACACGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CAA 72 bp | ATCGTCTTCCCGGCGTGGCCGCCAATGACAGGCACGTaGACTCGAGCTGGATCCAAACCCTTTAGCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: IVFPAWPPMTGT*TRAGSKPFSSA Trigger: GGCAGAGCTAAAGGGTTTGGATCCAGCTCGAGTCAACGTGCCTGTCATTGGCGGCCACGCCGGGAAGACGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| CDS-3UTR TCA 90 bp | CTGACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACTCTGGGCCGAAGTGCTaGAGCTGCGGCGGAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: LTQHPPSTQTRFSSGSKDSGPKC*SCGGER Trigger: CCGCTCTCCGCCGCAGCTTCAGCACTTCGGCCCAGA...GTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
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| CDS-3UTR CCA 90 bp | CAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTCAACACCCTCCATCAATCGTCTTCCCGGCGTaGCCGCCAATGACAGGCACG | + |
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Preference number: 4 (lower is better) Translates to: QTRHNLEEMLMLTQHPPSIVFPA*PPMTGT Trigger: CGTGCCTGTCATTGGCGGCCACGCCGGGAAGACGAT...TGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
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| 3UTR CAA 72 bp | ACTTCTGCTGTGATGGGGATGGTGGAGTTCACTGGGTaGGCAATGATGCAAACCATGGCTTCAGGACAGTGC | + |
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Preference number: 4 (lower is better) Translates to: TSAVMGMVEFTG*AMMQTMASGQC Trigger: GCACTGTCCTGAAGCCATGGTTTGCATCATTGCCAACCCAGTGAACTCCACCATCCCCATCACAGCAGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| CDS-3UTR TCA 90 bp | CATAATTTGGAAGAGATGCTGATGCTGACTCAACACCCTCCATCAACGCAAACTCCTGGATCCTCCCGGTaGGTGTGGCCAGCTGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: HNLEEMLMLTQHPPSTQTPGSSR*VWPAGL Trigger: AAGACCAGCTGGCCACACTCACCGGGAGGATCCAGG...AGTTTGCGTTGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
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| CDS-3UTR TCA 90 bp | TACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTCCTGGGCCGAAGTGCTaGAGCTGCGGCGGAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: YCHYQQTRHNLEEMLMLTPGPKC*SCGGER Trigger: CCGCTCTCCGCCGCAGCTTCAGCACTTCGGCCCAGG...AGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| 3UTR CAA 72 bp | CTGCTGCTCGAGGCTCACACCTCTCACTTCATGTTCTaGACAAAGTCCTCGCCTTTCTTGATGGAGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LLLEAHTSHFMF*TKSSPFLMEAF Trigger: GAAAGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGAGGTGTGAGCCTCGAGCAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
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| CDS-3UTR GCA 90 bp | CAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGATGAAAGGGGTTGCCCAATaGCCCCAGAAGCTCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QHPPSTQTRFSSGSKDMMKGVAQ*PQKLPG Trigger: TCCTGGGAGCTTCTGGGGGCATTGGGCAACCCCTTT...CATCATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
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| 3UTR CAA 72 bp | TCTCACTTCATGTTCTTGACAAAGTCCTCGCCTTTCTaGATGGAGGCTTTCAGCTCAGGGATAGCCTCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SHFMFLTKSSPF*MEAFSSGIASA Trigger: TGCCGAGGCTATCCCTGAGCTGAAAGCCTCCATCAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
||
| CDS-3UTR CCA 90 bp | CTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGGCTTCAGGACAGTGCTaGGCACAGGCAGCCGTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LYCHYQQTRHNLEEMLMLASGQC*AQAAVR Trigger: CCTGACGGCTGCCTGTGCCCAGCACTGTCCTGAAGC...CAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CCA 90 bp | ACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGGTGAGTGTGGCCAGCTaGTCTTGGGGAAAGTCAACC | + |
|
Preference number: 4 (lower is better) Translates to: TQHPPSTQTRFSSGSKDMVSVAS*SWGKST Trigger: GGTTGACTTTCCCCAAGACCAGCTGGCCACACTCAC...CATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR TCA 90 bp | AAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGGAGAGATCAGGGGGATaGTCGTCTTCCCGGCGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: KKIRACFTVIINRPDIIWERSGG*SSSRRG Trigger: GCCACGCCGGGAAGACGATCATCCCCCTGATCTCTC...CCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR TCA 90 bp | ACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGCCACATCACAACCTTTaGGGCAATCTGGCAACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TQHPPSTQTRFSSGSKDMPHHNL*GNLATA Trigger: AGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGG...CATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
||
| CDS-3UTR GCA 90 bp | CTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGCCTTCACGACTTCTGTaGCAGCCTCCTGGATCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LYCHYQQTRHNLEEMLMLPSRLL*QPPGSS Trigger: GGAGGATCCAGGAGGCTGGCACAGAAGTCGTGAAGG...CAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| 3UTR CAA 72 bp | GCTCTGACGATGTCAAGGGTTGTCACACCGAAGATCTaGTTAGGGTTGTACACACCGTGCTTCTTGAAAACT | + |
|
Preference number: 4 (lower is better) Translates to: ALTMSRVVTPKI*LGLYTPCFLKT Trigger: AGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
||
| CDS-3UTR TCA 90 bp | TACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTGTTCTTCAGCAGGAGTaGAAGGGGTTGCCCAATGCC | + |
|
Preference number: 4 (lower is better) Translates to: YCHYQQTRHNLEEMLMLTVLQQE*KGLPNA Trigger: GGCATTGGGCAACCCCTTTCACTCCTGCTGAAGAAC...AGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR GCA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATGGCTTCAGGACAGTaGTGGGCACAGGCAGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: LKKKIRACFTVIINRPDIMASGQ*WAQAAV Trigger: GACGGCTGCCTGTGCCCAGCACTGTCCTGAAGCCAT...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CCA 90 bp | TACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTAACCTGCTCCAGCCTTaGCCTTCACGACTTCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YCHYQQTRHNLEEMLMLTNLLQP*PSRLLC Trigger: GCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTT...AGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| 3UTR CAA 72 bp | ATGTCAAGGGTTGTCACACCGAAGATCTTGTTAGGGTaGTACACACCGTGCTTCTTGAAAACTTCTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: MSRVVTPKILLG*YTPCFLKTSAV Trigger: CACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTAACAAGATCTTCGGTGTGACAACCCTTGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
||
| CDS-3UTR TCA 90 bp | CTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGGCTCTGGTCTCAATGTaGCTCAGATCTGCTGCCACA | + |
|
Preference number: 4 (lower is better) Translates to: LYCHYQQTRHNLEEMLMLALVSM*LRSAAT Trigger: TGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGC...CAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR TCA 90 bp | ACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGATGCTGAATAAGTTAGGAAGTCCTCGCCTTTCTTaGTGGAGGCTTTCAGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: TQTRFSSGSKDMMLNKLGSPRLS*WRLSAQ Trigger: CTGAGCTGAAAGCCTCCATCAAGAAAGGCGAGGACT...TCCTAACTTATTCAGCATCATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CCA 90 bp | TCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGATGCTGAATAAGTTAAAGCCATGGACAGAGTaGCAGAACCTGCTCCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: STQTRFSSGSKDMMLNKLKPWTE*QNLLQP Trigger: AGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTT...TAACTTATTCAGCATCATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR TCA 90 bp | TACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTCCACATCACAACCTTTaGGGCAATCTGGCAACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: YCHYQQTRHNLEEMLMLTPHHNL*GNLATA Trigger: AGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGG...AGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
||
| 3UTR CAA 72 bp | CTGCTTTACTGTCATTATCAACAGACCAGACATAATTaGGAAGAGATGCTGATGCTGACTCAACACCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LLYCHYQQTRHN*EEMLMLTQHPP Trigger: TGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000138101.2 |
||
| CDS-3UTR TCA 90 bp | GAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGAATTTCCTCAAAAGGAGTaGTCTTGCCAATGCCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: ENQSLLYCHYQQTRHNLEFPQKE*SCQCPG Trigger: ACCTGGGCATTGGCAAGATCACTCCTTTTGAGGAAA...TTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR GCA 90 bp | ACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGATGCTGAATAAGTTAGGAGGGTTGTACACACCGTaGTTCTTGAAAACTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TQTRFSSGSKDMMLNKLGGLYTP*FLKTSA Trigger: AGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCC...TCCTAACTTATTCAGCATCATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR TCA 90 bp | AAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGTCCGTCTCTTTGGACTaGACAAAAGAACACTCAACG | + |
|
Preference number: 4 (lower is better) Translates to: KKIRACFTVIINRPDIIWSVSLD*TKEHST Trigger: CGTTGAGTGTTCTTTTGTTCAGTCCAAAGAGACGGA...CCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CCA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAGATGGTGGAGTTCACTaGGTTGGCAATGATGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LKKKIRACFTVIINRPDIDGGVH*VGNDAN Trigger: GTTTGCATCATTGCCAACCCAGTGAACTCCACCATC...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR GCA 90 bp | GAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGTAGCCTTTCACATTTaGTCTGGTCTCAATGTGACT | + |
|
Preference number: 4 (lower is better) Translates to: ENQSLLYCHYQQTRHNLEVAFHI*SGLNVT Trigger: AGTCACATTGAGACCAGAGCAAATGTGAAAGGCTAC...TTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CCA 90 bp | CTTTACTGTCATTATCAACAGACCAGACATAATTTGGAAGAGATGCTGATGCTGCTTTCACATTTGCTCTaGTCTCAATGTGACTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LYCHYQQTRHNLEEMLMLLSHLL*SQCDSD Trigger: ATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAG...CAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTGTTGATAATGACAGTAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS CCA 90 bp | CACTCCGGCTGGGATGACCACCACATCACAACCTTTGAGGCAATCTaGCAACTGCTCCGGTCCAAGGTAGCCTGGGCCGAAGTGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: HSGWDDHHITTFEAI*QLLRSKVAWAEVLK Trigger: CTTCAGCACTTCGGCCCAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCAGCCGGAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
||
| CDS CCA 90 bp | GAACAGGTCATCCCGTGTCATTCCTGGTTTCCTGGGCACTCCGGCTaGGATGACCACCACATCACAACCTTTGAGGCAATCTGGCAACTG | + |
|
Preference number: 5 (lower is better) Translates to: EQVIPCHSWFPGHSG*DDHHITTFEAIWQL Trigger: CAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCAGCCGGAGTGCCCAGGAAACCAGGAATGACACGGGATGACCTGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CCA 90 bp | CACTCCGGCTGGGATGACCACCACATCACAACCTTTGAGGCAATCTaGCAACTGCTCCGGTCCAAGGTAGCCTTTCACATTTGCTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: HSGWDDHHITTFEAI*QLLRSKVAFHICSG Trigger: ACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCAGCCGGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS GCA 90 bp | GTAGCCTTTCACATTTGCTCTGGTCTCAATGTGACTCAGATCTGCTaGCACACCAGGTGTGTGAGCGATATCGTAGAGGGTCAGGCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: VAFHICSGLNVTQIC*HTRCVSDIVEGQAA Trigger: AGCCGCCTGACCCTCTACGATATCGCTCACACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS GCA 90 bp | GAGGCAATCTGGCAACTGCTCCGGTCCAAGGTAGCCTTTCACATTTaGTCTGGTCTCAATGTGACTCAGATCTGCTGCCACACCAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: EAIWQLLRSKVAFHI*SGLNVTQICCHTRC Trigger: ACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS GCA 90 bp | AAGGTAGCCTTTCACATTTGCTCTGGTCTCAATGTGACTCAGATCTaGTGCCACACCAGGTGTGTGAGCGATATCGTAGAGGGTCAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: KVAFHICSGLNVTQI*CHTRCVSDIVEGQA Trigger: CGCCTGACCCTCTACGATATCGCTCACACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTACCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS GCA 90 bp | CATTCCTTTCACATTTGCTCTGGTCTCAATGTGACTCAGATCTGCTaGCACACCAGGTGTGTGAGCGATATCGTAGAGGGTCAGGCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: HSFHICSGLNVTQIC*HTRCVSDIVEGQAA Trigger: AGCCGCCTGACCCTCTACGATATCGCTCACACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196285.2 |
||
| CDS CCA 90 bp | AATCTGGCAACTGCTCCGGTCCAAGGTAGCCTTTCACATTTGCTCTaGTCTCAATGTGACTCAGATCTGCTGCCACACCAGGTGTGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: NLATAPVQGSLSHLL*SQCDSDLLPHQVCE Trigger: CTCACACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAGATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS GCA 90 bp | TGTCATTCCTTTCACATTTGCTCTGGTCTCAATGTGACTCAGATCTaGTGCCACACCAGGTGTGTGAGCGATATCGTAGAGGGTCAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: CHSFHICSGLNVTQI*CHTRCVSDIVEGQA Trigger: CGCCTGACCCTCTACGATATCGCTCACACACCTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGAATGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196285.2 |
||
| CDS-3UTR CAA 90 bp | CAGACCAGACATAATTTGGAAGAGATGCTGATGCTGACTCAACACCCTCCATCAGTCACACCGAAGATCTaGTTAGGGTTGTACACACCG | + |
|
Preference number: 5 (lower is better) Translates to: QTRHNLEEMLMLTQHPPSVTPKI*LGLYTP Trigger: CGGTGTGTACAACCCTAACAAGATCTTCGGTGTGAC...TGATGGAGGGTGTTGAGTCAGCATCAGCATCTCTTCCAAATTATGTCTGGTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CAA 90 bp | ACTCAACACCCTCCATCAACGCAAACTAGATTCTCAAGTGGTTCCAAAGACATGCCAATGACAGGCACGTaGACTCGAGCTGGATCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: TQHPPSTQTRFSSGSKDMPMTGT*TRAGSK Trigger: TTTGGATCCAGCTCGAGTCAACGTGCCTGTCATTGG...CATGTCTTTGGAACCACTTGAGAATCTAGTTTGCGTTGATGGAGGGTGTTGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CAA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATAGCCACAATGGTAGCGTaGGTGTTGAACAGGTCATCC | + |
|
Preference number: 5 (lower is better) Translates to: LKKKIRACFTVIINRPDIATMVA*VLNRSS Trigger: GGATGACCTGTTCAACACCAACGCTACCATTGTGGC...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CAA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATATCAAAAGGAGTGATCTaGCCAATGCCCAGGTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LKKKIRACFTVIINRPDISKGVI*PMPRFF Trigger: GAAGAACCTGGGCATTGGCAAGATCACTCCTTTTGA...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS-3UTR CAA 90 bp | TTGAAAAAGAAAATCAGAGCCTGCTTTACTGTCATTATCAACAGACCAGACATATACACACCGTGCTTCTaGAAAACTTCTGCTGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: LKKKIRACFTVIINRPDIYTPCF*KTSAVM Trigger: CATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTA...TATGTCTGGTCTGTTGATAATGACAGTAAAGCAGGCTCTGATTTTCTTTTTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019323.11 |
||
| CDS CCA 72 bp | AGCGTTGGTGTTGAACAGGTCATCCCGTGTCATTCCTaGTTTCCTGGGCACTCCGGCTGGGATGACCACCAC | + |
|
Preference number: 6 (lower is better) Translates to: SVGVEQVIPCHS*FPGHSGWDDHH Trigger: GTGGTGGTCATCCCAGCCGGAGTGCCCAGGAAACCAGGAATGACACGGGATGACCTGTTCAACACCAACGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CCA 72 bp | TGGGATGACCACCACATCACAACCTTTGAGGCAATCTaGCAACTGCTCCGGTCCAAGGTAGCCTGGGCCGAA | + |
|
Preference number: 6 (lower is better) Translates to: WDDHHITTFEAI*QLLRSKVAWAE Trigger: TTCGGCCCAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138101.2 |
||
| CDS CCA 72 bp | ATCCCGTGTCATTCCTGGTTTCCTGGGCACTCCGGCTaGGATGACCACCACATCACAACCTTTGAGGCAATC | + |
|
Preference number: 6 (lower is better) Translates to: IPCHSWFPGHSG*DDHHITTFEAI Trigger: GATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCAGCCGGAGTGCCCAGGAAACCAGGAATGACACGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CCA 72 bp | ACTGCTCCGGTCCAAGGTAGCCTTTCACATTTGCTCTaGTCTCAATGTGACTCAGATCTGCTGCCACACCAG | + |
|
Preference number: 6 (lower is better) Translates to: TAPVQGSLSHLL*SQCDSDLLPHQ Trigger: CTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CAA 72 bp | CTGGCAACTGCTCCGGTCCAAGGTAGCCTTTCACATTaGCTCTGGTCTCAATGTGACTCAGATCTGCTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: LATAPVQGSLSH*LWSQCDSDLLP Trigger: TGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CCA 72 bp | TGGGATGACCACCACATCACAACCTTTGAGGCAATCTaGCAACTGCTCCGGTCCAAGGTAGCCTTTCACATT | + |
|
Preference number: 6 (lower is better) Translates to: WDDHHITTFEAI*QLLRSKVAFHI Trigger: AATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTCAAAGGTTGTGATGTGGTGGTCATCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019323.11 ENSMUST00000200556.5 |
||
| CDS CCA 72 bp | ACAGGTCATCCCGTGTCATTCCTTTCACATTTGCTCTaGTCTCAATGTGACTCAGATCTGCTGCCACACCAG | + |
|
Preference number: 6 (lower is better) Translates to: TGHPVSFLSHLL*SQCDSDLLPHQ Trigger: CTGGTGTGGCAGCAGATCTGAGTCACATTGAGACCAGAGCAAATGTGAAAGGAATGACACGGGATGACCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196285.2 |
||